BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012098
(471 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255543757|ref|XP_002512941.1| diaminopimelate decarboxylase, putative [Ricinus communis]
gi|223547952|gb|EEF49444.1| diaminopimelate decarboxylase, putative [Ricinus communis]
Length = 488
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/464 (84%), Positives = 416/464 (89%), Gaps = 7/464 (1%)
Query: 2 AATQLCSNSASLSKALT-----QNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
A T ++ +LSK +T QNPF K P+K T + L TLKAVLSQNP +
Sbjct: 3 ATTTHLAHPPTLSKNITFHHLKQNPFLKTSTLPVKFTRTSPKPLS-LTLKAVLSQNPTLT 61
Query: 57 QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
Q TA +HCF+K DGFLYCE+++VQDVME+VEKRPFYLYSKPQITRNVEAYK ALEGL
Sbjct: 62 Q-ETAQFKHCFTKSNDGFLYCENLKVQDVMESVEKRPFYLYSKPQITRNVEAYKSALEGL 120
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
NSIIGYAIKANNN+KILEHLR+LGCGAVLVSGNELRLALRAG+DP KCIFNGNGKLLEDL
Sbjct: 121 NSIIGYAIKANNNFKILEHLRQLGCGAVLVSGNELRLALRAGYDPKKCIFNGNGKLLEDL 180
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
VLAA+EGVFVNVDSEFDLENIV ASRIAG+K+NVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 181 VLAAEEGVFVNVDSEFDLENIVAASRIAGEKINVLLRINPDVDPQVHPYVATGNKNSKFG 240
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IRAQGFE+
Sbjct: 241 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEI 300
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
DYLNIGGGLGIDYYH GAVLP PR+LIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN V
Sbjct: 301 DYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRV 360
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA E+S FDVVGPVCESADF
Sbjct: 361 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAQPIVEVSTFDVVGPVCESADF 420
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
LGK RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYW+
Sbjct: 421 LGKGRELPTPSKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWIE 464
>gi|224103381|ref|XP_002313033.1| predicted protein [Populus trichocarpa]
gi|222849441|gb|EEE86988.1| predicted protein [Populus trichocarpa]
Length = 482
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/465 (83%), Positives = 415/465 (89%), Gaps = 12/465 (2%)
Query: 1 MAATQLCSNSASLSKALTQ----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQ-NPAK 55
MAA S+S +SK LT NP PK P P K + K ++LKAV+SQ NPA
Sbjct: 1 MAAATNFSHSPFISKTLTHSLNHNPLPKNPTLPFKLS-------KSYSLKAVISQQNPAT 53
Query: 56 SQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEG 115
+ T +HCF+K DGFLYCE ++VQ++ME+VEKRPFYLYSKPQITRNVEAYK AL+G
Sbjct: 54 ATTQKTQFKHCFTKSQDGFLYCESLKVQEIMESVEKRPFYLYSKPQITRNVEAYKDALQG 113
Query: 116 LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
L+SIIGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGKLL+D
Sbjct: 114 LSSIIGYAIKANNNLKILEHLRGLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLDD 173
Query: 176 LVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235
LVLAAQEGVFVNVDSEFDLENIV A+RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF
Sbjct: 174 LVLAAQEGVFVNVDSEFDLENIVAAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 233
Query: 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE 295
GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA LMVNYID+IRAQGFE
Sbjct: 234 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAALMVNYIDEIRAQGFE 293
Query: 296 VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNH 355
VDYLNIGGGLGIDYYH+GAVLP PR+LIDTVRELVLSR+LNLIIEPGRSLIANTCCLVN
Sbjct: 294 VDYLNIGGGLGIDYYHSGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNR 353
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
VTGVKTNGTKNF+VIDGSMAELIRPSLYDAYQHIELVSPA AE+S FDVVGPVCESAD
Sbjct: 354 VTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPASPSAEVSTFDVVGPVCESAD 413
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
FLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 414 FLGKDRELPTPAKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 458
>gi|225428408|ref|XP_002283712.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 1
[Vitis vinifera]
Length = 485
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/469 (83%), Positives = 415/469 (88%), Gaps = 19/469 (4%)
Query: 1 MAATQLCSNSASLSKAL-------TQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNP 53
MAAT L + + SK+L + +PFP + + P TL TLKAVLSQNP
Sbjct: 1 MAATNLLPQAPTFSKSLKYPLNPKSFSPFPNLLLRPSPKTL---------TLKAVLSQNP 51
Query: 54 AKSQTHTAPVE---HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYK 110
AK+ T A + HCF K DGFLYCE +RVQDVM+ VEKRPFYLYSKPQITRN EAYK
Sbjct: 52 AKTLTPDAQAQKFQHCFRKSEDGFLYCEGLRVQDVMDQVEKRPFYLYSKPQITRNFEAYK 111
Query: 111 QALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170
+ALEGL SIIGYAIKANNN KILEHLR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNG
Sbjct: 112 EALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNG 171
Query: 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230
KLLEDLVLAAQEGVFVNVDSEFDL+NI+ A+RIAGKKVNVLLRINPDVDPQVHPYVATGN
Sbjct: 172 KLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAGKKVNVLLRINPDVDPQVHPYVATGN 231
Query: 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 290
KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IR
Sbjct: 232 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIR 291
Query: 291 AQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTC 350
AQGFE+ YLNIGGGLGIDYYH GAVLP PR+LIDTVRELVLSR+LNLIIEPGRSLIANTC
Sbjct: 292 AQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTC 351
Query: 351 CLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPV 410
CLVN VTGVKTNGTKNF+VIDGSMAELIRPSLYDAYQHIELVSP P DA+IS FDVVGPV
Sbjct: 352 CLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPPPSDAQISTFDVVGPV 411
Query: 411 CESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
CESADFLGK+RELPTP RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 412 CESADFLGKDRELPTPPRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 460
>gi|449462206|ref|XP_004148832.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like
[Cucumis sativus]
gi|449524272|ref|XP_004169147.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like
[Cucumis sativus]
Length = 482
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/466 (83%), Positives = 418/466 (89%), Gaps = 14/466 (3%)
Query: 1 MAATQL------CSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPA 54
MAAT L S S++L +L NPF +I P K L P +LKAVLSQNP+
Sbjct: 1 MAATNLYSPSPSPSLSSTLKHSLNSNPFHRIAFLPHKPFLK-----APLSLKAVLSQNPS 55
Query: 55 KSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
K+QT +HCFSK +DGFLYCE ++VQD+ME+V+KRPFYLYSKPQITRNVEAYK+ALE
Sbjct: 56 KTQTQ---FQHCFSKSSDGFLYCEGIKVQDIMESVDKRPFYLYSKPQITRNVEAYKEALE 112
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
GLNSIIGYAIKANNN K+LEHLRKLGCGAVLVSGNELRLAL AGFDPT+CIFNGNGKLLE
Sbjct: 113 GLNSIIGYAIKANNNLKVLEHLRKLGCGAVLVSGNELRLALHAGFDPTRCIFNGNGKLLE 172
Query: 175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
DLVLAA++GVFVNVDSEFDL+NIV A+RIA KKVNVLLRINPDVDPQVHPYVATGNKNSK
Sbjct: 173 DLVLAAEQGVFVNVDSEFDLDNIVAAARIARKKVNVLLRINPDVDPQVHPYVATGNKNSK 232
Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
FGIRNEKLQWFLDAVKAHP+ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IR QGF
Sbjct: 233 FGIRNEKLQWFLDAVKAHPDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRDQGF 292
Query: 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN 354
EVDYLNIGGGLGIDYYH GA+LP PR+LI+TVRELVLSRNLNLIIEPGRS+IANTCCLVN
Sbjct: 293 EVDYLNIGGGLGIDYYHAGAILPTPRDLINTVRELVLSRNLNLIIEPGRSVIANTCCLVN 352
Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELV+P P D+EIS FDVVGPVCESA
Sbjct: 353 RVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVAPTPPDSEISTFDVVGPVCESA 412
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
DFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 413 DFLGKQRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 458
>gi|225465560|ref|XP_002275012.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like
[Vitis vinifera]
Length = 564
Score = 781 bits (2018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/459 (83%), Positives = 407/459 (88%), Gaps = 5/459 (1%)
Query: 4 TQLCSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPV 63
T L + + SK+L PK SP L + + K TLKAVLSQNPAK+ T A
Sbjct: 83 TNLLPQTPTFSKSLKYPLNPK-SFSPFPNLL-LRSSPKTLTLKAVLSQNPAKTLTPDAQA 140
Query: 64 ---EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSII 120
+HCF K DGFLYCE +RVQDVM VEKRPFYLYSKPQI RN EAY++ALEGL SII
Sbjct: 141 KKFQHCFRKSEDGFLYCEGLRVQDVMNQVEKRPFYLYSKPQIARNFEAYREALEGLRSII 200
Query: 121 GYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA 180
GYAIKANNN KILEHLR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGKLLEDLVLAA
Sbjct: 201 GYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAA 260
Query: 181 QEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
QEGVFVNVDSEFDL+NI+ A+RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE
Sbjct: 261 QEGVFVNVDSEFDLDNIISAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 320
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IRAQGFE+ YLN
Sbjct: 321 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEISYLN 380
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
IGGGLGIDYYH GAVLP PR+LIDTVRELVLSR+LNLIIEPGRSLIANTCCLVN V GVK
Sbjct: 381 IGGGLGIDYYHAGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVIGVK 440
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
TNGTKNF+VIDGSMAELIRPSLYDAYQHIELVSP P DA+IS FDVVGPVCESADFLGK+
Sbjct: 441 TNGTKNFVVIDGSMAELIRPSLYDAYQHIELVSPPPSDAQISTFDVVGPVCESADFLGKD 500
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
RELPTP RGAGLVVHDAGAYCMSMAS+YNLKMRPPEYWV
Sbjct: 501 RELPTPPRGAGLVVHDAGAYCMSMASSYNLKMRPPEYWV 539
>gi|224080381|ref|XP_002306119.1| predicted protein [Populus trichocarpa]
gi|222849083|gb|EEE86630.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/452 (84%), Positives = 410/452 (90%), Gaps = 4/452 (0%)
Query: 10 SASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQ-NPAKSQTHTAP-VEHCF 67
S +L+ +L QN F K I P K T + LKP +LKAV+SQ NPA + +HCF
Sbjct: 14 SKTLTHSLNQNLFSKKSILPFKLTK--KNYLKPLSLKAVISQQNPATTTAQETTQFKHCF 71
Query: 68 SKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN 127
+K DGFL CE+++VQ++ME VEKRPFYLYSKPQITRNVEAYK AL+GLNSIIGYAIKAN
Sbjct: 72 TKSKDGFLCCENLKVQEIMENVEKRPFYLYSKPQITRNVEAYKDALQGLNSIIGYAIKAN 131
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVN 187
NN KILEHLR LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGKLL+DLVLAAQEGVFVN
Sbjct: 132 NNLKILEHLRGLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLDDLVLAAQEGVFVN 191
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
VDSEFDLENIV A+RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD
Sbjct: 192 VDSEFDLENIVAAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 251
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AVKAH +ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IRAQGFEVDYLNIGGGLGI
Sbjct: 252 AVKAHRDELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIRAQGFEVDYLNIGGGLGI 311
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
DYYH+GAVLP PR+LIDTVRELVLSR+LNLIIEPGRSLIANTCCLVN VTGVKTNGTKNF
Sbjct: 312 DYYHSGAVLPTPRDLIDTVRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNF 371
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+VIDGSMAELIRPSLYDAYQHIELVSPA AE+S FDVVGPVCESADFLGK+RELPTP
Sbjct: 372 VVIDGSMAELIRPSLYDAYQHIELVSPASPKAEVSTFDVVGPVCESADFLGKDRELPTPA 431
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 432 KGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 463
>gi|357483875|ref|XP_003612224.1| Diaminopimelate decarboxylase [Medicago truncatula]
gi|355513559|gb|AES95182.1| Diaminopimelate decarboxylase [Medicago truncatula]
Length = 483
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/464 (81%), Positives = 412/464 (88%), Gaps = 9/464 (1%)
Query: 1 MAATQLCSNSASLSK----ALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
M T L S+S SL K + T+NP P+ I PLK+ + T KP L+AVLS+ P ++
Sbjct: 1 MVGTHLLSHSCSLPKTFNHSFTKNPLPQNFILPLKS----KSTTKPIVLRAVLSKTPPET 56
Query: 57 QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
T +HCFSK DG+L+CE+++V ++ME+VEKRPFYLYSKPQITRNVEAYK ALEGL
Sbjct: 57 -TKITNFDHCFSKSEDGYLHCENLKVAEIMESVEKRPFYLYSKPQITRNVEAYKDALEGL 115
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
SIIGYAIKANNNYKILEHLR LGCGAVLVSGNEL+LALRAGFDPT+CIFNGNGK+LEDL
Sbjct: 116 TSIIGYAIKANNNYKILEHLRSLGCGAVLVSGNELKLALRAGFDPTRCIFNGNGKILEDL 175
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
VLAA+ GVFVN+DSEFDLENIV A+RIAGK+VNVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 176 VLAAEAGVFVNIDSEFDLENIVAAARIAGKRVNVLLRINPDVDPQVHPYVATGNKNSKFG 235
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
IRNEKLQWFLDAVK HP ELKLVGAHCHLGSTITKVDIFRDAA +MVNYID+IRAQGFEV
Sbjct: 236 IRNEKLQWFLDAVKEHPVELKLVGAHCHLGSTITKVDIFRDAATIMVNYIDEIRAQGFEV 295
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
DYLNIGGGLGIDYYH GAVLPKPR+LIDTVRELVLSR L LIIEPGRSLIANTCCLV+ V
Sbjct: 296 DYLNIGGGLGIDYYHAGAVLPKPRDLIDTVRELVLSRGLKLIIEPGRSLIANTCCLVSRV 355
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
TGVKTNG+KNFIVIDGSMAELIRPSLYDAYQHIELVSPAP +AEI+ FDVVGPVCESADF
Sbjct: 356 TGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPANAEITTFDVVGPVCESADF 415
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
LGK RELPTP +G GLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 416 LGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 459
>gi|297811305|ref|XP_002873536.1| hypothetical protein ARALYDRAFT_488028 [Arabidopsis lyrata subsp.
lyrata]
gi|297319373|gb|EFH49795.1| hypothetical protein ARALYDRAFT_488028 [Arabidopsis lyrata subsp.
lyrata]
Length = 492
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/474 (79%), Positives = 409/474 (86%), Gaps = 13/474 (2%)
Query: 2 AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
AATQ S +S+ L Q +IPI LK+TL + LK ++K+ +SQN S
Sbjct: 3 AATQFLSQPSSIRGTLNQYQLNQTSLSRIPILSLKSTL---KPLKRLSVKSAVSQNSQNS 59
Query: 57 -----QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQ 111
+ + +HCF K +DGFLYCE +VQD+ME+VE+RPFYLYSKPQITRN+EAYK+
Sbjct: 60 TKTLTKESASSFDHCFKKSSDGFLYCEGTKVQDIMESVERRPFYLYSKPQITRNLEAYKE 119
Query: 112 ALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 171
ALEG+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK
Sbjct: 120 ALEGVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 179
Query: 172 LLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNK 231
LLEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNK
Sbjct: 180 LLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNK 239
Query: 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 291
NSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR
Sbjct: 240 NSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRR 299
Query: 292 QGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCC 351
QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC
Sbjct: 300 QGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCC 359
Query: 352 LVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVC 411
VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE+SKFDVVGPVC
Sbjct: 360 FVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVSKFDVVGPVC 419
Query: 412 ESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
ESADFLGK+RELPTP +GA LVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 420 ESADFLGKDRELPTPPQGACLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 473
>gi|18416698|ref|NP_568252.1| diaminopimelate decarboxylase 2 [Arabidopsis thaliana]
gi|75306321|sp|Q94A94.1|DCDA2_ARATH RecName: Full=Diaminopimelate decarboxylase 2, chloroplastic;
Short=DAP decarboxylase 2; Short=DAPDC 2; Flags:
Precursor
gi|15146250|gb|AAK83608.1| AT5g11880/F14F18_50 [Arabidopsis thaliana]
gi|22655428|gb|AAM98306.1| At5g11880/F14F18_50 [Arabidopsis thaliana]
gi|332004351|gb|AED91734.1| diaminopimelate decarboxylase 2 [Arabidopsis thaliana]
Length = 489
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/471 (80%), Positives = 407/471 (86%), Gaps = 10/471 (2%)
Query: 2 AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
A TQ S +S+ L Q +IP LK+TL + LK ++KA +SQN K+
Sbjct: 3 AVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKT 59
Query: 57 QTH--TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
T + +HCF K +DGFLYCE +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALE
Sbjct: 60 LTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALE 119
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LE
Sbjct: 120 GVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLE 179
Query: 175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
DLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSK
Sbjct: 180 DLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSK 239
Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
FGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGF
Sbjct: 240 FGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF 299
Query: 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN 354
EV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VN
Sbjct: 300 EVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVN 359
Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESA
Sbjct: 360 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVVGPVCESA 419
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
DFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 420 DFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 470
>gi|397787606|gb|AFO66512.1| putative diaminopimelate decarboxylase [Brassica napus]
Length = 485
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/467 (81%), Positives = 408/467 (87%), Gaps = 6/467 (1%)
Query: 2 AATQLCSNSASLSKALT--QNPFPKIPISPLKTTLNFQRTLKPFTLKAVL-SQNPAKSQT 58
++TQL S SL L Q+ P+I I LK+T + L +LKA SQN K+ T
Sbjct: 3 SSTQLLSQPPSLRGNLNRYQSSLPRISILSLKST---SKPLNRLSLKATAASQNSVKTPT 59
Query: 59 HTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNS 118
A +HCF K +DGFLYCE +V+D+ME+VE+RPFYLYSKPQITRNVEAYK+ALEG+ S
Sbjct: 60 KDAAFKHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNVEAYKEALEGVRS 119
Query: 119 IIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVL 178
+IGYAIKANNN KILEHLR GCGAVLVSGNELRLAL AGFDPTKCIFNGNGKLLEDLVL
Sbjct: 120 VIGYAIKANNNLKILEHLRSKGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKLLEDLVL 179
Query: 179 AAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
AAQEGVFVNVDSEFDLENIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGIR
Sbjct: 180 AAQEGVFVNVDSEFDLENIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 239
Query: 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
NEKLQWFLD VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMV YID+IR QGFEV Y
Sbjct: 240 NEKLQWFLDEVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVEYIDEIRRQGFEVSY 299
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
LNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVTG
Sbjct: 300 LNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVTG 359
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP +AE+SKFDVVGPVCESADFLG
Sbjct: 360 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPAPEAEVSKFDVVGPVCESADFLG 419
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
K+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 420 KDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSI 466
>gi|359806600|ref|NP_001241015.1| uncharacterized protein LOC100786832 [Glycine max]
gi|255636652|gb|ACU18663.1| unknown [Glycine max]
Length = 488
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/467 (80%), Positives = 409/467 (87%), Gaps = 10/467 (2%)
Query: 1 MAATQLCSNSASLSK----ALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
MA + L S+S SL K +L QNP + P L F+ T KP L+AVLSQN AK+
Sbjct: 1 MAGSHLLSHSPSLPKTYNYSLNQNPLSQNLFFP---PLKFKSTTKPRVLRAVLSQNAAKT 57
Query: 57 ---QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL 113
T A +HCF+K DG+LYCE ++V D+ME+VE+RPFYLYSKPQITRNVEAYK AL
Sbjct: 58 AVEDTKNAHFQHCFTKSEDGYLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYKDAL 117
Query: 114 EGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLL 173
EGL+SIIGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK+L
Sbjct: 118 EGLSSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKIL 177
Query: 174 EDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233
EDLVLAAQEGVFVN+DSEFDLENI A++ AGKKVNVLLRINPDVDPQVHPYVATGNKNS
Sbjct: 178 EDLVLAAQEGVFVNIDSEFDLENITEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKNS 237
Query: 234 KFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQG 293
KFGIRNEKLQWFLDAVK PNELKLVGAHCHLGSTITKVDIFRDAA +M+NYID+IR QG
Sbjct: 238 KFGIRNEKLQWFLDAVKELPNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRDQG 297
Query: 294 FEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLV 353
FEVDYLNIGGGLGIDYYH+GA+LP PR+LIDTVR+LV+SR LNLIIEPGRSLIANTCCLV
Sbjct: 298 FEVDYLNIGGGLGIDYYHSGAILPTPRDLIDTVRDLVISRGLNLIIEPGRSLIANTCCLV 357
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
N VTGVK+NG+KNFIVIDGSMAELIRPSLYDAYQHIELVSPAP +AE + FDVVGPVCES
Sbjct: 358 NRVTGVKSNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPSNAETTTFDVVGPVCES 417
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
ADFLGK RELPTP +G GLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 418 ADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVE 464
>gi|9279586|dbj|BAB01044.1| unnamed protein product [Arabidopsis thaliana]
Length = 526
Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/469 (80%), Positives = 412/469 (87%), Gaps = 11/469 (2%)
Query: 2 AATQLCSNSASLS----KALTQNPFPKIPISPLKTTLNFQRTLKPFTLKA-VLSQNPAKS 56
AATQ S +SL+ K T IP+ LK+TL + LK ++KA V+SQN +K+
Sbjct: 45 AATQFLSQPSSLNPHQLKNQTSQRSRSIPVLSLKSTL---KPLKRLSVKAAVVSQNSSKT 101
Query: 57 QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
T +HCF K +DGFLYCE +V+D+ME+VE+RPFYLYSKPQITRN+EAYK+ALEG+
Sbjct: 102 VTK---FDHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGV 158
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
+S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDL
Sbjct: 159 SSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDL 218
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
VLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 219 VLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFG 278
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
IRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV
Sbjct: 279 IRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEV 338
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHV
Sbjct: 339 SYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHV 398
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESADF
Sbjct: 399 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPAEAEVTKFDVVGPVCESADF 458
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
LGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 459 LGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 507
>gi|15231844|ref|NP_188056.1| diaminopimelate decarboxylase 1 [Arabidopsis thaliana]
gi|75306310|sp|Q949X7.1|DCDA1_ARATH RecName: Full=Diaminopimelate decarboxylase 1, chloroplastic;
Short=DAP decarboxylase 1; Short=DAPDC 1; Flags:
Precursor
gi|18026845|gb|AAL55653.1|AF227913_1 diaminopimelate decarboxylase [Arabidopsis thaliana]
gi|15292779|gb|AAK92758.1| putative diaminopimelate decarboxylase [Arabidopsis thaliana]
gi|21594037|gb|AAM65955.1| putative diaminopimelate decarboxylase [Arabidopsis thaliana]
gi|21689775|gb|AAM67531.1| putative diaminopimelate decarboxylase [Arabidopsis thaliana]
gi|332641990|gb|AEE75511.1| diaminopimelate decarboxylase 1 [Arabidopsis thaliana]
Length = 484
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/469 (80%), Positives = 412/469 (87%), Gaps = 11/469 (2%)
Query: 2 AATQLCSNSASLS----KALTQNPFPKIPISPLKTTLNFQRTLKPFTLKA-VLSQNPAKS 56
AATQ S +SL+ K T IP+ LK+TL + LK ++KA V+SQN +K+
Sbjct: 3 AATQFLSQPSSLNPHQLKNQTSQRSRSIPVLSLKSTL---KPLKRLSVKAAVVSQNSSKT 59
Query: 57 QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
T +HCF K +DGFLYCE +V+D+ME+VE+RPFYLYSKPQITRN+EAYK+ALEG+
Sbjct: 60 VTK---FDHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGV 116
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
+S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDL
Sbjct: 117 SSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDL 176
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
VLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 177 VLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
IRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV
Sbjct: 237 IRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEV 296
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHV
Sbjct: 297 SYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHV 356
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESADF
Sbjct: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPAEAEVTKFDVVGPVCESADF 416
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
LGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 417 LGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 465
>gi|397787629|gb|AFO66534.1| putative diaminopimelate decarboxylase [Brassica napus]
Length = 485
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/468 (80%), Positives = 409/468 (87%), Gaps = 8/468 (1%)
Query: 2 AATQLCSNSASLSKALT--QNPFPKIPISPLKTTLNFQRTLKPFTLKAVL--SQNPAKSQ 57
++TQL S SL L Q+ P+I + LK+T + L ++KA SQN K+
Sbjct: 3 SSTQLLSQPPSLRGNLNRYQSSLPRISVLSLKST---SKPLNRLSVKATAAASQNSVKTP 59
Query: 58 THTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN 117
T A EHCF K +DGFLYCE +V+++ME+VE+RPFYLYSKPQITRNVEAYK+ALEG++
Sbjct: 60 TKDA-FEHCFKKSSDGFLYCEGTKVEEIMESVERRPFYLYSKPQITRNVEAYKEALEGVS 118
Query: 118 SIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV 177
S+IGYAIKANNN KILEHLR GCGAVLVSGNELRLAL AGFDPTKCIFNGNGKLLEDLV
Sbjct: 119 SVIGYAIKANNNLKILEHLRSKGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKLLEDLV 178
Query: 178 LAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237
LAAQEGVFVNVDSEFDLENIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFGI
Sbjct: 179 LAAQEGVFVNVDSEFDLENIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGI 238
Query: 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVD 297
RNEKLQWFLD VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMV YID+IR QGFEV
Sbjct: 239 RNEKLQWFLDEVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVEYIDEIRRQGFEVS 298
Query: 298 YLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVT 357
YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHVT
Sbjct: 299 YLNIGGGLGIDYYHAGAVLPTPVDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHVT 358
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP +AE+SKFDVVGPVCESADFL
Sbjct: 359 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPAPEAEVSKFDVVGPVCESADFL 418
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
GK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 419 GKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSI 466
>gi|363808260|ref|NP_001241982.1| uncharacterized protein LOC100809499 [Glycine max]
gi|255671797|gb|ACU26531.1| diaminopimelate decarboxylase [Glycine max]
Length = 488
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/468 (79%), Positives = 409/468 (87%), Gaps = 12/468 (2%)
Query: 1 MAATQLCSNSASL----SKALTQNPFP-KIPISPLKTTLNFQRTLKPFTLKAVLSQNPAK 55
MA + + S+S SL S +L QN K+ PLK F+ T KP L+AVLSQN K
Sbjct: 1 MAGSNILSHSPSLPKTYSHSLNQNALSQKLFFLPLK----FKATTKPRALRAVLSQNAVK 56
Query: 56 SQ---THTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQA 112
+ T A +HCF+K DG+LYCE ++V D+ME+VE+RPFYLYSKPQITRNVEAYK A
Sbjct: 57 TSVEDTKNAHFQHCFTKSEDGYLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYKDA 116
Query: 113 LEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL 172
LEGLNSIIGYAIKANN+ KILEHLR LGCGAVLVSGNEL+LALRAGFDPT+CIFNGNGK+
Sbjct: 117 LEGLNSIIGYAIKANNDLKILEHLRHLGCGAVLVSGNELKLALRAGFDPTRCIFNGNGKI 176
Query: 173 LEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232
LEDLVLAAQEGVFVN+DSEFDLENIV A++ AGKKVNVLLRINPDVDPQVHPYVATGNKN
Sbjct: 177 LEDLVLAAQEGVFVNIDSEFDLENIVEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKN 236
Query: 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
SKFGIRNEKLQ FLDAVK HPNELKLVGAHCHLGSTITKVDIFRDAA +M+NYID+IR Q
Sbjct: 237 SKFGIRNEKLQCFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRDQ 296
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCL 352
GFEVDYLNIGGGLGIDYYH+GA+LP PR+LIDTVR+LV+SR LNLIIEPGRSLIANTCCL
Sbjct: 297 GFEVDYLNIGGGLGIDYYHSGAILPTPRDLIDTVRDLVISRGLNLIIEPGRSLIANTCCL 356
Query: 353 VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCE 412
VN VTGVKTNG+KNFIVIDGSMAELIRPSLYDAYQHIELVSPAP +AE FDVVGPVCE
Sbjct: 357 VNRVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPSNAETETFDVVGPVCE 416
Query: 413 SADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
SADFLGK RELPTP +G GLVVHDAGAYCMS+ASTYNLKMRPPEYWV
Sbjct: 417 SADFLGKGRELPTPAKGTGLVVHDAGAYCMSIASTYNLKMRPPEYWVE 464
>gi|356548256|ref|XP_003542519.1| PREDICTED: diaminopimelate decarboxylase 1, chloroplastic-like
[Glycine max]
Length = 488
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/464 (79%), Positives = 408/464 (87%), Gaps = 6/464 (1%)
Query: 1 MAATQLCSNSASLSKALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQN-PAKSQTH 59
MAA+ + N LSK +P + P SP L + T+KP L+AV SQ A S H
Sbjct: 1 MAASHILYNPPPLSKTFINHPLNQNP-SPQNLILPLKATIKPRVLRAVHSQKITANSSLH 59
Query: 60 TAPV----EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEG 115
+ +HCF+K DG LYCE ++V ++M++VE+RPFYLYSKPQITRNVEAYK ALEG
Sbjct: 60 NSDTRTRFQHCFTKSEDGLLYCEGLKVHEIMDSVERRPFYLYSKPQITRNVEAYKDALEG 119
Query: 116 LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
L SIIGYAIKANNN KILEHLR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK+L+D
Sbjct: 120 LRSIIGYAIKANNNLKILEHLRQLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKVLDD 179
Query: 176 LVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235
LVLAA+EGVFVN+DSEFDLENI+ A++IA K+VNVLLRINPDVDPQVHPYVATGNKNSKF
Sbjct: 180 LVLAAKEGVFVNIDSEFDLENIIAAAKIAQKRVNVLLRINPDVDPQVHPYVATGNKNSKF 239
Query: 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE 295
GIRNEKLQWFLDAVK HPNELKLVGAHCHLGSTITKVDIFRDAA++MVNYID+IRAQGFE
Sbjct: 240 GIRNEKLQWFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAAIIMVNYIDQIRAQGFE 299
Query: 296 VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNH 355
VDYLNIGGGLGIDY H+GAVLP PR+LIDTVRELVLSR LNLIIEPGRSL+ANTCCLVN
Sbjct: 300 VDYLNIGGGLGIDYQHSGAVLPTPRDLIDTVRELVLSRGLNLIIEPGRSLVANTCCLVNR 359
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
VTGVKTNG+KNFIVIDGSMAELIRPSLYDAYQHIELVSPAP +AEI+ FDVVGPVCESAD
Sbjct: 360 VTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPANAEIANFDVVGPVCESAD 419
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
FLGK+R+LPTP +G GLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 420 FLGKDRQLPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWV 463
>gi|297829990|ref|XP_002882877.1| hypothetical protein ARALYDRAFT_478856 [Arabidopsis lyrata subsp.
lyrata]
gi|297328717|gb|EFH59136.1| hypothetical protein ARALYDRAFT_478856 [Arabidopsis lyrata subsp.
lyrata]
Length = 485
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/470 (80%), Positives = 410/470 (87%), Gaps = 12/470 (2%)
Query: 2 AATQLCSN-SASLSKALTQNPFPK----IPISPLKTTLNFQRTLKPFTLKAV-LSQNPAK 55
AATQ S S+SL+ +N + IPI LK+TL + LK ++KA +SQN K
Sbjct: 3 AATQCLSQPSSSLNPYQLKNQTSQLSRIIPIFSLKSTL---KPLKRLSVKATAVSQNSTK 59
Query: 56 SQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEG 115
+ T +HCF K +DGFLYCE +V+D+ME+VE+RPFYLYSKPQITRN+EAYK+ALEG
Sbjct: 60 TLTK---FDHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEG 116
Query: 116 LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
+ S+IGYAIKANNN KILEHLR L CGAVLVSGNELRLAL AGFDPTKCIFNGNGKLLED
Sbjct: 117 VTSVIGYAIKANNNLKILEHLRSLSCGAVLVSGNELRLALLAGFDPTKCIFNGNGKLLED 176
Query: 176 LVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235
LVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKF
Sbjct: 177 LVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKF 236
Query: 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE 295
GIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFE
Sbjct: 237 GIRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFE 296
Query: 296 VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNH 355
V YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNH
Sbjct: 297 VSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNH 356
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESAD
Sbjct: 357 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPEAEVTKFDVVGPVCESAD 416
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
FLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 417 FLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 466
>gi|7573355|emb|CAB87661.1| diaminopimelate decarboxylase-like protein [Arabidopsis thaliana]
Length = 496
Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/478 (78%), Positives = 404/478 (84%), Gaps = 17/478 (3%)
Query: 2 AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
A TQ S +S+ L Q +IP LK+TL + LK ++KA +SQN K+
Sbjct: 3 AVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKT 59
Query: 57 QTH--TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
T + +HCF K +DGFLYCE +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALE
Sbjct: 60 LTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALE 119
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPT-------KCIFN 167
G+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL A FD +CIFN
Sbjct: 120 GVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAVFDHVFGVDEMNRCIFN 179
Query: 168 GNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVA 227
GNGK LEDLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVA
Sbjct: 180 GNGKSLEDLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVA 239
Query: 228 TGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID 287
TGNKNSKFGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID
Sbjct: 240 TGNKNSKFGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYID 299
Query: 288 KIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIA 347
+IR QGFEV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIA
Sbjct: 300 EIRRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIA 359
Query: 348 NTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVV 407
NTCC VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVV
Sbjct: 360 NTCCFVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVV 419
Query: 408 GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
GPVCESADFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 420 GPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 477
>gi|297744419|emb|CBI37681.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/374 (92%), Positives = 361/374 (96%)
Query: 86 METVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVL 145
M+ VEKRPFYLYSKPQITRN EAYK+ALEGL SIIGYAIKANNN KILEHLR+LGCGAVL
Sbjct: 1 MDQVEKRPFYLYSKPQITRNFEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVL 60
Query: 146 VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG 205
VSGNELRLALRAGFDPT+CIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL+NI+ A+RIAG
Sbjct: 61 VSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAG 120
Query: 206 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265
KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL
Sbjct: 121 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 180
Query: 266 GSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT 325
GSTITKVDIFRDAAVLMVNYID+IRAQGFE+ YLNIGGGLGIDYYH GAVLP PR+LIDT
Sbjct: 181 GSTITKVDIFRDAAVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDT 240
Query: 326 VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDA 385
VRELVLSR+LNLIIEPGRSLIANTCCLVN VTGVKTNGTKNF+VIDGSMAELIRPSLYDA
Sbjct: 241 VRELVLSRDLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFVVIDGSMAELIRPSLYDA 300
Query: 386 YQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA 445
YQHIELVSP P DA+IS FDVVGPVCESADFLGK+RELPTP RGAGLVVHDAGAYCMSMA
Sbjct: 301 YQHIELVSPPPSDAQISTFDVVGPVCESADFLGKDRELPTPPRGAGLVVHDAGAYCMSMA 360
Query: 446 STYNLKMRPPEYWV 459
STYNLKMRPPEYWV
Sbjct: 361 STYNLKMRPPEYWV 374
>gi|297745130|emb|CBI38969.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/374 (91%), Positives = 358/374 (95%)
Query: 86 METVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVL 145
M VEKRPFYLYSKPQI RN EAY++ALEGL SIIGYAIKANNN KILEHLR+LGCGAVL
Sbjct: 1 MNQVEKRPFYLYSKPQIARNFEAYREALEGLRSIIGYAIKANNNLKILEHLRELGCGAVL 60
Query: 146 VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG 205
VSGNELRLALRAGFDPT+CIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL+NI+ A+RIAG
Sbjct: 61 VSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAG 120
Query: 206 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265
KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL
Sbjct: 121 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 180
Query: 266 GSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT 325
GSTITKVDIFRDAAVLMVNYID+IRAQGFE+ YLNIGGGLGIDYYH GAVLP PR+LIDT
Sbjct: 181 GSTITKVDIFRDAAVLMVNYIDEIRAQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDT 240
Query: 326 VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDA 385
VRELVLSR+LNLIIEPGRSLIANTCCLVN V GVKTNGTKNF+VIDGSMAELIRPSLYDA
Sbjct: 241 VRELVLSRDLNLIIEPGRSLIANTCCLVNRVIGVKTNGTKNFVVIDGSMAELIRPSLYDA 300
Query: 386 YQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA 445
YQHIELVSP P DA+IS FDVVGPVCESADFLGK+RELPTP RGAGLVVHDAGAYCMSMA
Sbjct: 301 YQHIELVSPPPSDAQISTFDVVGPVCESADFLGKDRELPTPPRGAGLVVHDAGAYCMSMA 360
Query: 446 STYNLKMRPPEYWV 459
S+YNLKMRPPEYWV
Sbjct: 361 SSYNLKMRPPEYWV 374
>gi|356537565|ref|XP_003537297.1| PREDICTED: LOW QUALITY PROTEIN: diaminopimelate decarboxylase 2,
chloroplastic-like [Glycine max]
Length = 490
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/481 (74%), Positives = 399/481 (82%), Gaps = 22/481 (4%)
Query: 1 MAATQLCSNSASLSK-----ALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQ---- 51
MAA+ + N SLSK +L QNPFP+ I PLK T+ KP L+ V SQ
Sbjct: 1 MAASHVLYNPPSLSKTFINHSLNQNPFPQNLILPLKATI------KPRVLRVVHSQKIIA 54
Query: 52 NPAKSQTHTAP-VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYK 110
NP+ + T H F+K DGFLYCE ++V ++M++VE+ FYL SKP+ITRNVEAYK
Sbjct: 55 NPSLHDSDTKTHFRHYFTKSEDGFLYCEGLKVHEIMDSVERTHFYLSSKPEITRNVEAYK 114
Query: 111 QALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170
ALE L SIIGYAIKANNN KILEHLR+LGCGAVLVSGNE LAL AGFDPT+CIFNGNG
Sbjct: 115 DALECLRSIIGYAIKANNNLKILEHLRQLGCGAVLVSGNEFSLALHAGFDPTRCIFNGNG 174
Query: 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230
K+L+DLVLAA+EGVFVN+DSEFDLENIV A +IA K+VNVLLRINPDVDPQVHPYVATGN
Sbjct: 175 KILDDLVLAAKEGVFVNIDSEFDLENIVAAPKIAXKRVNVLLRINPDVDPQVHPYVATGN 234
Query: 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 290
KNSKFGIRNEKLQWFLDAVK HPNELKLVGAHCHLGSTITKVDIFRDAA++MVNYID+I+
Sbjct: 235 KNSKFGIRNEKLQWFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAAIIMVNYIDQIQ 294
Query: 291 AQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTC 350
AQGF+VDYLNIGGGLGIDY H+GAVLP PR+LID+ +L R LNLIIEP RSLIAN C
Sbjct: 295 AQGFQVDYLNIGGGLGIDYQHSGAVLPTPRDLIDS-EDLTSDRGLNLIIEPERSLIANIC 353
Query: 351 CLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPV 410
CLVN VTGVKTNG+KNFIVIDGSMAELI PSLYDAY HIELVSPAP DAEI+KFDV+GPV
Sbjct: 354 CLVNRVTGVKTNGSKNFIVIDGSMAELIHPSLYDAYXHIELVSPAPADAEIAKFDVLGPV 413
Query: 411 CESADFLGKERELPTPDRG-----AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
CESADF GK+R+LPTP + + LVVHDAGAYCMSMASTYNLKMRPPEYWVR+ +S
Sbjct: 414 CESADFFGKDRQLPTPAKFHFAWYSCLVVHDAGAYCMSMASTYNLKMRPPEYWVRNCVSK 473
Query: 466 I 466
I
Sbjct: 474 I 474
>gi|115445929|ref|NP_001046744.1| Os02g0440000 [Oryza sativa Japonica Group]
gi|75294265|sp|Q6ZG77.1|DCDA_ORYSJ RecName: Full=Probable diaminopimelate decarboxylase,
chloroplastic; Short=DAP decarboxylase; Short=DAPDC;
Flags: Precursor
gi|46805542|dbj|BAD16980.1| putative diaminopimelate decarboxylase [Oryza sativa Japonica
Group]
gi|113536275|dbj|BAF08658.1| Os02g0440000 [Oryza sativa Japonica Group]
gi|215695077|dbj|BAG90268.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 490
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/402 (80%), Positives = 363/402 (90%), Gaps = 1/402 (0%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+ CF + ADG LYCE VRV+D M E+ PFYLYSKPQ+ RN AY+ ALEGL SI+GYA
Sbjct: 69 KRCFRRGADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYA 128
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN ++L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ G
Sbjct: 129 VKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESG 188
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 189 VFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 248
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFLD++K++ N++ LVG HCHLGSTITKVDIFRDAA LMVNY+D+IRAQGFE++YLNIGG
Sbjct: 249 WFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRAQGFELEYLNIGG 308
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLSR+L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 309 GLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 368
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP+P DAE++ FD+VGPVCESADFLGK+REL
Sbjct: 369 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPSP-DAEVATFDIVGPVCESADFLGKDREL 427
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
PTPD+GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI
Sbjct: 428 PTPDKGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEDDGSI 469
>gi|195619652|gb|ACG31656.1| diaminopimelate decarboxylase [Zea mays]
Length = 488
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/467 (71%), Positives = 387/467 (82%), Gaps = 8/467 (1%)
Query: 8 SNSASLSKALTQNPFPKIPISPLKTT---LNFQRTLKPFTLKAVLSQNPAKSQTHTAPV- 63
++++ L+++L + P P P + + ++F R + +++A +S A
Sbjct: 2 ASASMLARSLLRTPDPTQTSHPNRRSAAVVSFPRRHRRLSVRASVSTACPSPPPQPAAAA 61
Query: 64 ----EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSI 119
+HCF + ADG+LYCE VRV+D M E+ PFYLYSKPQI RN AY+ AL+GL SI
Sbjct: 62 AGVPKHCFRRGADGYLYCEGVRVEDAMTAAERSPFYLYSKPQILRNFAAYRDALQGLRSI 121
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
IGYA+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK LEDL LA
Sbjct: 122 IGYAVKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTLEDLKLA 181
Query: 180 AQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239
A+ GVFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRN
Sbjct: 182 AESGVFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRN 241
Query: 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
EKLQWFLD++K++PNE+KLVG HCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGF+++YL
Sbjct: 242 EKLQWFLDSIKSYPNEIKLVGVHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFKLEYL 301
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
NIGGGLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGV
Sbjct: 302 NIGGGLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGV 361
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K+NGTKNFIV+DGSMAELIRPSLY AYQHIELVSP AE++ FD+VGPVCESADFLGK
Sbjct: 362 KSNGTKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEVATFDIVGPVCESADFLGK 421
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
+RELPTPD GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV + SI+
Sbjct: 422 DRELPTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEADGSIV 468
>gi|357143808|ref|XP_003573060.1| PREDICTED: probable diaminopimelate decarboxylase,
chloroplastic-like [Brachypodium distachyon]
Length = 488
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/416 (77%), Positives = 367/416 (88%), Gaps = 1/416 (0%)
Query: 50 SQNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAY 109
S P + + AP + CF + DG LYCE VRV++ + E+ PFYLYSKPQ+ RN AY
Sbjct: 53 SLRPEAAASGEAP-KRCFRRGDDGHLYCEGVRVEEAIAAAERTPFYLYSKPQVVRNFTAY 111
Query: 110 KQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGN 169
++ALEGL SI+GYA+KANNN ++L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGN
Sbjct: 112 QEALEGLRSIVGYAVKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGN 171
Query: 170 GKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATG 229
GK LEDLVLAA+ GVFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATG
Sbjct: 172 GKTLEDLVLAAESGVFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATG 231
Query: 230 NKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 289
NK SKFGIRNEKLQWFLD++K++PN++KLVG HCHLGSTITKVDIFRDAAVLMVN++D+I
Sbjct: 232 NKTSKFGIRNEKLQWFLDSIKSYPNDIKLVGVHCHLGSTITKVDIFRDAAVLMVNFVDEI 291
Query: 290 RAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANT 349
RAQGFE++YLNIGGGLGIDY H A+LP P +LI+TVRELVLSR+L LIIEPGRSLIANT
Sbjct: 292 RAQGFELEYLNIGGGLGIDYEHKDAILPTPMDLINTVRELVLSRDLTLIIEPGRSLIANT 351
Query: 350 CCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGP 409
CC VN VTGVKTNGTKNFIV+DGSMAELIRPSLY AYQHIELVS DAE++ FD+VGP
Sbjct: 352 CCFVNKVTGVKTNGTKNFIVVDGSMAELIRPSLYGAYQHIELVSSPSPDAELATFDIVGP 411
Query: 410 VCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
VCESADFLGK+RELPTPD+GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI
Sbjct: 412 VCESADFLGKDRELPTPDKGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEEDGSI 467
>gi|224284657|gb|ACN40061.1| unknown [Picea sitchensis]
Length = 488
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/449 (72%), Positives = 377/449 (83%), Gaps = 5/449 (1%)
Query: 16 ALTQNPFPKIPISPLKTTLNF--QRTLKPFTLKAVLSQNPAKSQ--THTAPVEHCFSKKA 71
A+ NPF K P L+++ +F R P V+ Q + + + +HCF K
Sbjct: 17 AILSNPF-KAPAKSLRSSESFVASRVSIPRRTGEVIRQFSVQCRQGVSSRTFQHCFRKNR 75
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DGF+YCE VR+QDV++T+E+RPFYLYSKPQITRN EAY+ AL+GL+SIIGYA+KANNN K
Sbjct: 76 DGFMYCEGVRLQDVIDTMERRPFYLYSKPQITRNYEAYENALKGLDSIIGYAVKANNNLK 135
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
ILEHLR LG GAVLVSGNELRLAL AGFDP++CIFNGNGKLL+DLVLAA EGV VN+DSE
Sbjct: 136 ILEHLRSLGSGAVLVSGNELRLALNAGFDPSRCIFNGNGKLLDDLVLAANEGVLVNIDSE 195
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
FDLENIV A++IA KKV VLLRINPDVDP+VHPYVATGNKNSKFGIRNEKLQWFLD VKA
Sbjct: 196 FDLENIVEAAKIAKKKVQVLLRINPDVDPEVHPYVATGNKNSKFGIRNEKLQWFLDTVKA 255
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
HPNEL LVGAHCHLGSTITKV+IF+DAAVLM+ YID+IRAQGFE+ YLNIGGGLGIDY+H
Sbjct: 256 HPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGLGIDYHH 315
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G VLP P +LI++VR+LV+S NL LI+EPGRSL+AN+ LV+ V GVKTNG KNFIV+D
Sbjct: 316 KGEVLPTPMDLINSVRKLVISGNLTLIVEPGRSLVANSGVLVSRVVGVKTNGNKNFIVMD 375
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
GSMAELIRPSLY AYQHIEL+SP A+I FDVVGPVCESADFLGK+RELPTP AG
Sbjct: 376 GSMAELIRPSLYGAYQHIELISPPAPKAKIQTFDVVGPVCESADFLGKDRELPTPAMWAG 435
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+VVHDAGAYCMSMASTYNL+MRP EYW++
Sbjct: 436 MVVHDAGAYCMSMASTYNLRMRPAEYWIQ 464
>gi|226509744|ref|NP_001141045.1| uncharacterized protein LOC100273126 [Zea mays]
gi|194702382|gb|ACF85275.1| unknown [Zea mays]
gi|413916130|gb|AFW56062.1| diaminopimelate decarboxylase [Zea mays]
Length = 488
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/403 (79%), Positives = 358/403 (88%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+HCF + ADG+LYCE VRV+D M E+ PFYLYSKPQI RN AY+ AL+GL SIIGYA
Sbjct: 66 KHCFRRGADGYLYCEGVRVEDAMTAAERSPFYLYSKPQILRNFAAYRDALQGLRSIIGYA 125
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK LE L LAA+ G
Sbjct: 126 VKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTLEHLKLAAESG 185
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 186 VFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 245
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFLD++K++PNE+KLVG HCHLGSTITKVDIFRDAAVLM+NY+D+IRAQGF+++YLNIGG
Sbjct: 246 WFLDSIKSYPNEIKLVGVHCHLGSTITKVDIFRDAAVLMLNYVDEIRAQGFKLEYLNIGG 305
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 306 GLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 365
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP AE + FD+VGPVCESADFLGK+REL
Sbjct: 366 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEAATFDIVGPVCESADFLGKDREL 425
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
PTPD GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV + SI+
Sbjct: 426 PTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEADGSIV 468
>gi|148910718|gb|ABR18426.1| unknown [Picea sitchensis]
Length = 488
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/449 (72%), Positives = 377/449 (83%), Gaps = 5/449 (1%)
Query: 16 ALTQNPFPKIPISPLKTTLNF--QRTLKPFTLKAVLSQNPAKSQ--THTAPVEHCFSKKA 71
A+ NPF K P L+++ +F R P V+ Q + + + +HCF K
Sbjct: 17 AILSNPF-KAPAKSLRSSESFVASRVSIPRRTGEVIRQFSVQCRQGVSSRTFQHCFRKNR 75
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DGF+YCE VR+Q+V++T+E+RPFYLYSKPQITRN EAY+ AL+GL+SIIGYA+KANNN K
Sbjct: 76 DGFMYCEGVRLQNVIDTMERRPFYLYSKPQITRNYEAYENALKGLDSIIGYAVKANNNLK 135
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
ILEHLR LG GAVLVSGNELRLAL AGFDP++CIFNGNGKLL+DLVLAA EGV VN+DSE
Sbjct: 136 ILEHLRSLGSGAVLVSGNELRLALNAGFDPSRCIFNGNGKLLDDLVLAANEGVLVNIDSE 195
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
FDLENIV A++IA KKV VLLRINPDVDP+VHPYVATGNKNSKFGIRNEKLQWFLD VKA
Sbjct: 196 FDLENIVEAAKIAKKKVQVLLRINPDVDPEVHPYVATGNKNSKFGIRNEKLQWFLDTVKA 255
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
HPNEL LVGAHCHLGSTITKV+IF+DAAVLM+ YID+IRAQGFE+ YLNIGGGLGIDY+H
Sbjct: 256 HPNELNLVGAHCHLGSTITKVNIFKDAAVLMIQYIDQIRAQGFEIKYLNIGGGLGIDYHH 315
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G VLP P +LI++VR+LV+S NL LI+EPGRSL+AN+ LV+ V GVKTNG KNFIV+D
Sbjct: 316 KGEVLPTPMDLINSVRKLVISGNLTLIVEPGRSLVANSGVLVSRVVGVKTNGNKNFIVMD 375
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
GSMAELIRPSLY AYQHIEL+SP A+I FDVVGPVCESADFLGK+RELPTP AG
Sbjct: 376 GSMAELIRPSLYGAYQHIELISPPAPKAKIQTFDVVGPVCESADFLGKDRELPTPAMWAG 435
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+VVHDAGAYCMSMASTYNL+MRP EYW++
Sbjct: 436 MVVHDAGAYCMSMASTYNLRMRPAEYWIQ 464
>gi|242084786|ref|XP_002442818.1| hypothetical protein SORBIDRAFT_08g003330 [Sorghum bicolor]
gi|241943511|gb|EES16656.1| hypothetical protein SORBIDRAFT_08g003330 [Sorghum bicolor]
Length = 489
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/403 (78%), Positives = 357/403 (88%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+HCF + ADG+LYCE VRV+D M E+ PFYLYSKPQI RN AY+ AL+GL SI+GYA
Sbjct: 67 KHCFRRGADGYLYCEGVRVEDAMAAAERSPFYLYSKPQILRNFAAYRDALQGLRSIVGYA 126
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK EDL LAA+ G
Sbjct: 127 VKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTFEDLKLAAESG 186
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 187 VFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 246
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFLD++K++P+E+KLVG HCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGF+++YLNIGG
Sbjct: 247 WFLDSIKSYPDEIKLVGVHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFKLEYLNIGG 306
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 307 GLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 366
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP AE++ FD+VGPVCESADFLGK+REL
Sbjct: 367 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEVATFDIVGPVCESADFLGKDREL 426
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
P PD GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI+
Sbjct: 427 PKPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEEDGSIV 469
>gi|195624020|gb|ACG33840.1| diaminopimelate decarboxylase [Zea mays]
gi|224030925|gb|ACN34538.1| unknown [Zea mays]
gi|414882138|tpg|DAA59269.1| TPA: diaminopimelate decarboxylase [Zea mays]
Length = 486
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/403 (78%), Positives = 357/403 (88%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+HCF + ADG+LYCE VRV+D M E+ PFYLYSK QI RN AY+ AL+GL SI+GYA
Sbjct: 64 KHCFRRGADGYLYCEGVRVEDAMAAAERSPFYLYSKLQILRNFAAYRDALQGLRSIVGYA 123
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK LEDL LAA+ G
Sbjct: 124 VKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTLEDLKLAAESG 183
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 184 VFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 243
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFL+++K++ NE+KLVG HCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGF+++YLNIGG
Sbjct: 244 WFLNSIKSYSNEIKLVGVHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFKLEYLNIGG 303
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 304 GLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 363
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP AE++ FD+VGPVCESADFLGK+REL
Sbjct: 364 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEVATFDIVGPVCESADFLGKDREL 423
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
PTPD GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI+
Sbjct: 424 PTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEEDGSIV 466
>gi|194689552|gb|ACF78860.1| unknown [Zea mays]
Length = 439
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/403 (78%), Positives = 357/403 (88%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+HCF + ADG+LYCE VRV+D M E+ PFYLYSK QI RN AY+ AL+GL SI+GYA
Sbjct: 17 KHCFRRGADGYLYCEGVRVEDAMAAAERSPFYLYSKLQILRNFAAYRDALQGLRSIVGYA 76
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK LEDL LAA+ G
Sbjct: 77 VKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTLEDLKLAAESG 136
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 137 VFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 196
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFL+++K++ NE+KLVG HCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGF+++YLNIGG
Sbjct: 197 WFLNSIKSYSNEIKLVGVHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFKLEYLNIGG 256
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 257 GLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 316
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP AE++ FD+VGPVCESADFLGK+REL
Sbjct: 317 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEVATFDIVGPVCESADFLGKDREL 376
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
PTPD GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI+
Sbjct: 377 PTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEEDGSIV 419
>gi|414882139|tpg|DAA59270.1| TPA: hypothetical protein ZEAMMB73_338404 [Zea mays]
Length = 479
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/416 (76%), Positives = 361/416 (86%), Gaps = 10/416 (2%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+HCF + ADG+LYCE VRV+D M E+ PFYLYSK QI RN AY+ AL+GL SI+GYA
Sbjct: 64 KHCFRRGADGYLYCEGVRVEDAMAAAERSPFYLYSKLQILRNFAAYRDALQGLRSIVGYA 123
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN +L LR+LGCGAVLVSGNELRLAL+AGFDP +CIFNGNGK LEDL LAA+ G
Sbjct: 124 VKANNNLPVLRVLRELGCGAVLVSGNELRLALQAGFDPARCIFNGNGKTLEDLKLAAESG 183
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVNVDSEFDLENIV A+R GKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 184 VFVNVDSEFDLENIVRAARATGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 243
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFL+++K++ NE+KLVG HCHLGSTITKVDIFRDAAVLMVNY+D+IRAQGF+++YLNIGG
Sbjct: 244 WFLNSIKSYSNEIKLVGVHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFKLEYLNIGG 303
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLS++L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 304 GLGIDYHHTDAVLPTPMDLINTVRELVLSQDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 363
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP AE++ FD+VGPVCESADFLGK+REL
Sbjct: 364 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPPTPGAEVATFDIVGPVCESADFLGKDREL 423
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR----------SLISIIILP 469
PTPD GAGLVVHDAGAYCMSMASTYNLK+RPPEYW + L++ I+LP
Sbjct: 424 PTPDEGAGLVVHDAGAYCMSMASTYNLKLRPPEYWEKWKKPLQAREFQLLTWILLP 479
>gi|302809938|ref|XP_002986661.1| hypothetical protein SELMODRAFT_182543 [Selaginella moellendorffii]
gi|300145549|gb|EFJ12224.1| hypothetical protein SELMODRAFT_182543 [Selaginella moellendorffii]
Length = 501
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/455 (70%), Positives = 370/455 (81%), Gaps = 20/455 (4%)
Query: 31 KTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPVE---HCFSKKADGFLYCEDVRVQDVME 87
++ + F + T+++ +S+ + +E F+ K DGFLYCED RVQDVME
Sbjct: 28 RSAVRFSTRRRLTTIRSAVSERVGAESKRSGSLESASRAFTAKGDGFLYCEDRRVQDVME 87
Query: 88 TV-EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLV 146
+V EKRPFYLYSKPQ++RN AY+ AL+G++SI+GYAIKANNN KILEH R LG GAVLV
Sbjct: 88 SVPEKRPFYLYSKPQLSRNFLAYQSALQGISSIVGYAIKANNNVKILEHFRSLGSGAVLV 147
Query: 147 SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGK 206
SGNELRLAL AGFDPT+C+FNGNGKL E+LVLAAQ V VN+DSEFDL +IV A +IA K
Sbjct: 148 SGNELRLALHAGFDPTRCVFNGNGKLPEELVLAAQNDVLVNIDSEFDLAHIVEAGKIANK 207
Query: 207 KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266
V VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD +K HPNE+KLVGAHCHLG
Sbjct: 208 CVRVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDEIKQHPNEVKLVGAHCHLG 267
Query: 267 STITK----------------VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
STITK V+IFRDAA+LMV Y+D+I++QGF++ YLNIGGGLGIDYY
Sbjct: 268 STITKASISFFLFLLRKCVPQVNIFRDAALLMVQYMDEIKSQGFDLKYLNIGGGLGIDYY 327
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
HTGAVLP PR+L+DTVR+LV+SR L LI+EPGRSL+AN LVN VTGVKTNG KNFIVI
Sbjct: 328 HTGAVLPTPRDLVDTVRDLVVSRGLTLIMEPGRSLVANAAALVNRVTGVKTNGNKNFIVI 387
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DGSM+ELIRPSLYDAYQHIELV+PA DAE+ +DVVGPVCESADFLGK RELPTP RG
Sbjct: 388 DGSMSELIRPSLYDAYQHIELVAPAGSDAEVKTYDVVGPVCESADFLGKNRELPTPKRGD 447
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
G+VVHDAGAYCMSMASTYNLKMRPPEYW+ SI
Sbjct: 448 GIVVHDAGAYCMSMASTYNLKMRPPEYWIEDDGSI 482
>gi|168025185|ref|XP_001765115.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683702|gb|EDQ70110.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/397 (74%), Positives = 341/397 (85%), Gaps = 3/397 (0%)
Query: 66 CFSKKADGFLYCEDVRVQDVM--ETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
F + DG++YCE+VRVQ++M E E RPFYLYSK Q+ RN EAY++AL+GLNSIIGYA
Sbjct: 93 AFPVRDDGYMYCEEVRVQEIMDNEVEELRPFYLYSKKQLRRNYEAYQEALQGLNSIIGYA 152
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALR-AGFDPTKCIFNGNGKLLEDLVLAAQE 182
+KANNN KI++HLR+LG GAVLVSG ELRLA+ A FDP +C+FNGNGKLLE+L LAAQ
Sbjct: 153 VKANNNLKIMQHLRELGSGAVLVSGTELRLAVEHADFDPARCVFNGNGKLLEELELAAQY 212
Query: 183 GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
GV +NVDSEFDL I+ ASRI GKKV VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL
Sbjct: 213 GVLINVDSEFDLAQIIEASRITGKKVKVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 272
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
WFL+ VK+HP+ L+LVG HCHLGSTITKVD+FRDAAV+MV++++KIR++ F + YLNIG
Sbjct: 273 WWFLEQVKSHPDNLELVGVHCHLGSTITKVDVFRDAAVVMVDFVNKIRSENFNIQYLNIG 332
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGIDYYH GAVLP P++LIDTVRELV L LIIEPGRSL+ANT V++VTGVKTN
Sbjct: 333 GGLGIDYYHKGAVLPTPKDLIDTVRELVTKEGLTLIIEPGRSLVANTSVFVSNVTGVKTN 392
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
GTKNFIVIDGSM+ELIRPSLYDAYQHIE V+P + AE +DVVGPVCESADFLGKER+
Sbjct: 393 GTKNFIVIDGSMSELIRPSLYDAYQHIEFVAPPAEGAEAKTYDVVGPVCESADFLGKERQ 452
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L TP RG LVVHDAGAYCM+M+STYNL+MR PEYWV
Sbjct: 453 LATPKRGDVLVVHDAGAYCMAMSSTYNLRMRAPEYWV 489
>gi|168064981|ref|XP_001784435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664006|gb|EDQ50742.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 414
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/388 (75%), Positives = 330/388 (85%), Gaps = 3/388 (0%)
Query: 75 LYCEDVRVQDVM--ETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
+YCEDVRVQD+M E E RPFYLYSK Q+ RN EAY++AL+GLNSIIGYA+KANNN KI
Sbjct: 1 MYCEDVRVQDIMDNEVEEVRPFYLYSKRQLRRNYEAYQEALKGLNSIIGYAVKANNNLKI 60
Query: 133 LEHLRKLGCGAVLVSGNELRLALR-AGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
+ LR+LG GAVLVSG ELRLA+ GFDP +C+FNGNGKLLE+L LAAQ GV +NVDSE
Sbjct: 61 MRCLRELGSGAVLVSGTELRLAVEHTGFDPARCVFNGNGKLLEELELAAQYGVLINVDSE 120
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
FDL I+ ASR GK++ VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL WFL+ VK
Sbjct: 121 FDLAQIIEASRNTGKRIKVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLGWFLEEVKK 180
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
H L+LVG HCHLGSTITKVD+FRDAAV+MV+++ KIR + F + YLNIGGGLGIDYYH
Sbjct: 181 HSENLELVGVHCHLGSTITKVDVFRDAAVVMVDFVKKIRGENFTIKYLNIGGGLGIDYYH 240
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
GA+LP P +LIDTVR+LV L LIIEPGRSL+ANT V+HVTGVKTNGTK+FIVID
Sbjct: 241 KGAILPTPTDLIDTVRDLVTKEGLTLIIEPGRSLVANTSAFVSHVTGVKTNGTKDFIVID 300
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
GSM+ELIRPSLY AYQHIE V+P + AE+ FDVVGPVCESADFLGKERELPTP RG G
Sbjct: 301 GSMSELIRPSLYGAYQHIEFVAPPAEGAEVKTFDVVGPVCESADFLGKERELPTPKRGDG 360
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+VVHDAGAYCM+MASTYNL+MRPPEYWV
Sbjct: 361 IVVHDAGAYCMAMASTYNLRMRPPEYWV 388
>gi|307104892|gb|EFN53143.1| hypothetical protein CHLNCDRAFT_58576 [Chlorella variabilis]
Length = 889
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 267/388 (68%), Positives = 313/388 (80%), Gaps = 3/388 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DGFLYC+ ++V D+ PFYLYSK +I +N AYK+ALEGL+SI+GYA+KANNN+K
Sbjct: 84 DGFLYCDGLKVDDIRAQAAASPFYLYSKEKIRQNYNAYKEALEGLDSIVGYAVKANNNFK 143
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
I++ LR+LG GAVLVSGNELRLA+ AGFDPT+ IFNGNGKL +L LA + GV +NVDSE
Sbjct: 144 IMQCLRELGSGAVLVSGNELRLAMMAGFDPTRTIFNGNGKLPRELELAVENGVLINVDSE 203
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
FDL NI A+ GK+ VL+RINPDVDPQVHPYV+TG SKFGIRN LQWFLD +KA
Sbjct: 204 FDLANIQAAAAKVGKRARVLIRINPDVDPQVHPYVSTGLAGSKFGIRNTHLQWFLDQIKA 263
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
N L+LVGAHCHLGSTITKV+IFRDA +LMV +I +IR QGF++ +LNIGGGLGIDY
Sbjct: 264 DAN-LELVGAHCHLGSTITKVNIFRDATILMVEFIKQIREQGFDLKFLNIGGGLGIDYAR 322
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G VLP P++LIDTVR+LV S L L+IEPGRS++AN+ VN VTGVKTNG KNFIV+D
Sbjct: 323 KGDVLPTPKDLIDTVRDLVSSLGLVLVIEPGRSMVANSSAFVNTVTGVKTNGNKNFIVVD 382
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
GSMAELIRPSLYDAYQHIEL AP +E+ FDVVGPVCESADFLGK+R L TP G G
Sbjct: 383 GSMAELIRPSLYDAYQHIELT--APHASEVQTFDVVGPVCESADFLGKDRVLHTPVAGDG 440
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV DAGAYCMSMAS YN+K+ P E+WV
Sbjct: 441 LVVMDAGAYCMSMASNYNMKLAPEEWWV 468
>gi|225428410|ref|XP_002283716.1| PREDICTED: diaminopimelate decarboxylase 2, chloroplastic isoform 2
[Vitis vinifera]
Length = 423
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/340 (79%), Positives = 289/340 (85%), Gaps = 19/340 (5%)
Query: 1 MAATQLCSNSASLSKAL-------TQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNP 53
MAAT L + + SK+L + +PFP + + P TL TLKAVLSQNP
Sbjct: 1 MAATNLLPQAPTFSKSLKYPLNPKSFSPFPNLLLRPSPKTL---------TLKAVLSQNP 51
Query: 54 AKSQTHTAPVE---HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYK 110
AK+ T A + HCF K DGFLYCE +RVQDVM+ VEKRPFYLYSKPQITRN EAYK
Sbjct: 52 AKTLTPDAQAQKFQHCFRKSEDGFLYCEGLRVQDVMDQVEKRPFYLYSKPQITRNFEAYK 111
Query: 111 QALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170
+ALEGL SIIGYAIKANNN KILEHLR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNG
Sbjct: 112 EALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNG 171
Query: 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230
KLLEDLVLAAQEGVFVNVDSEFDL+NI+ A+RIAGKKVNVLLRINPDVDPQVHPYVATGN
Sbjct: 172 KLLEDLVLAAQEGVFVNVDSEFDLDNIISAARIAGKKVNVLLRINPDVDPQVHPYVATGN 231
Query: 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 290
KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYID+IR
Sbjct: 232 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDEIR 291
Query: 291 AQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
AQGFE+ YLNIGGGLGIDYYH GAVLP PR+LIDT ELV
Sbjct: 292 AQGFEISYLNIGGGLGIDYYHAGAVLPTPRDLIDTHIELV 331
>gi|384247914|gb|EIE21399.1| diaminopimelate decarboxylase [Coccomyxa subellipsoidea C-169]
Length = 432
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 256/393 (65%), Positives = 297/393 (75%), Gaps = 3/393 (0%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F DG+LY +++R+ D+ V+ PFYLYSK +IT N +AY ALEGL+ +GYA+KA
Sbjct: 19 FYTGEDGYLYVDNLRIDDIRAEVKDSPFYLYSKNKITANYQAYAAALEGLDHFVGYAVKA 78
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
NNN I+ HL+ LG GAVLVSGNEL+ A AGFD T+ IFNGNGKL E+L LA Q+G +
Sbjct: 79 NNNLPIMRHLQSLGSGAVLVSGNELQAAEAAGFDTTRTIFNGNGKLPEELRLAIQKGALI 138
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NVDSEFDLENI A+R K VL+RINPDVDPQVH YV+TG NSKFGIRN LQWFL
Sbjct: 139 NVDSEFDLENIAAAARAVDKTARVLIRINPDVDPQVHAYVSTGLANSKFGIRNSHLQWFL 198
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
+ P L+L G H HLGSTITKVDIFRDAA +M+ +I +IRA+GF+ YLNIGGGLG
Sbjct: 199 KRISEEP-LLELAGVHSHLGSTITKVDIFRDAAQIMIGFIQQIRAEGFQPKYLNIGGGLG 257
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
IDY+ G P P +L+DTVR+LV L +I+EPGRS+I N LVN VTG KTNG KN
Sbjct: 258 IDYHRRGDAFPSPADLVDTVRDLVADLGLTMILEPGRSMIGNASALVNTVTGTKTNGNKN 317
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
FIV+DGSM+ LIRPSLYDAYQHIEL AP D FD+VGPVCESADFLGKER L TP
Sbjct: 318 FIVVDGSMSALIRPSLYDAYQHIELT--APGDGTEQVFDIVGPVCESADFLGKERPLRTP 375
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G GLVVHDAGAYCM+MASTYNLKMRP EYWV
Sbjct: 376 RAGDGLVVHDAGAYCMAMASTYNLKMRPAEYWV 408
>gi|159464022|ref|XP_001690241.1| diaminopimelate decarboxylase [Chlamydomonas reinhardtii]
gi|158284229|gb|EDP09979.1| diaminopimelate decarboxylase [Chlamydomonas reinhardtii]
Length = 473
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 250/395 (63%), Positives = 305/395 (77%), Gaps = 3/395 (0%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
++ DG+LYC+ +RV+D+ V + PFYLYS +I N YK+AL GL+++ YA+KA
Sbjct: 60 YTGAEDGYLYCDQMRVEDIRNKVPESPFYLYSWNRIAHNYAEYKKALAGLDNLPCYAVKA 119
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
NNN I++ L G GAVLVSGNEL+LA++AGFDP + I NGNGKL +L LAA+ GV +
Sbjct: 120 NNNLVIMKQLAAAGAGAVLVSGNELKLAMKAGFDPKRTILNGNGKLPWELELAAEMGVNI 179
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
N+DSEFDLENI A+R GKKV+VLLRINPDVDPQVH YV+TG +SKFGIRN ++WFL
Sbjct: 180 NIDSEFDLENIAAAARKTGKKVSVLLRINPDVDPQVHSYVSTGLASSKFGIRNSHIKWFL 239
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
D ++ P L+LVG H HLGSTITKV+IFRDAAV+M +++ IRA+GF++ YLNIGGGLG
Sbjct: 240 DEIRKEP-LLELVGVHSHLGSTITKVNIFRDAAVIMCDFVKMIRAEGFQLKYLNIGGGLG 298
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
IDY H G VLP P +LIDTVR++V L L+IEPGRS++A LVN VTGVKTNG KN
Sbjct: 299 IDYSHQGQVLPTPTDLIDTVRDIVKELGLTLVIEPGRSMVATGSALVNTVTGVKTNGNKN 358
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
FIVIDGSMA LIRPSLY AYQHIEL P + FDVVGP+CES D+LGK+REL TP
Sbjct: 359 FIVIDGSMATLIRPSLYGAYQHIELTK--PHSTPVQTFDVVGPICESGDYLGKDRELATP 416
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+G G+VVHDAGAYCMSMAS YNLKM+P EY V +
Sbjct: 417 SKGDGIVVHDAGAYCMSMASNYNLKMKPAEYMVEN 451
>gi|302853272|ref|XP_002958152.1| DAP decarboxylase [Volvox carteri f. nagariensis]
gi|300256513|gb|EFJ40777.1| DAP decarboxylase [Volvox carteri f. nagariensis]
Length = 462
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/393 (62%), Positives = 302/393 (76%), Gaps = 12/393 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
++ DG++Y + +RV+D+ V + PFYLYSK +I N +AYK+ALEGL+S+ YA+KA
Sbjct: 57 YTGAEDGYMYVDQLRVEDIRRQVPESPFYLYSKNRIMHNYQAYKKALEGLSSLPCYAVKA 116
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
NNN I++ L G GAVLVSGNEL++A+ AGFDP++ IFNGNGKL +L LAA++GV +
Sbjct: 117 NNNLIIMKELAAAGAGAVLVSGNELKMAMAAGFDPSRTIFNGNGKLPWELELAAEKGVLI 176
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
N+DSEFDL+NI A+R GKKV VLLRINPDVDPQVHPYV+TG SKFGIRN + WFL
Sbjct: 177 NIDSEFDLQNIAAAARKTGKKVKVLLRINPDVDPQVHPYVSTGLAGSKFGIRNSHIGWFL 236
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
+A++A P L+LVG H HLGSTITKV+IFRDAAV+M ++ IR++GF + YLNIGGGLG
Sbjct: 237 EAIRAEP-LLELVGVHSHLGSTITKVNIFRDAAVIMCEFVKMIRSEGFNLQYLNIGGGLG 295
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
IDY H G VLP P +LIDTVR++V L L+IEPGRS+ VKTNG K+
Sbjct: 296 IDYSHQGQVLPTPTDLIDTVRDIVKELGLTLVIEPGRSMGRRR---------VKTNGNKH 346
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
FIVIDGSMA LIRPSLY AYQHIEL P+ +A + FDVVGP+CES D+LGK+R+LPTP
Sbjct: 347 FIVIDGSMATLIRPSLYGAYQHIELTKPS--NAPMETFDVVGPICESGDYLGKDRQLPTP 404
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G GLVVHDAGAYCMSMAS YNLKMRP EY V
Sbjct: 405 QPGDGLVVHDAGAYCMSMASNYNLKMRPAEYLV 437
>gi|449016690|dbj|BAM80092.1| diaminopimelate decarboxylase [Cyanidioschyzon merolae strain 10D]
Length = 506
Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust.
Identities = 239/449 (53%), Positives = 309/449 (68%), Gaps = 13/449 (2%)
Query: 16 ALTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKSQTHTAPVEHCFSKKADGFL 75
A + PF + + L + L+ + A QNPA F +DGFL
Sbjct: 32 AWCRRPFHGVESQASSSGLQASQLLRMQVVAAPAVQNPAPQ----------FEVGSDGFL 81
Query: 76 YCEDVRVQDVMETV--EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKIL 133
YCE+VRV+D+ + + E PFYLYS+ +I NV AY++AL G+++IIGYA+KANNN I+
Sbjct: 82 YCEEVRVKDIQDALGPEASPFYLYSQSRIEANVRAYQEALAGMDAIIGYAVKANNNLMIM 141
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFD 193
+ +R+ GCGAVLVSGNELRLA AGFD + +FNGNGK +++ LA + +NVDSEFD
Sbjct: 142 QLVRERGCGAVLVSGNELRLARLAGFDMRRTVFNGNGKTPQEIALAVRAECLINVDSEFD 201
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LENI+ A++ G+K VLLRINPD+DPQVHPYV+TG SKFGIR ++L+WFLD ++ +
Sbjct: 202 LENILAAAKREGRKARVLLRINPDIDPQVHPYVSTGLATSKFGIRTDQLRWFLDRIRQNE 261
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF-EVDYLNIGGGLGIDYYHT 312
+++LVG H HLGSTI KV++F D V M+ ID+I A+GF + +LNIGGGLGIDY
Sbjct: 262 AQVELVGVHSHLGSTIKKVELFHDNVVTMLQVIDEISARGFHSIRFLNIGGGLGIDYERK 321
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
G +P P+ LID +R + R+L LIIEPGRSLI N LV V GVK NG K FIV+DG
Sbjct: 322 GERIPTPQELIDAIRPCLAGRDLTLIIEPGRSLIGNAGILVCRVIGVKRNGDKRFIVVDG 381
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
SMAELIRP+LY AYQ I L P +++ +D+VGPVCES+DFLGK R LP P G GL
Sbjct: 382 SMAELIRPALYGAYQLITLTEPGVAGEQMATYDIVGPVCESSDFLGKARVLPLPAPGTGL 441
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
V D+GAYCMSMAS YN+K+ P E V+
Sbjct: 442 AVMDSGAYCMSMASNYNMKVLPGELMVQG 470
>gi|452825179|gb|EME32177.1| diaminopimelate decarboxylase [Galdieria sulphuraria]
Length = 487
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/416 (53%), Positives = 300/416 (72%), Gaps = 7/416 (1%)
Query: 45 LKAVLSQNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITR 104
LKA ++ +++ TH + + + GFL+CE+++V D++E V PF+LYSK Q+
Sbjct: 55 LKASMAVQLSEAGTHKSYIGY----DKHGFLWCEELKVADILENVGTSPFFLYSKSQLVS 110
Query: 105 NVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKC 164
N E+Y A +G+++IIGYAIKANNN +L L G GAVLVSG EL LA +AGFD K
Sbjct: 111 NFESYLNATKGMDAIIGYAIKANNNLSLLRILASRGSGAVLVSGGELMLAEKAGFDLHKT 170
Query: 165 IFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHP 224
+ NGNGK + ++ +A + +NVDSEFDLE+I+++S+ GK+ +L+RINPD+DPQVHP
Sbjct: 171 VLNGNGKTISEISVAVTKECLINVDSEFDLEHIILSSKQVGKRARILIRINPDIDPQVHP 230
Query: 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVN 284
Y++TG NSKFGIRN L+WFL+ +K + L LVG HCHLGSTI +V IF+DAA +M++
Sbjct: 231 YISTGLANSKFGIRNTHLEWFLNRIKQEQSYLDLVGVHCHLGSTIRQVKIFKDAATIMLD 290
Query: 285 YIDKIRAQGFE-VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGR 343
++ IR GF + YLNIGGGLGIDY G +P P L+ ++RE V L LIIEPGR
Sbjct: 291 FVSIIRNAGFHGLQYLNIGGGLGIDYERQGHSIPTPEELVGSIREKVKEAQLTLIIEPGR 350
Query: 344 SLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK 403
S++ NT L++ V GVK+NG K FIV+DGSMAE+IRPSLYDA+ I L++ P E+SK
Sbjct: 351 SIVGNTGMLISRVIGVKSNGNKEFIVVDGSMAEVIRPSLYDAFHWIGLIT--PNSNELSK 408
Query: 404 FDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
FDVVGP+CESADFLGK+R LP P+ G+G+ + D GAYC +MAS YN++++P E V
Sbjct: 409 FDVVGPICESADFLGKDRMLPRPEEGSGIAIMDTGAYCYAMASNYNMRLKPAEILV 464
>gi|260797946|ref|XP_002593961.1| hypothetical protein BRAFLDRAFT_118823 [Branchiostoma floridae]
gi|229279194|gb|EEN49972.1| hypothetical protein BRAFLDRAFT_118823 [Branchiostoma floridae]
Length = 447
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/412 (50%), Positives = 284/412 (68%), Gaps = 12/412 (2%)
Query: 60 TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKR-------PFYLYSKPQITRNVEAYKQA 112
+AP+++CF + GFL+CE VRV+ + E + +R PFYLYS Q+ NV YK+A
Sbjct: 3 SAPLKNCFHRDGAGFLWCEGVRVKSLQEDLSRRLPRPSCSPFYLYSLSQVRHNVSRYKEA 62
Query: 113 LEGLNS--IIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170
L+ L + ++GY++KAN N +IL+ LR +GCGAV VSGNE+RLAL AGF P ++NGNG
Sbjct: 63 LKTLPNPHVLGYSLKANGNLEILKTLRAMGCGAVTVSGNEIRLALTAGFSPDSIVYNGNG 122
Query: 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230
K +L LA + +NVDS+FDL ++ A+ ++ VL+RINPD+DP+VHPY +TG
Sbjct: 123 KQDWELELAVRVNCLINVDSDFDLRHVRSAADTVRQRARVLIRINPDIDPRVHPYNSTGL 182
Query: 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR 290
+SKFG+ +L L+ V+ P +L+LVG HCHLGSTIT V +FRD ++ ++ +R
Sbjct: 183 ASSKFGLECSQLPGLLEKVRRWPAQLQLVGLHCHLGSTITDVSLFRDVVSVVSAEMESVR 242
Query: 291 AQGF-EVDYLNIGGGLGIDYY-HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIAN 348
+QGF ++ YLN+GGGLGIDY + P P +L+ ++R+ + +N+ LI+EPGRS+I +
Sbjct: 243 SQGFHDLRYLNMGGGLGIDYLRQQDSTNPSPADLVSSIRDALTDKNICLILEPGRSIIGD 302
Query: 349 TCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA-PQDAEISKFDVV 407
LV V GVK NG K F+V DGSM E+IRPSLY AY HI+L P+ +D ++DVV
Sbjct: 303 AAILVTKVIGVKGNGKKRFVVTDGSMTEVIRPSLYSAYHHIQLTEPSQAEDPTEQEYDVV 362
Query: 408 GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
GPVCE DFLGK+R +PTP G GLVV D GAYC SMAS YN+++RP E V
Sbjct: 363 GPVCECGDFLGKDRTIPTPHEGCGLVVFDVGAYCSSMASNYNMRIRPAEVLV 414
>gi|218190654|gb|EEC73081.1| hypothetical protein OsI_07046 [Oryza sativa Indica Group]
Length = 297
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 160/208 (76%), Positives = 183/208 (87%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+ CF + ADG LYCE VRV+D M E+ PFYLYSKPQ+ RN AY+ ALEGL SI+GYA
Sbjct: 69 KRCFRRGADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYA 128
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN ++L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ G
Sbjct: 129 VKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESG 188
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 189 VFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 248
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITK 271
WFLD++K++ N++ LVG HCHLGSTITK
Sbjct: 249 WFLDSIKSYSNDITLVGVHCHLGSTITK 276
>gi|218190653|gb|EEC73080.1| hypothetical protein OsI_07045 [Oryza sativa Indica Group]
gi|222622767|gb|EEE56899.1| hypothetical protein OsJ_06555 [Oryza sativa Japonica Group]
Length = 229
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 164/196 (83%), Positives = 182/196 (92%), Gaps = 1/196 (0%)
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
T+VDIFRDAA LMVNY+D+IRAQGFE++YLNIGGGLGIDY+HT AVLP P +LI+TVREL
Sbjct: 14 TQVDIFRDAAGLMVNYVDEIRAQGFELEYLNIGGGLGIDYHHTDAVLPTPMDLINTVREL 73
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
VLSR+L LIIEPGRSLIANTCC VN VTGVK+NGTKNFIV+DGSMAELIRPSLY AYQHI
Sbjct: 74 VLSRDLTLIIEPGRSLIANTCCFVNRVTGVKSNGTKNFIVVDGSMAELIRPSLYGAYQHI 133
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
ELVSP+P DAE++ FD+VGPVCESADFLGK+RELPTPD+GAGLVVHDAGAYCMSMASTYN
Sbjct: 134 ELVSPSP-DAEVATFDIVGPVCESADFLGKDRELPTPDKGAGLVVHDAGAYCMSMASTYN 192
Query: 450 LKMRPPEYWVRSLISI 465
LK+RPPEYWV SI
Sbjct: 193 LKLRPPEYWVEDDGSI 208
>gi|125581938|gb|EAZ22869.1| hypothetical protein OsJ_06556 [Oryza sativa Japonica Group]
Length = 200
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 156/199 (78%), Positives = 177/199 (88%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G LYCE VRV+D M E+ PFYLYSKPQ+ RN AY+ ALEGL SI+GYA+KANNN ++
Sbjct: 2 GHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYAVKANNNLRV 61
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEF 192
L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ GVFVN+DSEF
Sbjct: 62 LQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESGVFVNIDSEF 121
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
DLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQWFLD++K++
Sbjct: 122 DLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQWFLDSIKSY 181
Query: 253 PNELKLVGAHCHLGSTITK 271
N++ LVG HCHLGSTITK
Sbjct: 182 SNDITLVGVHCHLGSTITK 200
>gi|443700610|gb|ELT99490.1| hypothetical protein CAPTEDRAFT_172537 [Capitella teleta]
Length = 472
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 190/431 (44%), Positives = 259/431 (60%), Gaps = 37/431 (8%)
Query: 66 CFSKKADGFLYCEDVRVQDVM--------ETVEKRPFYLYSKPQITRNVEAYKQALE--G 115
CFS K +G LYC+DV + + E + PF+L S QI RNV AY +A + G
Sbjct: 10 CFSHK-NGHLYCDDVTISAIQDGLPSLLEEGLHASPFFLLSVSQIERNVGAYTEAFQQHG 68
Query: 116 LNSIIGYAIKANNNYKILEHLRKLGCG-AVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
+ +GYAIKAN + +L LR G AV VSG E+RLA+ AGF P+ I NGNGK
Sbjct: 69 TSHRLGYAIKANYSPSLLRRLRTEGVECAVAVSGYEVRLAIDAGFSPSDVILNGNGKQPW 128
Query: 175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
++ A + G +N+DS FDL ++++AS+ G K NVLLR+NP++DP+VHPY+ATG K
Sbjct: 129 EIDSAVKAGCTLNIDSGFDLHHVLLASQKHGLKANVLLRLNPNIDPKVHPYIATGLSCCK 188
Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
FGI ++L L ++ ++L+G HCHLGSTI + R+ M+ ++ GF
Sbjct: 189 FGIEEDQLPAVLRKLQESTEHVQLIGLHCHLGSTIRDTGVMRECIQYMLKKSQELNGMGF 248
Query: 295 E-VDYLNIGGGLGIDYYHTG--------------AVLPKPRNLIDTVRELVLSRN-LNLI 338
+ + Y+N+GGGLGID A P +L++ + L + L LI
Sbjct: 249 QALRYINLGGGLGIDQERHACRTRGPEIQAESDVAAFPTAAHLVNALMTPELKESGLQLI 308
Query: 339 IEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQD 398
+EPGRSL+A+ L+ V GVK NG + FIV+DG+M E+IRP+LY AY HIEL + P+
Sbjct: 309 LEPGRSLVADAGLLIAKVIGVKANGGQRFIVVDGAMTEVIRPALYQAYHHIEL-TEEPRC 367
Query: 399 AEIS--------KFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
AE+ + VVGPVCESADFLGK+R L TP G G+VV D GAYC SMAS YN+
Sbjct: 368 AEVQLGGAAERHPYHVVGPVCESADFLGKDRWLKTPHEGCGVVVFDVGAYCGSMASNYNM 427
Query: 451 KMRPPEYWVRS 461
+ RP E V+
Sbjct: 428 RGRPAEVAVKG 438
>gi|291232632|ref|XP_002736260.1| PREDICTED: Ornithine DeCarboxylase family member (odc-1)-like
[Saccoglossus kowalevskii]
Length = 614
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 226/337 (67%), Gaps = 6/337 (1%)
Query: 121 GYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA 180
GYA+KANNN IL LR LGC AVLVSGNEL+LA+ AGF K +FNGNGK ++ LA
Sbjct: 278 GYAVKANNNLTILRILRDLGCTAVLVSGNELKLAMLAGFSTDKLVFNGNGKTQWEIELAV 337
Query: 181 QEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
V +N DS FD+++I +R GKKV +LLR+NPD+DP+VH Y+ATG+ SKFGI
Sbjct: 338 THDVMINADSLFDIDHISSVARQLGKKVKMLLRMNPDIDPEVHRYLATGSAVSKFGIPET 397
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L L + N + LVG HCH+GSTIT +D+FR M+ Y + ++ +GF + YLN
Sbjct: 398 DLDTALGKAGSDDN-IDLVGLHCHIGSTITNIDVFRATVSAMLRYNNHVQGRGFRLKYLN 456
Query: 301 IGGGLGIDYYH----TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
+GGGLGI+Y +P LID++ + + L LI+EPGRS+IA+ LV+ V
Sbjct: 457 VGGGLGINYRKYIQGGSPGIPSGGELIDSIADKIKESGLCLILEPGRSIIASAGILVSKV 516
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
G+K N T++F+VIDGSM E++RP LY AY HI+L+ P + + ++ VVGPVCE D+
Sbjct: 517 IGIKRNETRSFLVIDGSMTEVMRPCLYGAYHHIQLIEPV-KTSGTRRYSVVGPVCECGDY 575
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMR 453
L ++ ELP P G GL + DAGAYC SM+S YN+++R
Sbjct: 576 LAEDIELPIPHEGCGLAIRDAGAYCASMSSNYNMRVR 612
>gi|321471945|gb|EFX82917.1| hypothetical protein DAPPUDRAFT_316211 [Daphnia pulex]
Length = 489
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 177/440 (40%), Positives = 251/440 (57%), Gaps = 39/440 (8%)
Query: 51 QNPAKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKR-------------PFYLY 97
Q + A + F D F YCE+ V + +EK P Y+Y
Sbjct: 34 QQKNMANAQQAKLSTAFYYLNDNF-YCENSPVHQIENELEKTSGCDDDDDDRSATPLYIY 92
Query: 98 SKPQITRNVEAYKQALE--GLNSI--IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRL 153
S+ Q+ RN+++YK A++ G++ I YA+KAN N ++E +RK CGAV VSG EL+
Sbjct: 93 SQAQLHRNIQSYKDAIQSAGMSGRMHIFYAVKANPNLHLMELVRKQNCGAVTVSGYELKA 152
Query: 154 ALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLR 213
AL GF P + NGNGK + ++ LA + G +NVDS FD ENI+ +R K VL+R
Sbjct: 153 ALNTGFVPEMILLNGNGKQMWEIRLALKNGCMLNVDSYFDAENIISVARQLQKTARVLIR 212
Query: 214 INPDVDPQ---VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
+NP ++ VH Y++T KNSKFGI + L+ ++A + +++VG HCH+GSTI
Sbjct: 213 VNPGLEQSSTPVHSYLSTALKNSKFGIPLHQFDQVLELLRAE-HFIQVVGLHCHVGSTIR 271
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGF-EVDYLNIGGGLGIDYYH----TGAVLPKPRNLIDT 325
I+ D ++++ K+ QG+ + YL+IGGGLGIDYYH + L LI
Sbjct: 272 DAFIYSDVTRILLDIRQKLITQGYAHLKYLDIGGGLGIDYYHGTNQEQSPLSSTGELIQA 331
Query: 326 VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT--NGTKNFIVIDGSMAELIRPSLY 383
+ L L ++ +IIEPGRSL+ANT LV V G K +G KNF+V+D +M +LIRPS Y
Sbjct: 332 IASL-LPPDVEVIIEPGRSLVANTGILVTKVLGSKKSPDGGKNFVVVDAAMNDLIRPSFY 390
Query: 384 DAYQHIELVSPAPQDAEISK---FDVVGPVCESADFLGKERELPT-PDRGAGLVVHDAGA 439
AY H+ P IS +D+VGP+CES DFL +R L P +G + + D GA
Sbjct: 391 QAYHHV-----LPVRKSISSEGTYDIVGPICESGDFLAVDRRLAQEPVKGDLMAIMDIGA 445
Query: 440 YCMSMASTYNLKMRPPEYWV 459
Y M+MAS YN++ R E V
Sbjct: 446 YGMAMASNYNMRARAAEVLV 465
>gi|225848225|ref|YP_002728388.1| diaminopimelate decarboxylase [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225643357|gb|ACN98407.1| diaminopimelate decarboxylase [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 420
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 235/390 (60%), Gaps = 9/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LYCEDV +Q++ + PFY+YSK I + YK+A + ++I YA+KAN+N
Sbjct: 13 DGKLYCEDVNIQNLASKI-GTPFYIYSKKAIIDKINEYKEAFKDYPTLICYALKANSNLS 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ + G GA +VSG EL A + G K ++ G GK +++ A E + NV+S
Sbjct: 72 ILKIFEEHGLGADIVSGGELYKARKVGIPSNKIVYAGVGKTDVEIIYAINENILSFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+ +LE I ++ KK N+ +RINPDVDP+ HPY++TG K SKFGI + L + AV
Sbjct: 132 QMELEVINEIAKRQNKKANISIRINPDVDPKTHPYISTGLKKSKFGIDIGQALDVYKQAV 191
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
K L +VG HCH+GS I V ++++A V+ + K++ +G E+ +++IGGGLG+ Y
Sbjct: 192 KME--NLNVVGIHCHIGSQIMDVSVYKEAVEKTVDLVFKLKKEGIELQFIDIGGGLGVKY 249
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
Y P +L +TV +V L LIIEPGRSLIA L+ V K K+F++
Sbjct: 250 YPEDNP-PTAFDLANTVLPIVKQTGLKLIIEPGRSLIAQAGALITKVIFTKDKKDKHFVI 308
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M +LIRPS+Y+AY HI + Q+ ++ D+VGP+CE+ DF G +RE+ +RG
Sbjct: 309 VDSGMNDLIRPSIYNAYHHI-ITVEEKQEKMVA--DIVGPICETGDFFGLDREIGKVNRG 365
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY SMAS YN++ + E V
Sbjct: 366 DLLAILTAGAYGSSMASNYNVRPKAIEILV 395
>gi|206889561|ref|YP_002248957.1| diaminopimelate decarboxylase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206741499|gb|ACI20556.1| diaminopimelate decarboxylase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 418
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 237/397 (59%), Gaps = 8/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS K G LY EDV V++++ P Y+YS + R++ AY++A + II YA+
Sbjct: 2 HFFSHK-KGELYAEDVPVKELINKF-GTPLYIYSYGTLIRHIRAYEEAFCEVPHIICYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL +LG GA +VSG EL AL+AG P K +F G GK E++ A + +
Sbjct: 60 KANSNLAILRIFAELGIGADIVSGGELFKALKAGIKPYKIVFAGVGKTDEEIEYALKNNI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +L I ++ K +V LR+NPD+DP+ H Y+ATG K+SKFGI EK
Sbjct: 120 LMFNVESEAELHKINEKAKNLKKVASVALRVNPDIDPKTHKYIATGLKSSKFGIPIEKAL 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ K+ N +K++G H H+GS IT+ + +A +++ D++ E++Y++IGG
Sbjct: 180 DYYKLAKSMKN-IKVIGIHKHIGSQITETSAYVEALNKILSLYDQLANYDMEIEYIDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P+ L D + LV ++ LIIEPGRS++ N LV V K
Sbjct: 239 GLGITYRDEEP--PHPKELADVLIPLVKNKKGKLIIEPGRSIVGNAGILVTKVLYTKETE 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNFI++D M +LIRP+LY +Y I+ V+P ++ ++ D+VGP+CES DFL K+RE+
Sbjct: 297 QKNFIIVDAGMNDLIRPTLYGSYHEIQPVTPGKKEKIVA--DIVGPICESGDFLAKDREI 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G L V AGAY SM+S YN + R E V+
Sbjct: 355 EKVSAGEYLAVMSAGAYGFSMSSNYNSRPRVAEVLVK 391
>gi|420243197|ref|ZP_14747151.1| diaminopimelate decarboxylase [Rhizobium sp. CF080]
gi|398063284|gb|EJL55030.1| diaminopimelate decarboxylase [Rhizobium sp. CF080]
Length = 422
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 157/394 (39%), Positives = 234/394 (59%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + ++ + V PFY+YS + R+ + + +A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPIPEIAKAV-GTPFYVYSTATLERHYKVFAKAFSDVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VSG ELR AL AG + +F+G GK ++++ LA G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSGGELRRALAAGIPANRIMFSGVGKTVQEMDLALSAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGKK +V RINPDVD H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRALKAGKKAHVSFRINPDVDAGTHAKISTGKKENKFGIAYERAR----AVY 182
Query: 251 AHPNELK---LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L + G H+GS IT++ F DA L+ +D +R+ G +D+++IGGGLGI
Sbjct: 183 AHAATLDGIGVTGIDMHIGSQITELQPFEDAFRLLRELVDTLRSDGHRIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P +TV+ + S ++ EPGR ++ N LV V VK G K+F
Sbjct: 243 PYREDNNPPPLPDAYAETVKRQLRSLECKIVTEPGRLIVGNAGILVTEVIYVKDGGEKSF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LYDAY I V P DA K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYDAYHMIRPVVVPPADAPRIKGDVVGPVCETGDYLALDREMAEPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLIAVASAGAYGAVQAGTYNTRLLVPEVLVKG 396
>gi|188996497|ref|YP_001930748.1| diaminopimelate decarboxylase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931564|gb|ACD66194.1| diaminopimelate decarboxylase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 419
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 240/391 (61%), Gaps = 17/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCE+V + ++ V PF++YSK I + YK+A + +++I YA+KAN+N +L+
Sbjct: 15 LYCEEVSILNLASKV-GTPFFVYSKKAILDKINQYKEAFKDYDTLICYALKANSNLSLLK 73
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ G GA +VSG EL A +AGF K ++ G GK ++ A E + NV+S +
Sbjct: 74 IFEENGVGADIVSGGELYKAKKAGFSSNKIVYAGVGKTDFEISYAISENILSFNVESFME 133
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L+ V + IAGK K NV +R+NP+VDP+ HPY++TG K SKFGI + LDA K
Sbjct: 134 LD---VINEIAGKQEKKANVSIRVNPNVDPKTHPYISTGLKKSKFGI---DIDQALDAYK 187
Query: 251 --AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A L +VG HCH+GS I + +FR+AA +V+ + K++ +G E+ ++++GGGLG+
Sbjct: 188 KAAKLENLNVVGVHCHIGSQIMDISVFREAAEKVVDLVFKLKKEGIELKFIDMGGGLGVK 247
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y H P P++L D + +V L LIIEPGRSLIA L+ V +K K+F+
Sbjct: 248 Y-HPDDNPPTPKDLADAIIPVVKQTGLKLIIEPGRSLIAEAGALITKVIFLKDKQEKHFV 306
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D M +L+RP++Y+AY H+ ++ +D E+ D+VGP+CE+ DFL +R++ +R
Sbjct: 307 IVDSGMNDLVRPAMYNAYHHV--LNVQEKDEEMIA-DIVGPICETGDFLALDRKIGKVER 363
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY SM+S YN++ R E V
Sbjct: 364 GDLLAIMTAGAYGSSMSSNYNVRPRALEVLV 394
>gi|262198680|ref|YP_003269889.1| diaminopimelate decarboxylase [Haliangium ochraceum DSM 14365]
gi|262082027|gb|ACY17996.1| diaminopimelate decarboxylase [Haliangium ochraceum DSM 14365]
Length = 425
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 228/398 (57%), Gaps = 13/398 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LYCEDV + + + V P Y+YS +TR+++ + AL G+ ++ +++K+N N
Sbjct: 8 DDELYCEDVPLARIADEVGT-PVYVYSHATLTRHLQVFDAALSGVPHLVCFSVKSNPNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L L +LG GA +VSG EL LRAG DP K +F+G GK ++ A + G+ NV+S
Sbjct: 67 VLRLLFQLGAGADIVSGGELARVLRAGGDPAKVVFSGVGKTDAEIAAALRAGILAFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ--WFLDA 248
E +L I + G + V LRINPDVD Q HPY+ATG K SKFGI + + + L
Sbjct: 127 EEELHAIDAVAADMGARAPVSLRINPDVDAQTHPYIATGLKESKFGIAMAEARRVYALAR 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
AH + +VG CH+GS +T+ D F DA ++ I+++ A G + YL+IGGGLGI
Sbjct: 187 TLAH---VDIVGVDCHIGSQLTRTDPFSDAVSRLLGLIEELHADGVALRYLDIGGGLGIP 243
Query: 309 YYHTGAV-LPKPRNLIDTVRE----LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
Y GA P P D ++ L L L +I EPGR + N L+ V K
Sbjct: 244 YEGDGAAPPPSPAEYGDAIKSALAPLKLPTPLTIICEPGRVITGNAGALLTRVLYRKHAE 303
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F V+D +M +LIRPSLY +Y + V A Q + DVVGP+CES DFL ++REL
Sbjct: 304 AKHFTVVDAAMNDLIRPSLYGSYHPMRPVVRAAQRPQ-QVTDVVGPICESGDFLARDREL 362
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
P +RG L + AGAY +MAS YN + R E VR
Sbjct: 363 PALERGELLAIGAAGAYGFAMASNYNSRPRAAEVMVRG 400
>gi|237756659|ref|ZP_04585168.1| diaminopimelate decarboxylase [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691179|gb|EEP60278.1| diaminopimelate decarboxylase [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 419
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 151/379 (39%), Positives = 235/379 (62%), Gaps = 9/379 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCE+V + ++ V PF++YSK I + YK+A + +++I YA+KAN+N +L+
Sbjct: 15 LYCEEVSILNLASKV-GTPFFVYSKKAILDKINQYKEAFKDYDTLICYALKANSNLSLLK 73
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ G GA +VSG EL A +AGF K ++ G GK ++ A E + NV+S +
Sbjct: 74 IFEENGLGADIVSGGELYKAKKAGFSSNKIVYAGVGKTDFEISYAISENILSFNVESFME 133
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L+ I + KK NV +R+NP+VDP+ HPY++TG K SKFGI ++ L + AVK
Sbjct: 134 LDVINEIASKQEKKANVSIRVNPNVDPKTHPYISTGLKKSKFGIDIDQALDAYKKAVKLE 193
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
L +VG HCH+GS I V +FR+AA +V+ + K++ +G E+ ++++GGGLG+ Y H
Sbjct: 194 --NLNVVGVHCHIGSQIMDVSVFREAAEKVVDLVFKLKKEGIELKFIDMGGGLGVKY-HP 250
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P++L D + +V L LIIEPGRSLIA L+ V +K K+F+++D
Sbjct: 251 DDNPPTPKDLADAIIPVVKQTGLKLIIEPGRSLIAEAGALITKVIFLKDKQEKHFVIVDS 310
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +L+RP++Y+AY H+ ++ +D E+ D+VGP+CE+ DFL +R++ +RG L
Sbjct: 311 GMNDLVRPAMYNAYHHV--LNVQEKDEEMIA-DIVGPICETGDFLALDRKIGKVERGDLL 367
Query: 433 VVHDAGAYCMSMASTYNLK 451
+ AGAY SM+S YN++
Sbjct: 368 AIMTAGAYGSSMSSNYNVR 386
>gi|359789111|ref|ZP_09292069.1| diaminopimelate decarboxylase [Mesorhizobium alhagi CCNWXJ12-2]
gi|359255040|gb|EHK57989.1| diaminopimelate decarboxylase [Mesorhizobium alhagi CCNWXJ12-2]
Length = 421
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 226/391 (57%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ + V PFY YS + R+ +++A EGL+S++ YA+KAN+N
Sbjct: 8 DGVLHAEDVALPDIAQAVGT-PFYCYSTATLARHFNVFRKAFEGLDSLVCYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VS ELR AL AG P K +F+G GK ++ A G+ NV+S
Sbjct: 67 VLATLAKLGAGADVVSEGELRRALAAGIPPEKILFSGVGKTAREMDFALAAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSERAVAAGKVAPVSLRINPDVDAKTHRKISTGRAENKFGIPWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + F DA L+V + ++A G ++++++GGGLGI Y
Sbjct: 187 GLPG-IRVTGIDTHIGSQITDLQPFDDAFALLVELVGTLKADGHAIEHIDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P V++ V + L ++ EPGR ++ N LV+ V VK KNF+++
Sbjct: 246 TDNSPPPLPDAYSAIVKKHVGNLGLKVMFEPGRLIVGNAGILVSQVIFVKEGDAKNFLIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V P DA D+VGPVCE+ D+LG +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVVRQPADAPRMTADIVGPVCETGDYLGHDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ V AGAY A TYN ++ PE V+
Sbjct: 366 LIAVMTAGAYGAVQAGTYNTRLLVPEVLVKG 396
>gi|89091913|ref|ZP_01164868.1| diaminopimelate decarboxylase [Neptuniibacter caesariensis]
gi|89083648|gb|EAR62865.1| diaminopimelate decarboxylase [Oceanospirillum sp. MED92]
Length = 418
Score = 278 bits (711), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 235/402 (58%), Gaps = 17/402 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L CEDV + V E P Y+YS+ + R AY ALEG S++ YA+KAN+N
Sbjct: 8 NGQLCCEDVALAGVAEEF-GTPTYVYSRDALERAYLAYADALEGHKSLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL LRAG D K +F+G GK ++ A + G+ N++S
Sbjct: 67 VLNVLARLGAGFDIVSVGELERVLRAGGDAAKIVFSGVGKQPHEIQRALEVGIRCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + R+NPDVD HPY++TG K +KFGI + DAV+
Sbjct: 127 EAELERVNEVAGSEGKVAAISFRVNPDVDAGTHPYISTGLKENKFGIDID------DAVR 180
Query: 251 -----AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A + + +VG CH+GS +T+VD F DA ++ +DKI QG ++ +L++GGGL
Sbjct: 181 IYSRAADMDHVDVVGMDCHIGSQLTEVDPFLDALDRVLMLVDKIAEQGIKIKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y T V P P+ I V + V R+L LI EPGRS+ AN ++ V +K G K
Sbjct: 241 GVCY--TDEVPPTPQEYIAEVLKKVEGRDLELIFEPGRSIAANAGVMLTRVEFLKCTGEK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF +IDG+M +LIRPSLY AYQ I V + E ++D+VGPVCE+ DFLGK+R L
Sbjct: 299 NFAIIDGAMNDLIRPSLYSAYQEIVPVM-LRETGEEQQWDLVGPVCETGDFLGKDRSL-N 356
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G L V AGAY MAS YN + RP E + S +I
Sbjct: 357 LEAGDLLAVCSAGAYGFVMASNYNSRGRPAEVMIDDNKSYLI 398
>gi|357023471|ref|ZP_09085662.1| diaminopimelate decarboxylase [Mesorhizobium amorphae CCNWGS0123]
gi|355544585|gb|EHH13670.1| diaminopimelate decarboxylase [Mesorhizobium amorphae CCNWGS0123]
Length = 422
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 224/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + D+ +V PFY YS +TR+ + QA GL++++ YA+KAN+N
Sbjct: 8 DGVLYAEDVAISDIAASVGT-PFYCYSTATLTRHFRVFAQAFAGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG GA +VS ELR AL AG +K +F+G GK ++ A G+ NV+S
Sbjct: 67 VLRTLARLGAGADVVSEGELRRALAAGIPASKILFSGVGKTAREMDFALSAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELELLSACAAALGKVAPVSLRINPDVDARTHKKISTGKAENKFGIPWQKARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P +K+ G H+GS IT++ F DA L+V+ + +R G ++++++GGGLGI Y
Sbjct: 187 SLPG-IKVTGIDTHIGSQITELQPFDDAFALLVDLVGALRDDGHAIEHVDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P + VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNSPPPLPDAYAEIVRKHVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V P A DVVGPVCE+ D++G +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVVQQPAAAPRMTVDVVGPVCETGDYIGLDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY A TYN ++ PE V
Sbjct: 366 LIAIATAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|404494077|ref|YP_006718183.1| diaminopimelate decarboxylase [Pelobacter carbinolicus DSM 2380]
gi|77546097|gb|ABA89659.1| diaminopimelate decarboxylase [Pelobacter carbinolicus DSM 2380]
Length = 417
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 152/391 (38%), Positives = 231/391 (59%), Gaps = 9/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CEDV ++D+ V PFY+YS ++R++EA+ A + +I Y+IKAN+N
Sbjct: 8 DNDLFCEDVALKDIAAQV-GTPFYVYSHATLSRHLEAFSSAFADVPHLICYSIKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L+ G +VSG EL A + G DP K +++G GK ++ A Q G+ + NV+S
Sbjct: 67 VLKTFVSHNAGFDIVSGGELFRAQQVGCDPAKIVYSGVGKTEAEIADALQAGILMFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L+ I VA R+ GKK + +R+NPDVDPQ HPY++TG K +KFGI +
Sbjct: 127 RQELDTINAVAGRL-GKKAGIAIRVNPDVDPQTHPYISTGMKKAKFGINISQALDDYRLA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ PN L+++G CH+GS +TK+ F DA + + ++ +GF + YL++GGGLGI Y
Sbjct: 186 ASLPN-LEVIGVDCHIGSQLTKLSPFVDAIAKIRELVQTLQNEGFGIKYLDLGGGLGITY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + + E + L+ EPGR ++ N LV+ V VK KNF++
Sbjct: 245 EEEEP--PSPADYAEVIIEGTKGLGVTLVFEPGRVMVGNAGMLVSKVLYVKEGEAKNFVI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L RP+LY +YQ I+ V + D ++ DVVGP+CES DFL ++RE+ +G
Sbjct: 303 VDAAMNDLTRPALYGSYQGIQAVDRSTSDTIVA--DVVGPICESGDFLAQDREITAFSQG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L V AGAY +M+S YN + R PE V+
Sbjct: 361 DLLAVASAGAYGFTMSSNYNSRRRVPEIMVK 391
>gi|108802931|ref|YP_642868.1| diaminopimelate decarboxylase [Rubrobacter xylanophilus DSM 9941]
gi|108764174|gb|ABG03056.1| diaminopimelate decarboxylase [Rubrobacter xylanophilus DSM 9941]
Length = 416
Score = 276 bits (706), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+CEDV + ++ P Y+YS + R ++A GL+ ++ +A+KAN N +
Sbjct: 9 GVLHCEDVPLHEIARGAGT-PAYVYSYAALERAYREVEEAFSGLDHLVCFAVKANGNLAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L L LG GA +VSG EL A+RAGFDP K +F G GK ++L E + + NV+S
Sbjct: 68 LRALASLGAGADIVSGGELYRAMRAGFDPKKVVFAGVGKTEQELKAGLGERILMFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE++ + + GK+ V LRINP VDP H +++TGN SKFGI ++ + K
Sbjct: 128 GELEHLERLAHLHGKRARVALRINPGVDPGTHEHISTGNVESKFGIPADEALSLAERAKG 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
+ L+G H H+GS I KV + ++ +D++R++GF++ YLNIGGGLGI Y
Sbjct: 188 F-RCVDLIGVHQHIGSQIVKVAPYVESVERSAALVDELRSRGFDIRYLNIGGGLGIRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P L++ +R + + ++ E GR + L+ V K +G ++FIV D
Sbjct: 247 E--ETPSPAELVEAIRPTLAASGAKILCEMGRYIAGPAGALLTGVLYRKRSGERSFIVAD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M +LIRPSLY AY V P + A+ ++ D+VGPVCES DFL ++R+LP G
Sbjct: 305 AGMNDLIRPSLYGAYHE---VLPLDEGADQTRADLVGPVCESGDFLARDRDLPDAREGDV 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L V +AGAY SMAS YN + RP E VR
Sbjct: 362 LAVMNAGAYGFSMASNYNSRPRPAEVLVR 390
>gi|312115134|ref|YP_004012730.1| diaminopimelate decarboxylase [Rhodomicrobium vannielii ATCC 17100]
gi|311220263|gb|ADP71631.1| diaminopimelate decarboxylase [Rhodomicrobium vannielii ATCC 17100]
Length = 422
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 153/406 (37%), Positives = 223/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS K +G L+ E + + V PFY YS I R+ + +A GL++++ YAI
Sbjct: 2 HHFSYK-NGILHAEGAALDAIARDVGT-PFYCYSTATIERHYRVFAEAFTGLDALVCYAI 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ L KLG GA +VS E+R AL AG K +F+G GK ++ A G+
Sbjct: 60 KANSNVSVIRTLAKLGSGADVVSEGEIRRALAAGIPADKIVFSGVGKTEAEMAFALDAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +L + + G+ + RINPDVD + H ++TG KFG+ +
Sbjct: 120 YGFNVESEAELRALSQVASGRGRTARIAFRINPDVDAKTHAKISTGKSEHKFGVSWRDAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ P L + G H H+GS IT ++ FRDA LM N ++ +R G + Y+N+GG
Sbjct: 180 ALYALARDLPG-LDVAGVHMHIGSQITHMEPFRDAFDLMANLVEDLRRDGHTISYVNLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y V P P + + V L L+ EPGR ++ N LV V K +G
Sbjct: 239 GLGIPYRWDQEVPPLPSDYAEIVIGLSNRLGARLLFEPGRIIVGNAGILVTQVIYSKHSG 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D M +L+RP+LYDAY I V+ A ++A I + DVVGPVCE+ DFL K+R++
Sbjct: 299 EKRFVIVDAGMNDLVRPTLYDAYHDIWPVNEAQRNASIGRADVVGPVCETGDFLAKDRDM 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G + V AGAY + +STYN + PE V ++ P
Sbjct: 359 PELAPGDLIAVMTAGAYGAAQSSTYNTRRLVPEVLVNGADYAVVRP 404
>gi|294142609|ref|YP_003558587.1| diaminopimelate decarboxylase [Shewanella violacea DSS12]
gi|293329078|dbj|BAJ03809.1| diaminopimelate decarboxylase [Shewanella violacea DSS12]
Length = 414
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 238/404 (58%), Gaps = 16/404 (3%)
Query: 72 DGFLY------CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
D FLY ED V D+ T P Y+YS+ + R+ A+ +A+ +I YA+K
Sbjct: 2 DHFLYKNNELLAEDCSVADLART-HGTPLYIYSRATLERHWHAFDRAVADHPHLICYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VSG EL+ ++AG DP K +F+G GK ++ +A G+
Sbjct: 61 ANSNIAVLNVLARLGSGFDIVSGGELQRVIQAGGDPAKVVFSGVGKTAAEMEMALNLGIH 120
Query: 186 -VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + +VA RI GK V LRINPDVD HPY++TG K++KFGI E+ +
Sbjct: 121 CFNVESAAELEQLNIVAGRI-GKLAPVSLRINPDVDAGTHPYISTGLKDNKFGIAMEQAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A PN LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GG
Sbjct: 180 AIFARAAALPN-LKVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIHIEHFDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P+P + E + R L LI EPGR++ AN V V +K NG
Sbjct: 239 GLGVPY--DDETPPQPAVYAAALIERLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKGNG 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++DG+M +LIRP+LY A+Q+I V+ P+D E +D+VGPVCE+ DFLGK+REL
Sbjct: 297 DKHFALVDGAMNDLIRPALYSAWQNIIPVN--PRDGETLNYDIVGPVCETGDFLGKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L V +GAY +M+S YN + R E V + +I
Sbjct: 355 NLA-AGDFLAVRSSGAYGFTMSSNYNSRPRAAELMVDGEQAYVI 397
>gi|291278645|ref|YP_003495480.1| diaminopimelate decarboxylase [Deferribacter desulfuricans SSM1]
gi|290753347|dbj|BAI79724.1| diaminopimelate decarboxylase [Deferribacter desulfuricans SSM1]
Length = 417
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 235/397 (59%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K DG ++CE+V ++ + V PFY+YS + R+ E + + E + II +A+
Sbjct: 2 HHFHYK-DGEMFCEEVPLKKIAAEV-GTPFYVYSAATLKRHFEVFDASFEEVPHIICFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L KL CGA +VSG EL AL+AG DP K ++ G GK E++ A + +
Sbjct: 60 KANSNLAVLNLLGKLSCGADIVSGGELYRALKAGIDPKKIVYAGVGKTEEEIEFALKSDI 119
Query: 185 FV-NVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S +LE I VA R+ KK + LR+NP+VDP+ HPY++TG K +KFGI E
Sbjct: 120 LMFNIESFQELEKINEVAGRLK-KKARIALRVNPNVDPKTHPYISTGLKKNKFGIPIENA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + N +++VGAHCH+GS +T++ F DA +MV+ I ++++G + YL++G
Sbjct: 179 YQEYEYAASLDN-IEVVGAHCHIGSQLTEISPFVDATKIMVDMIKTLKSKGINIKYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y + P P+ D + +++ ++ L+ EPGR + N LV V K
Sbjct: 238 GGLGIKY--NEEMPPSPKEYADKIIDVIRGLDVTLVFEPGRVIAGNAGVLVTRVLYTKET 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
K+F ++D +M +L+RP LY ++ I+ V D+VGP+CE+ DFL K+R
Sbjct: 296 ELKHFKIVDAAMNDLMRPILYGSFHDIKPVKEGHYKTVYG--DIVGPICETGDFLAKDRN 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +G + V AGAY +M+S YN + R PE V
Sbjct: 354 LPDFQQGDLIAVMSAGAYGFTMSSNYNSRPRVPEILV 390
>gi|349574230|ref|ZP_08886187.1| diaminopimelate decarboxylase [Neisseria shayeganii 871]
gi|348014178|gb|EGY53065.1| diaminopimelate decarboxylase [Neisseria shayeganii 871]
Length = 409
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 230/397 (57%), Gaps = 10/397 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L CE++ ++ E P Y+YS+ +T AY QA LN +I YA+KAN N IL
Sbjct: 3 LRCENLAFAELAEQF-GTPLYVYSQAALTDAYRAYTQAFAALNPLICYAVKANGNLSILR 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LGCG +VSG EL L AG + K IF+G GK ++ A Q GV NV+S +
Sbjct: 62 HFAALGCGFDIVSGGELARVLAAGGEAGKTIFSGVGKSEAEMAFALQSGVKCFNVESLPE 121
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
L+ + VA R+ G V LRINPDVD Q HPY++TG K +KFGI + + A
Sbjct: 122 LDRLNAVAGRL-GLSAPVSLRINPDVDAQTHPYISTGLKANKFGIAMQDAEAAYLHAAAL 180
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ L +VG CH+GS +T + +A ++ IDK+ A G ++++++GGG+GI Y
Sbjct: 181 PH-LNVVGIDCHIGSQLTNLAPLSEACERLLMLIDKLSAAGMVLEHIDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P + V+ L+ R L+LI+EPGRSL+ N L+ V VK NG K+F+++D
Sbjct: 240 S--VPDLHAYAEAVQRLLGGRKLSLILEPGRSLVGNAGTLLTRVEFVKKNGDKSFVIVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LY AY HIE VSPA + ++ D+VGP+CE+ DFL + R + G L
Sbjct: 298 AMNDLMRPALYQAYHHIENVSPAAGEPFVA--DIVGPICETGDFLAQNRAIAAC-AGDLL 354
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
V AGAY SMAS YN + R E V + +I P
Sbjct: 355 AVRSAGAYAASMASNYNTRPRAAEVLVDGDRAKLIRP 391
>gi|358449862|ref|ZP_09160339.1| diaminopimelate decarboxylase [Marinobacter manganoxydans MnI7-9]
gi|357225911|gb|EHJ04399.1| diaminopimelate decarboxylase [Marinobacter manganoxydans MnI7-9]
Length = 416
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 223/389 (57%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY ED+ V + + P Y+YS+ + R+ AY AL ++ YA+KAN+N
Sbjct: 8 DGELYAEDIPVSAIADRF-GTPAYVYSRATLERHYRAYDDALRDHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL LRAG DP++ +F+G GK ++ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSAGELERVLRAGGDPSRVVFSGVGKQEWEMKRALEVGVRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ + + G K + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 DTELDRLNAVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEASQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L + G CH+GS +T V F DA ++ ID + QG + +L++GGGLG+ Y
Sbjct: 187 GMPN-LDVKGVDCHIGSQLTSVSPFLDALDRVLALIDSLADQGIHIHHLDMGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
H P+P + + + E + R L LI+EPGRS+ AN LV V +K +NF +I
Sbjct: 246 HEQP--PQPSDYVKALAERLGDRKLELILEPGRSIAANAGILVTRVEFLKCTEHRNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+Q I V P QD E +D+VGPVCE+ DFLGK+R L G
Sbjct: 304 DAAMNDLIRPALYSAWQAIIPVKPH-QDGEEKAWDLVGPVCETGDFLGKDRHLRL-QAGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + RPPE V
Sbjct: 362 LLAVRSAGAYGFVMSSNYNTRNRPPELMV 390
>gi|374620720|ref|ZP_09693254.1| diaminopimelate decarboxylase [gamma proteobacterium HIMB55]
gi|374303947|gb|EHQ58131.1| diaminopimelate decarboxylase [gamma proteobacterium HIMB55]
Length = 425
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 240/396 (60%), Gaps = 10/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+++A G L CE+V V ++ E P Y+YS+ IT + +A+K A + +I YA+KA
Sbjct: 11 FTRQA-GSLLCENVPVAELAEQ-HGTPLYVYSQSAITESFQAWKTAFDSAPHLICYAVKA 68
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N IL+ L LG G +VSG EL L AG D +K +F+G GK ++ A + G+
Sbjct: 69 NSNIAILKLLASLGSGFDIVSGGELERVLAAGGDASKVVFSGVGKSPAEIARALEVGIRC 128
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQW 244
NV+S +L+ I + G+ + +RINPDVD + HPY++TG K +KFG+ E+ L
Sbjct: 129 FNVESATELQLIEQIAAERGEIARISIRINPDVDAKTHPYISTGLKENKFGVNAERALAL 188
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ A A + L+ VG CH+GS +T+++ F ++ + + + ++R G +++++IGGG
Sbjct: 189 YQHAQSA--SHLEPVGVDCHIGSQLTQIEPFIESVQHLRDLVLELRDSGVNIEHIDIGGG 246
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LGI Y +P P +LI VR + L+IEPGRS++ N L+ V K T
Sbjct: 247 LGIRYADES--IPSPSDLISAVRVELDPLGAELMIEPGRSIVGNAGALLTKVLVEKAGDT 304
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +L+RP+LY A+Q+I VS + +DAE +D+VGPVCE+ DFLGKEREL
Sbjct: 305 KNFAIVDAAMNDLLRPALYSAWQNIVEVSIS-EDAEKHTYDIVGPVCETGDFLGKEREL- 362
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+ G L V AGAY SM+S YN + R E V+
Sbjct: 363 SAHEGDLLAVMGAGAYSFSMSSNYNSRPRAAEILVK 398
>gi|398354877|ref|YP_006400341.1| diaminopimelate decarboxylase LysA [Sinorhizobium fredii USDA 257]
gi|390130203|gb|AFL53584.1| diaminopimelate decarboxylase LysA [Sinorhizobium fredii USDA 257]
Length = 422
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 226/394 (57%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V D+ V PFY YS + R+ + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVTDIARAVGT-PFYCYSTATLERHYRVFAQAFADVDAMVCYAVKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ L + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSEGELRRALAAGIPADRIMFSGVGKTPREMDLGLEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEILNQRAVRAGKQAHVSFRINPDVDARTHAKISTGKKENKFGISWERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L K+ G H+GS IT++ F DA L+ +D +R+ G +D+++IGGGLGI
Sbjct: 183 AHAATLPGIKVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + +A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVKISAANAPRIKADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + AGAY + TYN ++ PE VR
Sbjct: 363 PGDLFAIGSAGAYGAVQSGTYNSRLLVPEVLVRG 396
>gi|291288389|ref|YP_003505205.1| diaminopimelate decarboxylase [Denitrovibrio acetiphilus DSM 12809]
gi|290885549|gb|ADD69249.1| diaminopimelate decarboxylase [Denitrovibrio acetiphilus DSM 12809]
Length = 419
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 221/386 (57%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE+V ++ + E V PFY+YS + + + A EG++ I+ YA+KA N +L
Sbjct: 11 LHCENVSLKQIAEEV-GTPFYVYSANGLRKRFREFDNAFEGMDRIVCYAVKACGNIGVLA 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L G GA +VSG EL AL+AG D K +F G GK E++ + + N +S +
Sbjct: 70 LLGSEGSGADIVSGGELHRALKAGMDKNKIVFAGVGKTEEEIKFGISSDILMFNAESRQE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
++ I + + +R+NPDVD + HPY++TG K +KFGI +K + + P
Sbjct: 130 IDLINKCAGEMNATARIAIRVNPDVDAKTHPYISTGLKKNKFGIPVDKAKEDYIYASSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N ++ VG HCH+GS +T++ FRDAA ++V I +R G + YL++GGGLGI Y+
Sbjct: 190 N-IEAVGIHCHIGSQLTEISPFRDAAAILVKLIKDLRKNGVNIKYLDLGGGLGITYHDEH 248
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
A P + + ++E++ + L+ EPGR++ N LV V K K+F ++D +
Sbjct: 249 A--PSHKEYAEAIKEVIRDEDFTLVFEPGRNISGNAGALVTKVLYTKETEEKSFKIVDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L RPSLY+AY ++ V + + D+VGP+CES+DFL K+R +P RG
Sbjct: 307 MNDLARPSLYNAYHEVQAVDSTEK---MFTGDIVGPICESSDFLAKDRNMPNVKRGGLYA 363
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V D GAY M+MAS YN + R PE V
Sbjct: 364 VMDTGAYGMTMASNYNSRPRVPEILV 389
>gi|430005340|emb|CCF21141.1| diaminopimelate decarboxylase [Rhizobium sp.]
Length = 422
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 155/402 (38%), Positives = 234/402 (58%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + ++ + V PFY+YS + R+ + +A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPIPEIAKAVGT-PFYVYSTATLERHYTVFAKAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VSG ELR AL AG ++ +F+G GK ++ LA + G++ NV+S
Sbjct: 67 VLKTLARLGAGVDVVSGGELRRALAAGIPASRIMFSGVGKTAAEMDLALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + ++ G + +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNQRAQRKGTRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L + G H+GS IT + F DA L+ +D +RA G +D+++IGGGLGI
Sbjct: 183 AHAAQLPGIDVTGIDMHIGSQITDLQPFEDAFRLLRELVDTLRADGHRIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P +TV+ + S + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNDPPPLPDAYAETVKRQLRSLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKAF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LYDAY I V A A + D+VGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYDAYHEIRPVIAAAASAPRIRGDIVGPVCETGDYLALDREMAAPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE VR +I P
Sbjct: 363 PGDLIAVGSAGAYGAVQAGTYNSRLLVPEVLVRGSDFHVIRP 404
>gi|337286485|ref|YP_004625958.1| diaminopimelate decarboxylase [Thermodesulfatator indicus DSM
15286]
gi|335359313|gb|AEH44994.1| diaminopimelate decarboxylase [Thermodesulfatator indicus DSM
15286]
Length = 422
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 231/397 (58%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG LY EDV V+ + + V PFYLYS + R+ + + +A GL ++ Y+I
Sbjct: 2 HHFQYR-DGELYAEDVPVRAIAKKV-GTPFYLYSTATLKRHFQVFDEAFSGLPHLVCYSI 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL G GA +VSG EL AL+AGF P K +F+G GK ++ A + G+
Sbjct: 60 KANSNLAILRLFANKGSGADIVSGGELYRALKAGFPPKKIVFSGVGKTQREMREALKAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-L 242
+ NV+S +L+ + ++ GK + +RINPDVDP+ HP++ TG SKFG+ E
Sbjct: 120 LMFNVESLGELKTLAQVAKRMGKVAPIAIRINPDVDPKTHPHITTGLMKSKFGLDVETAF 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ +L A K HPN L ++G CH+GS +T++ F +A + +++K++ G ++ Y+++G
Sbjct: 180 EAYLFA-KEHPN-LDILGVDCHIGSQLTEISPFVEALKRIKIFVEKLKEHGIKIKYIDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P +++ + ++ LI+EPGR ++ N LV V K
Sbjct: 238 GGLGIVYGKESP--PPPSEYAQALKQELAGLDVTLILEPGRVIVGNAGILVTRVLYFKET 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF++ID +M +L+RP LY AY I + + ++ DVVGPVCE+ DF ++RE
Sbjct: 296 PVKNFVIIDAAMNDLLRPVLYQAYHEIIPILSKNRPKLVA--DVVGPVCETGDFFARDRE 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+P G L V AGAY MAS YN + RP E V
Sbjct: 354 IPKVKSGELLAVMSAGAYGFVMASNYNSRPRPAEVMV 390
>gi|227823226|ref|YP_002827198.1| diaminopimelate decarboxylase [Sinorhizobium fredii NGR234]
gi|227342227|gb|ACP26445.1| diaminopimelate decarboxylase [Sinorhizobium fredii NGR234]
Length = 422
Score = 274 bits (700), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 229/402 (56%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V D+ V PFY YS + R+ + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVTDIARAV-GTPFYCYSTATLERHYRVFAQAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ L + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPAERIMFSGVGKTPREMDLGLEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEILNQRAVRAGKQAHVSFRINPDVDARTHAKISTGKKENKFGISWERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L K+ G H+GS IT++ F DA L+ +D +R+ G +D+++IGGGLGI
Sbjct: 183 AHAATLPGIKVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHAIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + +A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVKISAANAPRIKADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRP 404
>gi|24375791|ref|NP_719834.1| diaminopimelate decarboxylase LysA [Shewanella oneidensis MR-1]
gi|24350739|gb|AAN57278.1| diaminopimelate decarboxylase LysA [Shewanella oneidensis MR-1]
Length = 414
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/390 (40%), Positives = 230/390 (58%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY E RV D+ +T P Y+YS+ + R+ A+ A+ G ++ YA+KAN+N
Sbjct: 8 DNTLYAEGCRVNDLAQTY-GTPLYIYSRATLERHWHAFNNAVAGHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK + ++ A G++ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+LE + +VA R+ GK V LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 127 SAELEQLNLVAGRL-GKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEAVFARA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P+ L++ G CH+GS +T++ F DA M++ ID++ QG +++ ++GGGLG+ Y
Sbjct: 186 HALPH-LQVKGVDCHIGSQLTEIQPFLDAMDRMLSLIDRLAEQGIVIEHFDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + + R L LI EPGR++ AN V V +K N K F +
Sbjct: 245 --DDETPPHPDVYAAALLKRLGHRKLKLIFEPGRAIAANAGIFVTEVLYLKENSDKRFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q I V+ P+D + FD+VGPVCE+ DFLGK+RE G
Sbjct: 303 VDGAMNDLIRPALYSAWQKIIPVT--PRDDQAHVFDIVGPVCETGDFLGKDREFAIAP-G 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV +GAY +MAS YN + R E V
Sbjct: 360 DLLVVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|86160486|ref|YP_467271.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776997|gb|ABC83834.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 427
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 231/396 (58%), Gaps = 7/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H K+ G L+ E V V+ + E P Y+YS +TR+ + ++L GL+ ++ YA+
Sbjct: 3 HFLRKR--GVLHAEAVPVEQLAEAYGT-PLYVYSTATLTRHWKVLHRSLAGLDHLVCYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L +LG G +VSG EL L+AG P K +F+G GK +++ A + GV
Sbjct: 60 KANSNLAVLSLFARLGSGFDIVSGGELYRVLKAGGHPGKVVFSGVGKRDDEIAFALESGV 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
V NV+S +L + + +R G + + LR+NPDVDP+ HPY++TG +KFG+ ++ +
Sbjct: 120 KVLNVESAPELARVSIVARRMGVRAPIALRVNPDVDPKTHPYISTGLSENKFGVSVDEAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
L A+ A L+L G CH+GS IT V F DA ++ + + QG + ++++GG
Sbjct: 180 R-LYALAAQDPALELRGVACHIGSQITTVRPFLDAIARVLALVKDLGKQGIRLGHVDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P +++ + + +++EPGR L+ N LV V VK +G
Sbjct: 239 GLGITYADEEP--PHPDEYGRAIKKALSRFDGEVMLEPGRVLVGNAGVLVTRVLHVKESG 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+V+D +M +L+RPS YDA+ IE +DAE DVVGP+CES+DFL ++R +
Sbjct: 297 RKVFVVVDAAMNDLVRPSYYDAHHEIEPAGAPRKDAEEIVCDVVGPICESSDFLARKRRM 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P P RG LVV AGAY +M+S YN + R E V
Sbjct: 357 PRPVRGDLLVVRSAGAYGFAMSSNYNSRPRAAEVLV 392
>gi|345876340|ref|ZP_08828113.1| diaminopimelate decarboxylase [Neisseria weaveri LMG 5135]
gi|417956873|ref|ZP_12599808.1| diaminopimelate decarboxylase [Neisseria weaveri ATCC 51223]
gi|343966639|gb|EGV34893.1| diaminopimelate decarboxylase [Neisseria weaveri LMG 5135]
gi|343969756|gb|EGV37964.1| diaminopimelate decarboxylase [Neisseria weaveri ATCC 51223]
Length = 407
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 227/391 (58%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L CE V + E P Y+YS+ +T +AY A L++++ YA+KAN N IL+
Sbjct: 4 LTCEHVPFSQIAEQF-GTPVYVYSQAALTEAFQAYTDAFSELDTLVCYAVKANGNLSILK 62
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A + GV NV+S +
Sbjct: 63 HFAGLGSGFDIVSGGELARVLAAGGDAGKTIFSGVGKSEAEIGFALEAGVKCFNVESLPE 122
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I + GK + LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 123 LDRINAVAERLGKTAPISLRVNPDVDAKTHPYISTGLKANKFGI------AYTDALEAYR 176
Query: 254 -----NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
LK+VG CH+GS +T + +A ++ +D++ +G + ++++GGG+GI
Sbjct: 177 YASALGRLKIVGIDCHIGSQLTDLSPLAEACERILLLVDRLAEEGIALQHIDLGGGIGIV 236
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y +P + D V + + R L LI+EPGRSL+ N L+ V VK KNFI
Sbjct: 237 YRDED--VPDLKAYADNVAKQLAGRGLKLILEPGRSLVGNAGTLLTRVEFVKQGEEKNFI 294
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L+RPSLY+AY HIE V P+ +E + DVVGP+CE+ DFLGK+R++ +
Sbjct: 295 IVDAAMNDLMRPSLYEAYHHIEAVE--PRGSEAVEADVVGPICETGDFLGKDRKIAC-EA 351
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY MSMAS YN + R E V
Sbjct: 352 GDLLAIRSAGAYAMSMASNYNTRNRAAEVMV 382
>gi|372272885|ref|ZP_09508933.1| diaminopimelate decarboxylase [Marinobacterium stanieri S30]
Length = 418
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 162/392 (41%), Positives = 229/392 (58%), Gaps = 13/392 (3%)
Query: 72 DGFLYCEDV---RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
+G L+ E+V RV D T P Y+YS+ + R Y QALEG ++++ YA+KAN+
Sbjct: 8 NGRLHAEEVLLSRVADEFGT----PTYVYSRDALERAYLDYAQALEGRDALVCYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +L L +LG G +VS EL LRAG DP K +F+G GK ++ A G+F N
Sbjct: 64 NLAVLNVLARLGAGFDIVSAGELERVLRAGGDPAKVVFSGVGKQPAEIRRALDVGIFCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
++S+ +L+ + + G K V R+NPDVD HPY++TG K +KFGI +
Sbjct: 124 IESDAELDRVNAVAAEMGVKAPVSFRVNPDVDAGTHPYISTGLKENKFGIGIDTAAEVYR 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A N +++VG CH+GS +T++ F DA ++ +D + +G ++ +L++GGGLG+
Sbjct: 184 RAAAMDN-VEVVGMDCHIGSQLTEISPFLDALDRLLQLLDTLADEGIQIHHLDLGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y T P P+ I V E + R L LI EPGRS+ AN ++ V +K NG KNF
Sbjct: 243 CY--TDEQPPAPQEYIAAVLEKLGERELKLIFEPGRSIAANAGVMLTRVEFLKQNGDKNF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+IDG+M +LIRPSLY AYQ I V ++ E +D+VGPVCE+ DFLGK+R+L
Sbjct: 301 AIIDGAMNDLIRPSLYSAYQEIIPVE-LREEGETKAWDLVGPVCETGDFLGKDRQL-NLQ 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + RP E V
Sbjct: 359 PGDLLAVCSAGAYGFVMASNYNTRPRPAEVMV 390
>gi|378827209|ref|YP_005189941.1| protein LysA [Sinorhizobium fredii HH103]
gi|365180261|emb|CCE97116.1| lysA [Sinorhizobium fredii HH103]
Length = 422
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 229/402 (56%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V D+ V PFY YS + R+ + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVTDIARAV-GTPFYCYSTATLERHYRVFAQAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ L + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPADRIMFSGVGKTPREMDLGLEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEILNQRAVRAGKQAHVSFRINPDVDARTHAKISTGKKENKFGISWERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L K+ G H+GS IT++ F DA L+ +D +R+ G +D+++IGGGLGI
Sbjct: 183 AHAATLPGIKVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + +A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVKISAANAPRIKADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRP 404
>gi|94499872|ref|ZP_01306408.1| putative diaminopimelate decarboxylase [Bermanella marisrubri]
gi|94428073|gb|EAT13047.1| putative diaminopimelate decarboxylase [Oceanobacter sp. RED65]
Length = 417
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 229/390 (58%), Gaps = 9/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V D+ + P Y+YS+ + + Y A + +++I YA+KAN+N
Sbjct: 9 NGELFAEQCAVSDLADRY-GSPLYIYSRKAFSEHYLEYANAFKNEDALICYAVKANSNIA 67
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG G +VS EL L+AG DP+K +F+G K +++ A GV NV+S
Sbjct: 68 VLNVLAKLGAGFDIVSVGELERVLKAGGDPSKIVFSGVAKTADEMRRALAVGVHCFNVES 127
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G K + LR+NPDVD Q HPY++TG K +KFG+ + + K
Sbjct: 128 ESELERLNAVAEEMGVKAPLSLRVNPDVDAQTHPYISTGLKENKFGVDIDTAKQVYAKAK 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+++ G CH+GS +T+++ F DA ++ +D+++ Q E++++++GGGLG+ Y
Sbjct: 188 GMQG-IEIKGVDCHIGSQLTQLEPFMDALDRVLVLVDELKEQAIELEHIDLGGGLGVTY- 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P P+ D V + RNL L++EPGRS+ AN V V +K+NG K+F +I
Sbjct: 246 -DDEVPPTPQEFADAVLPKLAGRNLKLVLEPGRSIAANAGIFVTQVEFLKSNGDKHFAII 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT-PDRG 429
DG M +LIRPSLY A+Q I V P + + +DVVGPVCE+ DFLGK+REL P G
Sbjct: 305 DGGMNDLIRPSLYSAWQRIVEVQPREKTPK-QNYDVVGPVCETGDFLGKDRELAILP--G 361
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MAS YN + +P E V
Sbjct: 362 DLLAVKSAGAYGFVMASNYNTRNKPAEVMV 391
>gi|13473029|ref|NP_104596.1| diaminopimelate decarboxylase [Mesorhizobium loti MAFF303099]
gi|14023777|dbj|BAB50382.1| diaminopimelate decarboxylase [Mesorhizobium loti MAFF303099]
Length = 422
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 222/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS +TR+ + QA GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVAIPDIAAQVGT-PFYCYSTATLTRHYRVFAQAFAGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG GA +VS ELR AL AG +K +F+G GK ++ LA + G+ NV+S
Sbjct: 67 VLRTLARLGAGADVVSEGELRRALAAGIPASKILFSGVGKTAREIDLALEAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSARAVALGKVAPISLRINPDVDAKTHKKISTGKAENKFGIAWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT++ F DA L+V+ + +RA G ++++++GGGLGI Y
Sbjct: 187 TLPG-IKVTGIDTHIGSQITELQPFDDAFALLVDLVGALRADGHAIEHVDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNNPPPLPDAYAQIVRKHVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V P D DVVG VCE+ D+LG +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVVQPPADTPRMMVDVVGQVCETGDYLGLDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN ++ PE V
Sbjct: 366 LVAVSTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|120553431|ref|YP_957782.1| diaminopimelate decarboxylase [Marinobacter aquaeolei VT8]
gi|120323280|gb|ABM17595.1| diaminopimelate decarboxylase [Marinobacter aquaeolei VT8]
Length = 416
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 226/389 (58%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY EDV V D+ E P Y+YS+ + R+ AY +AL+ ++ YA+KAN+N
Sbjct: 8 NGELYAEDVAVADIAERF-GTPAYIYSRATLERHYRAYDEALKNRPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL LRAG D K +F+G GK ++ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSAGELERVLRAGGDAGKVVFSGVGKQEWEMKRALEAGVRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ + + G K + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 DTELDRLNKVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEAPAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN L + G CH+GS +T V F DA +++ ID + QG + +L++GGGLG+ Y
Sbjct: 187 SLPN-LDIHGVDCHIGSQLTSVSPFLDALGRVLSLIDTLAEQGIRIRHLDMGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + + + E + R L L++EPGRS+ AN LV V +K +NF +I
Sbjct: 246 QE--TPPQPADYVKALNERMGDRELELVLEPGRSIAANAGILVTRVEFLKCTEHRNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+Q I V P QD+E +D+VGPVCE+ DFLGK+R L G
Sbjct: 304 DAAMNDLIRPALYSAWQAIIPVQPH-QDSEERPWDLVGPVCETGDFLGKDRALRL-KAGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MAS YN + RPPE V
Sbjct: 362 LLAVRSAGAYGFVMASNYNTRNRPPELMV 390
>gi|332716389|ref|YP_004443855.1| diaminopimelate decarboxylase [Agrobacterium sp. H13-3]
gi|418405986|ref|ZP_12979306.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens 5A]
gi|325063074|gb|ADY66764.1| Diaminopimelate decarboxylase [Agrobacterium sp. H13-3]
gi|358007899|gb|EHK00222.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens 5A]
Length = 422
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/402 (38%), Positives = 233/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG G +VSG ELR AL AG + +F+G GK + ++ A + G++ N++S
Sbjct: 67 VLRTLAKLGAGIDVVSGGELRRALGAGVPANRIMFSGVGKTVAEMDYALEAGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRAVKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ ++ +RA G + +++IGGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVESLRADGHTISHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + S N +I EPGR ++ N LV V VK G KNF
Sbjct: 243 PYREDNNPPPLPDAYAHIVKNELKSLNCKIITEPGRLIVGNAGILVTEVIYVKDGGEKNF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V DA K D+VGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHGIRPVVQPAVDAPRIKADIVGPVCETGDYLALDREMAAPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKGDKFHVIRP 404
>gi|152985290|ref|YP_001351336.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PA7]
gi|150960448|gb|ABR82473.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PA7]
Length = 415
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 232/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DGELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A Q GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKSRDDMRRALQVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESSEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T++ F DA ++ +D++ A+G + +L++GGG
Sbjct: 181 IY-ARAAELDHLEVIGVDCHIGSQLTQLAPFLDALERLLGLVDRLAARGIAIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K G
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTGH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+REL
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAAPRRYDLVGPICETGDFLAKDRELA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L + AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAIRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|410479830|ref|YP_006767467.1| diaminopimelate decarboxylase [Leptospirillum ferriphilum ML-04]
gi|424867633|ref|ZP_18291415.1| Diaminopimelate decarboxylase [Leptospirillum sp. Group II 'C75']
gi|124516709|gb|EAY58217.1| Diaminopimelate decarboxylase [Leptospirillum rubarum]
gi|387221945|gb|EIJ76452.1| Diaminopimelate decarboxylase [Leptospirillum sp. Group II 'C75']
gi|406775082|gb|AFS54507.1| diaminopimelate decarboxylase [Leptospirillum ferriphilum ML-04]
Length = 414
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 228/387 (58%), Gaps = 9/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V+ ++ +V+ P Y+YS+ + +Y+QA +G ++I YA+KAN N +IL
Sbjct: 11 LFVEDVPVRKIVSSVDS-PVYIYSEKALREAYSSYQQAFQGHRTLIAYAMKANGNLQILS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L K+G GA +VSG EL A RAG + +F G GK ++ A G+ + NV+S +
Sbjct: 70 MLGKMGSGADVVSGGELFRARRAGIPSDRIVFAGVGKTDGEMREAIDAGILMFNVESSME 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L+ + + GK V LR+NPDVDP+ HPY++TG K SKFGI ++ L+ + A +
Sbjct: 130 LDRLSRVASSMGKVAPVALRVNPDVDPKTHPYISTGMKKSKFGIPVDQALEEYRRAARL- 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P +++VG H H+GS +T++ FRDA MV + ++ G EV +L++GGGLGI Y +
Sbjct: 189 PG-IRIVGIHQHIGSQLTEISPFRDAFDRMVAFARLLKENGIEVTWLDVGGGLGIRYGNE 247
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P PR + + + N+ +I+EPGRS++ N LV V +K K F + D
Sbjct: 248 KP--PTPREVAHEILSRLEGLNVGIILEPGRSIVGNAGILVTEVQYLKETSVKMFYIADA 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +LIRPSLY A+ +L + K D+VGPVCE+ DFL ++RELP + G L
Sbjct: 306 GMNDLIRPSLYGAFH--DLWPVVKKTGAGKKGDLVGPVCETGDFLVQDRELPPAEPGDLL 363
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +MAS YN + RP E V
Sbjct: 364 AVMSAGAYGFAMASNYNARPRPAEVLV 390
>gi|220919297|ref|YP_002494601.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957151|gb|ACL67535.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 427
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/392 (38%), Positives = 231/392 (58%), Gaps = 5/392 (1%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
++ G L+ E V V+++ P Y+YS +TR+ + ++L GL+ ++ YA+KAN+
Sbjct: 5 QRKRGVLHAEAVPVEELARAYGT-PLYVYSTATLTRHWKVLHRSLAGLDHLVCYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-N 187
N +L +LG G +VSG EL L+AG P K +F+G GK +++ A + GV V N
Sbjct: 64 NLAVLSLFARLGSGFDIVSGGELYRVLKAGGHPGKVVFSGVGKRDDEVAFALESGVKVLN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+S +L I + +R G + V LR+NPDVDP+ HPY++TG +KFG+ ++ + L
Sbjct: 124 VESAPELARISIVARRMGLRAPVALRVNPDVDPKTHPYISTGLSENKFGVSVDEARR-LY 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A+ A L++ G CH+GS IT V F DA +++ + + QG + ++++GGGLGI
Sbjct: 183 ALAAQDPALEVRGVACHIGSQITTVRPFLDAIARVLSLVKDLGKQGIRLGHVDVGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P +++ + + +++EPGR L+ N LV V VK +G K F
Sbjct: 243 TYADEEP--PHPDEYGRAIKKALSRFDGEVMLEPGRVLVGNAGVLVTRVLHVKESGRKVF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+V+D +M +L+RPS YDA+ IE +DAE DVVGP+CES+DFL ++R +P P
Sbjct: 301 VVVDAAMNDLVRPSYYDAHHEIEPAGAPRKDAEEIVCDVVGPICESSDFLARKRRMPRPV 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
RG LVV AGAY +M+S YN + R E V
Sbjct: 361 RGDLLVVRSAGAYGFAMSSNYNSRPRAAEVLV 392
>gi|387812853|ref|YP_005428330.1| diaminopimelate decarboxylase [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381337860|emb|CCG93907.1| diaminopimelate decarboxylase, L-lysine biosynthesis [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 416
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 226/389 (58%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY EDV V D+ E P Y+YS+ + R+ AY +AL+ ++ YA+KAN+N
Sbjct: 8 NGELYAEDVAVADIAERF-GTPAYIYSRATLERHYRAYDEALKNRPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL LRAG D K +F+G GK ++ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSAGELERVLRAGGDAGKVVFSGVGKQEWEMKRALEAGVRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ + + G K + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 DTELDRLNKVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEAPAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN L + G CH+GS +T V F DA +++ ID + QG + +L++GGGLG+ Y
Sbjct: 187 SLPN-LDIHGVDCHIGSQLTSVSPFLDALGRVLSLIDTLAEQGIRIRHLDMGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + + + E + R L L++EPGRS+ AN LV V +K +NF +I
Sbjct: 246 QE--TPPQPADYVKALNERLGDRELELVLEPGRSIAANAGILVTRVEFLKCTEHRNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+Q I V P QD+E +D+VGPVCE+ DFLGK+R L G
Sbjct: 304 DAAMNDLIRPALYSAWQAIIPVQPH-QDSEERPWDLVGPVCETGDFLGKDRALRL-KAGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MAS YN + RPPE V
Sbjct: 362 LLAVRSAGAYGFVMASNYNTRNRPPELMV 390
>gi|206603531|gb|EDZ40011.1| Diaminopimelate decarboxylase [Leptospirillum sp. Group II '5-way
CG']
Length = 414
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 229/387 (59%), Gaps = 9/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V+ ++ +V+ P Y+YS+ + +Y++A + ++I YA+KAN N +IL
Sbjct: 11 LFVEDVPVRKIVSSVDS-PVYIYSEKALREAYSSYQEAFQSHRTMIAYAMKANGNLQILS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L K+G GA +VSG EL A RAG + +F G GK ++ A G+ + NV+S +
Sbjct: 70 MLGKMGSGADVVSGGELFRARRAGIPSDRIVFAGVGKTEGEMREAIDAGILMFNVESSME 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L+ + + GK V LR+NPDVDP+ HPY++TG K SKFGI ++ L+ + A +
Sbjct: 130 LDRLSRVASSMGKVAPVALRVNPDVDPKTHPYISTGMKKSKFGIPVDQALEEYRRAARL- 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P +++VG H H+GS +T++ FRDA MV + ++ G EV +L++GGGLGI Y +
Sbjct: 189 PG-IRIVGIHQHIGSQLTEISPFRDAFDRMVAFARLLKENGIEVSWLDVGGGLGIRYGNE 247
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P PR + + + N+ +I+EPGRS++ N LV V +K K F + D
Sbjct: 248 KP--PTPREVAHEILSRLEGLNVGIILEPGRSIVGNAGILVTEVQYLKETSVKMFYIADA 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +LIRPSLY A+ + V P + + K D+VGPVCE+ DFL ++RELP + G L
Sbjct: 306 GMNDLIRPSLYGAFHDLWPVIKKPGNGK--KGDLVGPVCETGDFLVQDRELPPVEPGDLL 363
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +MAS YN + RP E V
Sbjct: 364 AVMSAGAYGFAMASNYNARPRPAEVLV 390
>gi|197124574|ref|YP_002136525.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. K]
gi|196174423|gb|ACG75396.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. K]
Length = 427
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 231/392 (58%), Gaps = 5/392 (1%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
++ G L+ E V V+++ P Y+YS +TR+ + ++L GL+ ++ YA+KAN+
Sbjct: 5 QRKRGVLHAEAVPVEELARAYGT-PLYVYSTATLTRHWKVLHRSLAGLDHLVCYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-N 187
N +L +LG G +VSG EL L+AG P K +F+G GK +++ A + GV V N
Sbjct: 64 NLAVLSLFARLGSGFDIVSGGELYRVLKAGGHPGKVVFSGVGKRDDEIAFALESGVKVLN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+S +L + + +R G + V LR+NPDVDP+ HPY++TG +KFG+ ++ + L
Sbjct: 124 VESAPELARVSIVARRMGLRAPVALRVNPDVDPKTHPYISTGLSENKFGVSVDEARR-LY 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A+ A L++ G CH+GS IT V F DA +++ + + QG + ++++GGGLGI
Sbjct: 183 ALAAQDPALEVRGVACHIGSQITTVRPFLDAIARVLSLVKDLGKQGIRLGHVDVGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P +++ + + +++EPGR L+ N LV V VK +G K F
Sbjct: 243 TYADEEP--PHPDEYGRAIKKALSRFDGEVMLEPGRVLVGNAGVLVTRVLHVKESGRKVF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+V+D +M +L+RPS YDA+ IE +DA+ DVVGPVCES+DFL ++R +P P
Sbjct: 301 VVVDAAMNDLVRPSYYDAHHEIEAAGAPRKDADEIVCDVVGPVCESSDFLARKRRMPRPV 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
RG LVV AGAY +M+S YN + R E V
Sbjct: 361 RGDLLVVRSAGAYGFAMSSNYNSRPRAAEVLV 392
>gi|156105141|gb|ABU49109.1| diaminopimelate decarboxylase [Mesorhizobium ciceri]
Length = 422
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 220/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS +TR+ + Q+ GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVAIPDIAAQVGT-PFYCYSTATLTRHYRVFAQSFAGLDTLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VS ELR AL AG K +F+G GK ++ A G+ NV+S
Sbjct: 67 VLRTLAKLGAGADVVSEGELRRALAAGIPAGKILFSGVGKTAREMDFALAAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSARAVALGKVAPISLRINPDVDARTHKKISTGKAENKFGIPWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT++ F DA L+V+ + +RA G ++++++GGGLGI Y
Sbjct: 187 TLPG-IRITGIDTHIGSQITELQPFDDAFALLVDLVGALRADGHAIEHIDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNNPPPLPDAYAQIVRKHVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V P D DVVGPVCE+ D++G +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVVQPPADTPRMMVDVVGPVCETGDYIGLDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN ++ PE V
Sbjct: 366 LIAVSTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|319781291|ref|YP_004140767.1| diaminopimelate decarboxylase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167179|gb|ADV10717.1| diaminopimelate decarboxylase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 422
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 220/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS +TR+ + Q+ GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVAIPDIAAQVGT-PFYCYSTATLTRHYRVFAQSFAGLDTLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VS ELR AL AG K +F+G GK ++ A G+ NV+S
Sbjct: 67 VLRTLAKLGAGADVVSEGELRRALAAGIPAGKILFSGVGKTAREMDFALAAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSARAVALGKVAPISLRINPDVDARTHKKISTGKAENKFGIPWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT++ F DA L+V+ + +RA G ++++++GGGLGI Y
Sbjct: 187 TLPG-IRITGIDTHIGSQITELQPFDDAFALLVDLVGALRADGHAIEHIDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNNPPPLPDAYAQIVRKHVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V P D DVVGPVCE+ D++G +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVVQPPADTPRMMVDVVGPVCETGDYIGLDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN ++ PE V
Sbjct: 366 LIAVSTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|433772991|ref|YP_007303458.1| diaminopimelate decarboxylase [Mesorhizobium australicum WSM2073]
gi|433665006|gb|AGB44082.1| diaminopimelate decarboxylase [Mesorhizobium australicum WSM2073]
Length = 422
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 221/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS +TR+ + QA GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVAIPDIAAQV-GTPFYCYSTATLTRHYRVFVQAFAGLDTLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VS ELR AL AG K +F+G GK ++ A Q G+ NV+S
Sbjct: 67 VLRTLAKLGAGADVVSEGELRRALAAGVPAGKILFSGVGKTAREMDFALQAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSARAVALGKVAPISLRINPDVDAKTHKKISTGKAENKFGIPWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT++ F DA L+V+ + +R G ++++++GGGLGI Y
Sbjct: 187 TLPG-IKVTGIDTHIGSQITELQPFDDAFALLVDLVGALRGDGHAIEHVDLGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNNPPPLPDAYAQIVRKHVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I+ V P DA DVVG VCE+ D+LG +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHEIKPVVQPPADAPRMVVDVVGQVCETGDYLGLDRDLPRLMAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN ++ PE V
Sbjct: 366 LVAVSTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|385329988|ref|YP_005883939.1| diaminopimelate decarboxylase [Marinobacter adhaerens HP15]
gi|311693138|gb|ADP96011.1| diaminopimelate decarboxylase [Marinobacter adhaerens HP15]
Length = 416
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/389 (40%), Positives = 222/389 (57%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY ED+ V + + P Y+YS+ + R+ AY AL ++ YA+KAN+N
Sbjct: 8 DGELYAEDIPVSAIADRF-GTPAYVYSRATLERHYRAYDDALRDHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL LRAG DP++ +F+G GK ++ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSAGELERVLRAGGDPSRVVFSGVGKQEWEMKRALEVGVRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ + + G K + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 DTELDRLNAVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEASQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L + G CH+GS +T V F DA ++ ID + QG + +L++GGGLG+ Y
Sbjct: 187 GMPN-LDVKGVDCHIGSQLTSVSPFLDALDRVLALIDSLADQGIHIHHLDMGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + + + E + R L LI+EPGRS+ AN LV V +K +NF +I
Sbjct: 246 QEQP--PQPSDYVKALAERLGDRKLELILEPGRSIAANAGILVTRVEFLKCTEHRNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+Q I V P QD E +D+VGPVCE+ DFLGK+R L G
Sbjct: 304 DAAMNDLIRPALYSAWQAIIPVKPH-QDGEEKAWDLVGPVCETGDFLGKDRHLRL-QAGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + RPPE V
Sbjct: 362 LLAVRSAGAYGFVMSSNYNTRNRPPELMV 390
>gi|83643199|ref|YP_431634.1| diaminopimelate decarboxylase [Hahella chejuensis KCTC 2396]
gi|83631242|gb|ABC27209.1| diaminopimelate decarboxylase [Hahella chejuensis KCTC 2396]
Length = 423
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 233/388 (60%), Gaps = 11/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED+ VQ++ E P Y+YS+ + R+++AY+ A++G +I YA+KAN+N +L
Sbjct: 11 LFAEDLSVQEIAEHY-GTPCYIYSRATLERHLKAYQTAMDGYPHMICYAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS E+ L AG P + +F+G GKL ++ A + GV NV+S +
Sbjct: 70 VLARLGAGFDIVSVGEMERVLAAGGKPERIVFSGVGKLEHEMRRALEVGVHCFNVESAPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLD-AVKA 251
LE + + GKK + +R+NPDVDPQ HPY++TG K +KFG+ +E L+ + AV
Sbjct: 130 LERLQQVAADMGKKAPISIRVNPDVDPQTHPYISTGLKENKFGVSIDEALELYHSAAVSP 189
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
H L ++G CH+GS +T++ F DA ++N I+ +R +G + +L++GGGLG+ Y
Sbjct: 190 H---LDVIGIDCHIGSQLTQISPFLDALERVLNIIETLRNEGIRLKHLDLGGGLGVTYNQ 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P V E + L L++EPGRS+ AN +V V +K NG K+F ++D
Sbjct: 247 E--TPPHPNEYARAVMERLKGSGLTLVLEPGRSIAANAGLMVTRVEYLKHNGHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRPSLY A+Q+I V + E +++D+VGPVCE+ DF+GKER L G
Sbjct: 305 AAMNDLIRPSLYGAWQNIVPVRQHSEGKE-ARYDIVGPVCETGDFIGKER-LLNLKPGDL 362
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 363 LAVRSAGAYGFVMSSNYNSRGRAAEVMV 390
>gi|337266127|ref|YP_004610182.1| diaminopimelate decarboxylase [Mesorhizobium opportunistum WSM2075]
gi|336026437|gb|AEH86088.1| diaminopimelate decarboxylase [Mesorhizobium opportunistum WSM2075]
Length = 422
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 220/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS +TR+ + QA GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVAIPDIAAQVGT-PFYCYSTATLTRHYRVFAQAFAGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG GA +VS ELR AL AG K +F+G GK ++ A G+ NV+S
Sbjct: 67 VLRTLARLGAGADVVSEGELRRALAAGIPAGKILFSGVGKTAREIDFALTAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 EPELELLSSRAVALGKVAPISLRINPDVDARTHKKISTGKAENKFGIPWQRARQVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT++ F DA L+V+ + +RA G ++++++GGGLGI Y
Sbjct: 187 ELPG-IKVTGIDTHIGSQITELQPFDDAFALLVDLVGALRADGHAIEHIDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P VR+ V L ++ EPGR ++ N LV+ V VK KNF+V+
Sbjct: 246 VDNNPPPLPDAYAQIVRKYVTKLGLKVMFEPGRLIVGNAGILVSEVIFVKEGDAKNFLVV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ + V P D DVVGPVCE+ D++G +R+LP G
Sbjct: 306 DAAMNDLIRPTLYDAFHDVRPVVQPPADTPRMMVDVVGPVCETGDYIGLDRDLPRLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN ++ PE V
Sbjct: 366 LVAVSTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|333894924|ref|YP_004468799.1| putative diaminopimelate decarboxylase [Alteromonas sp. SN2]
gi|332994942|gb|AEF04997.1| putative diaminopimelate decarboxylase [Alteromonas sp. SN2]
Length = 416
Score = 271 bits (693), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 236/405 (58%), Gaps = 12/405 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +G L+ EDV V D+ + P Y+YS+ + R+ A+ A+ +I YA+KA
Sbjct: 3 FFAYKNGQLFAEDVAVADIAAQYQT-PVYVYSRATLERHWHAFNDAIGEHPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L K+G G +VSG EL + AG D +K +F+G GK +++ A ++G+
Sbjct: 62 NSNLGVLSTLAKIGSGFDIVSGGELARVIEAGGDASKVVFSGVGKKADEIRYALEQGIMC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L I + GKK + LRINPDVD + HPY++TG K +KFGI E+
Sbjct: 122 FNVESEPELHRINAVAESLGKKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALQT 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ + P L +VG CH+GS +T++ F DA ++ ID++ +G +D+L++GGGL
Sbjct: 182 YELAASLPY-LNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERGITIDHLDVGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y P P+ + E ++ R NL LI+EPGR++ AN LV V +K
Sbjct: 241 GVTYNDEEP--PHPKAYAAAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEE 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQD--AEISKFDVVGPVCESADFLGKERE 422
K+F ++D +M +L+RP+LY A+Q+I P Q+ A +DVVGPVCE+ DF+GK+RE
Sbjct: 299 KSFAIVDAAMNDLLRPALYSAWQNI---IPVKQESTATARNYDVVGPVCETGDFIGKDRE 355
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L L V AGAY +MAS YN + RP E V +I++
Sbjct: 356 LAIEPTDL-LAVRSAGAYGFAMASNYNSRCRPAEIMVDGDATIVV 399
>gi|359801045|ref|ZP_09303567.1| diaminopimelate decarboxylase [Achromobacter arsenitoxydans SY8]
gi|359361047|gb|EHK62822.1| diaminopimelate decarboxylase [Achromobacter arsenitoxydans SY8]
Length = 430
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 153/401 (38%), Positives = 242/401 (60%), Gaps = 15/401 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + + LY EDV + + E + P Y+YS+ + ++Y+ A+ ++ Y +
Sbjct: 14 HPYFQYRNNVLYAEDVPLDHLAERLGT-PLYVYSRAALKAAWQSYQSAVGQHPVLVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ +LG G +VSG EL+ AL AG DP++ +F+G GK ++ A Q GV
Sbjct: 73 KANSNLAVLKEFARLGAGFDIVSGGELKRALAAGADPSRIVFSGVGKQTWEMRDALQAGV 132
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + ++ G + V LR+NPDVD + HPY++TG K +KFGI +
Sbjct: 133 KCFNVESEDELHRLSDVAQHMGVRAPVSLRVNPDVDARTHPYISTGLKENKFGI---AID 189
Query: 244 WFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
LDA + + L++VG CH+GS +T + + DA +++ IDK+ G + +L++
Sbjct: 190 AALDAYRTAQSLRGLEIVGVDCHIGSQLTDISPYFDALEKLLDLIDKLDQAGIRIAHLDL 249
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTG 358
GGGLGI Y T P PR+L+D V + + +R +L +++EPGRSL+ N L+ V
Sbjct: 250 GGGLGIRY--TDETPPSPRDLLDRVFKRLAARGQHHLQVVLEPGRSLVGNAGVLLTTVQY 307
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
+K +NF ++D +M +L+RP+LYDA+ ++ + P D ++++D+VGPVCESAD+L
Sbjct: 308 LKHTPARNFAIVDAAMNDLLRPALYDAFHGVQPLHPRAGD--VAEYDIVGPVCESADWLA 365
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
K+R L +G L V AGAY M+MAS YN + RP E V
Sbjct: 366 KKRPLAI-RQGDVLAVESAGAYGMTMASNYNSRGRPAEVMV 405
>gi|383785345|ref|YP_005469915.1| diaminopimelate decarboxylase [Leptospirillum ferrooxidans C2-3]
gi|383084258|dbj|BAM07785.1| diaminopimelate decarboxylase [Leptospirillum ferrooxidans C2-3]
Length = 414
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 233/391 (59%), Gaps = 11/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY E V V+ ++ V P Y+YS+ I+ + +Y++A ++I YA+KAN N
Sbjct: 8 NGELYVESVPVEKIIREV-GSPAYIYSERAISDSYASYQEAFSSHKTVIAYAMKANGNLS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL L K G GA +VSG EL A++AG P + +F G GK +++ A + G+ + NV+S
Sbjct: 67 ILSLLGKKGSGADVVSGGELFRAMKAGIPPDRIVFAGVGKTEQEMKEALEAGILMFNVES 126
Query: 191 EFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDA 248
+L+ + VASR+ G NV LR+NPDVDPQ HPY++TG K SKFG+ E L +L A
Sbjct: 127 SMELDTLSKVASRM-GVTANVALRVNPDVDPQTHPYISTGLKKSKFGVPVKEALAEYLRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
K P ++L G H H+GS +T++ FRD+ M+ + + ++ +G + +L++GGGLGI
Sbjct: 186 SKL-PG-IRLTGIHQHIGSQLTQIAPFRDSFTRMIAFSEALKEKGIGISWLDVGGGLGIR 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y +P P ++ + V + +I+EPGRS++ N+ LV V VK K F
Sbjct: 244 Y--DDEKVPTPGDISREILSRVKDPSQGIILEPGRSIVGNSGILVTQVLYVKKTEVKTFY 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ D M +LIRPSLY A+ + + ++ K D+VGPVCE+ DFL ++R+LP
Sbjct: 302 IGDAGMNDLIRPSLYGAFHDLWPIR--VREGASVKADLVGPVCETGDFLVQDRDLPPIKA 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G + V AGAY +MAS YN + RPPE V
Sbjct: 360 GDLVSVMSAGAYGFAMASNYNARPRPPEILV 390
>gi|417860792|ref|ZP_12505847.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens F2]
gi|338821196|gb|EGP55165.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens F2]
Length = 422
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 231/399 (57%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VSG ELR AL AG ++ +F+G GK + ++ A G++ N++S
Sbjct: 67 VLKTLAKLGAGIDVVSGGELRRALAAGVPASRIMFSGVGKTVAEMDYALDAGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEVLNLRAVKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERARGVYAHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT++ F DA L+ ++ +R G + +++IGGGLGI Y
Sbjct: 187 TLPG-IEVTGIDMHIGSQITELQPFEDAFRLLRELVEALRTDGHTISHVDIGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + S N +I EPGR ++ N LV V VK G K F+++
Sbjct: 246 EDNNPPPLPDAYAHIVKNELRSLNCKIITEPGRLIVGNAGILVTEVIYVKDGGEKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+AY I V +DA K D+VGPVCE+ D+L +RE+ P+ G
Sbjct: 306 DGAMNDLIRPTLYEAYHGIRPVVQPAEDAPRIKADIVGPVCETGDYLALDREMAAPEPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ V AGAY A TYN ++ PE V+ +I P
Sbjct: 366 LIAVSSAGAYGAVQAGTYNSRLLVPEVLVKGDKFHVIRP 404
>gi|150397736|ref|YP_001328203.1| diaminopimelate decarboxylase [Sinorhizobium medicae WSM419]
gi|150029251|gb|ABR61368.1| diaminopimelate decarboxylase [Sinorhizobium medicae WSM419]
Length = 422
Score = 271 bits (692), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 230/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + ++ V PFY YS + R+ + + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPLTEIARAV-GTPFYCYSTATLERHYKVFSQAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG P++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGLDVVSEGELRRALAAGIPPSRIMFSGVGKTAREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + AGK+ V RINPDVD + H ++TG K +KFGI E+ + +V
Sbjct: 127 EPELEVLNQRGVRAGKRAPVSFRINPDVDARTHAKISTGKKENKFGISWERAR----SVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ +D +R+ G ++++++GGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIEHVDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADVVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVVYVKDGGDKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVRISAASAPRIKADVVGPVCETGDYLALDREMAMPR 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY A TYN ++ PE V+ +I P
Sbjct: 363 AGDLLAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRP 404
>gi|402851014|ref|ZP_10899196.1| Diaminopimelate decarboxylase [Rhodovulum sp. PH10]
gi|402498727|gb|EJW10457.1| Diaminopimelate decarboxylase [Rhodovulum sp. PH10]
Length = 421
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 219/396 (55%), Gaps = 4/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS + DG ++ E V + ++ ETV PFY YS +TR+ + A + ++I YA+
Sbjct: 2 HHFSYR-DGVMHAEAVNLANLAETV-GTPFYCYSTATLTRHYRVFTDAFADVPALICYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ L KLG GA +VSG EL+ AL AG P + +F+G GK +L LA G+
Sbjct: 60 KANSNQAVIRTLAKLGAGADVVSGGELQRALAAGIPPERIMFSGVGKTAAELSLAIDTGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VNV+SE +LE + + G++ + LR+NPDVD H +ATG +KFGI K +
Sbjct: 120 LCVNVESEPELELLSSIAAAKGREAPISLRVNPDVDAGTHAKIATGKAENKFGIPLAKAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P +K+ G H+GS IT + F A L+ +++ +R G +D+++ GG
Sbjct: 180 GVYARAAALPG-VKVTGVDMHIGSQITALAPFSAAFALLADFVRTLREDGHTIDHIDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y+ P P V+ + L+ EPGR L+ N LV V VK
Sbjct: 239 GLGIPYHDGNEPPPHPDAYAGVVKAAAKTLGCRLMFEPGRLLVGNAGILVTRVLYVKRGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D +M +L+RP+LY+A+ ++ V P D DVVGPVCES DFL +RE+
Sbjct: 299 AKTFVIVDAAMNDLVRPTLYEAFHALQPVVEPPLDGPRLTADVVGPVCESGDFLALDREM 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P P G L V AGAY A TYN + PE V
Sbjct: 359 PEPKAGDLLAVMSAGAYGAVQAGTYNTRPLVPEVLV 394
>gi|407976831|ref|ZP_11157727.1| diaminopimelate decarboxylase [Nitratireductor indicus C115]
gi|407427730|gb|EKF40418.1| diaminopimelate decarboxylase [Nitratireductor indicus C115]
Length = 423
Score = 270 bits (691), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 221/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V + + VE PFY YS +TR+ + +A +GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVPVPVIAQAVET-PFYCYSTATLTRHYRVFSEAFDGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG K +F+G GK ++ A Q G+ NV+S
Sbjct: 67 VLKTLARLGAGMDVVSEGELRRALAAGVPADKVLFSGVGKTAREMDFALQAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +LE + + GK NV LRINPDVD Q H ++TG +KFGI + +
Sbjct: 127 KPELELLSARATALGKTANVSLRINPDVDAQTHKKISTGKAENKFGIGWQDARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P LK+ G H+GS IT + F A L+ + +RA G ++++++GGGLG+ Y
Sbjct: 187 ELPG-LKVTGIDMHIGSQITDLKPFDAAFALLTELTETLRADGHAIEHVDLGGGLGVPYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
G P P + VR+ V L +++EPGR + AN LV+ V K KNF+++
Sbjct: 246 EDGDQPPLPAAYAEVVRKHVSRLGLKVMLEPGRLIAANAGILVSEVIFRKDGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V A A K DVVGPVCE+ D+L +RELP G
Sbjct: 306 DAAMNDLIRPTLYEAFHSIRPVRQAEAGAPRFKADVVGPVCETGDYLALDRELPDLKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY ASTYN + PE V
Sbjct: 366 LIAIGSAGAYGAVQASTYNTRPLVPEVLV 394
>gi|298528736|ref|ZP_07016140.1| diaminopimelate decarboxylase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298512388|gb|EFI36290.1| diaminopimelate decarboxylase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 415
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/394 (37%), Positives = 230/394 (58%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + +G LY ED+ ++++++ + P Y+YS + R+ EA+ A EG + +++KA
Sbjct: 3 FFEYRNGELYAEDISIKELVQEFDT-PLYVYSAKTLRRHYEAFDSAFEGTRHMTCFSVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
N+N +L+ L ++G G +VSG EL AL+AG DP K +++G GK ++ A + +
Sbjct: 62 NSNICVLKLLGQMGAGVDIVSGGELFRALKAGIDPQKIVYSGVGKREHEIREALLSNILM 121
Query: 187 -NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +LE I + + + LRINPDVDPQ HPY++TG K +KFG+ E+ W
Sbjct: 122 FNVESRQELERINQVASEMEVQARISLRINPDVDPQTHPYISTGLKKNKFGLELEQ-AWE 180
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ + ++ VG CH+GS +T V+ F +A + ++ +++ G ++ YL++GGGL
Sbjct: 181 SYKLARELSNIEPVGIDCHIGSQLTSVEPFLEALERIKSFYGRLQELGLDIKYLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y P P V+E + +L LI+EPGR + N +V V K +K
Sbjct: 241 GITYDQEEP--PHPAEFGRAVKESLKDTDLTLILEPGRVIAGNAGIMVTRVLYTKGTPSK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF+++D +M +L+RPSLY +Y IE V + + DVVGP+CE+ DFL + RELP
Sbjct: 299 NFVIVDAAMNDLMRPSLYGSYHRIEPVQ--EKSGRLYTADVVGPICETGDFLAQGRELPR 356
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++ L VH AGAY +MAS YN + RP E V
Sbjct: 357 LEQDDLLAVHSAGAYGFTMASQYNSRPRPAEVLV 390
>gi|444921250|ref|ZP_21241087.1| Diaminopimelate decarboxylase [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444507609|gb|ELV07784.1| Diaminopimelate decarboxylase [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 413
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 228/385 (59%), Gaps = 8/385 (2%)
Query: 76 YCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEH 135
+ E V ++D+++T P Y+YSK IT + Y+ A +I YA+KAN+N ++
Sbjct: 7 HIEQVAIEDLVKTY-GTPLYVYSKASITEAFKRYQDAFGARKHLICYAVKANSNLSVIRL 65
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDL 194
L LG G +VS EL L+AG DPTK IF+G GK EDL A + G+ NV+SE +L
Sbjct: 66 LADLGAGFDIVSRGELLRVLKAGGDPTKVIFSGVGKTREDLRFALETGIHCFNVESEAEL 125
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
+ + G + R+NPDVD + HPY++TG + +KFGI ++ +A P+
Sbjct: 126 YRLNEEAGKLGLMAPISFRVNPDVDAKTHPYISTGLRENKFGIPYDQAVRLYEAAHQLPH 185
Query: 255 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314
+ + G CH+GS +T++ + DA M+ ID ++ +G E+++ ++GGGLGIDY G
Sbjct: 186 -IAIKGIDCHIGSQLTELSPYCDAVDRMLKLIDALKEKGIELEHFDMGGGLGIDY--QGE 242
Query: 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM 374
L P+ L+D + E + R+L + +EPGRS++ ++ L+ V K N K+F V+D +M
Sbjct: 243 TLITPQTLVDMIYEKLGDRDLMMTMEPGRSIVGDSGYLLTEVILTKENEGKHFAVVDAAM 302
Query: 375 AELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVV 434
+LIRP+LY+++ IE + DA + +D+VGPVCE+ DFLGK R+L G LVV
Sbjct: 303 NDLIRPALYESWMRIE--TTQASDAPVHNYDIVGPVCETGDFLGKNRDLALS-AGDILVV 359
Query: 435 HDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY M+S YN + R E +
Sbjct: 360 KQAGAYGFVMSSNYNTRGRAAEILI 384
>gi|392375364|ref|YP_003207197.1| diaminopimelate decarboxylase [Candidatus Methylomirabilis oxyfera]
gi|258593057|emb|CBE69368.1| diaminopimelate decarboxylase [Candidatus Methylomirabilis oxyfera]
Length = 418
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 226/398 (56%), Gaps = 7/398 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + D L CE++ ++ + V PFYLYS +T + + + QA + ++ +AI
Sbjct: 2 HHFQYRGD-LLMCEELPIERIAAEV-GTPFYLYSHATLTHHFQTFDQAFADIPHLVCFAI 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N L+ LG GA +VSG EL A+RAG P++ +F G GK E++ A + +
Sbjct: 60 KANSNGATLKLFADLGSGADVVSGGELYRAMRAGIPPSRIVFAGVGKTREEMGFALKSDI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+S +L + + G K V LRINPDVDP+ HPY++TG K SKFGI + L
Sbjct: 120 LMFNVESPQELRLLNDVAGAMGTKARVALRINPDVDPKTHPYISTGLKKSKFGI-DISLA 178
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
V + +VG H H+GS IT++ F D+ V + I ++R GF + YL++GG
Sbjct: 179 MEEYRVAKELRHIDVVGVHQHIGSQITEIAPFVDSLVKVAGLIAELRQHGFAIQYLDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P PR + + ++ +++EPGR ++ N LV V K
Sbjct: 239 GLGITYKDEDP--PVPRVFAEAMIAVIKDLGCTIVLEPGRVIVGNAGVLVTKVLYDKRTP 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+FIV+D M +L+RPSLY ++ I L + + E DVVGPVCES DFL K+R +
Sbjct: 297 AKHFIVVDAGMNDLVRPSLYGSFHSI-LPARRQKGREEVMADVVGPVCESGDFLAKDRSM 355
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
P P+ G LVV AGAY +M+S+YN + R PE V+
Sbjct: 356 PAPEPGELLVVMSAGAYGYTMSSSYNSRPRLPEILVKG 393
>gi|311109535|ref|YP_003982388.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans A8]
gi|310764224|gb|ADP19673.1| diaminopimelate decarboxylase 2 [Achromobacter xylosoxidans A8]
Length = 430
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 239/400 (59%), Gaps = 13/400 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + + LY EDV + + E + P Y+YS+ + E+Y+ A+ ++ Y +
Sbjct: 14 HPYFQFRNNVLYAEDVPLDHLAEKLGT-PLYVYSRAALKAAWESYRNAVGQHPVLVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQE 182
KAN+N +L+ +LG G +VSG EL+ AL AG DP++ +F+G GK ++ LAAQ
Sbjct: 73 KANSNLAVLKEFARLGAGFDIVSGGELKRALAAGADPSRIVFSGVGKQAWEMRAALAAQV 132
Query: 183 GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
F NV+SE +L + + G + V LR+NPDVD Q HPY++TG K +KFGI E
Sbjct: 133 KCF-NVESEAELRRLSEVAHGMGLRAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIESA 191
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ ++ P L +VG CH+GS +T + + DA +++ I+K+ G + +L++G
Sbjct: 192 LDVYRSAQSLPG-LDIVGVDCHIGSQLTDISPYFDALEKLLDLIEKLDQAGIRIAHLDLG 250
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGV 359
GGLGI Y T + P P+ L+D V E + +R +L L++EPGRSL+ N L+ V +
Sbjct: 251 GGLGIRY--TDEIPPSPQVLLDRVFERLNARGFGHLQLVLEPGRSLVGNAGVLLTRVQYL 308
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K + +NF ++D +M +L+RP+LY+A+ + V P DA + +D+VGPVCESAD+L K
Sbjct: 309 KHSEARNFAIVDAAMNDLLRPALYEAFHGVRPVHPRAGDATL--YDIVGPVCESADWLAK 366
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+R+L ++G L V GAY M+MAS YN + R E V
Sbjct: 367 QRKLAI-EQGDLLAVESTGAYSMAMASNYNARPRAAEAMV 405
>gi|408373187|ref|ZP_11170885.1| diaminopimelate decarboxylase [Alcanivorax hongdengensis A-11-3]
gi|407767025|gb|EKF75464.1| diaminopimelate decarboxylase [Alcanivorax hongdengensis A-11-3]
Length = 413
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 231/389 (59%), Gaps = 9/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E++ V+ + P YLYS+ + R+ +A+ +A + YA+KAN+N
Sbjct: 8 DGELFAEELPVEQLAARF-GTPLYLYSRATLERHFQAFDEAFGDHPHQVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L + G G +VSG EL LRAG DP K +F+G GK E++ A + G+ NV+S
Sbjct: 67 VLNVLARCGAGFDIVSGGELERVLRAGGDPDKIVFSGVGKTAEEMAAALKAGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + + +R+NPDVD Q HPY++TG K++KFG+ +K
Sbjct: 127 AAELELLNLVAGELDLQAPIAIRVNPDVDAQTHPYISTGLKDNKFGVDIDKAPALYQRAH 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ ++++G CH+GS +TK+ F DA ++ +D+++A G E+ +L++GGGLG+ Y
Sbjct: 187 ELPH-IRILGIDCHIGSQLTKLSPFEDALERVLKLLDQLQAHGIEIQHLDLGGGLGVTYD 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + + + + + +L + IEPGR++ AN V V +K KNF ++
Sbjct: 246 QE--TPPAPADYVQALLKHI-PGDLPVHIEPGRAIAANAGIFVTQVLFLKPTEHKNFAIV 302
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRPSLY A+Q+I V P DA+ +D+VGPVCE+ DFLGKER L + D G
Sbjct: 303 DGAMNDLIRPSLYSAWQNI--VPVKPHDADCRTWDIVGPVCETGDFLGKERAL-SLDTGD 359
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +MAS YN + RP E V
Sbjct: 360 LLAVRSAGAYGFAMASNYNSRNRPAEIMV 388
>gi|163859235|ref|YP_001633533.1| hypothetical protein Bpet4914 [Bordetella petrii DSM 12804]
gi|163262963|emb|CAP45266.1| lysA [Bordetella petrii]
Length = 430
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 234/392 (59%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + D + + P Y+YS+ + + Y A+ ++ Y +KAN+N
Sbjct: 21 NGILHAEGVAL-DALASQLGTPLYVYSRAALAQAWRTYSDAIGTRPVLVCYGMKANSNLA 79
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ +LG G +VSG EL+ L AG +P K +F+G GK ++ A + GV NV+S
Sbjct: 80 VLKEFARLGAGFDIVSGGELKRVLAAGGNPAKVVFSGVGKQAWEMRAALEAGVKCFNVES 139
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ + ++ G++ V LR+NPDVD Q HPY++TG K +KFGI E
Sbjct: 140 QAELQCLSDVAQSMGQRARVSLRVNPDVDAQTHPYISTGLKENKFGIAIESALDAYRTAA 199
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++VG CH+GS +T + + DA +++ I+++ A G + +L++GGGLGI Y
Sbjct: 200 ALPG-LEIVGVDCHIGSQLTDISPYFDALEKLLDLIEQLDAAGIAIQHLDLGGGLGIRY- 257
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T + P P+ L+D V E + +R +L+L++EPGRSL+ N L+ V +K +NF
Sbjct: 258 -TDEIPPSPKALLDQVFERLQARGMAHLHLVLEPGRSLVGNAGVLLTTVQYLKHAQARNF 316
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LYDAY ++ V AP+D ++D+VGPVCESAD+L ++R+L
Sbjct: 317 AIVDAAMNDLLRPALYDAYHGVQPV--APRDGAAIEYDIVGPVCESADWLARQRKLAL-Q 373
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M MAS YN + R E V
Sbjct: 374 AGDVLALESAGAYAMVMASNYNTRARAAEVMV 405
>gi|302035867|ref|YP_003796189.1| diaminopimelate decarboxylase [Candidatus Nitrospira defluvii]
gi|300603931|emb|CBK40263.1| Diaminopimelate decarboxylase [Candidatus Nitrospira defluvii]
Length = 420
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/389 (39%), Positives = 222/389 (57%), Gaps = 5/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LYCEDV + + + V P Y+YS + R+ Y A + + I+ +A+KAN+N
Sbjct: 8 EGELYCEDVPLSRIAKEV-GTPCYVYSHHTLVRHFRVYDSAFQNIPHIVAFAMKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L + K G G +VSG EL AL+AG P K +F G GK E++ A + + + NV+S
Sbjct: 67 VLRMMAKEGSGVDIVSGGELFRALKAGVPPGKIVFAGVGKKPEEIRDALKADILMFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ I + G K V LRINPD+DP+ HPY++TG K SKFGI ++ A
Sbjct: 127 SAELQAINDVAASMGVKARVALRINPDIDPKTHPYISTGLKKSKFGIAADRAIEEFKAAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A + +++VG H H+GS +T+V F ++ ++ + + QG + YLNIGGGLGI Y
Sbjct: 187 AF-SHIEVVGLHAHIGSQLTQVAPFVESLKKVLTMVQTLAEQGIPIRYLNIGGGLGITY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P+P++L + LV LI+EPGR ++ N L+ V K TK F+++
Sbjct: 245 -SDETPPEPKDLAAAIFPLVRDLKCVLIMEPGRVIVGNAGVLLTKVLYTKDGETKRFLIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRPSLYDA+ I+ V DVVGPVCES DFL K+R +P + G
Sbjct: 304 DAAMNDLIRPSLYDAHHDIKPVYENVARGAKETVDVVGPVCESGDFLAKDRAMPEMNAGD 363
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY M+S YN + R PE V
Sbjct: 364 LMAVMSAGAYGFVMSSNYNSRPRVPEVLV 392
>gi|430759416|ref|YP_007215273.1| Diaminopimelate decarboxylase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430009040|gb|AGA31792.1| Diaminopimelate decarboxylase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 417
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/390 (39%), Positives = 234/390 (60%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+CE V + +V E V P Y+YS+ +TR+ A+ ALEG+ + +A+KAN++
Sbjct: 8 DGVLHCELVPLTEVAEAVGT-PAYVYSRATLTRHYHAFANALEGIPHQVCFAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL LRAG +P K +F+G GK ++ A Q G+ NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLRAGGEPGKVVFSGVGKTAGEMRRALQVGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-WFLDAV 249
+LE + + G + + +R+NPDVD + HPY+ATG + +KFG+ +L+A
Sbjct: 127 GPELELLNAVAGDMGLRAPIAIRVNPDVDAETHPYIATGLRENKFGVDIAAAHALYLEAT 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ E++ VG H+GS +T++ F DA ++ D + G + ++++GGGLG+ Y
Sbjct: 187 RLGHLEIRGVG--FHIGSQLTRLTPFTDALRRVLALADDLERDGIGLAHIDVGGGLGVRY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P+P + +REL+ RN +++EPGR++ AN + V +K K+F V
Sbjct: 245 RDE--TPPEPADYAAALRELLADRNWPVLLEPGRAIAANAGVFLTRVELLKHTAHKDFAV 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q E+V +P++ E ++DVVGPVCE+ DFLG+EREL G
Sbjct: 303 VDGAMNDLIRPALYGAWQ--EIVPVSPRNGESRRYDVVGPVCETGDFLGRERELVLAP-G 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY MAS YN + RPPE V
Sbjct: 360 DLMAVRSAGAYGYVMASNYNSRPRPPEVMV 389
>gi|303248021|ref|ZP_07334287.1| diaminopimelate decarboxylase [Desulfovibrio fructosovorans JJ]
gi|302490578|gb|EFL50483.1| diaminopimelate decarboxylase [Desulfovibrio fructosovorans JJ]
Length = 412
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 230/404 (56%), Gaps = 24/404 (5%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + G LY EDV V ++ P Y+YS + R+ A+ A +GL + +++
Sbjct: 2 HHFQYRG-GELYAEDVPVSTLVAAY-GTPLYIYSAATLRRHFAAFDSAFDGLPHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +G G +VSG EL AL AG DP K +++G GK ++ A G+
Sbjct: 60 KANSNLAVLRTLGAMGAGVDIVSGGELYRALAAGIDPAKIVYSGVGKRGNEIEEALNAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+ NV+S +LE I SRIA GK NV LRINP+VDP+ HPY++TG K +KFG+ E
Sbjct: 120 LMFNVESMGELERI---SRIAARLGKNANVSLRINPNVDPKTHPYISTGLKKNKFGLDME 176
Query: 241 KLQWFLDAVKAHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE 295
++ A+ ++L VG CH+GS +T ++ F +A ++ + +K+ A G
Sbjct: 177 T------SLAAYARAMELPGVTPVGIDCHIGSQLTSIEPFLEALDKILIFREKLVAMGIS 230
Query: 296 VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNH 355
YL++GGGLGI Y P PR + + + L L++EPGR ++ N LV
Sbjct: 231 PRYLDLGGGLGIQYNEEEP--PHPREFGQALTKALGDLPLTLVLEPGRVIVGNAGILVTE 288
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
V K +K+F+++D +M +LIRPSLYD+Y I V PA +D DVVGP+CES D
Sbjct: 289 VVYTKKTPSKDFVIVDAAMNDLIRPSLYDSYHAISEVRPAERDT--LNVDVVGPICESGD 346
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
FL ++RELP G L V+ AGAY +M+S YN + R E V
Sbjct: 347 FLARDRELPAVAPGEYLAVYSAGAYGFTMSSNYNSRPRAAEVLV 390
>gi|452126819|ref|ZP_21939402.1| diaminopimelate decarboxylase [Bordetella holmesii F627]
gi|452130192|ref|ZP_21942765.1| diaminopimelate decarboxylase [Bordetella holmesii H558]
gi|451921914|gb|EMD72059.1| diaminopimelate decarboxylase [Bordetella holmesii F627]
gi|451923052|gb|EMD73196.1| diaminopimelate decarboxylase [Bordetella holmesii H558]
Length = 429
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/392 (39%), Positives = 233/392 (59%), Gaps = 13/392 (3%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + D++ P Y+YS+ + + Y+QA+ ++ Y +KAN+N +
Sbjct: 21 GVLHAEGVAL-DILAAKLGTPLYVYSRAALHAAYDNYRQAIGERPVLVCYGMKANSNLAV 79
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSE 191
L+ +LG G +VSG EL+ L G DP K +F+G GK ++ A GV NV+S
Sbjct: 80 LKEFARLGAGFDIVSGGELKRVLAVGADPAKVVFSGVGKQEWEMRDALAAGVKCFNVEST 139
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+L+ + ++ G+ V LR+NPDVD Q HPY++TG K +KFGI E LQ + A
Sbjct: 140 AELQRLSKVAQAEGRIARVSLRVNPDVDAQTHPYISTGLKENKFGIAIEEALQAYQTA-- 197
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A L++VG CH+GS +T V + DA +++ ID+I G +++L++GGGLGI Y
Sbjct: 198 ASLPGLQIVGVDCHIGSQLTDVSPYFDALDKLLDLIDRIGGHGITIEHLDLGGGLGIRY- 256
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T + P P+ L+D V + + +R +L++++EPGRSL+ N L+ V +K N +NF
Sbjct: 257 -TDEIPPSPKTLLDEVFKRLQARGHGHLHVVLEPGRSLVGNAGVLLTTVQFLKHNEARNF 315
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY AY I+ V P+ AE +DVVGPVCES D+LGKER L +
Sbjct: 316 AIVDAAMNDLLRPTLYQAYHGIQAV--VPRQAEPQCYDVVGPVCESGDWLGKERNLAI-E 372
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M MAS YN + R E V
Sbjct: 373 QDDVLAVESAGAYGMVMASNYNTRPRAAEVMV 404
>gi|127511256|ref|YP_001092453.1| diaminopimelate decarboxylase [Shewanella loihica PV-4]
gi|126636551|gb|ABO22194.1| diaminopimelate decarboxylase [Shewanella loihica PV-4]
Length = 414
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 223/386 (57%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V + ET P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LYAEQCTVASLAETY-GTPLYVYSRATLERHWHAFDNAVADHPHMICYAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL L AG + +K +F+G GK + ++ +A + G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVLEAGGEASKVVFSGVGKTVAEMEMALEAGIYCFNVESAAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + + GK V LR+NPDVD HPY++TG K +KFGI E+ + P
Sbjct: 130 LEQLNLVALRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMEEAEAIFLRANELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L + GA CH+GS +T++ F DA M+ ID++ QG ++ +L++GGGLG+ Y G
Sbjct: 190 G-LAVKGADCHIGSQLTELQPFLDAMDRMLALIDRLAEQGVKIAHLDVGGGLGVTY--DG 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P+P + + R+L LI EPGR++ AN V V +K N KNF ++DG+
Sbjct: 247 EQPPEPSAYASALLGKLAGRDLKLIFEPGRAIAANAGIFVTQVLYLKENAEKNFALVDGA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPSLY A+Q I V P P E ++DVVGPVCE+ DFLGK+R L L
Sbjct: 307 MNDLIRPSLYSAWQKIIPVVPRP--GETRQYDVVGPVCETGDFLGKDRALNIRANDL-LA 363
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 364 VRSSGAYGFTMASNYNSRPRAAEVMV 389
>gi|422348992|ref|ZP_16429884.1| diaminopimelate decarboxylase [Sutterella wadsworthensis
2_1_59BFAA]
gi|404658752|gb|EKB31616.1| diaminopimelate decarboxylase [Sutterella wadsworthensis
2_1_59BFAA]
Length = 426
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 239/399 (59%), Gaps = 12/399 (3%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
CF ++ DG L+CE V + ++ +E+ Y+YS+ +I RN AY++AL + I YA+K
Sbjct: 9 CFHRE-DGVLFCEGVSLLELSRRLEQTT-YVYSRARIERNYLAYEEALADVPHAICYAMK 66
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV- 184
AN+ +L+ L +LG G VSG E+ ALRAGF P K +++G GK ++ A + G+
Sbjct: 67 ANSTAGVLQVLARLGAGVDTVSGGEIARALRAGFRPEKIVYSGVGKTAREITFALKAGIG 126
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ- 243
N++SE +LE I + G + + +R NPDVDP+ HPY++TG KN+KFGI ++
Sbjct: 127 CFNIESEPELERINRIATELGVRAPISIRCNPDVDPKTHPYISTGLKNNKFGIAIADVED 186
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+L A E+K G H+GS IT++ + D+ +++ + +R +G + +L++GG
Sbjct: 187 IYLRAANMPGIEVK--GIDAHIGSQITEIQPYLDSVHRLLDTMSALRDKGLVLHHLDMGG 244
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVK 360
GLGI Y P P+ L+ VR ++ R L++EPGRS++ + ++ V +K
Sbjct: 245 GLGIQYRPEDQP-PTPQTLLRPVRRMMEERGFGDAVLMVEPGRSIVGDAGLMLTQVEYIK 303
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
+ T+NF ++DG+M +LIRP+LY A+ I V DA DVVGPVCES+DFLG+
Sbjct: 304 QSETRNFCIVDGAMTDLIRPALYSAWMDIVPVVER-HDAAPLVMDVVGPVCESSDFLGRA 362
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
REL + G + V DAGAY SMAS YN +M P E +
Sbjct: 363 RELAVRE-GDWIAVCDAGAYGASMASRYNSRMLPMEVMI 400
>gi|418400136|ref|ZP_12973679.1| diaminopimelate decarboxylase [Sinorhizobium meliloti CCNWSX0020]
gi|359505812|gb|EHK78331.1| diaminopimelate decarboxylase [Sinorhizobium meliloti CCNWSX0020]
Length = 422
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 229/402 (56%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + ++ V PFY YS + R+ + + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPLTEIARAV-GTPFYCYSTATLERHYKVFSQAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGLDVVSEGELRRALAAGIPASRIMFSGVGKTAREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AG++ V RINPDVD + H ++TG K +KFGI E+ + V
Sbjct: 127 EPELEVLNQRAVRAGRRAPVSFRINPDVDARTHAKISTGKKENKFGISWERAR----GVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH EL ++ G H+GS IT++ F DA L+ +D +R+ G +++++IGGGLGI
Sbjct: 183 AHAAELPGIEVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIEHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVVYVKDGGDKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVKISAASAPRIKADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRP 404
>gi|222054228|ref|YP_002536590.1| diaminopimelate decarboxylase [Geobacter daltonii FRC-32]
gi|221563517|gb|ACM19489.1| diaminopimelate decarboxylase [Geobacter daltonii FRC-32]
Length = 417
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 231/400 (57%), Gaps = 12/400 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K LY EDV ++D++ + PFY+YS+ + R+ A +A ++ I Y++
Sbjct: 2 HHFQYKGHD-LYAEDVAIKDIVAKI-GSPFYVYSQATLERHFRAMDEAFATVSHTICYSM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++++ LG G +VSG EL AL+AG P+K +++G GK +++ A G+
Sbjct: 60 KANSNLAVVKNFVNLGGGVDIVSGGELYRALKAGASPSKVVYSGVGKKDDEIEYALNTGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +L I + G+K + +R+NPDVDPQ HPY+ TG KN+KFGI ++
Sbjct: 120 LMFNVESEQELTRISEIANRMGRKAGIAIRVNPDVDPQTHPYITTGLKNAKFGITIDRAI 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
K P ++++G CH+GS +TKV F DA + N I K++ G + Y ++GG
Sbjct: 180 EEYRRAKGLPG-IEILGIDCHIGSQLTKVSPFVDAIKKLKNVIGKLKEMGISLTYFDLGG 238
Query: 304 GLGIDYYHTGAVLPKP--RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GLGI Y LP +I ++L ++LI EPGR+L+ N LV +K
Sbjct: 239 GLGIQYNDEAPPLPADYGSEIIKETKDL----GMHLIFEPGRNLVGNAGILVAKTLYIKH 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNFIVID M +L RP+LY ++ I+ V QD I+ D+VGP+CES DFL K+R
Sbjct: 295 RDEKNFIVIDAGMNDLARPALYGSFHGIKPVVKN-QDGTITA-DIVGPICESGDFLAKDR 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
E+P +G + AGAY +M+S+YN + R E V+
Sbjct: 353 EVPMFKQGDLMAFMSAGAYGFAMSSSYNSRPRVAEVMVKG 392
>gi|359785714|ref|ZP_09288861.1| diaminopimelate decarboxylase [Halomonas sp. GFAJ-1]
gi|359296947|gb|EHK61188.1| diaminopimelate decarboxylase [Halomonas sp. GFAJ-1]
Length = 423
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 162/396 (40%), Positives = 232/396 (58%), Gaps = 17/396 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + + + + P Y+YSK + R+ AY +AL G +I YA+KAN+N
Sbjct: 8 DGVLYAEDVPLTQLADAL-GTPCYVYSKATLKRHFRAYTEALGGHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L LG G +VS EL L+AG DP K +F+G K +++ A + G+ NV+S
Sbjct: 67 VLGLLATLGAGFDIVSVGELERVLKAGGDPAKVVFSGVAKQPQEMARALEVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + GK V LR+NPDVD HPY++TG K++KFGI ++
Sbjct: 127 RSELERLNRVAGELGKIAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEALDVYQLAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN L++ G CH+GS +T+ F DA ++ ++++R +G E+D+L++GGGLG+ Y
Sbjct: 187 SLPN-LRVAGLDCHIGSQLTETAPFLDALERLLMLMERLRERGIEIDHLDLGGGLGVPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELV--LSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
P+P D +L+ LSR L L+ EPGRS+ AN ++ V +K
Sbjct: 246 DE--TPPQP---FDYASQLLARLSRWKGGETLTLLFEPGRSIAANAGVMLTRVEFLKPGE 300
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNF ++D +M +LIRP+LY A+Q I V + A + +DVVGPVCE+ DFLGKEREL
Sbjct: 301 TKNFAIVDAAMNDLIRPALYQAWQAIVAVDTRHERA-TATYDVVGPVCETGDFLGKEREL 359
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY MAS YN + RPPE V
Sbjct: 360 AITE-GDLLAVRSAGAYGFVMASNYNSRPRPPEVMV 394
>gi|197120414|ref|YP_002140841.1| diaminopimelate decarboxylase [Geobacter bemidjiensis Bem]
gi|197089774|gb|ACH41045.1| diaminopimelate decarboxylase [Geobacter bemidjiensis Bem]
Length = 417
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 227/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + L+ EDV ++D++ V P Y+YSK + R+ +A A I Y++
Sbjct: 2 HHFQYKGEE-LFAEDVAIKDIVAAV-GSPVYIYSKATLERHYKAMDDAFAQAPHTICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ LG G +VSG EL AL AG DP K +++G GK +++ A + G+
Sbjct: 60 KANSNLAVLKTFINLGGGVDIVSGGELYRALAAGVDPKKVVYSGVGKRDDEIAYALESGI 119
Query: 185 FV-NVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++SE +L+ I +A RI GKK + +R+NPDVDPQ HPY+ TG K +KFGI E+
Sbjct: 120 LMFNIESEQELDRISDIAGRI-GKKAGIAIRVNPDVDPQTHPYITTGLKKAKFGINIERA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
K N ++++G CH+GS +TKV F DA + +D +R G ++ YL++G
Sbjct: 179 LEQYQRAKGLAN-IEILGIDCHIGSQLTKVSPFVDAIKKLKRLLDGVRGMGIDIKYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P + +++E L+LI EPGR+L+ N LV K
Sbjct: 238 GGLGIQYDDEAP--PLPADYGSSIQEETKDLGLHLIFEPGRNLVGNAGILVGKCLYTKKG 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF+++D M +L RPSLY ++ + V QD I D+VGP+CES DFL KERE
Sbjct: 296 EEKNFVIVDAGMNDLARPSLYGSFHGVRPVF-RNQDGVIEG-DIVGPICESGDFLVKERE 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+P +G + AGAY +M+S YN + R E V
Sbjct: 354 IPNFRQGDLIAFMSAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|15891339|ref|NP_357011.1| diaminopimelate decarboxylase [Agrobacterium fabrum str. C58]
gi|335037843|ref|ZP_08531144.1| diaminopimelate decarboxylase [Agrobacterium sp. ATCC 31749]
gi|15159724|gb|AAK89796.1| diaminopimelate decarboxylase [Agrobacterium fabrum str. C58]
gi|333790741|gb|EGL62137.1| diaminopimelate decarboxylase [Agrobacterium sp. ATCC 31749]
Length = 422
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 231/394 (58%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VSG ELR AL AG ++ +F+G GK + ++ A + G++ N++S
Sbjct: 67 VLKTLAKLGAGIDVVSGGELRRALAAGVPASRIMFSGVGKTVAEMDYALEAGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRAVKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ ++ +R G + +++IGGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVEVLRTDGHAISHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + S N ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYRDDNNPPPLPDAYAHIVKNELKSLNCKIVTEPGRLIVGNAGILVTEVIYVKDGGDKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V ++A K D+VGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHGIRPVVQPSENAPRIKADIVGPVCETGDYLALDREMAAPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|332524336|ref|ZP_08400557.1| diaminopimelate decarboxylase [Rubrivivax benzoatilyticus JA2]
gi|332107666|gb|EGJ08890.1| diaminopimelate decarboxylase [Rubrivivax benzoatilyticus JA2]
Length = 424
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 236/401 (58%), Gaps = 10/401 (2%)
Query: 60 TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSI 119
T P + ADG L E + D+ P Y+YS+ + + Y++ALEGL +
Sbjct: 2 TLPGHPHLVRDADGELRLEGHSLADLARR-HGTPLYVYSRTAMLDALAGYQRALEGLPHL 60
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
I YAIKAN+N +L+ + GCG +VSG EL L AG +P+K +F+G GK ++ A
Sbjct: 61 ICYAIKANSNLAVLQTFARAGCGFDIVSGGELERVLAAGAEPSKIVFSGVGKTAAEMRRA 120
Query: 180 AQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ GV NV+S +LE + + G++ V LR+NPDVD HPY++TG K++KFGI
Sbjct: 121 LEVGVHCFNVESLGELERLAEVAAAMGRRAPVSLRVNPDVDAGTHPYISTGLKDNKFGIP 180
Query: 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+++ A P+ L++VG CH+GS IT+++ + DA +++ ++ + A+G + +
Sbjct: 181 HDEALAVYRRAAALPS-LQVVGIDCHIGSQITQLEPYLDALGRVLDLVEAVEAEGIALAH 239
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNH 355
+++GGGLGI Y T P P L+ + +L+ +R + L++EPGRSL+ N L+
Sbjct: 240 VDVGGGLGITY--TDEAPPSPETLVRGLADLMRARGHGHRQLLVEPGRSLVGNAGVLLAE 297
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
V +K TKNF ++D +M +L+RP++Y+A+ IE P D + +DVVGPVCES D
Sbjct: 298 VQYLKPGETKNFCIVDAAMNDLVRPAMYEAWMAIEPCRPG-ADTVAATWDVVGPVCESGD 356
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+LG++R L G + V AGAY M+MA YN + R E
Sbjct: 357 WLGRDRRLAVAP-GDIVAVLSAGAYGMAMAGNYNSRPRAAE 396
>gi|383756670|ref|YP_005435655.1| diaminopimelate decarboxylase LysA [Rubrivivax gelatinosus IL144]
gi|381377339|dbj|BAL94156.1| diaminopimelate decarboxylase LysA [Rubrivivax gelatinosus IL144]
Length = 424
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 237/401 (59%), Gaps = 10/401 (2%)
Query: 60 TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSI 119
T P ++ A G L E + D+ P Y+YS+ + + Y++ALEGL +
Sbjct: 2 TLPGHPHLARDAQGELRLEGHSLADLARR-HGTPLYVYSRAAMLDALAGYQRALEGLPHL 60
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
I YA+KAN+N +L+ + GCG +VSG EL L AG +P+K +F+G GK ++ A
Sbjct: 61 ICYAMKANSNLAVLQTFARAGCGFDIVSGGELERVLAAGAEPSKIVFSGVGKTAAEMRRA 120
Query: 180 AQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ GV NV+S +LE + + G++ V LR+NPDVD HPY++TG K++KFGI
Sbjct: 121 LEVGVHCFNVESLGELERLAEVAAAMGRRAPVSLRVNPDVDAGTHPYISTGLKDNKFGIP 180
Query: 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+++ A P+ L+++G CH+GS IT+++ + DA +++ ++ + A+G + +
Sbjct: 181 HDEALAAYRRAAALPS-LQVIGIDCHIGSQITQLEPYLDALGRLLDLVEAVEAEGIALAH 239
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNH 355
+++GGGLGI Y T P P L+ + EL+ +R + LI+EPGRSL+ N L+
Sbjct: 240 VDVGGGLGITY--TDEAPPAPETLVRALAELMRARGHGHRELIVEPGRSLVGNAGVLLAE 297
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
V +K TKNF ++D +M +L+RP++Y+A+ IE P+ A + +DVVGPVCES D
Sbjct: 298 VQYLKPGETKNFCIVDAAMNDLVRPAMYEAWMAIEPCRPSAGTA-AATWDVVGPVCESGD 356
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+LG++R L G + V AGAY M+MA YN + R E
Sbjct: 357 WLGRDRRLAVAP-GDIVAVLSAGAYGMAMAGNYNSRPRAAE 396
>gi|350560008|ref|ZP_08928848.1| diaminopimelate decarboxylase [Thioalkalivibrio thiocyanoxidans ARh
4]
gi|349782276|gb|EGZ36559.1| diaminopimelate decarboxylase [Thioalkalivibrio thiocyanoxidans ARh
4]
Length = 417
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 231/390 (59%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+CE V + ++ E V P Y+YS+ +TR+ A+ ALEG+ + +A+KAN++
Sbjct: 8 NGVLHCESVPLTEIAEAVGT-PAYVYSRATLTRHYHAFADALEGIPHQVCFAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL LRAG +P + +F+G GK ++ A Q G+ NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLRAGGEPGRVVFSGVGKTAAEMRRALQVGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-WFLDAV 249
+LE + + G + + +R+NPDVD + HPY+ATG + +KFG+ +L+A
Sbjct: 127 GPELELLDAVAGDMGLRAPIAIRVNPDVDAETHPYIATGLRENKFGVDIAAAHALYLEAA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ L + G H+GS +T++ F DA ++ D + G + ++++GGGLG+ Y
Sbjct: 187 RL--PHLDIRGVGFHIGSQLTRLTPFTDALQRVLALADDLERDGIRLAHIDVGGGLGVRY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P+P + +REL+ RN +++EPGR++ AN + V +K K+F V
Sbjct: 245 RDE--TPPEPADYATALRELLAGRNWPVLLEPGRAIAANAGVFLTRVEFLKHTAHKDFAV 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q E+V +P+D ++DVVGPVCE+ DFLG+EREL G
Sbjct: 303 VDGAMNDLIRPALYGAWQ--EIVPVSPRDGTQRRYDVVGPVCETGDFLGRERELVLAP-G 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MAS YN + RPPE V
Sbjct: 360 DLLAVRSAGAYGYVMASNYNSRPRPPEVMV 389
>gi|418300569|ref|ZP_12912390.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355533408|gb|EHH02741.1| diaminopimelate decarboxylase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 422
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 229/394 (58%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VSG ELR AL AG ++ +F+G GK + ++ A + G++ N++S
Sbjct: 67 VLKTLAKLGAGIDVVSGGELRRALGAGVPASRIMFSGVGKTVAEMDYALEAGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + GK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRAVKVGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ ++ +R G + +++IGGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVEALRTDGHTISHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + S N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYRDDNNPPPLPDAYAHIVKNELKSLNCKIITEPGRLIVGNAGILVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V DA K D+VGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHGIRPVVQPAVDAPRIKADIVGPVCETGDYLALDREMAAPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|157960206|ref|YP_001500240.1| diaminopimelate decarboxylase [Shewanella pealeana ATCC 700345]
gi|157845206|gb|ABV85705.1| diaminopimelate decarboxylase [Shewanella pealeana ATCC 700345]
Length = 414
Score = 268 bits (684), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 226/389 (58%), Gaps = 14/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E +V ++ + P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LYAEQCQVAELAKQ-HGTPLYIYSRATLERHWRAFDNAVSEHPHLICYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DPTK +F+G GK + ++ +A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELSRVIEAGGDPTKVVFSGVGKTVSEMEMALNLGIYCFNVESAAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + + GK V LRINPDVD HPY++TG K +KFGI E+ + A+ A
Sbjct: 130 LEQLNLVALRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAE----AIFARA 185
Query: 254 NE---LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
NE L + G CH+GS +T++ F DA M+ ID++ QG E+ + ++GGGLG+ Y
Sbjct: 186 NELPGLAVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIEIKHFDVGGGLGVTYD 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + E + R+L LI EPGR++ AN V V +K N K F ++
Sbjct: 246 DEQP--PQPDVYAAALLERLGDRDLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFALV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRPSLY A+Q I V + E +DVVGPVCE+ DFLGK+R+L + G
Sbjct: 304 DGAMNDLIRPSLYSAWQKI--VPVIERAGESHSYDVVGPVCETGDFLGKDRQLNVQE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +MAS YN + R E V
Sbjct: 361 YLAVRSSGAYGFTMASNYNSRPRAAELMV 389
>gi|317153254|ref|YP_004121302.1| diaminopimelate decarboxylase [Desulfovibrio aespoeensis Aspo-2]
gi|316943505|gb|ADU62556.1| diaminopimelate decarboxylase [Desulfovibrio aespoeensis Aspo-2]
Length = 412
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 232/398 (58%), Gaps = 12/398 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ E+V V + P Y+YS +TR+ +A+ A +GL+ + Y++
Sbjct: 2 HHFEYR-DGALFAEEVPVT-ALAGQYGTPLYVYSAATLTRHFQAFDSAFDGLDHLTCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L LG G +VSG EL AL+AG P K +++G GK ++ A G+
Sbjct: 60 KANSNLSVLKLLAGLGAGMDIVSGGELYRALKAGVSPDKIVYSGVGKRPSEIREALDAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ N++S +L I + AGK V RINPDVDPQ HPY++TG K +KFG+ ++
Sbjct: 120 LMFNIESVAELLKINEVAGEAGKVAKVSFRINPDVDPQTHPYISTGMKKNKFGL---DIE 176
Query: 244 WFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
L+A + A ++ +G CH+GS +T + F +A ++++ +++ G + YL++
Sbjct: 177 NSLEAYRMCADLANIEPIGMDCHIGSQLTSIAPFMEALDKLLDFYGRLKDMGIGIKYLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y P P ++E + L +I+EPGR + N LV V K+
Sbjct: 237 GGGLGITYDEEEP--PHPTEFGQALKEKLTGVPLKVILEPGRVIAGNAGILVTEVVYTKS 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
N ++NF+++D +M +L+RPSLY +Y I V+P +D+ +DVVGP+CES DFL +ER
Sbjct: 295 NPSRNFLIVDAAMNDLVRPSLYGSYHRIAEVTPKERDS--LTYDVVGPICESGDFLARER 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP ++G L V AGAY +M+S YN + R E V
Sbjct: 353 ALPAVNQGELLAVFSAGAYGFTMSSNYNSRPRACELLV 390
>gi|386392604|ref|ZP_10077385.1| diaminopimelate decarboxylase [Desulfovibrio sp. U5L]
gi|385733482|gb|EIG53680.1| diaminopimelate decarboxylase [Desulfovibrio sp. U5L]
Length = 412
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 229/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + G LY EDV V ++ P Y+YS + R+ A+ A GL + +++
Sbjct: 2 HHFAYRG-GELYAEDVPVSTLVAAY-GTPLYVYSAATLRRHFTAFDSAFGGLPHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +G G +VSG EL AL AG P K +++G GK ++ A G+
Sbjct: 60 KANSNLSVLKTLAAMGAGVDIVSGGELYRALAAGVAPEKIVYSGVGKRAAEIEQALSAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE-KL 242
+ NV+S +LE I ++ GK V LRINPDVDP+ HPY++TG K +KFG+ E L
Sbjct: 120 LMFNVESLGELERISAIAKRLGKTAQVSLRINPDVDPKTHPYISTGLKKNKFGLDIENSL 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ AV+ PN + VG CH+GS +T + F +A ++ + +K+ A G E YL++G
Sbjct: 180 AAYAKAVEL-PN-ITPVGIDCHIGSQLTSISPFLEALDKILAFREKLCAMGIEPRYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P+ + + + + + LI+EPGR ++ N LV V K
Sbjct: 238 GGLGIQYNEEEP--PHPKEFGEALTKAIGDLPMTLILEPGRVIVGNAGILVTEVVYTKKT 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+K+F+++D +M +LIRPSLYD++ I V PA + E DVVGP+CES DFL ++R+
Sbjct: 296 PSKDFVIVDAAMNDLIRPSLYDSFHAIREVRPAGR--ETLNVDVVGPICESGDFLARDRD 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP G L V+ AGAY +M+S YN + R E V
Sbjct: 354 LPAVAPGELLAVYSAGAYGFTMSSNYNSRPRAAEILV 390
>gi|114049121|ref|YP_739671.1| diaminopimelate decarboxylase [Shewanella sp. MR-7]
gi|113890563|gb|ABI44614.1| diaminopimelate decarboxylase [Shewanella sp. MR-7]
Length = 414
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 227/390 (58%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY E RV D+ + P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 8 DNTLYAEGCRVNDLAQQY-GTPLYIYSRATLERHWHAFNNAVADHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK + ++ A G++ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+LE + VA R+ GK V LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 127 SAELEQLNQVAGRL-GKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFARA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P+ L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 186 HALPH-LQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + R L LI EPGR++ AN V V +K N K F +
Sbjct: 245 --DDETPPHPDVYAAALLARLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q+I V+P + A++ FD+VGPVCE+ DFLGK+R L G
Sbjct: 303 VDGAMNDLIRPALYSAWQNIIPVNPRDEQAQV--FDIVGPVCETGDFLGKDRALAIA-AG 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV +GAY +MAS YN + R E V
Sbjct: 360 DLLVVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|157377262|ref|YP_001475862.1| diaminopimelate decarboxylase [Shewanella sediminis HAW-EB3]
gi|157319636|gb|ABV38734.1| diaminopimelate decarboxylase [Shewanella sediminis HAW-EB3]
Length = 414
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 229/395 (57%), Gaps = 14/395 (3%)
Query: 72 DGFLY------CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
D FLY ED +V + +T P Y+YS+ + R+ A+ +A+ +I YA+K
Sbjct: 2 DHFLYKNNELQAEDCQVAQLAQTY-GTPLYIYSRATLERHWHAFDRAVANHPHLICYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VSG EL + AG P K +F+G GK + ++ +A G+
Sbjct: 61 ANSNIAVLNVLARLGSGFDIVSGGELSRVIEAGGSPDKVVFSGVGKTVAEMEMALNLGIH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + + GK V LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESAAELEQLNLVAVQLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ P L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGG
Sbjct: 181 IFARANSLPG-LEVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGINIEHFDVGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P+P + E + R+L LI EPGR++ AN V V +K N
Sbjct: 240 LGVTY--DDETPPQPDVYAAALLERLGGRDLKLIFEPGRAIAANAGIFVTQVLYLKGNSD 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++DG+M +LIRPSLY A+Q+I + P++ E +D+VGPVCE+ DFLGK+REL
Sbjct: 298 KHFALVDGAMNDLIRPSLYSAWQNI--IPVKPREGETRNYDIVGPVCETGDFLGKDREL- 354
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G L V +GAY +M+S YN + R E V
Sbjct: 355 NLDAGDFLAVRSSGAYGFTMSSNYNSRPRAAEIMV 389
>gi|15966402|ref|NP_386755.1| diaminopimelate DAP decarboxylase [Sinorhizobium meliloti 1021]
gi|334317406|ref|YP_004550025.1| diaminopimelate decarboxylase [Sinorhizobium meliloti AK83]
gi|384530532|ref|YP_005714620.1| diaminopimelate decarboxylase [Sinorhizobium meliloti BL225C]
gi|384537232|ref|YP_005721317.1| diaminopimelate DAP decarboxylase protein [Sinorhizobium meliloti
SM11]
gi|407721716|ref|YP_006841378.1| diaminopimelate decarboxylase [Sinorhizobium meliloti Rm41]
gi|433614470|ref|YP_007191268.1| diaminopimelate decarboxylase [Sinorhizobium meliloti GR4]
gi|15075673|emb|CAC47228.1| Probable diaminopimelate DAP decarboxylase [Sinorhizobium meliloti
1021]
gi|333812708|gb|AEG05377.1| diaminopimelate decarboxylase [Sinorhizobium meliloti BL225C]
gi|334096400|gb|AEG54411.1| diaminopimelate decarboxylase [Sinorhizobium meliloti AK83]
gi|336034124|gb|AEH80056.1| diaminopimelate DAP decarboxylase protein [Sinorhizobium meliloti
SM11]
gi|407319948|emb|CCM68552.1| Diaminopimelate decarboxylase [Sinorhizobium meliloti Rm41]
gi|429552660|gb|AGA07669.1| diaminopimelate decarboxylase [Sinorhizobium meliloti GR4]
Length = 422
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 228/402 (56%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + ++ V PFY YS + R+ + + QA +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPLTEIARAV-GTPFYCYSTATLERHYKVFSQAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGLDVVSEGELRRALAAGIPAGRIMFSGVGKTAREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AG++ V RINPDVD + H ++TG K +KFGI E+ + V
Sbjct: 127 EPELEVLNQRAVRAGRRAPVSFRINPDVDARTHAKISTGKKENKFGISWERAR----GVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH EL ++ G H+GS IT++ F DA L+ +D +R+ G +++++IGGGLGI
Sbjct: 183 AHAAELPGIEVTGIDMHIGSQITELQPFDDAFKLLRELVDTLRSDGHVIEHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P D V+ + + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYREDNNPPPLPDAYADIVKNQLKGLDCKIVTEPGRLIVGNAGILVTEVVYVKDGGDKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V + A K DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVKISAASAPRIKADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLFAIGSAGAYGAVQAGTYNSRLLVPEVLVKGDRFHVIRP 404
>gi|37196770|dbj|BAC92756.1| diaminopimelate decarboxylase [Methylophilus methylotrophus]
Length = 414
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 230/388 (59%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E+V ++D+ +T + P Y+YS+ +T E ++ L G + +I +A+KAN + I
Sbjct: 9 GLLHAENVALRDIAQT-HQTPTYVYSRAALTTAFERFQAGLTGHDHLICFAVKANPSLAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L ++G G +VSG EL L AG DP K +F+G GK ++ A + G+ NV+S
Sbjct: 68 LNLFARMGAGFDIVSGGELARVLAAGGDPKKVVFSGVGKSHAEIKAALEAGILCFNVESV 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ I + GKK + LR+NP+VD + HPY++TG KN+KFG+ E +
Sbjct: 128 NELDRIQQVAASLGKKAPISLRVNPNVDAKTHPYISTGLKNNKFGVAFEDALGLYEKAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN +++ G CH+GS IT++ F DA ++ +D + A+G + ++++GGG+GI Y
Sbjct: 188 LPN-IEVHGVDCHIGSQITELSPFLDALDKVLGLVDALAAKGIHIQHIDVGGGVGITY-- 244
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+ P + + + RN+ ++ EPGR+L+ N L+ V +K TKNF ++D
Sbjct: 245 SDETPPDFAAYTAAILKKLAGRNVKVLFEPGRALVGNAGVLLTKVEYLKPGETKNFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDA+ +I ++ + A+I +++VGPVCES DFLG +R L + G
Sbjct: 305 AAMNDLMRPALYDAFHNITTIATSAAPAQI--YEIVGPVCESGDFLGHDRTLAI-EEGDY 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L +H AGAY MSMAS YN + R E V
Sbjct: 362 LAIHSAGAYGMSMASNYNTRARAAEVLV 389
>gi|113968735|ref|YP_732528.1| diaminopimelate decarboxylase [Shewanella sp. MR-4]
gi|113883419|gb|ABI37471.1| diaminopimelate decarboxylase [Shewanella sp. MR-4]
Length = 414
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 227/390 (58%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY E RV D+ + P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 8 DNTLYAEGCRVNDLAQQY-GTPLYIYSRATLERHWHAFNNAVADHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK + ++ A G++ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+LE + VA R+ GK V LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 127 SAELEQLNQVAGRL-GKIAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFARA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P+ L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 186 HALPH-LQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + R L LI EPGR++ AN V V +K N K F +
Sbjct: 245 --DDETPPHPDVYAAALLARLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q+I V+P + A++ FD+VGPVCE+ DFLGK+R L G
Sbjct: 303 VDGAMNDLIRPALYSAWQNIIPVNPRDEQAQV--FDIVGPVCETGDFLGKDRALAIA-AG 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV +GAY +MAS YN + R E V
Sbjct: 360 DLLVVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|167625818|ref|YP_001676112.1| diaminopimelate decarboxylase [Shewanella halifaxensis HAW-EB4]
gi|167355840|gb|ABZ78453.1| diaminopimelate decarboxylase [Shewanella halifaxensis HAW-EB4]
Length = 414
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/386 (39%), Positives = 223/386 (57%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E +V ++ + P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LYAEQCQVAELAKQ-HGTPLYIYSRATLERHWHAFDNAVSDHPHLICYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DP K +F+G GK +E++ +A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELSRVIEAGGDPAKVVFSGVGKTVEEMEMALNLGIYCFNVESAAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + + GK V LR+NPDVD HPY++TG K +KFGI E + P
Sbjct: 130 LEQLNLVALRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMEGAEAIFTRANELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L++ G CH+GS +T++ F DA M+ ID++ QG E+ + ++GGGLG+ Y
Sbjct: 190 G-LEVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIEIKHFDVGGGLGVTYDEE- 247
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
V P+P + E + R+L LI EPGR++ AN V V +K N K F ++DG+
Sbjct: 248 -VPPQPDVYAAALLERLDGRDLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFALVDGA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPSLY A+Q I + + E+ +DVVGPVCE+ DFLGK+REL G L
Sbjct: 307 MNDLIRPSLYSAWQKI--IPVIERAGEMQTYDVVGPVCETGDFLGKDRELNIL-AGDYLA 363
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
+ +GAY +M+S YN + R E V
Sbjct: 364 IRSSGAYGFTMSSNYNSRPRAAELMV 389
>gi|288817402|ref|YP_003431749.1| diaminopimelate decarboxylase [Hydrogenobacter thermophilus TK-6]
gi|384128172|ref|YP_005510785.1| diaminopimelate decarboxylase [Hydrogenobacter thermophilus TK-6]
gi|288786801|dbj|BAI68548.1| diaminopimelate decarboxylase [Hydrogenobacter thermophilus TK-6]
gi|308751009|gb|ADO44492.1| diaminopimelate decarboxylase [Hydrogenobacter thermophilus TK-6]
Length = 415
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 233/391 (59%), Gaps = 12/391 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ + E P Y+YS I V AY++A +++I YA+KAN N
Sbjct: 13 DGELHLEGVSLKALAEEF-GTPLYVYSASHIRDRVRAYREAFP--DALICYAVKANFNPS 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
I+ R+ G GA +VSG EL +L AG +P++ ++ G GK L++L A + + + NV+S
Sbjct: 70 IIRVAREEGAGADIVSGGELYASLLAGVEPSRIVYAGVGKTLKELEYAIKSDILMFNVES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDA 248
+L+ + + GKK+ + +R+NPDVDP+ HPY++TG K SKFG I++ K ++
Sbjct: 130 RMELDVLNHLAESLGKKIRIAIRVNPDVDPKTHPYISTGMKKSKFGVDIKHAKQEY---Q 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
L++VG HCH+GS I V + +A +V+ ++ GFE+ Y++IGGGLGI
Sbjct: 187 YAGKLKNLEVVGIHCHIGSQILDVSPYIEAVEKVVDLYHELVRSGFEIRYVDIGGGLGIK 246
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P+P++L + V + + +++EPGRS++ N L+ V +K G K+F+
Sbjct: 247 Y-KPDQSNPEPKDLAEAVMPALKGVDAKILLEPGRSIVGNAGLLITRVEFLKDKGHKHFV 305
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D M +LIRP++YDAY HI V +D K D+VGP+CE+ DFL +RE+ +R
Sbjct: 306 IVDAGMNDLIRPAMYDAYHHI--VPVVKRDTGYIKTDIVGPICETGDFLALDREIQKVER 363
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +M+S YN++ R E V
Sbjct: 364 GDYLAVLSAGAYGFAMSSHYNVRPRACEVLV 394
>gi|209551143|ref|YP_002283060.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424916591|ref|ZP_18339955.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|209536899|gb|ACI56834.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|392852767|gb|EJB05288.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 422
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 229/394 (58%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG ++ +F+G GK +++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPASRIMFSGVGKTPQEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AG K V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVKAGTKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ + + +RA G +D+++IGGGLGI
Sbjct: 183 AHAARLPGIEVTGIDMHIGSQITELQPFDDAFKLLHDLVATLRADGHTIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLIAVSTAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|92118935|ref|YP_578664.1| diaminopimelate decarboxylase [Nitrobacter hamburgensis X14]
gi|91801829|gb|ABE64204.1| diaminopimelate decarboxylase [Nitrobacter hamburgensis X14]
Length = 421
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 224/402 (55%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E V PFY YS + R+ + A G++ ++ YA+KAN+N
Sbjct: 8 DGVLHAESVNLSALAEVVGT-PFYCYSTATLERHYRVFADAFAGVDHLVCYAVKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L KLG GA +VSG EL+ AL AG +K +F+G GK +L A A + + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPASKILFSGVGKTDAELRAALAVDVLCINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + AG+ + +R+NPDVD H ++TG +KFGI + + AV
Sbjct: 127 EPELDLLSKLASEAGRTARISIRVNPDVDSGTHAKISTGRSENKFGIPIARAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L + G H+GS IT + A L+ +++ +RA G + +++ GGGLGI
Sbjct: 183 AHAAKLPGIAVTGVDMHIGSQITDLGPMEAAFRLLADFVTTLRADGHTISHVDFGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
YY A P+P + VR + + L+ EPGR ++ N LV V VK +NF
Sbjct: 243 PYYEDRAAPPEPLAYAEMVRRVTHNLGCTLMFEPGRMIVGNAGILVTRVIYVKHGDARNF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
I+ID +M +LIRP+LY+AY I V AP+DA + DVVGPVCE+ D+L R LP P
Sbjct: 303 IIIDAAMNDLIRPTLYEAYHQIIPVRAAPKDAPVMVADVVGPVCETGDYLALGRNLPEPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY + TYN + PE V+ ++ P
Sbjct: 363 AGDLLAIMTAGAYGAVQSGTYNTRALIPEVLVKDDQYAVVRP 404
>gi|117918847|ref|YP_868039.1| diaminopimelate decarboxylase [Shewanella sp. ANA-3]
gi|117611179|gb|ABK46633.1| diaminopimelate decarboxylase [Shewanella sp. ANA-3]
Length = 414
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 227/390 (58%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY E RV D+ + P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 8 DNTLYAEGCRVNDLAQQY-GTPLYIYSRATLERHWHAFNNAVADHPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK + ++ A G++ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+LE + VA R+ GK V LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 127 SAELEQLNDVAGRL-GKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFARA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P+ L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 186 HALPH-LQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLADQGIVIEHFDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + R L LI EPGR++ AN V V +K N K F +
Sbjct: 245 --DDETPPHPDVYAAALLARLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +LIRP+LY A+Q+I V+P + A++ FD+VGPVCE+ DFLGK+R L G
Sbjct: 303 VDGAMNDLIRPALYSAWQNIIPVNPRDEQAQV--FDIVGPVCETGDFLGKDRALAIA-AG 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV +GAY +MAS YN + R E V
Sbjct: 360 DLLVVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|78357021|ref|YP_388470.1| diaminopimelate decarboxylase [Desulfovibrio alaskensis G20]
gi|78219426|gb|ABB38775.1| diaminopimelate decarboxylase [Desulfovibrio alaskensis G20]
Length = 415
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 228/402 (56%), Gaps = 18/402 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + D L+ E+V VQ+++ T P Y+YSK R+ A+ A L + Y++
Sbjct: 2 HHFTYR-DNELFVENVAVQELVATY-GTPLYIYSKATFQRHFTAFDSAFGALPHLTCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KA +N IL L K+G G +VSG EL ALRAG P K +++G GK +++ A + G+
Sbjct: 60 KACSNMHILRFLGKMGAGMDIVSGGELFRALRAGIQPAKIVYSGVGKTRTEILQALEAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+S +LE I + G NV LRINPDVDP HPY++TG K +KFG+ E+
Sbjct: 120 LMFNVESMGELEKISEVANQTGHTANVALRINPDVDPHTHPYISTGLKENKFGLDMEQ-- 177
Query: 244 WFLDAVKAHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+ A+ ++L +G CH+GS +T + FR+A ++ + +K+ + G +DY
Sbjct: 178 ----SYAAYMRAMELPAITPMGIDCHIGSQLTSLSPFREAVEKILLFREKLCSAGLCIDY 233
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
+++GGGLGI Y P P+ + +++ + LI+EPGR + N LV V
Sbjct: 234 IDLGGGLGIPY--DTEEPPHPQEFGKLLTDMLSGLGITLILEPGRVIAGNAGILVTKVQY 291
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
K TK F+++D +M +LIRPSLY ++ HI VSP + DVVGP+CES DFL
Sbjct: 292 TKKTATKEFVIVDAAMNDLIRPSLYQSHHHIAEVSPRGRAKH--TVDVVGPICESGDFLA 349
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
++R +P + L V AGAY +M+S YN + R E VR
Sbjct: 350 RDRLMPAVEPRELLAVFSAGAYGFTMSSQYNSRPRAAEVLVR 391
>gi|107104378|ref|ZP_01368296.1| hypothetical protein PaerPA_01005454 [Pseudomonas aeruginosa PACS2]
gi|218894380|ref|YP_002443250.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa LESB58]
gi|254243836|ref|ZP_04937158.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 2192]
gi|386061455|ref|YP_005977977.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa M18]
gi|392986960|ref|YP_006485547.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa DK2]
gi|419756342|ref|ZP_14282693.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PADK2_CF510]
gi|420142429|ref|ZP_14650028.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa CIG1]
gi|421156813|ref|ZP_15616251.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa ATCC 14886]
gi|421163807|ref|ZP_15622488.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa ATCC 25324]
gi|421183366|ref|ZP_15640826.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa E2]
gi|424943921|ref|ZP_18359684.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa NCMG1179]
gi|451987041|ref|ZP_21935203.1| Diaminopimelate decarboxylase [Pseudomonas aeruginosa 18A]
gi|126197214|gb|EAZ61277.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 2192]
gi|218774609|emb|CAW30426.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa LESB58]
gi|346060367|dbj|GAA20250.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa NCMG1179]
gi|347307761|gb|AEO77875.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa M18]
gi|384397427|gb|EIE43839.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PADK2_CF510]
gi|392322465|gb|AFM67845.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa DK2]
gi|403244808|gb|EJY58665.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa CIG1]
gi|404518584|gb|EKA29408.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa ATCC 14886]
gi|404527464|gb|EKA37621.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa ATCC 25324]
gi|404540274|gb|EKA49687.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa E2]
gi|451755356|emb|CCQ87726.1| Diaminopimelate decarboxylase [Pseudomonas aeruginosa 18A]
Length = 415
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DGELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAAPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|153003227|ref|YP_001377552.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. Fw109-5]
gi|152026800|gb|ABS24568.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. Fw109-5]
Length = 422
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 225/392 (57%), Gaps = 5/392 (1%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
++ G L+ E + ++ + E P Y+YS +TR+ + ++L G+ ++ YA+KAN
Sbjct: 5 QRKKGVLHAEAIPLERLAERYGT-PLYVYSTATLTRHWKVLHRSLAGIRHVVCYAVKANA 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-N 187
N +L KLG G +VS EL L+AG DP K +F+G GK +++ A + GV V N
Sbjct: 64 NLALLARFAKLGSGFDIVSAGELYRVLKAGGDPRKVVFSGVGKRDDEIAFALESGVRVLN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+S +L I + +R G + + LR+NPDVDP+ HPY++TG + +KFG+ ++ + L
Sbjct: 124 VESAGELARISIVARRMGVRAPIALRVNPDVDPKTHPYISTGLRENKFGVSVDEARR-LY 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ A L ++G H+GS IT V F DA +++ ++ QG + +L++GGGLGI
Sbjct: 183 PLAAKDEALHVMGIASHIGSQITTVKPFLDAIDRVLSLARELEKQGIPLAHLDVGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P +R+ + +++EPGR L+ N LV V VK +G K F
Sbjct: 243 RYKDEDP--PHPDEYGAAIRKALARWKGEVLLEPGRVLVGNAGVLVTRVLHVKRSGRKTF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+V+D +M +L+RP++YDA+ IE V P + DVVGP+CES+DFL ++R +P P
Sbjct: 301 VVVDAAMNDLVRPAIYDAHHDIEPVGPPREGEREVVADVVGPICESSDFLARKRRMPEPV 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY SM+S YN + R E V
Sbjct: 361 PGDLLAVRSAGAYGFSMSSNYNARPRAAEVLV 392
>gi|75674910|ref|YP_317331.1| diaminopimelate decarboxylase [Nitrobacter winogradskyi Nb-255]
gi|74419780|gb|ABA03979.1| diaminopimelate decarboxylase [Nitrobacter winogradskyi Nb-255]
Length = 421
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 219/398 (55%), Gaps = 4/398 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV + + E V PFY YS + R+ + +A G + +I YA+
Sbjct: 2 HHFDYR-DGVLHAEDVDLSTLAEAVGT-PFYCYSTATLERHYRVFAEAFAGTDHLICYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L + +LG GA +VSG EL+ AL A +K +F+G GK +L A V
Sbjct: 60 KANSNQSVLRTMARLGAGADVVSGGELKRALAANIPASKILFSGVGKTESELRAALAADV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +L+ + + G+ + +R+NPDVD H ++TG +KFGI + +
Sbjct: 120 LCINVESEPELDLLSRVAVETGRTARISVRVNPDVDSGTHAKISTGRLENKFGIPITQAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +K+ GA H+GS IT + A L+ +++ +RA G + +++ GG
Sbjct: 180 AVYARAAKLPG-IKVTGADMHIGSQITDLGPMETAFRLLADFVGTLRADGHVISHVDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI YY + P+P + VR + + L+ EPGR ++ N LV V VK
Sbjct: 239 GLGIPYYEDRSAPPEPLAYAEMVRRVTRDLDCTLMFEPGRMIVGNAGVLVTRVIYVKHGN 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF++ID +M +LIRP+LY+AY I V AP+DA + DVVGPVCE+ D+L R L
Sbjct: 299 ARNFVIIDAAMNDLIRPTLYEAYHQIMPVRAAPRDAAVMVADVVGPVCETGDYLALGRNL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
P P G L + AGAY + TYN + PE VR
Sbjct: 359 PEPQAGDLLAIMTAGAYGAVQSGTYNTRALVPEVLVRG 396
>gi|416854432|ref|ZP_11910867.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 138244]
gi|334843996|gb|EGM22576.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 138244]
gi|453043231|gb|EME90964.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PA21_ST175]
Length = 415
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DGELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLRGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAVPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|190893634|ref|YP_001980176.1| diaminopimelate decarboxylase [Rhizobium etli CIAT 652]
gi|190698913|gb|ACE92998.1| diaminopimelate decarboxylase protein [Rhizobium etli CIAT 652]
Length = 422
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 229/394 (58%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGILHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G +D+++IGGGLG+
Sbjct: 183 AHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLRDLVATLRADGHTIDHVDIGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRDLNCKVITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G L V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLLAVSTAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|424912372|ref|ZP_18335749.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. viciae
USDA 2370]
gi|392848403|gb|EJB00926.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. viciae
USDA 2370]
Length = 422
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 231/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ E V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAEAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VSG ELR AL AG + +F+G GK + ++ A G++ N++S
Sbjct: 67 VLKTLAKLGAGIDVVSGGELRRALAAGVPANRIMFSGVGKTVAEMDYALDVGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRAIKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ ++ +R G + +++IGGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVEALRGDGHAISHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + S + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYRDDNNPPPLPDAYAHIVKNELKSLDCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V +D K D+VGPVCE+ D+L +R++ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHGIRPVVQPAEDTPRIKADIVGPVCETGDYLALDRDMAAPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKGDKFHVIRP 404
>gi|114561631|ref|YP_749144.1| diaminopimelate decarboxylase [Shewanella frigidimarina NCIMB 400]
gi|114332924|gb|ABI70306.1| diaminopimelate decarboxylase [Shewanella frigidimarina NCIMB 400]
Length = 414
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/387 (40%), Positives = 224/387 (57%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED V + +T P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LFAEDCDVAKLAKT-HGTPLYIYSRATLERHWHAFNNAVADHPHLICYAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL L+AG DP K +F+G GK + ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELSRVLQAGGDPKKVVFSGVGKTVAEMEQALNIGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + VASR+ GK V LRINPDVD HPY++TG K +KFGI E+ + A A
Sbjct: 130 LEQLNEVASRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEVVF-ARAAE 187
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
L + G CH+GS +T++ F DA M+ ID++ QG ++++ ++GGGLG+ Y
Sbjct: 188 LAHLHVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLGEQGIQIEHFDVGGGLGVTY--N 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 SETPPHPDAYAAALLERLNGRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRPSLY A+Q+I + DA +D+VGPVCE+ DFLGK+R+L G L
Sbjct: 306 AMNDLIRPSLYSAWQNI--IPVQQNDAPTFAYDIVGPVCETGDFLGKDRQLAVKS-GDLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ +GAY +MAS YN + R E V
Sbjct: 363 AIRSSGAYGFAMASNYNSRPRVAEIMV 389
>gi|408785639|ref|ZP_11197382.1| diaminopimelate decarboxylase [Rhizobium lupini HPC(L)]
gi|408488534|gb|EKJ96845.1| diaminopimelate decarboxylase [Rhizobium lupini HPC(L)]
Length = 422
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 231/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYKVFSGAFADVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VSG ELR AL AG + +F+G GK + ++ A G++ N++S
Sbjct: 67 VLKTLAKLGAGIDVVSGGELRRALAAGVPANRIMFSGVGKTVAEMDYALDVGIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + AGK+ +V RINPDVD + H ++TG K +KFGI E+ + AV
Sbjct: 127 EPELEVLNLRAIKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERAR----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ ++ +R G + +++IGGGLGI
Sbjct: 183 AHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVEALRGDGHAISHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + S + ++ EPGR ++ N LV V VK G K F
Sbjct: 243 PYRDDNNPPPLPDAYAHIVKNELKSLDCKIVTEPGRLIVGNAGVLVTEVIYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V +D K D+VGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHGIRPVVQPAEDTPRIKADIVGPVCETGDYLALDREMAAPQ 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLIAVSSAGAYGAVQAGTYNSRLLVPEVLVKGDKFHVIRP 404
>gi|433501643|ref|ZP_20458623.1| diaminopimelate decarboxylase [Neisseria meningitidis NM174]
gi|432233142|gb|ELK88775.1| diaminopimelate decarboxylase [Neisseria meningitidis NM174]
Length = 406
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 232/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN++ R E V
Sbjct: 354 LLIRSAGAYGASMASNYNVRNRAAEVLV 381
>gi|254804203|ref|YP_003082424.1| diaminopimelate decarboxylase [Neisseria meningitidis alpha14]
gi|254667745|emb|CBA03656.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha14]
Length = 406
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 232/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y +
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQN 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|441506530|ref|ZP_20988498.1| Diaminopimelate decarboxylase [Photobacterium sp. AK15]
gi|441425736|gb|ELR63230.1| Diaminopimelate decarboxylase [Photobacterium sp. AK15]
Length = 417
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 237/395 (60%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ ED+ + ++ + P Y+YS+ + R+ A+ +A+ ++ YA+KA
Sbjct: 4 FNYQQDGQLWAEDIALTELAKR-HGTPLYVYSRATLERHWHAFDRAVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNIAVLNVLARLGSGFDIVSQGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + GK + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNEVAGELGKVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
K+ PN LK+ G CH+GS +T++ F DA ++ ID ++A+G E+D+L++GGGL
Sbjct: 183 YRLAKSLPN-LKVTGIDCHIGSQLTEIGPFVDAIDRLLALIDTLKAEGIEIDHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNL-IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L + L L+ EPGR++ AN ++ V +K
Sbjct: 242 GVTY--SDEQPPQPSEYATELLARLKDHKELELVFEPGRAIAANAGVMLTRVEYLKLTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +LIRP+LY A+Q E+V P++ E+ +DVVGP+CE+ DF+GK+R L
Sbjct: 300 KNFAIVDAAMNDLIRPTLYQAWQ--EIVPVVPREGEVVIYDVVGPICETGDFIGKDRGLC 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++G L V AGAY MAS YN ++R E V
Sbjct: 358 V-EQGDLLAVRSAGAYGFVMASNYNTRVRAAEIMV 391
>gi|116053426|ref|YP_793751.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|254238026|ref|ZP_04931349.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa C3719]
gi|296392135|ref|ZP_06881610.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAb1]
gi|313106693|ref|ZP_07792911.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 39016]
gi|355643594|ref|ZP_09053416.1| diaminopimelate decarboxylase [Pseudomonas sp. 2_1_26]
gi|386068932|ref|YP_005984236.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa NCGM2.S1]
gi|416875318|ref|ZP_11918619.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 152504]
gi|421177540|ref|ZP_15635189.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa CI27]
gi|115588647|gb|ABJ14662.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169957|gb|EAZ55468.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa C3719]
gi|310879413|gb|EFQ38007.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 39016]
gi|334842097|gb|EGM20711.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 152504]
gi|348037491|dbj|BAK92851.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa NCGM2.S1]
gi|354829544|gb|EHF13608.1| diaminopimelate decarboxylase [Pseudomonas sp. 2_1_26]
gi|404529229|gb|EKA39277.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa CI27]
Length = 415
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DGELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAVPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|338998338|ref|ZP_08637012.1| diaminopimelate decarboxylase [Halomonas sp. TD01]
gi|338764655|gb|EGP19613.1| diaminopimelate decarboxylase [Halomonas sp. TD01]
Length = 423
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 231/397 (58%), Gaps = 19/397 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + + + P Y+YSK + R+ AY +AL G +I YA+KAN+N
Sbjct: 8 DGVLYAEDVPLTQLAADL-GTPCYVYSKATLERHFRAYTEALGGHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L+AG DP+K +F+G K ++ A G+ NV+S
Sbjct: 67 VLGLLARLGAGFDIVSIGELERVLKAGGDPSKIVFSGVAKQPHEMARALDVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+LE + + GK V LR+NPDVD HPY++TG K++KFGI +E L + +
Sbjct: 127 RPELERLNAVAAELGKVAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEALDVY--TL 184
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A L++ G CH+GS +T+ F DA ++ ++++R +G E+D+L++GGGLG+ Y
Sbjct: 185 AASLPHLRVKGLDCHIGSQLTETAPFLDALERLLMLMERLRERGIEIDHLDLGGGLGVPY 244
Query: 310 YHTGAVLPKPRNLIDTVRELV--LSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
KP D +L+ LSR L L+ EPGRS+ AN ++ V +K
Sbjct: 245 RDE-----KPPQPFDYASQLLARLSRWEGGEALTLLFEPGRSIAANAGLMLTRVEFLKPG 299
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
TKNF ++D +M +LIRP+LY A+Q I V Q + + +DVVGPVCE+ DFLGKERE
Sbjct: 300 ETKNFAIVDAAMNDLIRPALYQAWQAIVPVD-TRQQRKCAVYDVVGPVCETGDFLGKERE 358
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + G L V AGAY MAS YN + RPPE V
Sbjct: 359 LAIAE-GDLLAVRSAGAYGFVMASNYNSRPRPPEVMV 394
>gi|296314185|ref|ZP_06864126.1| diaminopimelate decarboxylase [Neisseria polysaccharea ATCC 43768]
gi|296839164|gb|EFH23102.1| diaminopimelate decarboxylase [Neisseria polysaccharea ATCC 43768]
Length = 406
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|253702729|ref|YP_003023918.1| diaminopimelate decarboxylase [Geobacter sp. M21]
gi|251777579|gb|ACT20160.1| diaminopimelate decarboxylase [Geobacter sp. M21]
Length = 417
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 227/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + L+ EDV ++D++ V P Y+YSK + R+ +A A I Y++
Sbjct: 2 HHFQYKGEE-LFAEDVAIKDIVAAV-GSPVYIYSKATLERHYKAMDDAFAQAPHTICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ LG G +VSG EL AL AG DP K +++G GK E++ A + G+
Sbjct: 60 KANSNLAVLKTFVNLGGGVDIVSGGELYRALAAGVDPKKVVYSGVGKRDEEIAYALESGI 119
Query: 185 FV-NVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++SE +L+ I VA RI G+K + +R+NPDVDPQ HPY+ TG K +KFGI E+
Sbjct: 120 LMFNIESEQELDRISEVAGRI-GRKAGIAIRVNPDVDPQTHPYITTGLKKAKFGINIERA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
K + ++++G CH+GS +TKV F DA + ++ +R G +V YL++G
Sbjct: 179 LEQYQRAKGLAD-IEILGIDCHIGSQLTKVSPFVDAIKKLKRLLEGVRGMGIDVRYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P + +++E L+LI EPGR+L+ N LV K
Sbjct: 238 GGLGIQYDDEAP--PLPADYGSSIQEETKDLGLHLIFEPGRNLVGNAGILVGKCLYTKKG 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF+++D M +L RP+LY ++ + V QD I D+VGP+CES DFL KERE
Sbjct: 296 EEKNFVIVDAGMNDLARPALYGSFHGVRPVL-RNQDGVIEG-DIVGPICESGDFLVKERE 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+P +G + AGAY +M+S YN + R E V
Sbjct: 354 IPNFRQGDLIAFMSAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|163748703|ref|ZP_02155956.1| diaminopimelate decarboxylase [Shewanella benthica KT99]
gi|161331813|gb|EDQ02617.1| diaminopimelate decarboxylase [Shewanella benthica KT99]
Length = 414
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 158/404 (39%), Positives = 235/404 (58%), Gaps = 16/404 (3%)
Query: 72 DGFLY------CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
D FLY ED V ++ T P Y+YS+ + R+ A+ +A+ +I YA+K
Sbjct: 2 DHFLYKNNELLAEDCSVAELART-HGTPLYIYSRATLERHWHAFDRAVADHPHLICYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VSG EL + AG +P K +F+G GK ++ +A +
Sbjct: 61 ANSNIAVLNVLARLGSGFDIVSGGELLRVIEAGGEPAKVVFSGVGKTAAEMEMALNLDIL 120
Query: 186 -VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + +VA RI GK V LRINPDVD HPY++TG K++KFGI E+ +
Sbjct: 121 CFNVESAAELEQLNIVAGRI-GKIAPVSLRINPDVDAGTHPYISTGLKDNKFGIAMEQAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A PN L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GG
Sbjct: 180 AIFARAAALPN-LEIKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIHIEHFDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P+P + E + SR L LI EPGR++ AN V V +K+N
Sbjct: 239 GLGVSY--GDETPPQPDVYAAALLERLGSRKLKLIFEPGRAIAANAGIFVTQVLYLKSND 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++DG+M +LIRP+LY A+Q+I + P+D + +D+VGP+CE+ DFLGK+REL
Sbjct: 297 DKHFALVDGAMNDLIRPALYSAWQNI--IPVKPRDGKTLNYDIVGPICETGDFLGKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L V +GAY +M+S YN + R E V + +I
Sbjct: 355 NLA-AGDYLAVCSSGAYGFTMSSNYNSRPRSAEVMVDGEQAFVI 397
>gi|424886590|ref|ZP_18310198.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2012]
gi|393175941|gb|EJC75983.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2012]
Length = 422
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 229/393 (58%), Gaps = 9/393 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRIFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G +D+++IGGGLGI
Sbjct: 183 AHAAKLAGIEVTGIDMHIGSQITELQPFDDAFRLLHDLVATLRADGHTIDHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G + V AGAY A TYN ++ PE V+
Sbjct: 363 PGDLIAVSTAGAYGAVQAGTYNSRLLVPEVLVK 395
>gi|218885457|ref|YP_002434778.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756411|gb|ACL07310.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 416
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 230/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G LY E V V + + + P Y+YS + R+ +A+ A G+ + Y++
Sbjct: 2 HHFQYR-EGQLYAEGVPVHE-LASRYGTPLYVYSAATLRRHFQAFDSAFTGVGHLTCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG- 183
KAN+N +L L +G G +VSG EL AL AG + +++G GK +D + AA E
Sbjct: 60 KANSNVHLLRLLADMGAGMDIVSGGELHRALAAGVPGQRIVYSGVGKQ-DDEIRAALEAD 118
Query: 184 -VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ NV+S +LE I + G+ + +RINPDVDP+ HPY++TG +N+KFG+ E+
Sbjct: 119 ILLFNVESVQELERINAVAGQMGRTARIGVRINPDVDPKTHPYISTGMRNNKFGLDMEQA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ PN ++ VG CH+GS +T + F +A ++++ +++R G + +L++G
Sbjct: 179 LAAYLLARDLPN-VQPVGIDCHIGSQLTTLAPFLEALDRVLDFHERLRDLGLAITHLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P PR + V E + R L+LI+EPGR + N LV V K+
Sbjct: 238 GGLGITYGEE--TPPHPREFGEAVSERLRGRGLSLILEPGRVIAGNAGILVGRVIYTKST 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+KNFI+ D +M +L+RPSLY +Y I V PA +D EI+ DVVGP+CES DFL ++R
Sbjct: 296 PSKNFIIADAAMNDLVRPSLYQSYHRIAEVQPAGRD-EITA-DVVGPICESGDFLARDRI 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +G L V AGAY SM+S YN + R E V
Sbjct: 354 LPDMQQGELLAVFSAGAYGFSMSSNYNSRPRAAEVLV 390
>gi|337288255|ref|YP_004627727.1| diaminopimelate decarboxylase [Thermodesulfobacterium sp. OPB45]
gi|334901993|gb|AEH22799.1| diaminopimelate decarboxylase [Thermodesulfobacterium geofontis
OPF15]
Length = 418
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 225/396 (56%), Gaps = 8/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K +G LYCE+V V+ ++E V P Y+YS I R+ + ++++ + +I Y++
Sbjct: 2 HYFGYK-NGELYCEEVPVKKIIEEV-GTPVYIYSAKTIRRHYKVFEESFSEVEHLICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N I+ LR+LG GA +VS EL+ AL+AG P K +F+G GK E++ A +
Sbjct: 60 KANSNIAIISLLRQLGSGADVVSAGELKRALKAGVPPKKIVFSGVGKTPEEIEFALSVDI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+S +LE + ++ KK LRINPDVDPQ HPY++TG K SKFGI E
Sbjct: 120 LMFNVESLEELEVLGEIAKKLNKKAPFALRINPDVDPQTHPYISTGLKKSKFGIPEEFAI 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
K +P L+ VG H+GS IT + F +A + + + GFE+ YL+IGG
Sbjct: 180 SAYKKAKKNPY-LQPVGIDAHIGSQITSLAPFVEALNRLKKIWEALIDLGFELKYLDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P+ D + + +I+EPGR ++ N LV V K N
Sbjct: 239 GLGIIYDDEEP--PLPQEYADAIIKEGKDLKATIILEPGRVIVGNAGILVTKVLYTKENT 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D M +LIRP+ Y AY I V +++E DVVGP+CE++DF K+R+L
Sbjct: 297 LKKFVIVDAGMNDLIRPAFYQAYHKI--VPVEEKNSEYEVVDVVGPICENSDFFAKDRKL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P RG L + AGAY M+S YN + R PE V
Sbjct: 355 PKLQRGDFLAIMSAGAYGFVMSSNYNSRPRVPEVLV 390
>gi|452943720|ref|YP_007499885.1| diaminopimelate decarboxylase [Hydrogenobaculum sp. HO]
gi|452882138|gb|AGG14842.1| diaminopimelate decarboxylase [Hydrogenobaculum sp. HO]
Length = 419
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 229/388 (59%), Gaps = 7/388 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V ++++ + P Y+YS I +AYK+A E ++ YA+KAN N I++
Sbjct: 16 LFLENVDLEELAKEF-GTPLYVYSASYIKDKAKAYKEAFE--DTDFHYALKANGNLSIVK 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L+ G GA +VSG ELR A++AG +P+K ++ G GK +++L A + + NV+S +
Sbjct: 73 LLKDEGFGADIVSGGELRKAIKAGIEPSKIVYAGVGKTIQELKAAVEAEIKMFNVESSME 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + ++ GKK NV +R+NPDVDP+ HPY++TG K SKFG+ + K +
Sbjct: 133 LDILNDIAKNLGKKANVAIRVNPDVDPKTHPYISTGMKKSKFGV-DIKTAYKEYQYAKSL 191
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G HCH+GS + V + +A+ + DK+ GF++ Y+++GGGLGI Y
Sbjct: 192 KHLNVIGIHCHIGSQLLDVSPYIEASEKVRELYDKLVKDGFDIKYIDMGGGLGIK-YKPE 250
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P++L + + L +EPGRS++ N L+ V +K G K+F+++D
Sbjct: 251 EQEPHPKDLKEALYPAFKDIKARLCLEPGRSMVGNAGILITEVQFLKDKGHKHFVIVDAG 310
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPS+Y AY HI + + + K D+VGP+CE+ DFL ++RE+ DRG L
Sbjct: 311 MNDLIRPSIYGAYHHI-VPTHNKYKEDFIKTDIVGPICETGDFLAQDREIHKVDRGDYLA 369
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRS 461
V AGAY SM+S YN++ R E V +
Sbjct: 370 VLSAGAYGFSMSSHYNIRPRAAEVLVEN 397
>gi|313669199|ref|YP_004049483.1| diaminopimelate decarboxylase [Neisseria lactamica 020-06]
gi|313006661|emb|CBN88127.1| diaminopimelate decarboxylase [Neisseria lactamica 020-06]
Length = 406
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYRD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIESVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|389606709|emb|CCA45621.1| diaminopimelate decarboxylase [Neisseria meningitidis alpha522]
Length = 414
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 232/391 (59%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y +
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQN 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|384082876|ref|ZP_09994051.1| diaminopimelate decarboxylase [gamma proteobacterium HIMB30]
Length = 418
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 230/395 (58%), Gaps = 17/395 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V V+ + P ++YSK + R+ AY +L + +I Y +KAN+N
Sbjct: 8 DGALFAEDVPVS-VIASQFGTPCFIYSKATLVRHFRAYADSLTDIPHLICYGMKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L K G G +VS EL ++AG DP K +F+G GK +L A + G+ NV+S
Sbjct: 67 VLQTLAKEGAGFDIVSIGELERVIKAGGDPAKVVFSGVGKQDFELRRALEVGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE++ + GK V LRINPDVDP+ HPY++TG K +KFGI +E DA+
Sbjct: 127 LAELEHLNAIAIEMGKVAPVSLRINPDVDPKTHPYISTGLKANKFGIAHE------DAIA 180
Query: 251 AHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ +L VG CH+GS +T V ++ +++ ID++ G +++++++GGGL
Sbjct: 181 AYRRSSELPGLSPVGIDCHIGSQLTDVSPLIESLDKLLSLIDQLADIGIQLEHIDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y P P + V+E + RNL L++EPGRS+ AN V KTN +
Sbjct: 241 GVTYDQE--TPPHPSEYLALVKERLAGRNLTLVLEPGRSIAANAGIFVTKTILTKTNQDQ 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEI-SKFDVVGPVCESADFLGKERELP 424
+F ++DG+M +LIRPSLY A+Q+I V + +I + FD+VGPVCES DFLGK R L
Sbjct: 299 HFAIVDGAMNDLIRPSLYGAWQNIVPVDTTEKPGQIEASFDIVGPVCESGDFLGKARTLR 358
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M S YN + R PE V
Sbjct: 359 IQE-GDLLAVRSAGAYGFVMGSNYNTRGRAPEILV 392
>gi|381401435|ref|ZP_09926338.1| diaminopimelate decarboxylase [Kingella kingae PYKK081]
gi|380833585|gb|EIC13450.1| diaminopimelate decarboxylase [Kingella kingae PYKK081]
Length = 434
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 228/391 (58%), Gaps = 20/391 (5%)
Query: 77 CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHL 136
CE+V + + P Y+YS+ +T+ AY+QA E S+I YAIKAN+N I++H
Sbjct: 30 CENVSFEQLANQF-GTPLYVYSENALTQAYRAYEQAFESSKSLICYAIKANSNLSIIQHF 88
Query: 137 RKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLE 195
KLG G VSG E+ L AG K IF+G GK + ++ A G+ NV+S +L+
Sbjct: 89 AKLGSGFDTVSGGEIARVLAAGGAANKIIFSGVGKSVAEMEFALNAGIKCFNVESLPELD 148
Query: 196 NI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
+ VA+R+ GK V LRINPDVD + HPY++TG K +KFGI DA +A+ +
Sbjct: 149 RLNEVAARL-GKIAPVSLRINPDVDAKTHPYISTGLKENKFGI------AMADAERAYQH 201
Query: 255 -----ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
L +VG CH+GS +T + +A M+ +DK+ AQG + ++++GGG+GI Y
Sbjct: 202 ASSLQHLNVVGIDCHIGSQLTDLSPLVEACERMLLLVDKLAAQGIVLQHIDLGGGVGIVY 261
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P V++L+ R+L L++EPGRSL+ N L+ V +K KNF++
Sbjct: 262 KDEQT--PDLAEYAQAVQKLLAGRDLGLVLEPGRSLVGNAGTLLTRVEFIKQGEEKNFVI 319
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L+RP+LY AY HIE S Q A + DVVGP+CE+ DFL + RE+ ++G
Sbjct: 320 VDAAMNDLMRPALYQAYHHIENASDKKQPAMFA--DVVGPICETGDFLAQNREI-VAEQG 376
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L+V AGAY SMAS YN + R E V+
Sbjct: 377 DVLLVRSAGAYGASMASNYNTRCRSVEVLVQ 407
>gi|293602585|ref|ZP_06685029.1| diaminopimelate decarboxylase [Achromobacter piechaudii ATCC 43553]
gi|292819012|gb|EFF78049.1| diaminopimelate decarboxylase [Achromobacter piechaudii ATCC 43553]
Length = 429
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 152/399 (38%), Positives = 233/399 (58%), Gaps = 11/399 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + + LY EDV + + + P Y+YS+ + E Y+ A+ L ++ Y +
Sbjct: 14 HPYFQYRNNVLYAEDVPLDHLAHGL-GTPLYVYSRAALKAAWETYRSAIGPLPVLVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ +LG G +VSG EL+ AL G DP K +F+G GK + ++ A GV
Sbjct: 73 KANSNLAVLKEFVRLGAGFDIVSGGELKRALAVGADPAKIVFSGVGKQVWEMRDALAAGV 132
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + ++ G + V LR+NPDV+ Q HPY++TG K +KFGI E
Sbjct: 133 KCFNVESEGELRRLSDVAQEMGMRAPVSLRVNPDVNAQTHPYISTGLKENKFGIAIESAL 192
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+A P +++VG CH+GS +T + + DA +++ I ++ G + +L++GG
Sbjct: 193 GVYLTAQALPG-VEIVGVDCHIGSQLTDISPYFDALEKLLDLIGQLDQAGIRIAHLDLGG 251
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVK 360
GLGI Y T P P+ L+D V E + +R +L+LI+EPGRSL+ N L+ V +K
Sbjct: 252 GLGIRY--TDETPPSPKALLDRVFERLNARGQGHLHLILEPGRSLVGNAGVLLTTVQYLK 309
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
+NF ++D +M +L+RP+LYDAY ++ + P D + ++D+VGPVCESAD+L K
Sbjct: 310 HADARNFAIVDAAMNDLLRPALYDAYHGVQPLRPRAGD--LVEYDIVGPVCESADWLAKG 367
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L +G L V AGAY M+MAS YN + R E V
Sbjct: 368 RALAI-QQGDVLAVESAGAYSMAMASNYNTRARAAEVMV 405
>gi|251772324|gb|EES52892.1| diaminopimelate decarboxylase [Leptospirillum ferrodiazotrophum]
Length = 413
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 223/389 (57%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E++ V++++E E P Y+YSK + + AY++A +++ YA+KAN N
Sbjct: 8 NGRLFVENLPVEEIVEK-EGSPLYIYSKKALVERIRAYREAFAAHPTLVAYAMKANGNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL L K G G +VSG EL A +AG K +F G GK E++ A +E + + NV+S
Sbjct: 67 ILSLLAKEGAGIDVVSGGELFRARKAGVPADKIVFAGVGKSREEIAYALKEKILMFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L++I + G + V LR+NPDVDP+ HPY++TG K SKFGI E+
Sbjct: 127 QDELDHISEVAVALGTQAPVALRVNPDVDPKTHPYISTGMKKSKFGIPVERAVAEYQRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+VG H H+GS +T++ FRDA ++ + ++ G +V +L++GGGLGI Y
Sbjct: 187 TLPG-IKIVGIHQHIGSQLTEIAPFRDAFDRLLAFHGELSRAGIKVTHLDLGGGLGIRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P +L V V + L++EPGRS++ N LV V K K+F++
Sbjct: 246 SEEP--PSPADLAALVLPRVKDLGVTLVLEPGRSIVGNAGILVTRVLYRKNTAVKSFVIG 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +L+RPSLY A H +L+ E K D+VGP+CE+ DFL +RE+P G
Sbjct: 304 DAGMNDLLRPSLYGA--HHDLLPVKETKGETIKGDLVGPICETGDFLATDREMPDFAAGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY SMAS YN + RP E V
Sbjct: 362 LIAVMSAGAYGFSMASNYNARPRPAEILV 390
>gi|241206546|ref|YP_002977642.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860436|gb|ACS58103.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 422
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/393 (38%), Positives = 228/393 (58%), Gaps = 9/393 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLGI
Sbjct: 183 AHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLHDLVATLRADGHTIHHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G + V AGAY A TYN ++ PE VR
Sbjct: 363 PGDLMAVSTAGAYGAVQAGTYNSRLLVPEVLVR 395
>gi|421589426|ref|ZP_16034569.1| diaminopimelate decarboxylase [Rhizobium sp. Pop5]
gi|403705619|gb|EJZ21160.1| diaminopimelate decarboxylase [Rhizobium sp. Pop5]
Length = 422
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 232/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGILHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADVDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK +++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPAERIMFSGVGKTPQEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVNAGKKAPVSFRINPDVDARTHAKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLG+
Sbjct: 183 AHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLRDLVATLRADGHTIHHVDIGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCRIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLMAVSTAGAYGAVQAGTYNSRLLVPEVLVKGGDFHVIRP 404
>gi|308051401|ref|YP_003914967.1| diaminopimelate decarboxylase [Ferrimonas balearica DSM 9799]
gi|307633591|gb|ADN77893.1| diaminopimelate decarboxylase [Ferrimonas balearica DSM 9799]
Length = 414
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 227/388 (58%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L E+V + +V P Y+YS+ I R+ A+ +A+ +I YA+KAN+N +
Sbjct: 9 GALSAEEVPLAEVAAAY-GTPCYVYSRATIERHFHAFDRAVGDHPHLICYAVKANSNLAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL ++AG DP K +F+G GK +++ A Q G++ NV+SE
Sbjct: 68 LNLLARLGSGFDIVSGGELARVIQAGGDPGKVVFSGVGKTADEMRQALQAGIYCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + G K V LRINPDVD HPY++TG K +KFGI + + +
Sbjct: 128 AELERLNEVAGAMGLKAPVSLRINPDVDAGTHPYISTGLKENKFGIAMARAEQVFQRAAS 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L++ GA CH+GS +T + F DA ++ +D++ G + +L++GGGLG+ Y
Sbjct: 188 LPN-LQVKGADCHIGSQLTTLPPFIDALDRLLALVDRLAELGIVLSHLDVGGGLGVRYDE 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P +RE + +R L LI+EPGR+++AN L+ V +KT ++F ++D
Sbjct: 247 ESP--PLPDEYARALREHLGNRPLTLILEPGRAIMANAGVLLTEVAYLKTGEDRHFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRPSLY A+Q I + P+D +DVVGPVCE+ DFLGK REL + G
Sbjct: 305 AAMNDLIRPSLYSAWQAI--IPVEPRDGPHQTYDVVGPVCETGDFLGKGRELCI-EPGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +MAS YN + R E V
Sbjct: 362 LAVRSSGAYGFTMASNYNSRPRAAEVMV 389
>gi|319778683|ref|YP_004129596.1| diaminopimelate decarboxylase [Taylorella equigenitalis MCE9]
gi|317108707|gb|ADU91453.1| Diaminopimelate decarboxylase [Taylorella equigenitalis MCE9]
Length = 428
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 160/403 (39%), Positives = 235/403 (58%), Gaps = 10/403 (2%)
Query: 62 PVEHCFSKKADGFLYCEDVRVQDVMETVE-KRPFYLYSKPQITRNVEAYKQALEGL-NSI 119
PV F + LY E + V+++ + + PF LYSK I + YK L NS+
Sbjct: 5 PVSSPFIAYKNDKLYIESLSVKEIQNRLSTESPFVLYSKKAIESAWDGYKNILGKYPNSL 64
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
I YA+KAN+N +L+ LG G +VSG EL+ L G D K IF+G GK ++ LA
Sbjct: 65 ICYAVKANSNLSLLKLFVSLGAGFDIVSGGELKRCLEVGADTNKIIFSGVGKQSWEIKLA 124
Query: 180 AQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ G+ NV+SEF+LENI +R G K + LR+NPD+D + HPY++TG K +KFGI
Sbjct: 125 LESGIKCFNVESEFELENIATIARELGLKARISLRVNPDIDARTHPYISTGLKENKFGID 184
Query: 239 -NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVD 297
+ L +L A A + L++VG CH+GS I +++ + DAA ++ I +IR+ G +
Sbjct: 185 FSRALDVYLYA--ASIDALEIVGIDCHIGSQILEIEPYLDAADRVIELIRQIRSHGIYLS 242
Query: 298 YLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
+L+IGGG+GI Y + + + R ID ++ +I+EPGRSL+ N+ LV V
Sbjct: 243 HLDIGGGVGIRYSNENPIDIVCLRASIDAKLRSAGLEHMLVIMEPGRSLVGNSAILVAQV 302
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
G+K KNF +I+ M +LIRPSLY+AY + V + E +K+D+VGP+CE+ D+
Sbjct: 303 LGIKKTDYKNFAIINAGMNDLIRPSLYEAYHGVLPVQ--IRKGEATKYDIVGPICETGDW 360
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L K+R+L G +V+ GAY SMAS YN + EY V
Sbjct: 361 LAKDRKL-VLQAGDLIVIESVGAYGTSMASNYNSRPFLAEYLV 402
>gi|86359380|ref|YP_471272.1| diaminopimelate decarboxylase [Rhizobium etli CFN 42]
gi|86283482|gb|ABC92545.1| diaminopimelate decarboxylase protein [Rhizobium etli CFN 42]
Length = 422
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 231/402 (57%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGILYAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADVDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK +++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPANRIMFSGVGKTPQEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V RINPDVD + H ++TG K +KFGI ++ + A+
Sbjct: 127 EPELEILNQRAVNAGKTAPVSFRINPDVDAKTHAKISTGKKENKFGISWDRAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLG+
Sbjct: 183 AHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLSDLVATLRADGHSIHHVDIGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + V AGAY A TYN ++ PE V+ +I P
Sbjct: 363 PGDLMAVSTAGAYGAVQAGTYNSRLLVPEVLVKGSDFHVIRP 404
>gi|15600470|ref|NP_253964.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO1]
gi|418587261|ref|ZP_13151293.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa MPAO1/P1]
gi|418592616|ref|ZP_13156483.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa MPAO1/P2]
gi|421519849|ref|ZP_15966520.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO579]
gi|12230897|sp|P19572.2|DCDA_PSEAE RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|9951590|gb|AAG08662.1|AE004940_6 diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO1]
gi|375042014|gb|EHS34681.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa MPAO1/P1]
gi|375048549|gb|EHS41069.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa MPAO1/P2]
gi|404345768|gb|EJZ72120.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO579]
Length = 415
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + D L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DAELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAAPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|405382377|ref|ZP_11036164.1| diaminopimelate decarboxylase [Rhizobium sp. CF142]
gi|397321178|gb|EJJ25599.1| diaminopimelate decarboxylase [Rhizobium sp. CF142]
Length = 422
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 227/391 (58%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGILYAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFGDVDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPANRIMFSGVGKTPNEMDYALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEVLNQRAVRAGKKAPVSFRINPDVDARTHAKISTGKKENKFGISWERARAIYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P +++ G H+GS IT++ F DA L+ + ++ +RA G + +++IGGGLGI Y
Sbjct: 187 SLPG-IEVTGIDMHIGSQITELQPFDDAFKLLHDLVNTLRADGHNIHHVDIGGGLGIPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + N +I EPGR ++ N LV V VK G K F+++
Sbjct: 246 DENNPPPLPDAYAAIVKNQLRALNCKIITEPGRLIVGNAGILVTEVIYVKDGGEKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+AY + V + +A + DVVGPVCE+ D+L +RE+ TP G
Sbjct: 306 DGAMNDLIRPTLYEAYHEVRPVVISAANAPRIRADVVGPVCETGDYLALDREMATPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY A TYN ++ PE V+
Sbjct: 366 LLAVGTAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|333376039|ref|ZP_08467833.1| diaminopimelate decarboxylase [Kingella kingae ATCC 23330]
gi|332969020|gb|EGK08060.1| diaminopimelate decarboxylase [Kingella kingae ATCC 23330]
Length = 408
Score = 264 bits (674), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 228/391 (58%), Gaps = 20/391 (5%)
Query: 77 CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHL 136
CE+V + + P Y+YS+ +T+ AY+QA E S+I YAIKAN+N I++H
Sbjct: 4 CENVSFEQLANQF-GTPLYVYSENALTQAYRAYEQAFESSKSLICYAIKANSNLSIIQHF 62
Query: 137 RKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLE 195
KLG G VSG E+ L AG K IF+G GK + ++ A G+ NV+S +L+
Sbjct: 63 AKLGSGFDTVSGGEIARVLAAGGAANKIIFSGVGKSVAEMEFALNAGIKCFNVESLPELD 122
Query: 196 NI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
+ VA+R+ GK V LRINPDVD + HPY++TG K +KFGI DA +A+ +
Sbjct: 123 RLNEVAARL-GKIAPVSLRINPDVDAKTHPYISTGLKENKFGI------AMADAERAYQH 175
Query: 255 -----ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
L +VG CH+GS +T + +A M+ +DK+ AQG + ++++GGG+GI Y
Sbjct: 176 ASSLQHLNVVGIDCHIGSQLTDLSPLVEACERMLLLVDKLAAQGIVLQHIDLGGGVGIVY 235
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P V++L+ R+L L++EPGRSL+ N L+ V +K KNF++
Sbjct: 236 KDEQT--PDLAEYAQAVQKLLAGRDLGLVLEPGRSLVGNAGTLLTRVEFIKQGEEKNFVI 293
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L+RP+LY AY HIE S Q A + DVVGP+CE+ DFL + RE+ ++G
Sbjct: 294 VDAAMNDLMRPALYQAYHHIENASDKKQPAMFA--DVVGPICETGDFLAQNREI-VAEQG 350
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L+V AGAY SMAS YN + R E V+
Sbjct: 351 DVLLVRSAGAYGASMASNYNTRCRAVEVLVQ 381
>gi|225850923|ref|YP_002731157.1| diaminopimelate decarboxylase [Persephonella marina EX-H1]
gi|225645958|gb|ACO04144.1| diaminopimelate decarboxylase [Persephonella marina EX-H1]
Length = 426
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/387 (37%), Positives = 227/387 (58%), Gaps = 9/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE++ ++++ V PFYLYSK I ++ YK+A E N++I YA KAN+N IL+
Sbjct: 16 LFCENIPIKEIASKV-GTPFYLYSKQAILDRIDQYKKAFEEYNTLICYAAKANSNLSILK 74
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ G +VSG EL A +AGF K ++ G GK +L A +E + NV+SE +
Sbjct: 75 IFEENDLGLDIVSGGELYKAKKAGFPSNKIVYAGVGKTDFELEYAIRENILSFNVESEME 134
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ + + K V + +R+NPDVDP+ HPY++TG + SKFGI +E L + AVK
Sbjct: 135 IDVLDELAEKLNKTVRISIRVNPDVDPKTHPYISTGLRKSKFGIDIDEALNVYRKAVKK- 193
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ ++G HCH+GS I ++ + +A + +++ +G E+ + +IGGG+GI Y
Sbjct: 194 -KNIDVIGIHCHIGSQIMEISPYVEAVEKTAELVFRLKKEGIELQHFDIGGGIGIRYRPE 252
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P +L V +V + L LIIEPGRSLI L+ V +K G K+FI++D
Sbjct: 253 DNP-PTPEDLAKAVIPIVRTTGLRLIIEPGRSLIGEAGALITQVVFLKNKGDKHFIIVDS 311
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +L+RP++Y+AY HI +S ++ ++ D+VGP+CE+ DF +RE+ R L
Sbjct: 312 GMNDLLRPAMYNAYHHI--LSVEKKERKVVA-DIVGPICETGDFFALDREIDDVQRKDYL 368
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY SM+S YN++ R E V
Sbjct: 369 AVMSAGAYGSSMSSNYNVRPRAAEVLV 395
>gi|347731016|ref|ZP_08864123.1| diaminopimelate decarboxylase [Desulfovibrio sp. A2]
gi|347520217|gb|EGY27355.1| diaminopimelate decarboxylase [Desulfovibrio sp. A2]
Length = 416
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 226/389 (58%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV V+++ P Y+YS + R+ +A+ A + + Y++KAN+N
Sbjct: 8 EGELHAEDVPVRELAARFGT-PLYVYSSATLRRHFQAFDSAFTDVTHLTCYSVKANSNVH 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L L +LG G +VSG EL AL AG P + +++G GK +++ A G+ + NV+S
Sbjct: 67 LLRLLAELGAGMDIVSGGELHRALAAGVAPDRIVYSGVGKRDDEIRAALDAGILLFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE I + G+ + +RINPDVDP+ HPY++TG +N+KFG+ E+ +
Sbjct: 127 VQELERIDAVAGEMGRTARIGVRINPDVDPKTHPYISTGMRNNKFGLDMEQALAAYLLAR 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN + VG CH+GS +T + F +A ++++ +++R G + +L++GGGLGI Y
Sbjct: 187 DLPN-VTPVGIDCHIGSQLTTLAPFLEALDRVLDFHERLRDLGLPITHLDLGGGLGITYG 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P PR + V + R L+LI+EPGR + N LV V K+ +KNFI+
Sbjct: 246 EE--TPPHPREFGEAVSARLRGRGLSLILEPGRVIAGNAGILVGEVVYTKSTPSKNFIIA 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPSLY +Y I V PA + EI+ DVVGP+CES DFL ++R LP RG
Sbjct: 304 DAAMNDLVRPSLYQSYHRIAEVKPAGR-GEITA-DVVGPICESGDFLARDRILPDMRRGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY SM+S YN + R E V
Sbjct: 362 LLAVFSAGAYGFSMSSNYNSRPRAAEVLV 390
>gi|338736905|ref|YP_004673867.1| diaminopimelate decarboxylase [Hyphomicrobium sp. MC1]
gi|337757468|emb|CCB63288.1| diaminopimelate decarboxylase [Hyphomicrobium sp. MC1]
Length = 426
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 4/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K+ G L+ EDV + + + V PFY YS + R+ E +A +G N++I +A+
Sbjct: 2 HHFQYKS-GLLHAEDVSLARIADEV-GTPFYCYSTATLVRHYEVLSKAFKGQNALICFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ + +LG G +VS ELR A AG +K IF G GK ++ A +EG+
Sbjct: 60 KANSNQAVLKTMARLGAGMDVVSEGELRRARAAGVPASKIIFAGVGKTRGEMAYALEEGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L+ + + G+ ++ +R+NPDVD + H ++TG +KFG+ +
Sbjct: 120 LGFNVESEPELKALSEVANAMGRTASIAIRVNPDVDAKTHAKISTGKAENKFGVPYADAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +K+ G H H+GS IT + FRDA LM + ++ G +++L+IGG
Sbjct: 180 RLYAEAAKLPG-IKISGIHMHIGSQITDLAPFRDAFRLMADLARDLKGDGLGLEHLDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y + P P V+E + L +++EPGR ++ N LV VT VK
Sbjct: 239 GLGVPYRGANDIPPTPDEYAAVVKETLGPLGLKIVMEPGRMIVGNAGVLVTKVTYVKEGT 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F +ID +M +LIRP+LY+AY I V A + + D+VGPVCE+ DFL ++R L
Sbjct: 299 DKTFTIIDAAMNDLIRPTLYEAYHDIWPVVEARSELAPIQQDIVGPVCETGDFLAEDRAL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P + G + V AGAY M+STYN ++ PE V
Sbjct: 359 PPLEAGDLISVMTAGAYGAVMSSTYNSRLLIPEVLV 394
>gi|374301361|ref|YP_005053000.1| diaminopimelate decarboxylase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554297|gb|EGJ51341.1| diaminopimelate decarboxylase [Desulfovibrio africanus str. Walvis
Bay]
Length = 420
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 222/396 (56%), Gaps = 7/396 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ ED+ V+D+ P Y+YSK +R+ +A+ A L I Y++KAN+N
Sbjct: 8 NGRLHAEDIPVEDLARQF-GTPLYVYSKATFSRHFQAFDSAFSALPHITCYSVKANSNLC 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L L LG G +VSG EL AL+AG P K +++G GK E++ A G+ + NV+S
Sbjct: 67 VLRLLASLGAGMDIVSGGELHRALKAGVSPEKIVYSGVGKRPEEIRQALDAGILMFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I + +G+ + LRINPDVDP+ HPY++TG K +KFG+ E K
Sbjct: 127 REELRTISAIASESGRIARISLRINPDVDPKTHPYISTGMKKNKFGLDMETSLETYRMAK 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P ++ VG CH+GS +T ++ F +A +V + K+R G ++ YL++GGGLGI Y
Sbjct: 187 GLPG-IEPVGIDCHIGSQLTSIEPFLEALDKLVEFYGKLREMGIDIRYLDLGGGLGITYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + E + L +I+EPGR + N LV V K+ +K+F+++
Sbjct: 246 EEEP--PHPEAFGKALTERLKGLPLTIILEPGRVIAGNAGILVTKVLYTKSTPSKDFVIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPSLY ++ I V + DVVGP+CES DFL ++RELP + G
Sbjct: 304 DAAMNDLVRPSLYGSFHRIAEV--VEHNRPKINVDVVGPICESGDFLARDRELPNVESGE 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466
L AGAY +M+S YN + R E V ++++
Sbjct: 362 LLAAFSAGAYGFAMSSQYNSRPRAAEVMVDGEVTVL 397
>gi|385324919|ref|YP_005879358.1| diaminopimelate decarboxylase [Neisseria meningitidis 8013]
gi|261393306|emb|CAX50938.1| diaminopimelate decarboxylase (DAP decarboxylase) [Neisseria
meningitidis 8013]
Length = 406
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 232/393 (59%), Gaps = 22/393 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+G
Sbjct: 175 RRAAQQPN-LKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDED--VPDLGAYAQAVQKLMGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC- 348
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 349 EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|349610492|ref|ZP_08889838.1| diaminopimelate decarboxylase [Neisseria sp. GT4A_CT1]
gi|348609863|gb|EGY59582.1| diaminopimelate decarboxylase [Neisseria sp. GT4A_CT1]
Length = 406
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 155/390 (39%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTEAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYRDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 --TVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLARVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V P P A D+VGP+CE+ DFLGK+R L + G
Sbjct: 298 AMNDLMRPALYDAYHHIEAVEPKNIPPLTA-----DIVGPICETGDFLGKDRTLAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV+ AGAY SMAS YN + R E V
Sbjct: 352 DLLVIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|399036420|ref|ZP_10733490.1| diaminopimelate decarboxylase [Rhizobium sp. CF122]
gi|398065952|gb|EJL57558.1| diaminopimelate decarboxylase [Rhizobium sp. CF122]
Length = 422
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 227/399 (56%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E+V V ++ + V PFY YS + R+ + +A +++++ YA+KAN+N
Sbjct: 8 DGVLYAENVPVPEIAKAV-GTPFYCYSTATLERHYRVFAKAFSEVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAAGIPASRIMFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEILNQRAVKAGKKAPVSFRINPDVDARTHAKISTGKKENKFGISWERARAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P +++ G H+GS IT++ F DA L+ + +RA G ++ ++++GGGLGI Y
Sbjct: 187 SLPG-IEVTGIDMHIGSQITELQPFEDAFKLLRELVSTLRADGHDIHHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V+ + N ++ EPGR ++ N LV V VK G K F+++
Sbjct: 246 DDNNPPPHPEAYAEIVKSQLRELNCKIVTEPGRLIVGNAGILVTEVIYVKDGGKKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+A+ I V + +A K DVVGPVCE+ DFL +RE+ P G
Sbjct: 306 DGAMNDLIRPTLYEAHHEIRPVVISAANAPRIKADVVGPVCETGDFLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY A TYN ++ PE V+ +I P
Sbjct: 366 LFAISSAGAYGAVQAGTYNSRLLVPEVLVKGSDFHVIRP 404
>gi|239906765|ref|YP_002953506.1| diaminopimelate decarboxylase [Desulfovibrio magneticus RS-1]
gi|239796631|dbj|BAH75620.1| diaminopimelate decarboxylase [Desulfovibrio magneticus RS-1]
Length = 412
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 228/398 (57%), Gaps = 12/398 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + G LY EDV V ++ P Y+YS + R+ A+ A L + Y++
Sbjct: 2 HHFEYRG-GELYAEDVPVSTLVAAY-GTPLYVYSAATLRRHFRAFDSAFAALPHLTCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +G G +VSG EL AL AG DP K +++G GK ++ A + G+
Sbjct: 60 KANSNLSVLKTLAAMGAGMDIVSGGELYRALAAGVDPQKIVYSGVGKRASEIEEALKAGI 119
Query: 185 FV-NVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEK 241
+ NV+S +LE + +ASR+ GK V LRINP+VDP+ HPY++TG K +KFG+ +
Sbjct: 120 LMFNVESTGELERLSAIASRL-GKTAQVSLRINPNVDPKTHPYISTGLKKNKFGLDIDHS 178
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
L + A++ P + VG CH+GS +T + F +A ++ + DK+ A G E YL++
Sbjct: 179 LAAYAKAMEL-PG-VTPVGIDCHIGSQLTSISPFLEALDKILAFRDKLTAMGIETRYLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y P P + + + + LI+EPGR ++ N LV K
Sbjct: 237 GGGLGIQYNEEEP--PHPSEFGQALTKALGDLPITLILEPGRVIVGNAGILVTEAVYTKK 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+K+FI++D +M +LIRPSLYD+Y I V PA + E+S DVVGP+CES DFL ++R
Sbjct: 295 TPSKDFIIVDAAMNDLIRPSLYDSYHAIREVRPAGR-PELS-VDVVGPICESGDFLARDR 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP G L V AGAY +M+S YN + R E V
Sbjct: 353 ALPAVAPGEHLAVFSAGAYGFTMSSNYNSRPRAAEILV 390
>gi|399115303|emb|CCG18102.1| diaminopimelate decarboxylase [Taylorella equigenitalis 14/56]
Length = 428
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 234/403 (58%), Gaps = 10/403 (2%)
Query: 62 PVEHCFSKKADGFLYCEDVRVQDVMETVE-KRPFYLYSKPQITRNVEAYKQALEGL-NSI 119
PV F + LY E + V+++ + + PF LYSK I + YK L NS+
Sbjct: 5 PVSSPFIAYKNDKLYIESLSVKEIQNRLSTESPFVLYSKKAIESAWDGYKNILGKYPNSL 64
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
I YA+KAN+N +L+ LG G +VSG EL+ L G D K IF+G GK ++ LA
Sbjct: 65 ICYAVKANSNLSLLKLFVSLGAGFDIVSGGELKRCLEVGADTNKIIFSGVGKQSWEIKLA 124
Query: 180 AQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ G+ NV+SEF+LENI +R G K + LR+NPD+D + HPY++TG K +KFGI
Sbjct: 125 LESGIKCFNVESEFELENIATIARELGLKARISLRVNPDIDARTHPYISTGLKENKFGID 184
Query: 239 -NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVD 297
+ L +L A A + L++VG CH+GS I +++ + DAA ++ I +IR+ G +
Sbjct: 185 FSRALDVYLYA--ASIDALEIVGIDCHIGSQILEIEPYLDAADRVIELIKQIRSHGIYLS 242
Query: 298 YLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
+L+IGGG+GI Y + + + R ID ++ +I+EPGRSL+ N+ LV V
Sbjct: 243 HLDIGGGVGIRYSNENPIDIVCLRASIDAKLRSAGLEHMFVIMEPGRSLVGNSAILVAQV 302
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
G+K KNF +I+ M +LIRPSLY+AY + V + E +K+D+VGP+CE+ D+
Sbjct: 303 LGIKKTDYKNFAIINAGMNDLIRPSLYEAYHGVLPVQ--IRKGEATKYDIVGPICETGDW 360
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L K+R+L G + + GAY SMAS YN + EY V
Sbjct: 361 LAKDRKL-VLQAGDLIAIESVGAYGTSMASNYNSRPFLAEYLV 402
>gi|148262316|ref|YP_001229022.1| diaminopimelate decarboxylase [Geobacter uraniireducens Rf4]
gi|146395816|gb|ABQ24449.1| diaminopimelate decarboxylase [Geobacter uraniireducens Rf4]
Length = 417
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/401 (38%), Positives = 232/401 (57%), Gaps = 14/401 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K LY EDV ++D++ V P Y+YS+ + R+ +A +A + I Y++
Sbjct: 2 HHFQYKGKE-LYAEDVAIKDIVAKV-GSPVYIYSQATLERHFKAMDEAFAAVPHTICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++++ LG G +VSG EL AL+AG DP K +++G GK +++ A G+
Sbjct: 60 KANSNLAVVKNFINLGGGVDIVSGGELYRALKAGVDPQKVVYSGVGKKDDEIEYALNTGI 119
Query: 185 FV-NVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ NV+SE +L I +ASR+ GKK + +R+NPDVDPQ HPY+ TG KN+KFGI E+
Sbjct: 120 LMFNVESEQELTRISEIASRM-GKKAGIAIRVNPDVDPQTHPYITTGLKNAKFGITIERA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
K P ++++G CH+GS +TKV F DA + N I+ ++ G + Y ++G
Sbjct: 179 IEEYRRAKDLPG-IEILGIDCHIGSQLTKVTPFVDAIKKLKNVINTLKGMGISLKYFDLG 237
Query: 303 GGLGIDYYHTGAVLPKP--RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
GGLGI Y LP ++ ++L L+L+ EPGR+L+ N LV K
Sbjct: 238 GGLGIQYNDEAPPLPADYGTEILAETKDL----GLHLLFEPGRNLVGNAGILVATCLYTK 293
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNFI+ID M +L RP+LY +Y ++ V QD I D+VGP+CES DFL K+
Sbjct: 294 QRDEKNFIMIDAGMNDLARPALYGSYHGVKPVV-NDQDGVIVA-DIVGPICESGDFLAKD 351
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
RE+P +G + AGAY +M+S+YN + R E V+
Sbjct: 352 REVPMFKQGDMMAFMSAGAYGFAMSSSYNSRPRVAEVMVKG 392
>gi|421557561|ref|ZP_16003464.1| diaminopimelate decarboxylase [Neisseria meningitidis 80179]
gi|402334642|gb|EJU69925.1| diaminopimelate decarboxylase [Neisseria meningitidis 80179]
Length = 414
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 232/391 (59%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LRINPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|261401778|ref|ZP_05987903.1| diaminopimelate decarboxylase [Neisseria lactamica ATCC 23970]
gi|269208091|gb|EEZ74546.1| diaminopimelate decarboxylase [Neisseria lactamica ATCC 23970]
Length = 406
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK+VG CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIVGIDCHIGSQLTDLSPLVEACERILILVDSLAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LY+AY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYNAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|385341179|ref|YP_005895050.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240149]
gi|385856477|ref|YP_005902989.1| diaminopimelate decarboxylase [Neisseria meningitidis NZ-05/33]
gi|416189236|ref|ZP_11615198.1| diaminopimelate decarboxylase [Neisseria meningitidis M0579]
gi|433497531|ref|ZP_20454558.1| diaminopimelate decarboxylase [Neisseria meningitidis M7089]
gi|433499577|ref|ZP_20456581.1| diaminopimelate decarboxylase [Neisseria meningitidis M7124]
gi|325135569|gb|EGC58187.1| diaminopimelate decarboxylase [Neisseria meningitidis M0579]
gi|325201385|gb|ADY96839.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240149]
gi|325207366|gb|ADZ02818.1| diaminopimelate decarboxylase [Neisseria meningitidis NZ-05/33]
gi|432232136|gb|ELK87790.1| diaminopimelate decarboxylase [Neisseria meningitidis M7089]
gi|432232647|gb|ELK88284.1| diaminopimelate decarboxylase [Neisseria meningitidis M7124]
Length = 414
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 232/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D TK IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDATKTIFSGVGKNEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|402489959|ref|ZP_10836752.1| diaminopimelate decarboxylase [Rhizobium sp. CCGE 510]
gi|401811298|gb|EJT03667.1| diaminopimelate decarboxylase [Rhizobium sp. CCGE 510]
Length = 422
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 229/394 (58%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A ++ +F+G GK +++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADVPASRIMFSGVGKTPQEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH +L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLGI
Sbjct: 183 AHAAKLPGIEVNGIDMHIGSQITELQPFDDAFKLLHDLVATLRADGHTIHHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + N +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE VR
Sbjct: 363 PGDLIAVSTAGAYGAVQAGTYNSRLLVPEVLVRG 396
>gi|408376485|ref|ZP_11174090.1| diaminopimelate decarboxylase [Agrobacterium albertimagni AOL15]
gi|407749952|gb|EKF61463.1| diaminopimelate decarboxylase [Agrobacterium albertimagni AOL15]
Length = 422
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 224/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E V + ++ V PFY YS + R+ + + +A +G+++++ YA+KAN+N
Sbjct: 8 DGVLYAEGVAIPEIARAV-GTPFYCYSTATLERHYKVFAKAFDGVDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ LA + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSEGELRRALAAGIPAERIMFSGVGKTPSEMDLALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK +V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEILNQRAIKAGKKAHVSFRINPDVDAKTHAKISTGKKENKFGISYERARAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ +++ G H+GS IT + F DA L+ + +R G +D++++GGGLGI Y
Sbjct: 187 SLEG-IQVSGIDMHIGSQITDLQPFEDAFRLLRELVQTLRGDGHSIDHVDVGGGLGIPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P V++ + N ++ EPGR ++ N LV V VK G K F+++
Sbjct: 246 DDNNPPPEPDAYAKIVKDQLSELNCRIVTEPGRLIVGNAGILVTEVIYVKDGGDKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+AY I+ V + +A K DVVGPVCE+ D+L +RE+ P G
Sbjct: 306 DGAMNDLIRPTLYEAYHEIKPVVISAANAPRIKADVVGPVCETGDYLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY A TYN + PE V
Sbjct: 366 LIAVGSAGAYGAVQAGTYNTRRLVPEVLV 394
>gi|421564070|ref|ZP_16009881.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2795]
gi|421907929|ref|ZP_16337792.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha704]
gi|393290958|emb|CCI73803.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha704]
gi|402339289|gb|EJU74506.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2795]
Length = 406
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/393 (40%), Positives = 231/393 (58%), Gaps = 22/393 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LRINPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRINPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+G
Sbjct: 175 HYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDEN--VPDLGAYAQAVQKLIGTRPLKLILEPGRSLVGNAGALLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC- 348
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 349 EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|357632985|ref|ZP_09130863.1| diaminopimelate decarboxylase [Desulfovibrio sp. FW1012B]
gi|357581539|gb|EHJ46872.1| diaminopimelate decarboxylase [Desulfovibrio sp. FW1012B]
Length = 412
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/397 (38%), Positives = 228/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + G LY EDV V ++ P Y+YS + R+ A+ A GL + +++
Sbjct: 2 HHFAYRG-GELYAEDVPVSTLVAAY-GTPLYVYSAATLRRHFTAFDSAFGGLPHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +G G +VSG EL AL AG P K +++G GK ++ A G+
Sbjct: 60 KANSNLSVLKTLAAMGAGVDIVSGGELYRALAAGVAPEKIVYSGVGKRAAEIEQALTAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE-KL 242
+ NV+S +LE I ++ GK V LRINPDVDP+ HPY++TG K +KFG+ E L
Sbjct: 120 LMFNVESLGELERISAIAKRLGKTAQVSLRINPDVDPKTHPYISTGLKKNKFGLDIENSL 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ A++ PN + VG CH+GS +T + F +A ++ + +K+ A G YL++G
Sbjct: 180 AAYAKAMEL-PN-ITPVGIDCHIGSQLTSISPFLEALDKILTFREKLCAMGIVPRYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P+ + + + + + LI+EPGR ++ N LV V K
Sbjct: 238 GGLGIQYDEEDP--PHPKEFGEALTKALGDLPMTLILEPGRVIVGNAGILVTEVVYTKKT 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+K+F+++D +M +LIRPSLYD++ I V PA + E DVVGP+CES DFL ++R+
Sbjct: 296 PSKDFVIVDAAMNDLIRPSLYDSFHAIREVRPAGR--ETLNVDVVGPICESGDFLARDRD 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP G L V+ AGAY +M+S YN + R E V
Sbjct: 354 LPAVAPGELLAVYSAGAYGFTMSSNYNSRPRAAEVLV 390
>gi|187476584|ref|YP_784608.1| diaminopimelate decarboxylase [Bordetella avium 197N]
gi|115421170|emb|CAJ47654.1| diaminopimelate decarboxylase [Bordetella avium 197N]
Length = 429
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 233/408 (57%), Gaps = 13/408 (3%)
Query: 56 SQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEG 115
SQ A H K G L+ EDV + D++ P Y+YS+ + ++Y+ A+
Sbjct: 6 SQPQLAGHPHFHYKH--GVLHAEDVAL-DILAAKLGTPLYVYSRAALRAAYDSYRLAIGE 62
Query: 116 LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
++ Y +KAN+N +L+ ++G G +VSG EL+ L G DP K +F+G GK +
Sbjct: 63 RPVLVCYGMKANSNLAVLKEFARMGAGFDIVSGGELKRVLAVGGDPAKIVFSGVGKQAWE 122
Query: 176 LVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
+ A + GV NV+S +L + ++ GK V LR+NPDVD Q HPY++TG K +K
Sbjct: 123 MREALEAGVKCFNVESTAELHRLSKVAQATGKVARVSLRVNPDVDAQTHPYISTGLKENK 182
Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
FGI E+ + P L++VG CH+GS +T + + DA +++ ID++ G
Sbjct: 183 FGIAIEEALAAYQTAASLPG-LQVVGVDCHIGSQLTDISPYFDALDKLLDLIDRMAETGI 241
Query: 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCC 351
+++L++GGGLGI Y T V P P+ L+D V + +R +L+L++EPGRSL+ N
Sbjct: 242 RIEHLDLGGGLGIRY--TDEVPPSPKALLDEVFNRLQARGYGHLHLVLEPGRSLVGNAGL 299
Query: 352 LVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVC 411
L+ V +K N +NF ++D +M +L+RP+LY AY + V P +A + +DVVGPVC
Sbjct: 300 LLTTVQFLKHNDARNFAIVDAAMNDLLRPTLYQAYHGVRPVVPRAGEARV--YDVVGPVC 357
Query: 412 ESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
ES D+L KER L ++ L + AGAY M MA YN + R E V
Sbjct: 358 ESGDWLAKERALAI-EQDDVLALESAGAYGMVMAGNYNTRARAAEVMV 404
>gi|109900371|ref|YP_663626.1| diaminopimelate decarboxylase [Pseudoalteromonas atlantica T6c]
gi|109702652|gb|ABG42572.1| diaminopimelate decarboxylase [Pseudoalteromonas atlantica T6c]
Length = 415
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/391 (39%), Positives = 224/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY EDV + D+ +T P Y+YSK I R+ A+ +A ++ YA+KAN+N +L
Sbjct: 11 LYAEDVSLHDIAQT-HGTPCYVYSKATIERHWLAFDKAAGAHPHLVCYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L KLG G +VSG EL L+AG DPTK +F+G GK E++ L Q + NV+S +
Sbjct: 70 VLAKLGSGFDIVSGGELLRVLKAGGDPTKVVFSGVGKTPEEIALGLQHNIKCFNVESPAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + K + +R+NPDVD + HPY++TG K +KFGI E+ + P
Sbjct: 130 LERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYRHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T++ F DA ++ ID++ G + +L++GGGLG+ Y
Sbjct: 190 N-LEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVGGGLGVTY--KD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + R +L LI EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 ETPPHPDEYTQAIAQRMQGREDLQLIFEPGRAIMANAGVLLTKVEFLKQGAEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q I P D +++ +DVVGP+CE+ DF+GKEREL D
Sbjct: 307 AMNDLIRPALYSAWQSI-----IPLDTSLTRDSAVYDVVGPICETGDFIGKERELAI-DA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + + E V
Sbjct: 361 GDYLAVRSAGAYGFVMASNYNSRCKAAEIMV 391
>gi|146294666|ref|YP_001185090.1| diaminopimelate decarboxylase [Shewanella putrefaciens CN-32]
gi|386315277|ref|YP_006011442.1| diaminopimelate decarboxylase [Shewanella putrefaciens 200]
gi|145566356|gb|ABP77291.1| diaminopimelate decarboxylase [Shewanella putrefaciens CN-32]
gi|319427902|gb|ADV55976.1| diaminopimelate decarboxylase [Shewanella putrefaciens 200]
Length = 414
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 228/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E +V D+ +T P Y+YS+ + R+ A+ A+ +I YA+KAN N +L
Sbjct: 11 LHAEGCQVADLAKTY-GTPLYIYSRATLERHWHAFNNAVMDHPHLICYAVKANANLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG P K +F+G GK + ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVIEAGGSPAKVVFSGVGKTVAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LEQLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LKVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + +R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 DETPPHPDVYAAALLKRLGNRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I + AP+D+E +FD+VGPVCE+ DFLGKER+L L
Sbjct: 306 AMNDLIRPALYSAWQNI--IPVAPRDSEAYEFDIVGPVCETGDFLGKERKLALAAG-DLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|15677805|ref|NP_274969.1| diaminopimelate decarboxylase [Neisseria meningitidis MC58]
gi|385854020|ref|YP_005900534.1| diaminopimelate decarboxylase [Neisseria meningitidis H44/76]
gi|416198964|ref|ZP_11619274.1| diaminopimelate decarboxylase [Neisseria meningitidis CU385]
gi|427826637|ref|ZP_18993687.1| diaminopimelate decarboxylase [Neisseria meningitidis H44/76]
gi|433465951|ref|ZP_20423421.1| diaminopimelate decarboxylase [Neisseria meningitidis NM422]
gi|433489147|ref|ZP_20446295.1| diaminopimelate decarboxylase [Neisseria meningitidis M13255]
gi|433491325|ref|ZP_20448437.1| diaminopimelate decarboxylase [Neisseria meningitidis NM418]
gi|433505781|ref|ZP_20462711.1| diaminopimelate decarboxylase [Neisseria meningitidis 9506]
gi|433507961|ref|ZP_20464857.1| diaminopimelate decarboxylase [Neisseria meningitidis 9757]
gi|433510140|ref|ZP_20466995.1| diaminopimelate decarboxylase [Neisseria meningitidis 12888]
gi|433512346|ref|ZP_20469154.1| diaminopimelate decarboxylase [Neisseria meningitidis 4119]
gi|13124076|sp|Q9JXM2.1|DCDA_NEIMB RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|7227237|gb|AAF42304.1| diaminopimelate decarboxylase [Neisseria meningitidis MC58]
gi|316985611|gb|EFV64558.1| diaminopimelate decarboxylase [Neisseria meningitidis H44/76]
gi|325139296|gb|EGC61837.1| diaminopimelate decarboxylase [Neisseria meningitidis CU385]
gi|325201024|gb|ADY96479.1| diaminopimelate decarboxylase [Neisseria meningitidis H44/76]
gi|432200648|gb|ELK56738.1| diaminopimelate decarboxylase [Neisseria meningitidis NM422]
gi|432220606|gb|ELK76425.1| diaminopimelate decarboxylase [Neisseria meningitidis M13255]
gi|432225459|gb|ELK81202.1| diaminopimelate decarboxylase [Neisseria meningitidis NM418]
gi|432238916|gb|ELK94477.1| diaminopimelate decarboxylase [Neisseria meningitidis 9506]
gi|432239171|gb|ELK94730.1| diaminopimelate decarboxylase [Neisseria meningitidis 9757]
gi|432244598|gb|ELL00084.1| diaminopimelate decarboxylase [Neisseria meningitidis 12888]
gi|432244707|gb|ELL00192.1| diaminopimelate decarboxylase [Neisseria meningitidis 4119]
Length = 414
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 230/393 (58%), Gaps = 22/393 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LRINPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRINPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+G
Sbjct: 175 HYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC- 348
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 349 EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|218767449|ref|YP_002341961.1| diaminopimelate decarboxylase [Neisseria meningitidis Z2491]
gi|13124075|sp|Q9JWA6.1|DCDA_NEIMA RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|121051457|emb|CAM07750.1| diaminopimelate decarboxylase [Neisseria meningitidis Z2491]
Length = 406
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 232/391 (59%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|340363327|ref|ZP_08685667.1| diaminopimelate decarboxylase [Neisseria macacae ATCC 33926]
gi|339886191|gb|EGQ75862.1| diaminopimelate decarboxylase [Neisseria macacae ATCC 33926]
Length = 406
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/390 (39%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTEAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLVEACERILILVDRLADEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V +K KNF+++D
Sbjct: 240 --TVPDLSAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLARVEFIKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V P P A D+VGP+CE+ DFLGK+R L + G
Sbjct: 298 AMNDLMRPALYDAYHHIEAVDPKNIPPLSA-----DIVGPICETGDFLGKDRTLAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV+ AGAY SMAS YN + R E V
Sbjct: 352 DLLVIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|217975044|ref|YP_002359795.1| diaminopimelate decarboxylase [Shewanella baltica OS223]
gi|217500179|gb|ACK48372.1| diaminopimelate decarboxylase [Shewanella baltica OS223]
Length = 414
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 224/387 (57%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E +V D+ +T P Y+YS+ + R+ A+ A+ +I YA+KAN N +L
Sbjct: 11 LHAEGCQVADLAQTY-GTPLYIYSRATLERHWHAFNNAVADHPHLICYAVKANANLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DP K +F+G GK ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVMEAGGDPAKVVFSGVGKTAAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LEQLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 AETPPHPDVYAAAILARLGDRQLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I + P+D+E +FD+VGPVCE+ DFLGK R+L L
Sbjct: 306 AMNDLIRPALYSAWQNI--IPVVPRDSEAYEFDIVGPVCETGDFLGKNRQLALAAG-DLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|332286107|ref|YP_004418018.1| diaminopimelate decarboxylase [Pusillimonas sp. T7-7]
gi|330430060|gb|AEC21394.1| diaminopimelate decarboxylase [Pusillimonas sp. T7-7]
Length = 420
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 231/403 (57%), Gaps = 13/403 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ ED+ + + T P Y+YS+ + EAY+ A EG + ++ Y +KAN+N
Sbjct: 11 NGALHAEDISLAQ-LATTYGTPLYVYSRQALHDAWEAYRIASEGRDVLVCYGMKANSNLA 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L + LG G +VSG EL L G DP K +F+G GK + ++ A + GV NV+S
Sbjct: 70 VLNEFKNLGTGFDIVSGGELARVLAVGADPAKVVFSGVGKQVWEMQAALEAGVKCFNVES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + ++ GK V LR+NPDVD Q HPY++TG K +KFGI EK
Sbjct: 130 EAELTRLAQVAQDMGKVAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIEKAIEVYQRAA 189
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L +VG CH+GS IT+V + DA ++ I + + + +L++GGG+GI Y
Sbjct: 190 TLPS-LSIVGVDCHIGSQITEVSPYLDALDKLIVLIQTLASHNIHLKHLDLGGGIGIRY- 247
Query: 311 HTGAVLPKPRNLIDTVRELVLSR----NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
T P +L+D V + L R +L +++EPGRSL+ N L+ V +K + KN
Sbjct: 248 -TDEQPLTPSDLLDKVFQ-TLGRHQLDHLQIVLEPGRSLVGNAGVLLTQVEYLKHSEAKN 305
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L+RP+LYDA+ +E V P Q + +D+VGP+CES D+L ++R+L T
Sbjct: 306 FAIVDAAMNDLVRPTLYDAWHSVEAVKPRQQGDTL--YDIVGPICESGDWLARDRKL-TL 362
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+G L + AGAY +MAS YN + R E V + ++ P
Sbjct: 363 QQGDLLAIMSAGAYAFTMASQYNTRPRAAEVMVDGDTAHLVRP 405
>gi|440228092|ref|YP_007335183.1| diaminopimelate decarboxylase [Rhizobium tropici CIAT 899]
gi|440039603|gb|AGB72637.1| diaminopimelate decarboxylase [Rhizobium tropici CIAT 899]
Length = 423
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 226/391 (57%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ + V PFY+YS + R+ + +A +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVPEIAKAV-GTPFYVYSTATLERHYRVFVEAFGDVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG ++ +F+G GK +++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSVGELRRALAAGIPASRIMFSGVGKTAQEMDAALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V RINPDVD + H ++TG K +KFGI ++ + +
Sbjct: 127 EPELEVLNQRAVRAGKVAPVSFRINPDVDARTHAKISTGKKENKFGISWQRARAVYERAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P + G H+GS IT++ F DA L+ + ++ +R G ++ +++IGGGLGI Y
Sbjct: 187 SLPG-INATGIDMHIGSQITELQPFDDAFKLLRDLVETLRGDGHDIHHVDIGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V+ + N ++ EPGR ++ N LV V VK G K+F+++
Sbjct: 246 DDNNPPPLPDAYAEIVKNQLRGLNCRIVTEPGRLIVGNAGILVTEVIYVKDGGDKSFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+AY I V+ A K DVVGPVCE+ D+L +R++ P G
Sbjct: 306 DGAMNDLIRPTLYEAYHEIRPVAVGDASAPRIKADVVGPVCETGDYLALDRDMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY A TYN ++ PE V+
Sbjct: 366 LLAVGSAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|15606446|ref|NP_213826.1| diaminopimelate decarboxylase [Aquifex aeolicus VF5]
gi|6225241|sp|O67262.1|DCDA_AQUAE RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|146386677|pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
gi|146386678|pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
gi|2983642|gb|AAC07209.1| diaminopimelate decarboxylase [Aquifex aeolicus VF5]
Length = 420
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 237/391 (60%), Gaps = 8/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++++ +T P Y+YS I EAY++A +++I YA+KAN N
Sbjct: 15 DGELFIEGVSLKELAQTF-GTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPH 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-QEGVFVNVDS 190
+++ L +LG GA +VSG EL LA +AG P + ++ G GK ++L A E + NV+S
Sbjct: 72 LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK + +R+NPDVDP+ HPY+ATG + SKFG+ + Q +
Sbjct: 132 RQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS 191
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
N L++VG HCH+GS I + +R+A +V+ + + +GF++ YL+IGGGLGI Y
Sbjct: 192 KLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYK 250
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P++L D +++L+ + +I+EPGRS++ N L+ V +K G+K+FI++
Sbjct: 251 PEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIV 309
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRPS+Y+AY HI V + ++ D+VGP+CE+ DFL +RE+ RG
Sbjct: 310 DAGMNDLIRPSIYNAYHHIIPVETKERKKVVA--DIVGPICETGDFLALDREIEEVQRGE 367
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY +M+S YN++ R E V +
Sbjct: 368 YLAVLSAGAYGFAMSSHYNMRPRAAEVLVEN 398
>gi|397662446|ref|YP_006503146.1| diaminopimelate decarboxylase [Taylorella equigenitalis ATCC 35865]
gi|394350625|gb|AFN36539.1| diaminopimelate decarboxylase [Taylorella equigenitalis ATCC 35865]
Length = 430
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/403 (39%), Positives = 234/403 (58%), Gaps = 10/403 (2%)
Query: 62 PVEHCFSKKADGFLYCEDVRVQDVMETVE-KRPFYLYSKPQITRNVEAYKQALEGL-NSI 119
PV F + LY E + V+++ + + PF LYSK I + YK L NS+
Sbjct: 5 PVSSPFIAYKNDKLYIESLSVKEIQNRLSTESPFVLYSKKAIESAWDGYKNILGKYPNSL 64
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
I YA+KAN+N +L+ LG G +VSG EL+ L G D K IF+G GK ++ LA
Sbjct: 65 ICYAVKANSNLSLLKLFVSLGAGFDIVSGGELKRCLEVGADTNKIIFSGVGKQSWEIKLA 124
Query: 180 AQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ G+ NV+SEF+LENI +R G K + LR+NPD+D + HPY++TG K +KFGI
Sbjct: 125 LESGIKCFNVESEFELENIATIARELGLKARISLRVNPDIDARTHPYISTGLKENKFGID 184
Query: 239 -NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVD 297
+ L +L A A + L++VG CH+GS I +++ + DAA ++ I +IR+ G +
Sbjct: 185 FSRALDVYLYA--ASIDALEIVGIDCHIGSQILEIEPYLDAADRVIELIKQIRSHGIYLS 242
Query: 298 YLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
+L+IGGG+GI Y + + + R ID ++ +I+EPGRSL+ N+ LV V
Sbjct: 243 HLDIGGGVGIRYSNENPIDIVCLRASIDAKLRSAGLEHMLVIMEPGRSLVGNSAILVAQV 302
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
G+K KNF +I+ M +LIRPSLY+AY + V + E +K+D+VGP+CE+ D+
Sbjct: 303 LGIKKTDYKNFAIINAGMNDLIRPSLYEAYHGVLPVQ--IRKGEATKYDIVGPICETGDW 360
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L K+R+L G + + GAY SMAS YN + EY V
Sbjct: 361 LAKDRKL-VLQAGDLIAIESVGAYGTSMASNYNSRPFLAEYLV 402
>gi|336309761|ref|ZP_08564739.1| diaminopimelate decarboxylase [Shewanella sp. HN-41]
gi|335866800|gb|EGM71760.1| diaminopimelate decarboxylase [Shewanella sp. HN-41]
Length = 414
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 226/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E RV D+ +T P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LHAEGCRVNDLAQTY-GTPLYIYSRATLERHWHAFDNAVADHPHLICYAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG P K +F+G GK + ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVIEAGGSPDKVVFSGVGKTVAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + VA R+ GK V LR+NPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LELLNQVAGRL-GKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAETVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ L++ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 AETPPHPDVYAAALLERLGDRKLKLIFEPGRAIAANAGIFVTEVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I V+ P++ + FD+VGPVCE+ DFLGK+R+L G L
Sbjct: 306 AMNDLIRPALYSAWQNIIPVN--PRNEQTYAFDIVGPVCETGDFLGKDRQLAVA-AGDLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|407779526|ref|ZP_11126781.1| diaminopimelate decarboxylase [Nitratireductor pacificus pht-3B]
gi|407298657|gb|EKF17794.1| diaminopimelate decarboxylase [Nitratireductor pacificus pht-3B]
Length = 423
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 219/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV VQ + V PFY YS +TR+ + +A GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVSVQAIAAAV-GTPFYCYSTATLTRHYRIFSEAFSGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG + +F+G GK ++ A + G+ NV+S
Sbjct: 67 VLKTLARLGAGMDVVSEGELRRALAAGVPADRILFSGVGKTASEMDFALRAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +LE + + G NV LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 127 KPELELLSARATALGLTANVSLRINPDVDARTHRKISTGKAENKFGIAWKEARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P LK+ G H+GS IT++ F DA L+ + +RA G ++++++GGGLG+ Y
Sbjct: 187 ELPG-LKVSGIDMHIGSQITELQPFDDAFALLTELTETLRADGHAIEHVDLGGGLGVPYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
G P P VR+ V L +++EPGR + AN LV+ V K KNF+++
Sbjct: 246 EDGDQPPLPEAYAAVVRKHVTKLGLKVMLEPGRLIAANAGILVSEVLFRKDGEAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V A DA DVVGPVCE+ D+L +R LP G
Sbjct: 306 DAAMNDLIRPTLYEAFHTIRPVRQAAADAPRMTADVVGPVCETGDYLALDRTLPELRPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY ASTYN + PE V
Sbjct: 366 LIAIGTAGAYGAVQASTYNSRPLVPEVLV 394
>gi|416184982|ref|ZP_11613234.1| diaminopimelate decarboxylase [Neisseria meningitidis M13399]
gi|421538946|ref|ZP_15985118.1| diaminopimelate decarboxylase [Neisseria meningitidis 93003]
gi|421541227|ref|ZP_15987356.1| diaminopimelate decarboxylase [Neisseria meningitidis 93004]
gi|421543228|ref|ZP_15989325.1| diaminopimelate decarboxylase [Neisseria meningitidis NM255]
gi|325133435|gb|EGC56099.1| diaminopimelate decarboxylase [Neisseria meningitidis M13399]
gi|402315434|gb|EJU50998.1| diaminopimelate decarboxylase [Neisseria meningitidis NM255]
gi|402315653|gb|EJU51216.1| diaminopimelate decarboxylase [Neisseria meningitidis 93003]
gi|402315770|gb|EJU51327.1| diaminopimelate decarboxylase [Neisseria meningitidis 93004]
Length = 406
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 233/396 (58%), Gaps = 28/396 (7%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + DA+KA+
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALKAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+G
Sbjct: 175 RHVAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILVLVDQLADEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKEREL 423
F+++D +M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTI 346
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 347 AC-EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|304388543|ref|ZP_07370644.1| diaminopimelate decarboxylase [Neisseria meningitidis ATCC 13091]
gi|304337463|gb|EFM03631.1| diaminopimelate decarboxylase [Neisseria meningitidis ATCC 13091]
Length = 406
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 230/393 (58%), Gaps = 22/393 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LRINPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRINPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+G
Sbjct: 175 HYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC- 348
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 349 EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|170724853|ref|YP_001758879.1| diaminopimelate decarboxylase [Shewanella woodyi ATCC 51908]
gi|169810200|gb|ACA84784.1| diaminopimelate decarboxylase [Shewanella woodyi ATCC 51908]
Length = 414
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L ED +V ++ T P Y+YS+ + R+ A+ A+ +I YA+KAN+N
Sbjct: 8 NGELLAEDCQVAELARTY-GTPLYIYSRATLERHWHAFDSAVANHPHLICYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK +E++ +A G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELSRVIEAGGDPKKVVFSGVGKTVEEMEMALNLGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + GK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 127 AAELEQLNLVALKLGKIAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDDAEAIFARAH 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++ G CH+GS +T++ F DA ++ ID++ Q +++ ++GGGLG+ Y
Sbjct: 187 ALPG-LQVKGVDCHIGSQLTEIKPFLDAMDRILALIDRLAEQDIIIEHFDVGGGLGVTY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + E + R L LI EPGR++ AN V V +K N K+F ++
Sbjct: 245 -DDETPPQPDVYASALVERLGDRKLKLIFEPGRAIAANAGIFVTQVLYLKGNSDKHFALV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRPSLY A+Q I + P++ E +D+VGPVCE+ DFLGKEREL +
Sbjct: 304 DGAMNDLIRPSLYSAWQKI--IPVVPREGESRNYDIVGPVCETGDFLGKERELCLEPQDY 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +M+S YN + R E V
Sbjct: 362 -LAVRSSGAYGFTMSSNYNSRPRAAEVMV 389
>gi|110635369|ref|YP_675577.1| diaminopimelate decarboxylase [Chelativorans sp. BNC1]
gi|110286353|gb|ABG64412.1| diaminopimelate decarboxylase [Chelativorans sp. BNC1]
Length = 421
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 220/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + + V PFY YS + R+ + +AL GL++++ YA+KAN+N
Sbjct: 8 DGVLHAENVPIPRITAAV-GTPFYCYSTATLERHYRVFSEALSGLDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG GA +VS ELR AL AG K +F+G GK E++ A G+ NV+S
Sbjct: 67 VLKTLGNLGAGADVVSQGELRRALAAGIPANKILFSGVGKTGEEMDFALSAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + +R G K V LRINPDVD + H ++TG +KFGI + +
Sbjct: 127 LPELELLSARARAIGVKAPVSLRINPDVDAKTHKKISTGKSENKFGIPWKDARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L++ G H+GS IT++ F A L+ + +RA G + ++++GGGLG+ Y
Sbjct: 187 SLPG-LEVTGIDMHIGSQITELQPFDQAFALLTELTETLRADGHAIKHVDLGGGLGVPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + VR V L +I EPGR ++ N L++ V +K KNF++I
Sbjct: 246 EDNEPPPLPDAYAEVVRRHVTRLGLKVIFEPGRLIVGNAGVLISRVLYLKEGEGKNFLII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDAY I V+ DA K DVVGPVCE+ DFL +R+LP + G
Sbjct: 306 DAAMNDLIRPTLYDAYHTIRPVAEPAADAPHLKADVVGPVCETGDFLALDRDLPRMEPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY ++STYN ++ PE V
Sbjct: 366 LIAVGTAGAYGAVLSSTYNSRLLVPEVLV 394
>gi|312884202|ref|ZP_07743913.1| diaminopimelate decarboxylase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368130|gb|EFP95671.1| diaminopimelate decarboxylase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 417
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 232/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ++DG L+ EDV + + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQSDGQLWAEDVALTTLAEQY-GTPLYVYSRATLERHWNAFDSAVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVIAAGGDPKKVVFSGVGKTRAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNQVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFERASTV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
D ++ P+ L + G CH+GS +T+++ F DA ++ ID ++ QG + +L++GGGL
Sbjct: 183 YDFAQSLPH-LSIKGIDCHIGSQLTEIEPFIDATDRLLKLIDDLKTQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L + L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVY--RDELPPQPSDYAKALLARLDGHKELELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q E+V P+ E +D+VGP+CE+ DFLGK+REL
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQ--EIVPVVPRKGETQTYDLVGPICETGDFLGKDRELV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY MAS YN ++R E V
Sbjct: 358 LRE-GDLLAVRSSGAYGFVMASNYNTRVRSAEVMV 391
>gi|322421972|ref|YP_004201195.1| diaminopimelate decarboxylase [Geobacter sp. M18]
gi|320128359|gb|ADW15919.1| diaminopimelate decarboxylase [Geobacter sp. M18]
Length = 417
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 224/397 (56%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K D L+ E+V ++D++ P Y+YSK + R+ +A A G I Y++
Sbjct: 2 HHFQYKGDE-LFAEEVAIKDIVAKT-GSPVYIYSKATLERHFKAMDDAFAGAPHTICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ LG G +VSG EL AL AG DP K +++G GK +++ A + G+
Sbjct: 60 KANSNLAVLKTFINLGSGVDIVSGGELYRALAAGVDPKKVVYSGVGKRDDEIAYALETGI 119
Query: 185 FV-NVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ NV+SE +L+ I VA R+ KK + +R+NPDVDPQ HPY+ TG K +KFGI E+
Sbjct: 120 LLFNVESEQELDRINEVAGRL-NKKAGIAIRVNPDVDPQTHPYITTGLKKAKFGINIERA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
K N L+++G CH+GS +TKV F DA + + +R G EV YL++G
Sbjct: 179 LGQYQRAKELSN-LEILGIDCHIGSQLTKVSPFVDAIKKLKRLLKGVREMGIEVKYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P + ++ E L+L+ EPGR+L+ N LV K
Sbjct: 238 GGLGIQYNDEAP--PLPADYGSSILEETKDLGLHLLFEPGRNLVGNAGILVGTCLYTKKG 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF+++D M +L RP+LY ++ + V QD I D+VGP+CES DFL K+RE
Sbjct: 296 EEKNFVIVDAGMNDLARPALYGSFHGVRPVF-RNQDGVIEG-DIVGPICESGDFLVKDRE 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+P +G + AGAY +M+S YN + R E V
Sbjct: 354 IPNFQQGDQIAFMSAGAYGFTMSSNYNSRPRVAEVMV 390
>gi|85714907|ref|ZP_01045893.1| diaminopimelate decarboxylase [Nitrobacter sp. Nb-311A]
gi|85698393|gb|EAQ36264.1| diaminopimelate decarboxylase [Nitrobacter sp. Nb-311A]
Length = 421
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 221/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ E V + + E V PFY YS + R+ + +A G + ++ YA+
Sbjct: 2 HHFDYR-DGVLHAEGVDLSTLAEVVGT-PFYCYSTATLERHYRVFAEAFAGTDHLVCYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L + KLG GA +VSG EL+ AL A K +F+G GK +L A V
Sbjct: 60 KANSNQSVLRTMAKLGAGADVVSGGELKRALAAEIPANKILFSGVGKTEAELRAALAADV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +L+ + + G+ V +RINPDVD H ++TG +KFGI + +
Sbjct: 120 LCINVESEPELDLLSRLASETGRTARVSVRINPDVDSGAHAKISTGRLENKFGIPITQAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +K+ G H+GS IT + A L+ +++ +RA G V +++ GG
Sbjct: 180 AVYARAAKLPG-IKVTGVDMHIGSQITDLGPMETAFRLLADFVSTLRADGHVVSHVDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI YY + P+P D VR + + + L+ EPGR ++ N LV V VK
Sbjct: 239 GLGIPYYEDRSAPPEPLAYADMVRRVTRNLDCTLMFEPGRMIVGNAGILVTRVIYVKHGN 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF++ID +M +LIRP+LY+AY I V AP+DA + DVVGPVCE+ D+L ER L
Sbjct: 299 ARNFVIIDAAMNDLIRPTLYEAYHQIMPVRAAPKDAAVMVADVVGPVCETGDYLALERNL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P P G L + AGAY + TYN + PE V+ ++ P
Sbjct: 359 PEPQAGDLLAIMTAGAYGAVQSGTYNTRALIPEVLVKGDQYAVVRP 404
>gi|240013231|ref|ZP_04720144.1| hypothetical protein NgonD_01030 [Neisseria gonorrhoeae DGI18]
gi|240015677|ref|ZP_04722217.1| hypothetical protein NgonFA_00668 [Neisseria gonorrhoeae FA6140]
gi|240120302|ref|ZP_04733264.1| hypothetical protein NgonPI_00705 [Neisseria gonorrhoeae PID24-1]
Length = 406
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVAYPRLAEEF-GTPLYVYSQSALTGAFENYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I +A+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKIAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EG--VPDLGAYARAVQKLMGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V ++ E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKNIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|418940259|ref|ZP_13493631.1| diaminopimelate decarboxylase [Rhizobium sp. PDO1-076]
gi|375053048|gb|EHS49455.1| diaminopimelate decarboxylase [Rhizobium sp. PDO1-076]
Length = 422
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/391 (37%), Positives = 225/391 (57%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + ++ V PFY YS + R+ + + +A +G+++++ YA+KAN+N
Sbjct: 8 DGVLYAEDVAIPEIARAV-GTPFYCYSTATLERHYKVFSKAFDGVDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG ++ +F+G GK ++ L + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSEGELRRALAAGIPASRIMFSGVGKTPSEMDLGLEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK +V RINPDVD + H ++TG K +KFGI ++ +
Sbjct: 127 EPELEILNQRALKAGKKAHVSFRINPDVDAKTHAKISTGKKENKFGISYDRARAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+++ G H+GS IT++ F +A L+ ++ +R G +D++++GGGLGI Y
Sbjct: 187 TLEG-IQVSGIDMHIGSQITELQPFEEAFRLLRELVETLRTDGHAIDHVDVGGGLGIPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P V++ + S N ++ EPGR L+ N LV V VK G K F+++
Sbjct: 246 DDNNPPPEPDAYARIVKDQLASLNCKIVTEPGRLLVGNAGILVTEVIYVKDGGNKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V + A + DVVGPVCE+ D+L +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYEAYHEIRPVILSAASAPRIRADVVGPVCETGDYLALDREMSMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ V AGAY A TYN + PE V+
Sbjct: 366 LISVGSAGAYGAVQAGTYNTRRLIPEVLVKG 396
>gi|49088246|gb|AAT51548.1| PA5277, partial [synthetic construct]
Length = 416
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + D L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DAELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
+V+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFDVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAAPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|307546848|ref|YP_003899327.1| diaminopimelate decarboxylase [Halomonas elongata DSM 2581]
gi|307218872|emb|CBV44142.1| diaminopimelate decarboxylase [Halomonas elongata DSM 2581]
Length = 429
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 161/394 (40%), Positives = 229/394 (58%), Gaps = 13/394 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + V E P Y+YSK + R+ AY +AL G +I YA+KAN N
Sbjct: 8 DGVLHGEDVDLTSVAEAF-GTPCYVYSKATLARHFRAYTEALGGHPHLICYAVKANANLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L AG DP K +F+G K ++ A + G+ NV+S
Sbjct: 67 VLGLLARLGAGFDIVSVGELERVLVAGGDPAKVVFSGVAKQENEMARALEVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+LE + +R GK +V LR+NPDVD HPY++TG K++KFGI +E + + A
Sbjct: 127 RAELERLDAVARGLGKVASVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEAFEVYRQA- 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A + +++ G CH+GS +T++ F DA ++ ++++R G EV++L++GGGLG+ Y
Sbjct: 186 -AGMDNVRVAGLDCHIGSQLTELSPFLDALDRLLALLEQLRDAGIEVEHLDLGGGLGVPY 244
Query: 310 YHTGAVLPKP----RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
P+P +L++ + S L L+ EPGRS+ AN L+ V +K TK
Sbjct: 245 QDENP--PQPFDYATSLLERLSRWPGSERLTLLFEPGRSIAANAGVLLTRVEFLKPGETK 302
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +LIRP+LY A+Q I L Q E +DVVGPVCE+ DFLGK+R L
Sbjct: 303 NFAIVDAAMNDLIRPALYQAWQAI-LPVDTRQPRETDTYDVVGPVCETGDFLGKQRRLAI 361
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + RPPE V
Sbjct: 362 A-AGDLLAVRSAGAYGFVMASNYNSRPRPPEVMV 394
>gi|386817374|ref|ZP_10104592.1| diaminopimelate decarboxylase [Thiothrix nivea DSM 5205]
gi|386421950|gb|EIJ35785.1| diaminopimelate decarboxylase [Thiothrix nivea DSM 5205]
Length = 416
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/389 (40%), Positives = 221/389 (56%), Gaps = 6/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV V D+ P Y+YS+ + R+ A+ A ++ YA+KAN+N
Sbjct: 8 NGQLFAEDVAVADIAHA-HGTPCYIYSRATLERHWHAFNDAFGTQPHLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
IL +LG G +VSG EL LRAG DP K +F+G GK ++ A + G+ NV+S
Sbjct: 67 ILNLFARLGSGFDIVSGGELERVLRAGGDPDKVVFSGVGKKAVEIRHALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ I + GK V LR+NPDVD Q HPY++TG K +KFGI + +
Sbjct: 127 EAELDRINAVAGEMGKVAPVSLRVNPDVDAQTHPYISTGLKENKFGIEIGRAEAVYLKAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN LK+VG CH+GS + + F DA ++ +++ QG +V +L+IGGGLG+ Y
Sbjct: 187 AMPN-LKVVGIDCHIGSQLLTLTPFMDALQRVLALAERLAEQGVQVHHLDIGGGLGVRYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
H + P P + + + R + +EPGR++ AN LV V +K KNF V+
Sbjct: 246 HD-QLAPSPADYMANLFTDERLRQYEIFVEPGRAIAANAGILVTEVEFLKMAEYKNFAVV 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+Q I V P + + +DVVGPVCE+ DFLGKER+L G
Sbjct: 305 DAAMNDLIRPALYSAWQEIIPVVPR-SEGKTETYDVVGPVCETGDFLGKERDLNI-QPGD 362
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +MAS YN + R E V
Sbjct: 363 LLAVRSSGAYGFTMASNYNTRPRALEVMV 391
>gi|149376983|ref|ZP_01894737.1| diaminopimelate decarboxylase [Marinobacter algicola DG893]
gi|149358760|gb|EDM47230.1| diaminopimelate decarboxylase [Marinobacter algicola DG893]
Length = 416
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/388 (39%), Positives = 223/388 (57%), Gaps = 7/388 (1%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E+V V+D+ P Y+YS+ + R+ AY AL G ++ YA+KAN+N +
Sbjct: 9 GELFAENVAVEDIARRF-GTPAYVYSRATLERHYRAYDDALAGRPHLVCYAVKANSNIAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL +RAG DP K +F+G GK ++ A + GV NV+S+
Sbjct: 68 LNVLARLGAGFDIVSAGELERVIRAGGDPAKTVFSGVGKQRWEMRRALEAGVRCFNVESD 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ + + G + V LR+NPDVD HPY++TG K +KFGI + + A
Sbjct: 128 TELDRLNEVAGELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIAEAPAVYERAAA 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
N L + G CH+GS +T V F DA ++ ID + + + +L++GGGLG+ Y
Sbjct: 188 MAN-LDIQGVDCHIGSQLTSVSPFLDALDRVLELIDTLAKKNINIRHLDMGGGLGVTYDQ 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P+P + + + E + R+L LI+EPGRS+ AN L+ V +K +NF + D
Sbjct: 247 EQP--PQPSDYVTALAERLGDRSLELIMEPGRSIAANAGILLTRVEFLKCTEHRNFAITD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+Q I V+P D + +D+VGPVCE+ DFLGK+R+L G
Sbjct: 305 AAMNDLIRPALYSAWQSIIPVTPR-NDGDEKHWDLVGPVCETGDFLGKDRKLRL-QAGDL 362
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + RPPE V
Sbjct: 363 LAVRSAGAYGFVMSSNYNTRNRPPELMV 390
>gi|421863595|ref|ZP_16295290.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378898|emb|CBX22485.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 406
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 232/390 (59%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T+ E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSQSALTKAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ES--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKF--DVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V + IS ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAV----ETKNISPLTANIVGPICETGDFLGKDRTIAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 352 DLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|161869233|ref|YP_001598399.1| diaminopimelate decarboxylase [Neisseria meningitidis 053442]
gi|416165074|ref|ZP_11607327.1| diaminopimelate decarboxylase [Neisseria meningitidis N1568]
gi|416214804|ref|ZP_11623098.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240013]
gi|418291381|ref|ZP_12903397.1| diaminopimelate decarboxylase [Neisseria meningitidis NM220]
gi|421545296|ref|ZP_15991360.1| diaminopimelate decarboxylase [Neisseria meningitidis NM140]
gi|421547344|ref|ZP_15993382.1| diaminopimelate decarboxylase [Neisseria meningitidis NM183]
gi|421549381|ref|ZP_15995395.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2781]
gi|421553552|ref|ZP_15999512.1| diaminopimelate decarboxylase [Neisseria meningitidis NM576]
gi|433474300|ref|ZP_20431654.1| diaminopimelate decarboxylase [Neisseria meningitidis 97021]
gi|433482730|ref|ZP_20439982.1| diaminopimelate decarboxylase [Neisseria meningitidis 2006087]
gi|433484734|ref|ZP_20441951.1| diaminopimelate decarboxylase [Neisseria meningitidis 2002038]
gi|433486975|ref|ZP_20444164.1| diaminopimelate decarboxylase [Neisseria meningitidis 97014]
gi|161594786|gb|ABX72446.1| diaminopimelate decarboxylase [Neisseria meningitidis 053442]
gi|325127395|gb|EGC50328.1| diaminopimelate decarboxylase [Neisseria meningitidis N1568]
gi|325143686|gb|EGC66005.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240013]
gi|372199933|gb|EHP14088.1| diaminopimelate decarboxylase [Neisseria meningitidis NM220]
gi|402321373|gb|EJU56848.1| diaminopimelate decarboxylase [Neisseria meningitidis NM140]
gi|402321707|gb|EJU57180.1| diaminopimelate decarboxylase [Neisseria meningitidis NM183]
gi|402323371|gb|EJU58815.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2781]
gi|402327864|gb|EJU63249.1| diaminopimelate decarboxylase [Neisseria meningitidis NM576]
gi|432207618|gb|ELK63607.1| diaminopimelate decarboxylase [Neisseria meningitidis 97021]
gi|432214201|gb|ELK70106.1| diaminopimelate decarboxylase [Neisseria meningitidis 2006087]
gi|432219540|gb|ELK75381.1| diaminopimelate decarboxylase [Neisseria meningitidis 2002038]
gi|432220574|gb|ELK76394.1| diaminopimelate decarboxylase [Neisseria meningitidis 97014]
Length = 414
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 232/391 (59%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y +
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQN 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|212554785|gb|ACJ27239.1| Diaminopimelate decarboxylase [Shewanella piezotolerans WP3]
Length = 414
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 223/386 (57%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E +V ++ + P Y+YS+ + R+ A+ A+ +I YA+KAN+N +L
Sbjct: 11 LYAEQCQVAELAKQ-HGTPLYIYSRATLERHWYAFDNAVANHPHLICYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DP K +F+G GK + ++ LA + G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMELALEIGIYCFNVESAAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + V ++ K V LRINPDVD HPY++TG K +KFGI E+ + K P
Sbjct: 130 LEQLSVVAQRMNKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEAIFLRAKELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+++ G CH+GS +T++ F DA M+ ID++ G E+ + ++GGGLG+ Y
Sbjct: 190 C-IEIKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAELGIEIKHFDVGGGLGVTY--DD 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
+ P+P + E + R+L LI EPGR++ AN V V +K N K F ++DG+
Sbjct: 247 ELPPQPDVYAAALLERLGGRDLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFALVDGA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPSLY A+Q I + + E +DVVGPVCE+ DFLGK+R+L G L
Sbjct: 307 MNDLIRPSLYSAWQKI--IPAIDRGGETLNYDVVGPVCETGDFLGKDRQLNIA-AGDYLA 363
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
+ +GAY +MAS YN + R E V
Sbjct: 364 IRSSGAYGFTMASNYNSRPRAAELMV 389
>gi|410625929|ref|ZP_11336699.1| diaminopimelate decarboxylase [Glaciecola mesophila KMM 241]
gi|410154549|dbj|GAC23468.1| diaminopimelate decarboxylase [Glaciecola mesophila KMM 241]
Length = 415
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 224/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY EDV + D+ +T P Y+YSK I R+ A+ +A ++ YA+KAN+N +L
Sbjct: 11 LYAEDVSLHDIAQT-HGTPCYVYSKATIERHWLAFDKAAGAHPHLVCYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L KLG G +VSG EL L+AG DPTK +F+G GK +++ L Q + NV+S +
Sbjct: 70 VLAKLGSGFDIVSGGELLRVLKAGGDPTKVVFSGVGKTPQEIALGLQHNIKCFNVESPAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + K + +R+NPDVD + HPY++TG K +KFGI E+ + P
Sbjct: 130 LERISQVAVAENKVAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYRHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T++ F DA ++ ID++ G + +L++GGGLG+ Y
Sbjct: 190 N-LEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVGGGLGVTY--KD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + R +L LI EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 ETPPHPDEYTQAIAQRMQGREDLQLIFEPGRAIMANAGVLLTKVEFLKQGAEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q I P D +++ +DVVGP+CE+ DF+GKEREL D
Sbjct: 307 AMNDLIRPALYSAWQSI-----IPLDTSLTRDSAVYDVVGPICETGDFIGKERELAI-DA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + + E V
Sbjct: 361 GDYLAVRSAGAYGFVMASNYNSRCKAAEIMV 391
>gi|418055274|ref|ZP_12693329.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans 1NES1]
gi|353210856|gb|EHB76257.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans 1NES1]
Length = 436
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/406 (36%), Positives = 222/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV + + + V PFY YS + R+ + +A ++I +A+
Sbjct: 15 HHFHYR-DGILHAEDVSLARIADDV-GTPFYCYSTATLERHYDVLARAFRDQQALICFAV 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L + +LG G +VS ELR A AG +K IF G GK ++ A +EG+
Sbjct: 73 KANSNQAVLATMARLGAGMDVVSEGELRRARAAGVPASKIIFAGVGKTRGEMAYALEEGI 132
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + GK + +R+NPDVD + H ++TG +KFG+ E +
Sbjct: 133 LGFNVESEPELLALSEVATAIGKTAAIAIRVNPDVDAKTHAKISTGKAENKFGVPFEDAR 192
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +K+ G H H+GS IT + FRDA L+ + ++A G +++L+IGG
Sbjct: 193 ELYGRAAKLPG-IKIAGIHMHIGSQITDLAPFRDAFALLRDLARDLKADGIRLEHLDIGG 251
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y + V P P V+ + L +++EPGR ++ N LV VT VK
Sbjct: 252 GLGVPYRGSNDVPPTPDEYAAVVKSALGDLGLKIVLEPGRMIVGNAGVLVTRVTYVKEGE 311
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F ++D +M +LIRP+LY+A+ I V+ D + DVVGPVCE+ DFL ++R L
Sbjct: 312 DKTFTIVDAAMNDLIRPTLYEAHHDIWPVAEQRNDMAPVQQDVVGPVCETGDFLAEDRAL 371
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P P G L + AGAY M+STYN ++ PE V ++ P
Sbjct: 372 PPPQAGDLLAIMTAGAYGAVMSSTYNTRLLVPEVLVNGDRYAVVRP 417
>gi|116254060|ref|YP_769898.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. viciae
3841]
gi|115258708|emb|CAK09813.1| putative diaminopimelate decarboxylase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 422
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 226/394 (57%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADIPANRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLGI
Sbjct: 183 AHAARLPGIEVTGIDMHIGSQITELQPFDDAFKLLHDLVATLRADGHTIHHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + + +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLDCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G + V AGAY A TYN ++ PE VR
Sbjct: 363 PGDLMAVSTAGAYGAVQAGTYNSRLLVPEVLVRG 396
>gi|126176184|ref|YP_001052333.1| diaminopimelate decarboxylase [Shewanella baltica OS155]
gi|160877194|ref|YP_001556510.1| diaminopimelate decarboxylase [Shewanella baltica OS195]
gi|378710409|ref|YP_005275303.1| diaminopimelate decarboxylase [Shewanella baltica OS678]
gi|386342938|ref|YP_006039304.1| diaminopimelate decarboxylase [Shewanella baltica OS117]
gi|418022526|ref|ZP_12661513.1| diaminopimelate decarboxylase [Shewanella baltica OS625]
gi|125999389|gb|ABN63464.1| diaminopimelate decarboxylase [Shewanella baltica OS155]
gi|160862716|gb|ABX51250.1| diaminopimelate decarboxylase [Shewanella baltica OS195]
gi|315269398|gb|ADT96251.1| diaminopimelate decarboxylase [Shewanella baltica OS678]
gi|334865339|gb|AEH15810.1| diaminopimelate decarboxylase [Shewanella baltica OS117]
gi|353538751|gb|EHC08306.1| diaminopimelate decarboxylase [Shewanella baltica OS625]
Length = 414
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 224/387 (57%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E +V D+ +T P Y+YS+ + R+ A+ A+ +I YA+KAN N +L
Sbjct: 11 LHAEGCQVADLAQTY-GTPLYIYSRATLERHWHAFNNAVADHPHLICYAVKANANLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DP K +F+G GK ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVMEAGGDPAKVVFSGVGKTAAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LELLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 AETPPHPDVYAAAILARLGDRQLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I + P+D+E +FD+VGPVCE+ DFLGK R+L L
Sbjct: 306 AMNDLIRPALYSAWQNI--IPVVPRDSEAYEFDIVGPVCETGDFLGKNRQLALAAG-DLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|421555232|ref|ZP_16001167.1| diaminopimelate decarboxylase [Neisseria meningitidis 98008]
gi|402331014|gb|EJU66356.1| diaminopimelate decarboxylase [Neisseria meningitidis 98008]
Length = 414
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 225/391 (57%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK--A 251
+E I + GK V LR+NPDVD + HPY++TG K +KFGI LDA + A
Sbjct: 122 IERIQKVAERLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADA---LDAYRHAA 178
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
+ LK+VG CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 179 QQSNLKIVGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EN--VPDLGAYARAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|404379138|ref|ZP_10984206.1| diaminopimelate decarboxylase [Simonsiella muelleri ATCC 29453]
gi|294483484|gb|EFG31169.1| diaminopimelate decarboxylase [Simonsiella muelleri ATCC 29453]
Length = 406
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 223/385 (57%), Gaps = 8/385 (2%)
Query: 76 YCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEH 135
+CE++ + E P Y+YS+ +T AY+ A G +I YA+KAN+N I++H
Sbjct: 4 FCENIAYSYLAEHF-GTPLYVYSENALTNAFRAYEMAFSGSQPLICYAVKANSNLSIIKH 62
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
+LG G VSG E+ L AG K IF+G GK + ++ A G+ NV+S +L
Sbjct: 63 FSELGSGFDTVSGGEIARVLAAGGAAKKIIFSGVGKSVAEIAFALNAGIKCFNVESLPEL 122
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
+ I + GK + LRINPDVD + HPY++TG K +KFGI + + A+ +
Sbjct: 123 DRINQVAEQMGKIAPISLRINPDVDAKTHPYISTGLKANKFGIAMSQAEQAYQ-YAANQS 181
Query: 255 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314
LK++G CH+GS + + +A ++ +DK+ AQG E++++++GGG+GI Y++
Sbjct: 182 HLKIMGIDCHIGSQLIDLSPLVEACQRLLMLVDKLSAQGIELEHIDLGGGVGIVYHNE-- 239
Query: 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM 374
+P V+ L+ R L+L++EPGRSL+ N L+ V VK KNF+++D +M
Sbjct: 240 PIPNLNEYAQAVQNLLAGRKLDLVLEPGRSLVGNAGTLLTRVEFVKQGEEKNFVIVDAAM 299
Query: 375 AELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVV 434
+L+RP+LY AY HIE Q ++ D+VGP+CE+ DFL + R++ + G L+V
Sbjct: 300 NDLMRPALYQAYHHIENAEKNKQPEILA--DIVGPICETGDFLAQNRQI-AAEAGDLLLV 356
Query: 435 HDAGAYCMSMASTYNLKMRPPEYWV 459
H AGAY SMAS YN + R E V
Sbjct: 357 HSAGAYGASMASNYNTRCRAAEVLV 381
>gi|254501211|ref|ZP_05113362.1| diaminopimelate decarboxylase [Labrenzia alexandrii DFL-11]
gi|222437282|gb|EEE43961.1| diaminopimelate decarboxylase [Labrenzia alexandrii DFL-11]
Length = 424
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 222/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K G L+ EDV ++++ V PFY+YS +TR+ E + A + S++ YA+
Sbjct: 2 HHFDYKG-GALFAEDVAIEEIAREV-GTPFYVYSTATLTRHYEVFSSAFADIPSLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS ELR A AG K +F+G GK + A E +
Sbjct: 60 KANSNQAVLATLAQLGAGMDVVSEGELRRARAAGVPANKIVFSGVGKTETEQAYALTEDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + GK V +RINPDVD + H +ATG +KFGI ++ +
Sbjct: 120 LCFNVESEPELHQLSRVATKIGKTARVSMRINPDVDAKTHAKIATGKAENKFGIPWQRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ P LK+ G H+GS IT+++ F A + I +R QG +D++++GG
Sbjct: 180 EVYATAASLPG-LKVTGIDMHIGSQITELEPFDSAFARLGELITDLRGQGHAIDHVDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P + V++ V + ++ EPGR + N LV V VK
Sbjct: 239 GLGIPYVTDNDPPPHPDAYAEVVKKHVRELDCKVMFEPGRMIAGNAGILVTQVIYVKEGA 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF+++D M +LIRP+LY+AY + VS +A+ DVVGPVCE+ DFL + R++
Sbjct: 299 DKNFVIVDAGMNDLIRPTLYEAYHEVRPVSEPDVNADRFTADVVGPVCETGDFLAQNRDM 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P + G L V+ AGAY +STYN ++ PE V + +I P
Sbjct: 359 PKVNAGDMLAVYSAGAYGSVQSSTYNSRLLVPEVLVNADQFAVIRP 404
>gi|424872566|ref|ZP_18296228.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393168267|gb|EJC68314.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 422
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 227/393 (57%), Gaps = 9/393 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGVLHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR A+ A ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRAIAADIPASRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGKK V RINPDVD + H ++TG K +KFGI E+ + A+
Sbjct: 127 EPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERAR----AIY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L ++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLGI
Sbjct: 183 AHAARLPGIEVTGIDMHIGSQITELQPFDDAFKLLHDLVATLRADGHTIHHVDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P V+ + + +I EPGR ++ N LV V VK G K F
Sbjct: 243 PYKDDNNPPPLPDAYAAIVKNQLRGLDCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++DG+M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P
Sbjct: 303 VIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G + V AGAY A TYN ++ PE VR
Sbjct: 363 PGDLMAVSTAGAYGAVQAGTYNSRLLVPEVLVR 395
>gi|404316569|ref|ZP_10964502.1| diaminopimelate decarboxylase [Ochrobactrum anthropi CTS-325]
Length = 421
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 223/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + +A G+ +++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAQAV-GTPFYVYSRATIERHFRVFSEAFAGMETLVTYALKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG GA VS E+R AL AG K +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLAKLGAGADTVSEGEIRRALAAGIPANKIVFSGVGKTPHEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK +V LRINPDVD + H ++TG +KFGI K +
Sbjct: 127 EPELEILSARAAKAGKVASVSLRINPDVDAKTHAKISTGKSENKFGIPRVKAREAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LDVVGIDMHIGSQIIDLEPFDNAFALMAQLVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPLPVAYAEIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I+ V+ DA + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIKPVTLPKDDAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V GAY ++STYN ++ PE V
Sbjct: 366 LIAVCTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|348027769|ref|YP_004870455.1| diaminopimelate decarboxylase [Glaciecola nitratireducens FR1064]
gi|347945112|gb|AEP28462.1| putative diaminopimelate decarboxylase [Glaciecola nitratireducens
FR1064]
Length = 416
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 161/408 (39%), Positives = 237/408 (58%), Gaps = 18/408 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L+ EDV V D+ + P Y+YS+ I R+ A+ A+ + +I YA+KA
Sbjct: 3 FFTYKDAQLFAEDVAVADIAKA-HGTPVYIYSRATIERHWHAFNNAVAKHDHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L KLG G +VS EL + AG DPTK +F+G GK +++ A Q+ +
Sbjct: 62 NSNLGVLSVLAKLGSGFDIVSKGELCRVIEAGGDPTKVVFSGVGKTSDEIRFALQQNIMC 121
Query: 186 VNVDSEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEK 241
NV+S+ +L+ I +++AG+ K + +RINPDVD + HPY++TG K +KFGI R++
Sbjct: 122 FNVESDAELDRI---NKVAGEIDVKAPISIRINPDVDAKTHPYISTGLKANKFGIARDDA 178
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
L+ + A A P+ L + G CH+GS +T + F DA ++ ID++ + +L++
Sbjct: 179 LRVYKRAA-AMPH-LDVKGMDCHIGSQLTDITPFVDALERLLILIDELAEHDIHISHLDV 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVK 360
GGGLG+ Y P P + + R +L LI+EPGR++ AN LV V +K
Sbjct: 237 GGGLGVPY--NDETPPHPNEYAAAMAAKMHGREHLKLILEPGRAIAANAGILVTEVEFLK 294
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +LIRP+LY A+Q I V P D K+DVVGPVCE+ DFLGK+
Sbjct: 295 QGEEKNFAIVDAAMNDLIRPALYSAWQAIIPVQPR-LDIAAQKYDVVGPVCETGDFLGKD 353
Query: 421 RELP-TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
R+L P G L V AGAY MAS YN + RPPE + +I++
Sbjct: 354 RDLAIVP--GDYLAVRSAGAYGFVMASNYNSRCRPPEIMIDKTETIVV 399
>gi|195952897|ref|YP_002121187.1| diaminopimelate decarboxylase [Hydrogenobaculum sp. Y04AAS1]
gi|195932509|gb|ACG57209.1| diaminopimelate decarboxylase [Hydrogenobaculum sp. Y04AAS1]
Length = 420
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 228/388 (58%), Gaps = 7/388 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V ++++ + P Y+YS I +AYK+A + ++ YA+KAN N I++
Sbjct: 16 LFLENVDLEELAKEF-GTPLYVYSASYIKDKAKAYKEAFK--DTDFHYALKANGNLSIIK 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L+ G GA +VSG ELR A++AG + +K ++ G GK +E+L A + + NV+S +
Sbjct: 73 LLKDEGFGADIVSGGELRKAIKAGIEASKIVYAGVGKTMEELKAAVEAEIKMFNVESSIE 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + ++ GKK NV +R+NPDVDP+ HPY++TG K SKFG+ + K +
Sbjct: 133 LDILNDIAKNLGKKANVAIRVNPDVDPKTHPYISTGMKKSKFGV-DIKTAYKEYQYAKSL 191
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G HCH+GS + V + +A+ + DK+ GF++ Y+++GGGLGI Y
Sbjct: 192 KHLNVIGIHCHIGSQLLDVSPYIEASEKVRELYDKLVKDGFDIKYIDMGGGLGIK-YKPE 250
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P++L + + L +EPGRS++ N L+ V +K G K+F+++D
Sbjct: 251 EQEPHPKDLKEALYPAFKDIKARLCLEPGRSMVGNAGILITEVQFLKDKGHKHFVIVDAG 310
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPS+Y AY HI + + + K D+VGP+CE+ DFL ++RE+ DRG L
Sbjct: 311 MNDLIRPSIYGAYHHI-VPTHNKYKEDFIKTDIVGPICETGDFLAQDREIHKVDRGDYLA 369
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRS 461
V AGAY SM+S YN++ R E + +
Sbjct: 370 VLSAGAYGFSMSSHYNIRPRAAEVLIEN 397
>gi|419797737|ref|ZP_14323197.1| diaminopimelate decarboxylase [Neisseria sicca VK64]
gi|385697236|gb|EIG27674.1| diaminopimelate decarboxylase [Neisseria sicca VK64]
Length = 406
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 153/390 (39%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTDAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLVEACERILILVDRLADEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V +K KNF+++D
Sbjct: 240 --TVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLARVEFIKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V P P A D+VGP+CE+ DFLGK+R L + G
Sbjct: 298 AMNDLMRPALYDAYHHIEAVEPKNIPPLTA-----DIVGPICETGDFLGKDRTLAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV+ AGAY SMAS YN + R E V
Sbjct: 352 DLLVIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|261379373|ref|ZP_05983946.1| diaminopimelate decarboxylase [Neisseria subflava NJ9703]
gi|284797820|gb|EFC53167.1| diaminopimelate decarboxylase [Neisseria subflava NJ9703]
Length = 406
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 230/392 (58%), Gaps = 20/392 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE + + E P Y+YSK +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQLPYTHLAEEF-GTPLYVYSKSALTEAFENYQTAFSALNPLVCYAVKANGNLNIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKVAPVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 -----PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ LK+VG CH+GS +T + +A ++ +D++ +G +++L++GGG+GI
Sbjct: 175 RHVSLQSHLKIVGIDCHIGSQLTDLSPLIEACERILALVDQLADEGIVLEHLDLGGGVGI 234
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y +P V++L+ +R L L++EPGRSL+ N L+ V VK KNF
Sbjct: 235 VYQDEN--VPDLGAYAQAVQKLIGTRRLKLVLEPGRSLVGNAGALLTRVEFVKHGEEKNF 292
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + +
Sbjct: 293 VMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-E 349
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 350 EGDLLLIRSAGAYGSSMASNYNTRNRAAEVLV 381
>gi|421551492|ref|ZP_15997482.1| diaminopimelate decarboxylase [Neisseria meningitidis 69166]
gi|421559966|ref|ZP_16005832.1| diaminopimelate decarboxylase [Neisseria meningitidis 92045]
gi|433472139|ref|ZP_20429517.1| diaminopimelate decarboxylase [Neisseria meningitidis 68094]
gi|433478530|ref|ZP_20435837.1| diaminopimelate decarboxylase [Neisseria meningitidis 70012]
gi|433522666|ref|ZP_20479348.1| diaminopimelate decarboxylase [Neisseria meningitidis 61103]
gi|433526992|ref|ZP_20483612.1| diaminopimelate decarboxylase [Neisseria meningitidis 69096]
gi|433539738|ref|ZP_20496203.1| diaminopimelate decarboxylase [Neisseria meningitidis 70030]
gi|402327156|gb|EJU62548.1| diaminopimelate decarboxylase [Neisseria meningitidis 69166]
gi|402334289|gb|EJU69580.1| diaminopimelate decarboxylase [Neisseria meningitidis 92045]
gi|432206765|gb|ELK62766.1| diaminopimelate decarboxylase [Neisseria meningitidis 68094]
gi|432213056|gb|ELK68984.1| diaminopimelate decarboxylase [Neisseria meningitidis 70012]
gi|432257630|gb|ELL12927.1| diaminopimelate decarboxylase [Neisseria meningitidis 61103]
gi|432258415|gb|ELL13700.1| diaminopimelate decarboxylase [Neisseria meningitidis 69096]
gi|432271071|gb|ELL26200.1| diaminopimelate decarboxylase [Neisseria meningitidis 70030]
Length = 414
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y +
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQN 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EK--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|261365975|ref|ZP_05978858.1| diaminopimelate decarboxylase [Neisseria mucosa ATCC 25996]
gi|288565436|gb|EFC86996.1| diaminopimelate decarboxylase [Neisseria mucosa ATCC 25996]
Length = 406
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 226/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTEAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLIEACERILILVDQLADEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 --TVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V P P A ++VGP+CE+ DFLGK+R + + G
Sbjct: 298 AMNDLMRPALYDAYHHIEAVEPKNIPPLTA-----NIVGPICETGDFLGKDRTIAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV+ AGAY SMAS YN + R E V
Sbjct: 352 DLLVIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|59802399|ref|YP_209111.1| hypothetical protein NGO2098 [Neisseria gonorrhoeae FA 1090]
gi|268593898|ref|ZP_06128065.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 35/02]
gi|268595955|ref|ZP_06130122.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae FA19]
gi|268600416|ref|ZP_06134583.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID18]
gi|268602648|ref|ZP_06136815.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID1]
gi|268681197|ref|ZP_06148059.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID332]
gi|268683367|ref|ZP_06150229.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-92-679]
gi|268685676|ref|ZP_06152538.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-93-1035]
gi|291044781|ref|ZP_06570490.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae DGI2]
gi|293397871|ref|ZP_06642077.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae F62]
gi|385336949|ref|YP_005890896.1| hypothetical protein NGTW08_2082 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|59719294|gb|AAW90699.1| putative diaminopimelate decarboxylase [Neisseria gonorrhoeae FA
1090]
gi|268547287|gb|EEZ42705.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 35/02]
gi|268549743|gb|EEZ44762.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae FA19]
gi|268584547|gb|EEZ49223.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID18]
gi|268586779|gb|EEZ51455.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID1]
gi|268621481|gb|EEZ53881.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID332]
gi|268623651|gb|EEZ56051.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-92-679]
gi|268625960|gb|EEZ58360.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-93-1035]
gi|291011675|gb|EFE03671.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae DGI2]
gi|291611817|gb|EFF40886.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae F62]
gi|317165492|gb|ADV09033.1| hypothetical protein NGTW08_2082 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 406
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 231/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSQSALTGAFENYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I +A+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKIAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EG--VPDLGAYARAVQKLMGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V ++ E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKNIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|328541749|ref|YP_004301858.1| diaminopimelate decarboxylase [Polymorphum gilvum SL003B-26A1]
gi|326411501|gb|ADZ68564.1| Diaminopimelate decarboxylase [Polymorphum gilvum SL003B-26A1]
Length = 424
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 217/396 (54%), Gaps = 4/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV V + E V PFY YS +TR+ E + A EG+ S++ YA+
Sbjct: 2 HHFDYR-DGALFAEDVPVAAIAEAV-GTPFYCYSTATLTRHYEVFSSAFEGIPSLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS ELR A AG + +F+G GK + LA E +
Sbjct: 60 KANSNQAVLATLARLGAGMDVVSEGELRRARAAGVPADRIMFSGVGKTEAEQALAIDEDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + G+ V LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 120 LCFNVESEPELVQLSRVATEKGRTARVSLRINPDVDARTHKKISTGKAENKFGIPWQRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +++ G H+GS IT+++ F A + + + +R G ++++++GG
Sbjct: 180 ALYAEAGELPG-IEVTGLDMHIGSQITELEPFDAAFARLGDLVRDLRGDGHHIEHIDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y A P P V++ V +I EPGR + N LV V VK
Sbjct: 239 GLGIPYVTDNAPPPHPVEYAAVVKKHVDKLGCRIIFEPGRLIAGNAGILVTRVIYVKEGH 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D +M +LIRP+LYDAY + V AP DA + DVVGPVCE+ DFL +R++
Sbjct: 299 DKTFVIVDAAMNDLIRPTLYDAYHEVRPVRAAPADARRIRADVVGPVCETGDFLAHDRDI 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P +G L V AGAY A TYN ++ PE V
Sbjct: 359 PEVGQGDMLAVFSAGAYGAVQAGTYNSRLLIPEVLV 394
>gi|399907892|ref|ZP_10776444.1| diaminopimelate decarboxylase [Halomonas sp. KM-1]
Length = 430
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 161/398 (40%), Positives = 231/398 (58%), Gaps = 21/398 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E+V + V + + P Y+YS+ +TR+ AY +AL +I YA+KAN+N
Sbjct: 8 DGVLYGEEVPLTQVADEI-GTPCYVYSRATLTRHYRAYTEALGSHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L AG DP K +F+G K ++ A + G+ NV+S
Sbjct: 67 VLNLLARLGAGFDIVSLGELERVLAAGGDPAKVVFSGVAKQEHEMARALEVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+LE + + GK V LR+NPDVD HPY++TG K++KFGI +E L+ + +
Sbjct: 127 RAELERLSAVAERLGKVAPVSLRVNPDVDAGTHPYISTGLKDNKFGIAVDEALEVY--EL 184
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A L +VG CH+GS +T++ F DA ++ ++++ +G +V++L++GGGLG+ Y
Sbjct: 185 AARLPGLNVVGIDCHIGSQLTELAPFLDALDRLLVLLERLHERGIKVEHLDLGGGLGVPY 244
Query: 310 YHTGAVLPKP----RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G P+P +L++ + + NL L+ EPGRS+ AN L+ V +K TK
Sbjct: 245 --RGERPPQPFDYAASLLERLAQWKHGENLTLLFEPGRSIAANAGVLLTRVEFLKPGETK 302
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDA----EISKFDVVGPVCESADFLGKER 421
NF ++D M +LIRPSLY A+Q I P D E + +DVVGPVCE+ DFLGKER
Sbjct: 303 NFAIVDAGMNDLIRPSLYQAWQAI-----IPVDTRHVRESAVYDVVGPVCETGDFLGKER 357
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
EL G L V AGAY MAS YN + RP E V
Sbjct: 358 ELAI-GPGDLLAVRSAGAYGFVMASNYNSRPRPAEVMV 394
>gi|376295259|ref|YP_005166489.1| diaminopimelate decarboxylase [Desulfovibrio desulfuricans ND132]
gi|323457820|gb|EGB13685.1| diaminopimelate decarboxylase [Desulfovibrio desulfuricans ND132]
Length = 412
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 149/397 (37%), Positives = 229/397 (57%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F ++ DG L+ E+V V + + P Y+YS R+ A+ A + L+ + +++
Sbjct: 2 HHFQQR-DGVLFAEEVSVTALAKQY-CTPLYIYSAATFRRHFHAFDSAFDALDHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L G G +VSG EL AL+AG DP++ +++G GK ++ A + +
Sbjct: 60 KANSNLAVLKMLAAEGAGMDIVSGGELYRALQAGVDPSRIVYSGVGKRDSEIREALEARI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
+ NV+S +LE I + G V RINPDVDPQ HPY++TG + +KFG+ + +
Sbjct: 120 LMFNVESLAELERIDQVAGEMGTTARVSFRINPDVDPQTHPYISTGMQKNKFGLDIDMSM 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
Q + A A ++ VG CH+GS +T +D F +A ++ + +++ G E+ YL++G
Sbjct: 180 QAYKRA--AELKHVEPVGMDCHIGSQLTSLDPFLEALDKLLAFNARLKDLGIEIKYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P P + + + L +I+EPGR + N LV V K+N
Sbjct: 238 GGLGIPYNEEEP--PHPAEFGKALSDKLKGLPLKVILEPGRVIAGNAGILVTEVVYTKSN 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF+++D +M +L+RPSLY +Y I V P + ++ FDVVGP+CES DFL ++RE
Sbjct: 296 PAKNFLIVDAAMNDLVRPSLYGSYHRIAEVEPKGRAPKV--FDVVGPICESGDFLARDRE 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +G LVV+ AGAY SM+S YN + R E V
Sbjct: 354 LPEVMQGELLVVYSAGAYGFSMSSNYNSRPRACELLV 390
>gi|225076892|ref|ZP_03720091.1| hypothetical protein NEIFLAOT_01943 [Neisseria flavescens
NRL30031/H210]
gi|224951778|gb|EEG32987.1| hypothetical protein NEIFLAOT_01943 [Neisseria flavescens
NRL30031/H210]
Length = 406
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 227/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSQSALTEAFEHYQTAFATLNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 YFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAERLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ-Q 180
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN LK+VG CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 181 PN-LKIVGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 N--VPDLGAYARAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G L
Sbjct: 298 AMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDLL 354
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
++ AGAY SMAS YN + R E V
Sbjct: 355 LIRSAGAYGSSMASNYNTRNRAAEVLV 381
>gi|120600508|ref|YP_965082.1| diaminopimelate decarboxylase [Shewanella sp. W3-18-1]
gi|120560601|gb|ABM26528.1| diaminopimelate decarboxylase [Shewanella sp. W3-18-1]
Length = 414
Score = 261 bits (666), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 154/387 (39%), Positives = 227/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E +V D+ +T P Y+YS+ + R+ A+ A+ +I YA+KAN N +L
Sbjct: 11 LHAEGCQVADLAKTY-GTPLYIYSRATLERHWHAFNNAVMDHPHLICYAVKANANLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG P K +F+G GK + ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVIEAGGSPAKVVFSGVGKTVAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LEQLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LKVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + +R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 DETPPHPDVYAAALLKRLGNRKLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I + P+D+E +FD+VGPVCE+ DFLGKER+L L
Sbjct: 306 AMNDLIRPALYSAWQNI--IPVVPRDSEAYEFDIVGPVCETGDFLGKERKLALAAG-DLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|114706749|ref|ZP_01439649.1| diaminopimelate decarboxylase protein [Fulvimarina pelagi HTCC2506]
gi|114537697|gb|EAU40821.1| diaminopimelate decarboxylase protein [Fulvimarina pelagi HTCC2506]
Length = 422
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 221/381 (58%), Gaps = 4/381 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V + + + PFY YS + R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGLLHAEDVPVTTIAKDI-GTPFYCYSTATLLRHYDVFSSAFADIDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L G GA +VSG EL ALR G DP K +F+G GK + ++ +A G+F N++S
Sbjct: 67 VLKTLADRGAGADVVSGGELLRALRVGIDPKKIMFSGVGKTIAEIDMAIASGIFCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE I + AG +V RINPDVD + H ++TG K+ KFGI ++ + +
Sbjct: 127 ENELELISARAVDAGLTAHVSFRINPDVDAKTHAKISTGRKSDKFGIAYDRAESIYARAR 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS I + F +A + + ++RA G E+ ++++GGGLG+ Y
Sbjct: 187 ELPG-VEVTGIDMHIGSQIIDLKPFDEAFDRLATLVHRLRAAGHEISHIDLGGGLGVPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ A P+P + V+ V ++ EPGR ++AN LV V VK + K F+++
Sbjct: 246 NADATPPEPHAYAEIVKRHVRDLGAKIVFEPGRMIVANAGILVARVLYVKKDEGKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I+ V A I+ D+VGP+CES DFLGK+RE+ G
Sbjct: 306 DAAMNDLIRPTLYEAWHEIQPVERAANRKTITA-DIVGPICESGDFLGKDREIVEVAEGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLK 451
+ + AGAY +STYN +
Sbjct: 365 LVFLSSAGAYGAVQSSTYNSR 385
>gi|49476269|ref|YP_034310.1| diaminopimelate decarboxylase [Bartonella henselae str. Houston-1]
gi|49239077|emb|CAF28380.1| Diaminopimelate decarboxylase [Bartonella henselae str. Houston-1]
Length = 421
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 232/404 (57%), Gaps = 3/404 (0%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + + V PFY YS + N + Y+ A + S+I YA+KA
Sbjct: 3 FFSYNQGVLHAEGLSLSALAQDV-GTPFYCYSASAVVTNFKDYQNAFLDMPSLIAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L G GA +VS ELR AL AG + +++G GK ++++ A ++
Sbjct: 62 NSNQAVLRLLAANGAGADVVSEGELRRALAAGIPAHRIVYSGVGKTVKEIDFALAHDIYC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + V + K V LRINPDVD + H + TG +KFGI L W
Sbjct: 122 FNVESEPELEQLSVCAVALSKTARVSLRINPDVDARTHRKITTGKSENKFGI-PLSLAWD 180
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ A +++ G H+GS I + F DA +++ +++ ++R+ G+ + +++IGGGL
Sbjct: 181 VYKKAAQLPGIQVCGVDMHIGSQICDLKPFEDAFLIVADFVRQLRSHGYALTHIDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GIDY + +P + VR+ + +++I+EPGRS++ + LV V +K +
Sbjct: 241 GIDYGNEHHSVPSLSDYAALVRKHIAPLGIHIILEPGRSIVGDAGVLVTSVLYLKRGNGR 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF+++D +M +L+RP+LYDA+Q++ LV A +DA + K D+VG VCE+ D+L +R +PT
Sbjct: 301 NFVIVDAAMNDLMRPTLYDAWQNVLLVEQASKDALLMKADIVGAVCETGDYLALDRRVPT 360
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + +AGAY MASTYN ++ PE V+ +I P
Sbjct: 361 LATGDLLAIMEAGAYGAVMASTYNSRLLVPEVLVQDTRYAVIRP 404
>gi|192360548|ref|YP_001983745.1| diaminopimelate decarboxylase [Cellvibrio japonicus Ueda107]
gi|190686713|gb|ACE84391.1| diaminopimelate decarboxylase [Cellvibrio japonicus Ueda107]
Length = 415
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 225/390 (57%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY ED+ ++DV E P Y+YS+ T+ +Y QAL +I YAIKAN+N
Sbjct: 8 NGELYAEDLPLRDVAERF-GTPCYVYSRAAFTQQYLSYAQALGSHPGMICYAIKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL L KLG G +VSG EL L AG +P++ +F+G GK ++++ A G+F NV+S
Sbjct: 67 ILNMLAKLGAGFDIVSGGELERVLYAGGNPSRIVFSGVGKSVQEMARALDVGIFCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK NV LR+NPDVD HPY++TG K +KFGI E+
Sbjct: 127 EAELELLAQVAADKGKVANVSLRVNPDVDANTHPYISTGLKENKFGIAIERAPAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L + G CH+GS +T++ F DA ++ ID++ A+G + +L++GGGLG+ Y
Sbjct: 187 QLPS-LAIKGLDCHIGSQLTQLTPFLDALERLLLLIDELAAKGIHISHLDLGGGLGVTYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + ++ + R L L+ EPGRS+ AN L+ V +K KNF VI
Sbjct: 246 DE--TPPPVAEYMAAIKAKLGDRPLALMFEPGRSISANAGVLLTQVMFLKPTEHKNFAVI 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKERELPTPDRG 429
D +M + IRPSLY A+Q I P Q + K +D+VGP+CE+ DFLGK REL + G
Sbjct: 304 DAAMNDNIRPSLYQAWQDIR---PLQQRGQAPKTWDLVGPICETGDFLGKGRELAI-EPG 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY SM+S YN + R E V
Sbjct: 360 DLLAVMSAGAYGFSMSSNYNTRGRAAEVVV 389
>gi|119776382|ref|YP_929122.1| diaminopimelate decarboxylase [Shewanella amazonensis SB2B]
gi|119768882|gb|ABM01453.1| diaminopimelate decarboxylase [Shewanella amazonensis SB2B]
Length = 414
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 227/397 (57%), Gaps = 18/397 (4%)
Query: 72 DGFLYCEDVRVQDVMETV-----EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
D FLY E+ + + P Y+YS+ + R+ A+ A+ +I YA+KA
Sbjct: 2 DHFLYREERLFAEECDVAGLAAEHGTPLYVYSRATLERHWHAFDGAVASHPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G GK + ++ LA G+
Sbjct: 62 NSNLAVLNVLARLGSGFDIVSGGELSRVLEAGGDPAKVVFSGVGKTVAEMELALNTGIMC 121
Query: 186 VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
N++S +LE + VA R+ GK V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 122 FNLESGAELELLNEVAGRL-GKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIPMEEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A PN L + G CH+GS +T++ F DA M+ ID++ QG +++ ++GGG
Sbjct: 181 LFARAAALPN-LAVKGVDCHIGSQLTELKPFLDAMDRMLALIDRLAEQGIVIEHFDVGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y G P P + E + R L LI EPGR++ AN V V K NG
Sbjct: 240 LGVTY--NGETPPHPDVYAAAILEKLNGRPLKLIFEPGRAIAANAGIFVTQVLYTKDNGD 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K F+++DG+M +LIRPSLY A+Q+I + + ++ DVVGPVCE+ DFLGK+REL
Sbjct: 298 KRFVIVDGAMNDLIRPSLYGAWQNI--IPAVKTNEPTTRCDVVGPVCETGDFLGKDRELA 355
Query: 425 TPDRGAG--LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G+G LVV AGAY +MAS YN + R E V
Sbjct: 356 A---GSGDLLVVRSAGAYGFTMASNYNTRPRAAELMV 389
>gi|335042135|ref|ZP_08535162.1| diaminopimelate decarboxylase [Methylophaga aminisulfidivorans MP]
gi|333788749|gb|EGL54631.1| diaminopimelate decarboxylase [Methylophaga aminisulfidivorans MP]
Length = 416
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 226/390 (57%), Gaps = 9/390 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E+V V + E P Y+YS+ + + +A+ +A ++ YA+KAN+N +
Sbjct: 9 GTLHAENVPVDKIAEQY-GTPVYIYSRTAVENHWKAFDEAFSAYPHLVCYAVKANSNLAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSE 191
L L K G G +VS EL L AG DP K +F+G GK +++ A Q G+ NV+S
Sbjct: 68 LNVLAKQGSGFDIVSMGELARVLAAGGDPAKTVFSGVGKTEQEIEYALQHGIRCFNVESI 127
Query: 192 FDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ I VA R+ GKK V +R+NPDVD Q HPY++TG K +KFGI E + + +
Sbjct: 128 PELDRINAVAGRL-GKKAPVSIRVNPDVDAQTHPYISTGLKENKFGIAIEDAREVYRSTQ 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P+ L +V CH+GS +T V F DA +++ ID++ G E+ +L+IGGGLGI Y
Sbjct: 187 AMPH-LNVVAVDCHIGSQLTSVSPFVDALERVLSLIDELAEDGIEIKHLDIGGGLGIHY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + L+ R L +++EPGR++ N L+ V +K K F ++
Sbjct: 245 -RDETPPTPAEYAQALAPLLKDRELEILLEPGRAIAGNAGILLTKVEFIKPTEAKCFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY ++Q+I+ V E+ +D+VGP+CE+ DFLGK+REL D+G
Sbjct: 304 DAAMNDLLRPALYQSWQNIQTVKQHSH-TEVVSYDIVGPICETGDFLGKDRELAI-DQGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L + AGAY +M+S YN + R E V
Sbjct: 362 LLAIRSAGAYGFAMSSNYNSRPRAAEVMVE 391
>gi|352100627|ref|ZP_08958214.1| diaminopimelate decarboxylase [Halomonas sp. HAL1]
gi|350601047|gb|EHA17102.1| diaminopimelate decarboxylase [Halomonas sp. HAL1]
Length = 423
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 227/396 (57%), Gaps = 17/396 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + + + P Y+YSK R+ AY +AL G +I YA+KAN+N
Sbjct: 8 DGVLYAEDVPLSRIADE-HGTPCYVYSKATFERHFRAYTEALGGHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L KLG G +VS EL L+AG DP +F+G K ++ A + G+ NV+S
Sbjct: 67 VLGLLAKLGAGFDIVSIGELERVLKAGGDPANVVFSGVAKQAHEMARALEVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + GK V LR+NPDVD HPY++TG K++KFGI ++ +
Sbjct: 127 RPELERLNRVAGELGKTAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEALDVYELAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN LK+ G CH+GS +T+ F DA ++ ++++R +G E+++L++GGGLG+ Y
Sbjct: 187 SLPN-LKVKGLDCHIGSQLTETAPFLDALDRLLMLMERLRERGIEIEHLDLGGGLGVPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELV--LSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
KP D +L+ LSR L L+ EPGRS+ AN ++ V +K
Sbjct: 246 DE-----KPPQPFDYASQLLARLSRWEGGEALTLLFEPGRSIAANAGVMLTRVEFLKPGE 300
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNF ++D +M +LIRP+LY A+Q I V Q E + +DVVGPVCE+ DFLGKEREL
Sbjct: 301 TKNFAIVDAAMNDLIRPALYQAWQAIVPVD-TRQTRESALYDVVGPVCETGDFLGKEREL 359
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY MAS YN + R E V
Sbjct: 360 AIAE-GDLLAVRSAGAYGFVMASNYNSRPRAAELMV 394
>gi|153008332|ref|YP_001369547.1| diaminopimelate decarboxylase [Ochrobactrum anthropi ATCC 49188]
gi|151560220|gb|ABS13718.1| diaminopimelate decarboxylase [Ochrobactrum anthropi ATCC 49188]
Length = 421
Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 223/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + +A G+ +++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAQAV-GTPFYVYSRATIERHFRVFSEAFAGMETLVTYALKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG GA VS E+R AL AG K +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLAKLGAGADTVSEGEIRRALAAGIPANKIVFSGVGKTPHEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK +V LRINPDVD + H ++TG +KFGI K +
Sbjct: 127 EPELEILSARAVKAGKVASVSLRINPDVDAKTHAKISTGKSENKFGIPRVKAREAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LDVVGIDMHIGSQIIDLEPFDNAFALMAQLVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPLPVAYAEIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I+ V+ DA + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIKPVTLPKDDAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V GAY ++STYN ++ PE V
Sbjct: 366 LIAVCTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|373951283|ref|ZP_09611244.1| diaminopimelate decarboxylase [Shewanella baltica OS183]
gi|386322898|ref|YP_006019015.1| diaminopimelate decarboxylase [Shewanella baltica BA175]
gi|333817043|gb|AEG09709.1| diaminopimelate decarboxylase [Shewanella baltica BA175]
gi|373887883|gb|EHQ16775.1| diaminopimelate decarboxylase [Shewanella baltica OS183]
Length = 414
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 225/396 (56%), Gaps = 16/396 (4%)
Query: 72 DGFLY------CEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
D FLY E +V D+ +T P Y+YS+ + R+ A+ A+ +I YA+K
Sbjct: 2 DHFLYQQNALQAEGCQVADLAQTY-GTPLYIYSRATLERHWHAFNNAVADHPHLICYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A G++
Sbjct: 61 ANANLAVLNVLARLGSGFDIVSGGELARVMEAGGDPAKVVFSGVGKTAAEMEQALNLGIY 120
Query: 186 -VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESSAELEQLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P+ L + G CH+GS +T++ F DA M+ ID++ QG +++ ++GG
Sbjct: 180 IVFARAHALPH-LNVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIVIEHFDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P P + + R L LI EPGR++ AN V V +K N
Sbjct: 239 GLGVTY--DAETPPHPDVYAAAILARLGDRQLKLIFEPGRAIAANAGIFVTQVLYLKENS 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F ++DG+M +LIRP+LY A+Q+I + P+D+E +FD+VGPVCE+ DFLGK R+L
Sbjct: 297 DKRFAIVDGAMNDLIRPALYSAWQNI--IPVVPRDSEAYEFDIVGPVCETGDFLGKNRQL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +MAS YN + R E V
Sbjct: 355 ALAAG-DLLAVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|359394681|ref|ZP_09187734.1| Diaminopimelate decarboxylase [Halomonas boliviensis LC1]
gi|357971928|gb|EHJ94373.1| Diaminopimelate decarboxylase [Halomonas boliviensis LC1]
Length = 423
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 230/399 (57%), Gaps = 23/399 (5%)
Query: 72 DGFLYCEDV---RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
DG LY EDV R+ D T P Y+YSK R+ AY +AL G +I YA+KAN+
Sbjct: 8 DGVLYAEDVPLSRIADEYGT----PCYVYSKATFERHFRAYTEALGGHPHLICYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVN 187
N +L L KLG G +VS EL L+AG DP K +F+G K ++V A + G+ N
Sbjct: 64 NLAVLGLLAKLGAGFDIVSIGELERVLKAGGDPAKVVFSGVAKQPHEMVRALEVGIKCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+S +LE + + GK V LR+NPDVD HPY++TG K++KFGI ++ +
Sbjct: 124 VESGPELERLNRVAGELGKIAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEAVTVYE 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++ G CH+GS +T+ F DA ++ ++++R +G E+++L++GGGLG+
Sbjct: 184 LAASLPN-LQVKGLDCHIGSQLTETAPFLDALDRLLVLMERLRERGIEIEHLDLGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELV--LSR-----NLNLIIEPGRSLIANTCCLVNHVTGVK 360
Y KP D +L+ LSR L L+ EPGRS+ AN ++ V +K
Sbjct: 243 PYRDE-----KPPQPFDYASQLLARLSRWEGGEALTLLFEPGRSIAANAGVMLTRVEFLK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
TKNF ++D +M +LIRP+LY A+Q I V Q E + +DVVGPVCE+ DFLGKE
Sbjct: 298 PGETKNFAIVDAAMNDLIRPALYQAWQAIVPVD-TRQARESALYDVVGPVCETGDFLGKE 356
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
REL + G L V AGAY MAS YN + R E V
Sbjct: 357 RELAIAE-GDLLAVRSAGAYGFVMASNYNSRPRAAELMV 394
>gi|448745948|ref|ZP_21727618.1| Diaminopimelate decarboxylase [Halomonas titanicae BH1]
gi|445566676|gb|ELY22782.1| Diaminopimelate decarboxylase [Halomonas titanicae BH1]
Length = 423
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 229/399 (57%), Gaps = 23/399 (5%)
Query: 72 DGFLYCEDV---RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
DG LY EDV R+ D T P Y+YSK R+ AY +AL G +I YA+KAN+
Sbjct: 8 DGVLYAEDVPLSRIADEYGT----PCYVYSKATFERHFRAYTEALGGHPHLICYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVN 187
N +L L KLG G +VS EL L+AG DP K +F+G K ++V A G+ N
Sbjct: 64 NLAVLGLLAKLGAGFDIVSIGELERVLKAGGDPAKVVFSGVAKQPHEMVRALDVGIKCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+S +LE + + GK V LR+NPDVD HPY++TG K++KFGI ++ +
Sbjct: 124 VESRPELERLNRVAGELGKIAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEALAVYE 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++ G CH+GS +T+ F DA ++ ++++R +G E+++L++GGGLG+
Sbjct: 184 LAASLPN-LQVKGLDCHIGSQLTETAPFLDALDRLLVLMERLRERGIEIEHLDLGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELV--LSR-----NLNLIIEPGRSLIANTCCLVNHVTGVK 360
Y KP D +L+ LSR L L+ EPGRS+ AN ++ V +K
Sbjct: 243 PYRDE-----KPPQPFDYASQLLARLSRWEGGEALTLLFEPGRSIAANAGVMLTRVEFLK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
TKNF ++D +M +LIRP+LY A+Q I V Q E + +DVVGPVCE+ DFLGKE
Sbjct: 298 PGETKNFAIVDAAMNDLIRPALYQAWQAIVPVD-TRQTRESALYDVVGPVCETGDFLGKE 356
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
REL + G L V AGAY MAS YN + R E V
Sbjct: 357 RELAITE-GDLLAVRSAGAYGFVMASNYNSRPRAAELMV 394
>gi|409439272|ref|ZP_11266327.1| Diaminopimelate decarboxylase [Rhizobium mesoamericanum STM3625]
gi|408749067|emb|CCM77506.1| Diaminopimelate decarboxylase [Rhizobium mesoamericanum STM3625]
Length = 422
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 223/399 (55%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ + V PFY+YS + R+ + A +++++ YA+KAN+N
Sbjct: 8 DGVLYAEDVPVPEIAKAV-GTPFYVYSTATLERHYRVFAAAFNDVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG G +VS ELR AL AG ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGNLGAGIDVVSEGELRRALAAGIPASRIMFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK+ V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEILNHRAIKVGKRAPVSFRINPDVDARTHAKISTGKKENKFGISWERARAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT++ F DA L+ + +RA G + +++IGGGLGI Y
Sbjct: 187 TLPG-IEVTGIDMHIGSQITELQPFEDAFKLLRELVGTLRADGHNIHHVDIGGGLGIPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V+ + N ++ EPGR ++ N LV V VK G K F+++
Sbjct: 246 EDNNPPPLPDAYANIVKSQLRELNCKIVTEPGRLIVGNAGILVTEVIYVKDGGEKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LYDA+ I V + +A K DVVGPVCE+ DFL +RE+ P G
Sbjct: 306 DGAMNDLIRPTLYDAHHEIRPVVISAANAPRIKADVVGPVCETGDFLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY A TYN ++ PE V+ +I P
Sbjct: 366 LFAISSAGAYGAVQAGTYNSRLLVPEVLVKGSDFHVIRP 404
>gi|410465975|ref|ZP_11319131.1| diaminopimelate decarboxylase [Desulfovibrio magneticus str.
Maddingley MBC34]
gi|409981005|gb|EKO37643.1| diaminopimelate decarboxylase [Desulfovibrio magneticus str.
Maddingley MBC34]
Length = 412
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 229/398 (57%), Gaps = 12/398 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + G LY EDV V ++ P Y+YS + R+ A+ A L + +++
Sbjct: 2 HHFEYRG-GELYAEDVPVSTLVAAY-GTPLYVYSAATLRRHFTAFDSAFAALPHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +G G +VSG EL AL AG DP K +++G GK ++ A + G+
Sbjct: 60 KANSNLSVLKTLAAMGAGMDIVSGGELYRALAAGVDPQKIVYSGVGKRASEIEEALRAGI 119
Query: 185 FV-NVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEK 241
+ NV+S +LE + +ASR+ GK V LRINP+VDP+ HPY++TG K +KFG+ +
Sbjct: 120 LMFNVESTGELERLSAIASRL-GKTAQVSLRINPNVDPKTHPYISTGLKKNKFGLDIDHS 178
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
L + A++ P + VG CH+GS +T + F +A ++ + DK+ A G E YL++
Sbjct: 179 LAAYAKAMEL-PG-VTPVGIDCHIGSQLTTIAPFLEALDKILAFRDKLTAMGIETRYLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y P PR + + + + LI+EPGR ++ N LV K
Sbjct: 237 GGGLGIQYNEEEP--PHPREFGQALTKALGDLPITLILEPGRVIVGNAGILVTEAVYTKK 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+K+FI++D +M +LIRP+LYD+Y I V PA + E++ DVVGP+CES DFL ++R
Sbjct: 295 TPSKDFIIVDAAMNDLIRPALYDSYHAIREVRPAGR-PELN-VDVVGPICESGDFLARDR 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP G L V AGAY +M+S YN + R E V
Sbjct: 353 TLPAVAPGEHLAVFSAGAYGFTMSSNYNSRPRAAEILV 390
>gi|388255790|ref|ZP_10132971.1| diaminopimelate decarboxylase [Cellvibrio sp. BR]
gi|387939490|gb|EIK46040.1| diaminopimelate decarboxylase [Cellvibrio sp. BR]
Length = 415
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 226/389 (58%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY ED + V E P Y+YS+ T+ AY QAL +I YAIKAN+N
Sbjct: 8 NGELYVEDTPLSAVAERF-GTPCYVYSRAAFTQQYLAYAQALGSHPGMICYAIKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG G +VSG EL LRAG P++ +F+G GK +++ A G+F NV+S
Sbjct: 67 VLNMLAKLGAGFDIVSGGELERVLRAGGQPSRIVFSGVGKSADEIARALDVGIFCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK NV LR+NPDVD HPY++TG K +KFGI E+
Sbjct: 127 EAELELLAQIAAEKGKIANVSLRVNPDVDANTHPYISTGLKENKFGIAIERAPAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L + G CH+GS +T++ F DA ++ +D++ A G + +L++GGGLG+ Y
Sbjct: 187 QLPS-LAIKGLDCHIGSQLTQLTPFLDALDRLLLLVDELAASGITISHLDLGGGLGVTYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P + + ++ + R L+L+ EPGRS+ AN+ L+ V +K KNF VI
Sbjct: 246 NE--TPPPVADYMAAIKTKLGDRKLSLMFEPGRSISANSGVLLTKVMFLKPTEHKNFAVI 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M + IRPSLY A+Q I V P DA+ K+D+VGP+CE+ DFLGK+REL + G
Sbjct: 304 DAAMNDNIRPSLYQAWQDIRPVKPRVGDAK--KWDLVGPICETGDFLGKDRELAI-EAGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V GAY SM+S YN + R E V
Sbjct: 361 LLAVMSTGAYGFSMSSNYNTRGRAAEVVV 389
>gi|398378787|ref|ZP_10536941.1| diaminopimelate decarboxylase [Rhizobium sp. AP16]
gi|397724129|gb|EJK84605.1| diaminopimelate decarboxylase [Rhizobium sp. AP16]
Length = 423
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 224/399 (56%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ + V PFY+YS + R+ + +A +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFSDVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS EL+ AL AG + +F+G GK +++ +A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSVGELQRALAAGIPANRIMFSGVGKTAQEMDVALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEVLNQRAVRAGKIAPVSFRINPDVDARTHAKISTGKKENKFGISWERARTVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P + G H+GS IT++ F DA L+ ++ +R G ++ +++IGGGLGI Y
Sbjct: 187 NLPG-IDATGIDMHIGSQITELQPFEDAFKLLRELVETLRGDGHDIHHVDIGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V++ + N ++ EPGR ++ N LV V VK G K+F+++
Sbjct: 246 DDNTPPPLPDAYAHIVKDQLRGLNCKIVTEPGRLIVGNAGILVTEVIYVKDGGNKSFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V +A K D+VGPVCE+ D+L +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYEAYHEIRPVEITAANAPRIKADIVGPVCETGDYLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L V GAY A TYN ++ PE V+ +I P
Sbjct: 366 LLAVSSGGAYGAVQAGTYNSRLLVPEVLVKGSDFHVIRP 404
>gi|399543548|ref|YP_006556856.1| diaminopimelate decarboxylase [Marinobacter sp. BSs20148]
gi|399158880|gb|AFP29443.1| Diaminopimelate decarboxylase [Marinobacter sp. BSs20148]
Length = 416
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 224/386 (58%), Gaps = 7/386 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + E P Y+YS+ + R+ AY AL+ ++ YA+KAN+N +L+
Sbjct: 11 LWVEDVPLARIAEQ-HGTPAYVYSRATLERHYRAYDNALQNHPHLVCYAVKANSNLAVLD 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL +RAG +P K +F+G GK ++ A + GV NV+S+ +
Sbjct: 70 VLARLGAGFDIVSAGELERVIRAGGNPAKVVFSGVGKQPWEMRRALEVGVRCFNVESDIE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + + G K V LR+NPDVD HPY++TG K +KFGI E + P
Sbjct: 130 LDRLNAIAGELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEVAPAVYARAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L + G CH+GS +T + F DA ++ +D + QG E+ +L++GGGLG+ Y
Sbjct: 190 N-LDVRGVDCHIGSQLTTLAPFLDALDRVLALVDNLADQGVEIKHLDLGGGLGVTY--ND 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P+P ++ + + R L LI+EPGRS+ AN L+ V +K +NF +ID +
Sbjct: 247 ETPPQPGEYVEAILARLGDRKLELILEPGRSIAANAGVLLTRVEFLKCTEHRNFAIIDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY A+Q I V+P + E +D+VGPVCE+ DFLGK+R+L + G L
Sbjct: 307 MNDLIRPALYGAWQAIVPVAPHSKGDE-KAWDLVGPVCETGDFLGKDRQL-SLSAGDLLA 364
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY M+S YN + RPPE V
Sbjct: 365 VRSAGAYGFVMSSNYNTRNRPPELMV 390
>gi|241759521|ref|ZP_04757624.1| diaminopimelate decarboxylase [Neisseria flavescens SK114]
gi|241320078|gb|EER56439.1| diaminopimelate decarboxylase [Neisseria flavescens SK114]
Length = 406
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 231/392 (58%), Gaps = 20/392 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE + + E P Y+YSK +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQLPYTHLAEEF-GTPLYVYSKSALTEAFENYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 YFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIRKVAARL-GKVAPVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 -----PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ LK+VG CH+GS +T + +A ++ +D++ A+G +++L++GGG+GI
Sbjct: 175 RHASRQSHLKIVGIDCHIGSQLTDLSPLVEACERILALVDQLVAEGIVLEHLDLGGGVGI 234
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y +P V++L+ +R L L++EPGRSL+ N L+ V VK KNF
Sbjct: 235 VYQDEN--VPDLGAYAKEVQKLIGTRRLKLVLEPGRSLVGNAGALLTRVEFVKHGEEKNF 292
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + +
Sbjct: 293 VMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-E 349
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 350 EGDLLLIRSAGAYGSSMASNYNTRNRAAEVLV 381
>gi|319639010|ref|ZP_07993768.1| diaminopimelate decarboxylase [Neisseria mucosa C102]
gi|317399914|gb|EFV80577.1| diaminopimelate decarboxylase [Neisseria mucosa C102]
Length = 406
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 230/392 (58%), Gaps = 20/392 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L CE + + E P Y+YSK +T + Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LSCEHIPYSHLAEEF-GTPLYVYSKSALTEAFDNYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKVAPVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 -----PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ LK+VG CH+GS +T + +A ++ +D++ +G +++L++GGG+GI
Sbjct: 175 RHASSQSHLKIVGIDCHIGSQLTDLSPLIEACERILALVDQLVEEGIVLEHLDLGGGVGI 234
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y +P + V++L+ +R L LI+EPGRSL+ N L+ V VK KNF
Sbjct: 235 VYQDEN--VPDLGSYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNF 292
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + +
Sbjct: 293 VMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-E 349
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 350 EGDLLLIRSAGAYGSSMASNYNTRNRAAEVLV 381
>gi|90408777|ref|ZP_01216922.1| diaminopimelate decarboxylase [Psychromonas sp. CNPT3]
gi|90310121|gb|EAS38261.1| diaminopimelate decarboxylase [Psychromonas sp. CNPT3]
Length = 420
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 240/406 (59%), Gaps = 11/406 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV ++D+++ P Y+YS+ I R+ + +A +I YA+KA
Sbjct: 4 FNYQTDGRLFVEDVAIEDIIKKA-GTPAYVYSRATIERHWKGLDKAASAYPHMICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L + +LG G +VS EL ++AG DP K +F+G GK ++ A Q +F
Sbjct: 63 NSNLGVLNIMARLGSGFDIVSAGELLRVIQAGGDPKKVVFSGVGKTEIEIATALQASIFC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQW 244
N++S +L I ++ K + +RINP++D HPY++TG K +KFGI E+ L
Sbjct: 123 FNIESISELYRINSVAQSLNIKAPISIRINPNIDAGTHPYISTGLKENKFGIEIEQALNV 182
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+L A + E+K G CH+GS IT + F +A ++ ID++ G + +L++GGG
Sbjct: 183 YLLAERLEFIEIK--GVDCHIGSQITTLAPFLEALDKLLVLIDELEEVGITITHLDLGGG 240
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y + P+P + + + + + SRNL L+ EPGRS++AN L+ V +K N
Sbjct: 241 LGVPYQNETP--PEPEDYMREIIKKMGSRNLKLLFEPGRSIMANAGVLITKVEYLKINEQ 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEI---SKFDVVGPVCESADFLGKER 421
KNF ++D +M +L+RP+LY+A+Q I ++ Q + I +D+VGP+CESADFLGK+R
Sbjct: 299 KNFAIVDAAMNDLLRPALYNAWQEIIPINNKLQTSTIRPERNYDIVGPICESADFLGKDR 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L + G L V +GAY +M+S YN + RP E V S + I+
Sbjct: 359 TLSVAE-GDYLAVRSSGAYGSTMSSNYNSRCRPVEVMVDSEKAFIV 403
>gi|398831092|ref|ZP_10589271.1| diaminopimelate decarboxylase [Phyllobacterium sp. YR531]
gi|398212660|gb|EJM99262.1| diaminopimelate decarboxylase [Phyllobacterium sp. YR531]
Length = 421
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 217/389 (55%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E V V ++ + V PFY YS I R+ + + A +++++ YA+KAN+N
Sbjct: 8 DGVLYAEGVSVPEIAKAV-GTPFYCYSTATIERHFKVFSAAFADMDTLVCYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG GA +VS ELR AL AG K +F+G GK ++ LA G+ NV+S
Sbjct: 67 VLKTLARLGSGADVVSEGELRRALAAGIPADKIVFSGVGKKPSEIDLALSVGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + AGK V LRINPDVD + H ++TG +KFGI K
Sbjct: 127 EPELAILSSRAVTAGKIAPVSLRINPDVDAKTHKKISTGKSENKFGIPLAKASSIYAQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P L +VG H+GS IT ++ F DA L+ + +++A G ++ ++++GGGLGI Y+
Sbjct: 187 KLPG-LSVVGVDMHIGSQITDLEPFDDAFRLLAELVAQLKADGHDIKHVDLGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V++ + L I EPGR ++ N LV V VK +NFI++
Sbjct: 246 FDNNPPPLPDAYAQIVQKHIKPLGLKTIFEPGRLIVGNAGILVTEVIFVKEGDARNFIIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V D + DVVGPVCE+ D+LG +R+LP P G
Sbjct: 306 DAAMNDLIRPTLYDAFHTIRPVKEPKADHPRIRGDVVGPVCETGDYLGLDRDLPRPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY A TYN ++ PE V
Sbjct: 366 LIAIGTAGAYGAVQAGTYNTRLLVPEVLV 394
>gi|254492827|ref|ZP_05105998.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 1291]
gi|268598074|ref|ZP_06132241.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae MS11]
gi|226511867|gb|EEH61212.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 1291]
gi|268582205|gb|EEZ46881.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae MS11]
Length = 406
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 230/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSQSALTGAFENYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H G G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASFGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I +A+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKIAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EG--VPDLGAYARAVQKLMGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V ++ E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKNIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|407802624|ref|ZP_11149464.1| diaminopimelate decarboxylase [Alcanivorax sp. W11-5]
gi|407023260|gb|EKE35007.1| diaminopimelate decarboxylase [Alcanivorax sp. W11-5]
Length = 413
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 226/397 (56%), Gaps = 9/397 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E++ + D+ E P Y+YS+ + A+ A G + YA+KAN N
Sbjct: 8 DGQLYAEELPLSDLAERF-GTPLYVYSRAMLETQYRAFDDAFGGHPHQVCYAVKANANLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL LRAG DP++ +F+G GK +++ A + G+ NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLRAGGDPSRIVFSGVGKTADEMEAALKAGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + +R+NPDVD Q HPY++TG K++KFG+
Sbjct: 127 AAELELLNLVAGEQSMVAPISIRVNPDVDAQTHPYISTGLKDNKFGVDINDAPALYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ ++++G CH+GS +T + F DA ++ +DK+ QG + +L++GGGLG+ Y
Sbjct: 187 DLPH-IEILGVDCHIGSQLTSLGPFEDALGRVMALVDKLTLQGIAIRHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + T+ + V +L + IEPGRS++AN + V +K KNF ++
Sbjct: 246 EEQP--PTPAEYVATLLKYV-PGDLPVHIEPGRSIVANAGVFLTRVLYLKPTAHKNFAIV 302
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRPSLY A+Q I V P DA+ +D+VGPVCE+ DFLGK+R L + G
Sbjct: 303 DGAMNDLIRPSLYSAWQDI--VPLIPHDADCRHWDIVGPVCETGDFLGKDRALAL-ETGD 359
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY +MAS YN + RP E V + I+
Sbjct: 360 LLAVRSAGAYGFAMASNYNSRNRPAEIMVDGDQAFIV 396
>gi|239832987|ref|ZP_04681316.1| diaminopimelate decarboxylase [Ochrobactrum intermedium LMG 3301]
gi|444309238|ref|ZP_21144877.1| diaminopimelate decarboxylase [Ochrobactrum intermedium M86]
gi|239825254|gb|EEQ96822.1| diaminopimelate decarboxylase [Ochrobactrum intermedium LMG 3301]
gi|443487296|gb|ELT50059.1| diaminopimelate decarboxylase [Ochrobactrum intermedium M86]
Length = 421
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 222/389 (57%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G ++ E++ + ++ + V PFY+YS+ + R+ + +A G+ +++ YA+KAN+N
Sbjct: 8 NGVVHAENISLPEIAQAV-GTPFYVYSRATVERHFRVFSEAFAGMETLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG GA VS E+R AL AG K +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLAKLGAGADTVSEGEIRRALAAGIPANKIVFSGVGKTPHEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK +V LRINPDVD + H ++TG +KFGI K +
Sbjct: 127 EPELEILSARAVRAGKVASVSLRINPDVDAKTHAKISTGKSENKFGIPRVKAREAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F DA LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LDVVGIDMHIGSQIIDLEPFDDAFALMAQLVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPLPVAYAEIVARHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I+ V+ DA + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIKPVTLPKDDAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V GAY ++STYN ++ PE V
Sbjct: 366 LIAVCTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|222087349|ref|YP_002545886.1| diaminopimelate decarboxylase [Agrobacterium radiobacter K84]
gi|221724797|gb|ACM27953.1| diaminopimelate decarboxylase protein [Agrobacterium radiobacter
K84]
Length = 423
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 221/391 (56%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ + V PFY+YS + R+ + +A +++++ YA+KAN+N
Sbjct: 8 DGILYAEDVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFSDVDAMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS EL+ AL AG + +F+G GK +++ +A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGVDVVSVGELQRALAAGIPANRIMFSGVGKTAQEMDVALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEVLNQRAVRAGKIAPVSFRINPDVDARTHAKISTGKKENKFGISWERARTVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P + G H+GS IT++ F DA L+ ++ +R G ++ +++IGGGLGI Y
Sbjct: 187 NLPG-IDATGIDMHIGSQITELQPFEDAFKLLRELVETLRGDGHDIHHVDIGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V++ + N ++ EPGR ++ N LV V VK G K+F+++
Sbjct: 246 DDNTPPPLPDAYAHIVKDQLRGLNCKIVTEPGRLIVGNAGILVTEVIYVKDGGNKSFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V +A K D+VGPVCE+ D+L +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYEAYHEIRPVEITAANAPRIKADIVGPVCETGDYLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V GAY A TYN ++ PE V+
Sbjct: 366 LLAVSSGGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|284162042|ref|YP_003400665.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
gi|284012039|gb|ADB57992.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
Length = 419
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 231/398 (58%), Gaps = 16/398 (4%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
K DG L+ EDV V ++ E + P Y+ SK ++ N+EAYK+A ++ I YA+KANN
Sbjct: 3 KVIDGVLHVEDVSVVELAEEL-GTPLYITSKAKLEENIEAYKRAFP--DAEILYAVKANN 59
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNV 188
N I+ + K G GA + SG EL +A AGF K +FNGN K E++ + V +V
Sbjct: 60 NLAIMRIIAKHGFGADVFSGGELYMARLAGFPSNKLLFNGNSKSDEEIEMGIDCNVKFSV 119
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLD 247
DS +L I + GK V + R+NPD+DP+ HP +ATG K SKFGI + L+ +
Sbjct: 120 DSLDELYTIQKIAEKKGKIVEIAFRVNPDIDPKTHPKIATGLKTSKFGIPWDIALEAYKK 179
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AV+ PN +K VG HCH+GS I ++D F +A + + +I G E+ +L+IGGGL I
Sbjct: 180 AVEL-PN-VKPVGIHCHIGSQIKEIDPFVEALNRLFDLAVEIEKLGVEIRFLDIGGGLAI 237
Query: 308 DYYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
DY GA P P++ + + R+ L+ + L +EPGRSL+ NT L+ V VK
Sbjct: 238 DYTGEGA--PTPQDFANEILPVFNERKKELNSDPKLYLEPGRSLVGNTTILLTKVNAVK- 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF+ +D LIRP LY+AY + + + ++AE + +VGP+CES D L ++R
Sbjct: 295 KAYKNFVAVDAGFNLLIRPVLYNAYHRVAVANKMDKEAE-ETYTIVGPICESGDILAEDR 353
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+LP ++G + + D GAY M+S YN + R E V
Sbjct: 354 KLPKVEKGDLIAIFDTGAYGFVMSSQYNGRPRCAEVLV 391
>gi|194100049|ref|YP_002003189.1| protein LysA [Neisseria gonorrhoeae NCCP11945]
gi|193935339|gb|ACF31163.1| LysA [Neisseria gonorrhoeae NCCP11945]
Length = 406
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 230/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVAYPRLAEEF-GTPLYVYSQSALTGAFENYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I +A+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKIAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EG--VPDLGAYARAVQKLMGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V ++ E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKNIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY SMAS YN + R E V
Sbjct: 354 LDLRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|126666600|ref|ZP_01737578.1| diaminopimelate decarboxylase [Marinobacter sp. ELB17]
gi|126628988|gb|EAZ99607.1| diaminopimelate decarboxylase [Marinobacter sp. ELB17]
Length = 416
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 224/386 (58%), Gaps = 7/386 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + + E P Y+YS+ + R+ AY AL+ ++ YA+KAN+N +L+
Sbjct: 11 LWAEGVPLARIAEQ-HGTPAYVYSRATLERHYRAYDNALQNHPHLVCYAVKANSNLAVLD 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL +RAG +P K +F+G GK ++ A + GV NV+S+ +
Sbjct: 70 VLARLGAGFDIVSAGELERVIRAGGNPAKVVFSGVGKQPWEMRRALEVGVRCFNVESDIE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + + G K V LR+NPDVD HPY++TG K +KFGI E + P
Sbjct: 130 LDRLNAIAGELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEVAPAIYARAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ L + G CH+GS +T V F DA ++ +DK+ QG E+ +L++GGGLG+ Y
Sbjct: 190 H-LDVRGVDCHIGSQLTTVAPFLDALDRVLALVDKLAEQGVEIKHLDLGGGLGVTY--ND 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P+P ++ + + R L LI+EPGRS+ AN L+ V +K +NF +ID +
Sbjct: 247 ETPPQPGEYVEAILARLGDRKLELILEPGRSIAANAGVLLTRVEFLKCTEHRNFAIIDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY A+Q I V+P E +D+VGPVCE+ DFLGK+R+L + + G L
Sbjct: 307 MNDLIRPALYGAWQAIVPVAPHSNGDE-KAWDLVGPVCETGDFLGKDRQL-SLNAGDLLA 364
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY M+S YN + RPPE V
Sbjct: 365 VRSAGAYGFVMSSNYNTRNRPPELMV 390
>gi|226946776|ref|YP_002801849.1| diaminopimelate decarboxylase [Azotobacter vinelandii DJ]
gi|226721703|gb|ACO80874.1| diaminopimelate decarboxylase [Azotobacter vinelandii DJ]
Length = 415
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGTLFAEGVALSAIAARF-GTPTYVYSRAHIEERYRAYADALAGMPHLVCFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG DP + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNLLARLGAGFDIVSRGELERVLAAGGDPARVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI E+ +
Sbjct: 127 DVELERLQEVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIDIEQAEEVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F D ++ +D++ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LEVLGIDCHIGSQLTTLSPFLDTLDRLLLLVDRLAARGIVIRHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + I VRE + R L L+ EPGRS++AN L+ V +K K+F VI
Sbjct: 246 DEQP--PAPGDYIAAVRERIEGRALALVFEPGRSIVANAGVLLTRVEYLKHTEHKDFAVI 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ +++V P E+ +D+VGPVCE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAW--MDVVPVTPHGGEVCSYDLVGPVCETGDFLAKDRELALVE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|121635635|ref|YP_975880.1| diaminopimelate decarboxylase [Neisseria meningitidis FAM18]
gi|385855987|ref|YP_005902500.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240355]
gi|416179944|ref|ZP_11611246.1| diaminopimelate decarboxylase [Neisseria meningitidis M6190]
gi|416193501|ref|ZP_11617167.1| diaminopimelate decarboxylase [Neisseria meningitidis ES14902]
gi|421567137|ref|ZP_16012873.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3001]
gi|433493408|ref|ZP_20450491.1| diaminopimelate decarboxylase [Neisseria meningitidis NM586]
gi|433495461|ref|ZP_20452521.1| diaminopimelate decarboxylase [Neisseria meningitidis NM762]
gi|433503674|ref|ZP_20460628.1| diaminopimelate decarboxylase [Neisseria meningitidis NM126]
gi|120867341|emb|CAM11112.1| diaminopimelate decarboxylase [Neisseria meningitidis FAM18]
gi|325131386|gb|EGC54095.1| diaminopimelate decarboxylase [Neisseria meningitidis M6190]
gi|325137467|gb|EGC60053.1| diaminopimelate decarboxylase [Neisseria meningitidis ES14902]
gi|325204928|gb|ADZ00382.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240355]
gi|402344148|gb|EJU79289.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3001]
gi|432225953|gb|ELK81688.1| diaminopimelate decarboxylase [Neisseria meningitidis NM586]
gi|432227841|gb|ELK83546.1| diaminopimelate decarboxylase [Neisseria meningitidis NM762]
gi|432238301|gb|ELK93868.1| diaminopimelate decarboxylase [Neisseria meningitidis NM126]
Length = 414
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 229/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|237809856|ref|YP_002894296.1| diaminopimelate decarboxylase [Tolumonas auensis DSM 9187]
gi|237502117|gb|ACQ94710.1| diaminopimelate decarboxylase [Tolumonas auensis DSM 9187]
Length = 416
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L E V +++ P Y+YS+ I R+ +A+ A + +I YA+KA
Sbjct: 4 FNYREDGELLAEQCAVSELVAQY-GTPLYIYSRATIERHWKAFDAAAGDVPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVF 185
N N IL L +LG G +VSG EL + AG D K +F+G GK E++ A Q+ +
Sbjct: 63 NGNLAILNLLARLGSGFDIVSGGELARVIAAGGDAKKVVFSGVGKTEEEMRYALGQDILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + GK + +RINPD+D HPY++TG K +KFGI E+
Sbjct: 123 FNVESEPELERLNQVAGSMGKVARISIRINPDIDAGTHPYISTGLKQNKFGIPIERAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L++ G CH+GS +T++ F +A ++ ID++ A G ++ +L++GGGL
Sbjct: 183 YRYAASLPN-LQITGVDCHIGSQLTEISPFLEAVDKLLALIDELSAAGIKIHHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G++Y P P +++ + R+L L+ EPGR+++AN L V +K +
Sbjct: 242 GVNY--NDETPPHPSEYALALKQKLQDRDLTLMFEPGRAIMANAGILATKVEYLKAGEDR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPA-PQDAEISKFDVVGPVCESADFLGKERELP 424
+F ++D +M +LIRPSLY A+ +I V+ + P+DA +DVVGP+CE+ DFLGK+REL
Sbjct: 300 HFAIVDAAMNDLIRPSLYSAWMNIIPVNRSLPRDAH--HYDVVGPICETGDFLGKDRELA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LVV AGAY SMAS YN + R E V
Sbjct: 358 IAP-GDYLVVRSAGAYGFSMASNYNARSRAAEVLV 391
>gi|163781655|ref|ZP_02176655.1| diaminopimelate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
gi|159882875|gb|EDP76379.1| diaminopimelate decarboxylase [Hydrogenivirga sp. 128-5-R1-1]
Length = 422
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 234/392 (59%), Gaps = 10/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E + ++++ + P Y+YS I + AY++A G +++ YA+KAN N +
Sbjct: 20 NGKLHLEGLSLKELAQEF-GTPLYVYSASYIRERIRAYQKAFPG--ALVCYAVKANFNPE 76
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
++ + G GA +VSG EL AL+ G DP++ ++ G GK + +L LA ++ + + NV+S
Sbjct: 77 VVRVAGEEGAGADIVSGGELVAALKGGIDPSRIVYAGVGKTVPELELAIEKEILMFNVES 136
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L + +A R+ GK+ + +R+NPDVDP+ HPY++TG K SKFG+ E +
Sbjct: 137 RDELYVLDEIAGRL-GKRARIAIRVNPDVDPKTHPYISTGMKKSKFGVDFETAREEYRLA 195
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ N L++VG HCH+GS + V +R+A +V + +GFE++YL+IGGGLGI Y
Sbjct: 196 RELKN-LEVVGIHCHIGSQLLDVSPYREAVQKVVELYRDLTDEGFEINYLDIGGGLGIKY 254
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P L V L+ + +I+EPGRS+ N L+ V +K K+FI+
Sbjct: 255 KPEDRE-PSPEELAREVLPLLEGVSAQIILEPGRSITGNAGLLIAQVQFLKDKEIKHFII 313
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M +L+RP++YDAY H+ V ++ I+ D+VGP+CE+ DFL K+R + +RG
Sbjct: 314 VDAGMNDLVRPAIYDAYHHVVPVESKGREHIIA--DIVGPICETGDFLAKDRRIEFLERG 371
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ V AGAY +MAS YN++ RP E V +
Sbjct: 372 DYIAVLSAGAYGFAMASHYNVRPRPAEVLVEN 403
>gi|254674321|emb|CBA10105.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha275]
Length = 406
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 225/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LRINPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAAHLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ-Q 180
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 181 PN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 D--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R + + G L
Sbjct: 298 AMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC-EEGDLL 354
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
++ AGAY SMAS YN + R E V
Sbjct: 355 LIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|385340824|ref|YP_005894696.1| diaminopimelate decarboxylase [Neisseria meningitidis G2136]
gi|416208574|ref|ZP_11621122.1| diaminopimelate decarboxylase [Neisseria meningitidis 961-5945]
gi|433467974|ref|ZP_20425422.1| diaminopimelate decarboxylase [Neisseria meningitidis 87255]
gi|325141466|gb|EGC63940.1| diaminopimelate decarboxylase [Neisseria meningitidis 961-5945]
gi|325199068|gb|ADY94524.1| diaminopimelate decarboxylase [Neisseria meningitidis G2136]
gi|432201169|gb|ELK57253.1| diaminopimelate decarboxylase [Neisseria meningitidis 87255]
Length = 414
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/387 (39%), Positives = 225/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LRINPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAAHLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ-Q 180
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 181 PN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 D--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R + + G L
Sbjct: 298 AMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC-EEGDLL 354
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
++ AGAY SMAS YN + R E V
Sbjct: 355 LIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|90414245|ref|ZP_01222225.1| putative diaminopimelate decarboxylase [Photobacterium profundum
3TCK]
gi|90324692|gb|EAS41233.1| putative diaminopimelate decarboxylase [Photobacterium profundum
3TCK]
Length = 416
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 225/394 (57%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + +G L+ ED+ + ++ E P Y+YS+ + R+ A+ QA+ +I YA+KA
Sbjct: 4 FNYQPNGQLWAEDIALTELAERY-GTPLYVYSRATLERHWNAFDQAVTDHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNVLARLGSGFDIVSQGELERVITAGGDPAKVVFSGVGKTAVEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD Q HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNQVASELGVIAPISLRINPDVDAQTHPYISTGLRDNKFGIFFERAVEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L +VG CH+GS +T +D F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LNVVGMDCHIGSQLTNIDPFIDATDRLLALIDTLKAEGIVIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y LP R L L LI EPGR++ AN L+ V +K K
Sbjct: 242 GVTYSEEQPPLPSEYATALLAR-LGEHSELELIFEPGRAIAANAGVLLTRVEFLKHTDYK 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +LIRP+LY A+Q+I V P+ E +D+VGP+CE+ DF+GK+REL
Sbjct: 301 NFAIVDAAMNDLIRPTLYQAWQNI--VPVVPRKGETKTYDLVGPICETGDFIGKDRELCL 358
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 359 AP-GDLLAVRSAGAYGFVMSSNYNTRTRAAEIMV 391
>gi|255065336|ref|ZP_05317191.1| diaminopimelate decarboxylase [Neisseria sicca ATCC 29256]
gi|255050161|gb|EET45625.1| diaminopimelate decarboxylase [Neisseria sicca ATCC 29256]
Length = 406
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTEAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLVEACERILILVDRLADEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 --TIPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLARVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY IE V P P A ++VGP+CE+ DFLGK+R L + G
Sbjct: 298 AMNDLMRPALYDAYHRIEAVEPKNIPPLTA-----NIVGPICETGDFLGKDRTLAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV+ AGAY SMAS YN + R E V
Sbjct: 352 DLLVIRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|153002477|ref|YP_001368158.1| diaminopimelate decarboxylase [Shewanella baltica OS185]
gi|151367095|gb|ABS10095.1| diaminopimelate decarboxylase [Shewanella baltica OS185]
Length = 414
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 153/387 (39%), Positives = 223/387 (57%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E +V + +T P Y+YS+ + R+ A+ A+ +I YA+KAN N +L
Sbjct: 11 LHAEGCQVAYLAQTY-GTPLYIYSRATLERHWHAFNNAVADHPHLICYAVKANANLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL + AG DP K +F+G GK ++ A G++ NV+S +
Sbjct: 70 VLARLGSGFDIVSGGELARVMEAGGDPAKVVFSGVGKTAAEMEQALNLGIYCFNVESSAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
LE + +VA R+ GK V LRINPDVD HPY++TG K +KFGI ++ + A
Sbjct: 130 LEQLNLVAGRL-GKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFARAHAL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P+ LK+ G CH+GS +T++ F DA M+ ID++ QG +++ ++GGGLG+ Y
Sbjct: 189 PH-LKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGLGVTY--D 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + R L LI EPGR++ AN V V +K N K F ++DG
Sbjct: 246 AETPPHPDVYAAAILARLGDRQLKLIFEPGRAIAANAGIFVTQVLYLKENSDKRFAIVDG 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +LIRP+LY A+Q+I + P+D+E +FD+VGPVCE+ DFLGK R+L L
Sbjct: 306 AMNDLIRPALYSAWQNI--IPVVPRDSEAYEFDIVGPVCETGDFLGKNRQLALAAG-DLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 363 AVRSSGAYGFAMASNYNTRPRAAEVMV 389
>gi|298369659|ref|ZP_06980976.1| diaminopimelate decarboxylase [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282216|gb|EFI23704.1| diaminopimelate decarboxylase [Neisseria sp. oral taxon 014 str.
F0314]
Length = 406
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 154/390 (39%), Positives = 223/390 (57%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LHCEQVPYSRLAEEF-GTPLYVYSQSALTEAFENYQTAFAALSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALHAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A A
Sbjct: 122 IDRIQKVAERLGKTAYVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHA--AR 179
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ LK++G CH+GS +T + +A ++ +D++ +G +++L++GGG+GI Y
Sbjct: 180 QSHLKIIGIDCHIGSQLTDLSPLIEACERILILVDRLADEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 --TVPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPA---PQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V P P A D+VGP+CE+ DFL K R L + G
Sbjct: 298 AMNDLMRPALYDAYHHIEAVEPKNIPPLTA-----DIVGPICETGDFLAKGRTLAC-EAG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV AGAY SMAS YN + R E V
Sbjct: 352 DLLVVRSAGAYGASMASNYNTRNRAAEVLV 381
>gi|308271344|emb|CBX27952.1| Diaminopimelate decarboxylase [uncultured Desulfobacterium sp.]
Length = 427
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 229/391 (58%), Gaps = 11/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LYCE+V V+++++ + P Y+YS + R+ +A+ A +G+N ++ ++ KAN N
Sbjct: 18 DKELYCENVPVRNIVQKI-GTPLYIYSHATLKRHFKAFNDAFKGVNKLVCFSAKANTNLA 76
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL KLG G +VSG EL L+AG+ K +++G GK ++++ A + G+ + NV+S
Sbjct: 77 ILSLFSKLGGGLDIVSGGELYRGLKAGYASNKIVYSGVGKRIDEIDYALKMGILMFNVES 136
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + KK V +R+NPDVDP+ HPY++TG K +KFGI ++ ++A K
Sbjct: 137 MEELEIVDQRAGLLKKKAPVAIRVNPDVDPKTHPYISTGMKKNKFGIN---IEAAMEAYK 193
Query: 251 --AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A +K++G CH+GS IT+ F+DA ++ I + A + YL++GGGLGI
Sbjct: 194 VAAKLKNIKVIGLDCHIGSQITQTGPFKDALYILKTMIKDLAACKINIKYLDLGGGLGIT 253
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P P + ++E++ + LI EPGR ++ N LV V K+ G K FI
Sbjct: 254 YNDEEP--PDPVEYANAIKEVIGDTKVKLIFEPGRVIVGNAGILVTKVLYRKSTGVKEFI 311
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D M +L+RP+LY+A+ I+ V D E K D+VGP+CES DFL +R + ++
Sbjct: 312 IVDAGMNDLVRPTLYEAFHAIKPV--VDSDNEEIKADIVGPICESGDFLALDRNIQKVEQ 369
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V +GAY M+S Y +++ E V
Sbjct: 370 GDLLAVMSSGAYGFVMSSNYCSRLKLAEVMV 400
>gi|82701675|ref|YP_411241.1| diaminopimelate decarboxylase [Nitrosospira multiformis ATCC 25196]
gi|82409740|gb|ABB73849.1| diaminopimelate decarboxylase [Nitrosospira multiformis ATCC 25196]
Length = 418
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 228/389 (58%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V+++ + P Y YS+ +T + A G + ++ YA+KAN+N
Sbjct: 11 NGHLWAESVQLERIALEF-GTPCYAYSRAALTTAYCEFDDAFAGRDHLVCYAVKANSNLG 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL L +LG G +VSG EL+ L+AG DP K +F+G GK ++ A + G+ NV+S
Sbjct: 70 ILNLLARLGSGFDIVSGGELQRVLKAGGDPQKIVFSGVGKQPAEMKAALEAGILCFNVES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + GK V LR+NPDVD + HPY++TG K +KFGI ++ + + +
Sbjct: 130 EAELHGLNRVAGEMGKVAPVSLRVNPDVDAKTHPYISTGLKENKFGIPFDEAEALYASAQ 189
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A N +++ G CH+GS +T++ F + M+ +D++ AQG E+++L++GGGLGI Y
Sbjct: 190 ALGN-VRVAGLDCHIGSQLTELAPFIETCKKMLGLLDRLEAQGLEIEHLDLGGGLGIRY- 247
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
G P R ++ +R +V +R ++IEPGRSL+ N L+ V +K ++F ++
Sbjct: 248 -AGENPPSAREYVEALRSVVGNRRQKILIEPGRSLVGNAGVLLTTVEYLKPTPHRDFAIV 306
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY AY I L A + + + VVGPVCE+ DFLG +R L +G
Sbjct: 307 DAAMNDLMRPALYKAYHEI-LPVVARNEMDAKTYQVVGPVCETGDFLGHDRHLALA-QGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MSM+S YN + R E +
Sbjct: 365 LLAVMSAGAYGMSMSSNYNARPRAAEVMI 393
>gi|54310576|ref|YP_131596.1| diaminopimelate decarboxylase [Photobacterium profundum SS9]
gi|46915019|emb|CAG21794.1| putative diaminopimelate decarboxylase [Photobacterium profundum
SS9]
Length = 416
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/394 (38%), Positives = 227/394 (57%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + +G L+ ED+ + ++ E P Y+YS+ + R+ A+ QA+ +I YA+KA
Sbjct: 4 FNYQPNGQLWAEDIALTELAERY-GTPLYVYSRATLERHWNAFDQAVIDHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNVLARLGSGFDIVSQGELERVITAGGDPAKVVFSGVGKTAVEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD Q HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNQVASELGLVAPISLRINPDVDAQTHPYISTGLRDNKFGIFFERAVEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L +VG CH+GS +T +D F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LNVVGMDCHIGSQLTNIDPFIDATDRLLALIDTLKAEGIVIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y LP R L +L LI EPGR++ AN L+ V +K K
Sbjct: 242 GVTYNEEQPPLPSEYASALLAR-LGEHSDLELIFEPGRAIAANAGVLLTRVEFLKHTDYK 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +LIRP+LY A+Q+I V P++ E +D+VGP+CE+ DF+GK+REL
Sbjct: 301 NFAIVDAAMNDLIRPTLYQAWQNI--VPVVPREGEAKTYDLVGPICETGDFIGKDRELCL 358
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 359 AP-GDLLAVRSAGAYGFVMSSNYNTRTRAAEIMV 391
>gi|118594281|ref|ZP_01551628.1| diaminopimelate decarboxylase [Methylophilales bacterium HTCC2181]
gi|118440059|gb|EAV46686.1| diaminopimelate decarboxylase [Methylophilales bacterium HTCC2181]
Length = 415
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 235/389 (60%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G + E++ V ++ + + P Y+YSK I + ++++A + N +I +A+KAN N
Sbjct: 10 NGKYFIENIAVDEIEKKFDT-PAYVYSKKSILDSYRSFEEAFKTSNHLICFAVKANPNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL L G G +VSG EL+ + A DP K +F+G GK +++ LA + N++S
Sbjct: 69 ILNLLANHGAGFDIVSGGELQRVIAAKGDPKKVVFSGIGKSSKEIELAIHHQILAFNIES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L I ++ GK N+ +R+NP+VD + HPY++TG K++KFG+ +E+ L +
Sbjct: 129 EPELYRIQAIAQKMGKIANISVRVNPNVDAKTHPYISTGLKDNKFGV-DEQKAIELYKIA 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ + + + G CH+GS IT++ F D+ +V IDK++ G + +L+IGGG+GI+Y
Sbjct: 188 NNMDSIAIRGIDCHIGSQITELSPFIDSIAKLVGIIDKLKVLGIHIAHLDIGGGIGINYE 247
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P + + + L+ +NL +I EPGR+++ L+ V VK TKNF +I
Sbjct: 248 NEKP--PNFKAYAEAILPLLEKQNLKIIFEPGRAILGKAGVLLTKVEYVKKGSTKNFAII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPSLY+AY I S + + + ++FDVVGPVCE+ DF+GK+R L + + G
Sbjct: 306 DAAMNDLMRPSLYNAYHDIINTSQSSESS--AQFDVVGPVCETGDFIGKDRML-SLEEGN 362
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V D GAY MSM+S YN ++RP E V
Sbjct: 363 VLAVVDVGAYGMSMSSNYNSRVRPVELLV 391
>gi|385329223|ref|YP_005883526.1| diaminopimelate decarboxylase [Neisseria meningitidis alpha710]
gi|308390075|gb|ADO32395.1| diaminopimelate decarboxylase [Neisseria meningitidis alpha710]
Length = 414
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 157/395 (39%), Positives = 230/395 (58%), Gaps = 26/395 (6%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YSK +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSKSALTEAFENYQTAFATLNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VS EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSDGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKVAPVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 -----PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ LK+VG CH+GS +T + +A ++ +D++ +G +++L++GGG+GI
Sbjct: 175 RHASRQSHLKIVGIDCHIGSQLTDLSPLVEACERILVLVDQLADEGIVLEHLDLGGGVGI 234
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF
Sbjct: 235 VYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNF 292
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELP 424
+++D +M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R +
Sbjct: 293 VMVDAAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIA 347
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 348 C-EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|421486522|ref|ZP_15934066.1| diaminopimelate decarboxylase [Achromobacter piechaudii HLE]
gi|400195226|gb|EJO28218.1| diaminopimelate decarboxylase [Achromobacter piechaudii HLE]
Length = 430
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/402 (37%), Positives = 232/402 (57%), Gaps = 17/402 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + + LY EDV + + + P Y+YS+ + E Y+ A+ ++ Y +
Sbjct: 14 HPYFQYRNNVLYAEDVPLDHLAHGLGT-PLYVYSRAALKAAWETYRSAVGQRPVLVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQE 182
KAN+N +L+ +LG G +VSG EL+ AL AG DP+K +F+G GK ++ LAAQ
Sbjct: 73 KANSNLAVLKEFVRLGAGFDIVSGGELKRALAAGADPSKIVFSGVGKQAWEMRDALAAQV 132
Query: 183 GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
F NV+S +L + + G V LR+NPDVD Q HPY++TG K +KFGI +
Sbjct: 133 KCF-NVESVAELHRLSEVAENMGVLAPVSLRVNPDVDAQTHPYISTGLKENKFGI---AI 188
Query: 243 QWFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
LDA + + L +VG CH+GS +T + + DA +++ ID + +G + +L+
Sbjct: 189 DAALDAYRTAQSLPGLDIVGVDCHIGSQLTDISPYFDALEKLLDLIDTLDQEGIRIAHLD 248
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVT 357
+GGGLGI Y P P+ L+D V E + +R +L+L++EPGRSL+ N L+ V
Sbjct: 249 LGGGLGIRY--ADETPPSPKALLDRVFERLNARGHGHLHLVLEPGRSLVGNAGVLLTTVQ 306
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K +NF ++D +M +L+RP+LYDA+ + + P D + +D+VGPVCESAD+L
Sbjct: 307 YLKHAEARNFAIVDAAMNDLLRPALYDAFHGVRALRPRAGDP--TPYDIVGPVCESADWL 364
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++R L +G L V AGAY M+MAS YN + R E V
Sbjct: 365 ARQRPLAL-QQGDVLAVESAGAYSMAMASNYNTRARAAEVMV 405
>gi|261378590|ref|ZP_05983163.1| diaminopimelate decarboxylase [Neisseria cinerea ATCC 14685]
gi|269144922|gb|EEZ71340.1| diaminopimelate decarboxylase [Neisseria cinerea ATCC 14685]
Length = 406
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 230/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPHLAEEF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R++ K V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARLS-KTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EH--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|375335593|ref|ZP_09776937.1| diaminopimelate decarboxylase [Succinivibrionaceae bacterium WG-1]
Length = 418
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 234/403 (58%), Gaps = 9/403 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +K+DG LY + + + D+ + P Y+YS+ +T N + +A +G+ ++ YA+KA
Sbjct: 4 FERKSDGKLYADGIAINDLAKQY-GTPLYIYSQKTLTDNFNGFNKAADGVEHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N IL + KLG G +VSG EL + AG DP K +++G K + ++ A G+
Sbjct: 63 NSNLAILGLMAKLGAGFDIVSGGELARVVEAGGDPKKVVYSGVAKSVAEIEYALNLGILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE I ++ KK + +R+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 123 FNVESEAELERINEVAKSLNKKAPISVRVNPDVDAGTHPYISTGLKTNKFGVPIER-AFL 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
L + +++ G CH+GS +T + F DA ++ ID++ + ++ ++++GGGL
Sbjct: 182 LYKHATTLSNIEIKGIDCHIGSQLTSLQPFSDALDRILLLIDRLEKENIKLHHIDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y V P P +D + + RNL L+ EPGR+++AN LV K +
Sbjct: 242 GVVY--KDEVPPTPEAYMDNFKAKLKGRNLVLVCEPGRAMVANAGVLVAKCEYTKAGEVR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPA-PQDAEISKFDVVGPVCESADFLGKERELP 424
+F ++D +M ++IRPSLY A+ +IE + +D + +D+VGP+CE+ DFLGKER L
Sbjct: 300 DFCIVDTAMNDMIRPSLYSAWMNIEEADRSLTRDEHV--YDIVGPICETGDFLGKERNLK 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G LV+ AGAY +M+S YN ++R E V+ S II
Sbjct: 358 VAS-GDYLVMFGAGAYGFAMSSNYNSRVRAAEVMVKDDKSKII 399
>gi|121602458|ref|YP_988394.1| diaminopimelate decarboxylase [Bartonella bacilliformis KC583]
gi|421760214|ref|ZP_16197033.1| diaminopimelate decarboxylase [Bartonella bacilliformis INS]
gi|120614635|gb|ABM45236.1| diaminopimelate decarboxylase [Bartonella bacilliformis KC583]
gi|411175931|gb|EKS45952.1| diaminopimelate decarboxylase [Bartonella bacilliformis INS]
Length = 424
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 228/406 (56%), Gaps = 7/406 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + + V PFY YS + + + Y++A + S+I YA+KA
Sbjct: 3 FFSYHQGELHAEGLSLSTLAKDV-GTPFYCYSSGALVAHFKEYQEAFHDMPSLIAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L G GA +VS ELR AL G P + +++G GK + ++ A + +F
Sbjct: 62 NSNQAVLRILAAKGAGADVVSEGELRRALAVGITPQRIVYSGVGKTVREIDFALSQDIFC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + K + LRINPDVD + H + TG ++KFGI L
Sbjct: 122 FNVESEPELEQLSARAVALSKTARISLRINPDVDAKTHKKITTGRFDNKFGI---PLSLA 178
Query: 246 LDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A K A L++ G H+GS I + F DA ++ +++ + +G+ + +++IGG
Sbjct: 179 CSAYKKAAQLPGLQVRGMDMHIGSQICDLKPFEDAFLIAADFVRHLWREGYAITHIDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y+ ++P P + VR+ + +N+I+EPGRS+ + LV V +K
Sbjct: 239 GLGISYHPEQNMVPSPADYAALVRKHIAPLGINIILEPGRSIAGHAGVLVTSVIYLKRGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF+V+DG+M + +RP+LYDA+Q + V AP+DA + D+VGPVCE+ D+LG R L
Sbjct: 299 GRNFVVVDGAMNDFLRPTLYDAWQTVVPVKKAPEDAPLIMADIVGPVCETGDYLGLNRSL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G L + AGAY MASTYN ++ PE V++ +I P
Sbjct: 359 PMVAAGDLLAITGAGAYGAVMASTYNSRLLVPEILVQNTRYDVIRP 404
>gi|222149957|ref|YP_002550914.1| diaminopimelate decarboxylase [Agrobacterium vitis S4]
gi|221736939|gb|ACM37902.1| diaminopimelate decarboxylase [Agrobacterium vitis S4]
Length = 423
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 229/399 (57%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V D+ + V PFY YS + R+ + +A +G++S++ YA+KAN+N
Sbjct: 8 DGILHAEDVSVPDIAKAV-GTPFYCYSTATLERHYRVFSEAFDGVDSMVCYAVKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL AG P++ +F+G GK ++ L + G++ NV+S
Sbjct: 67 VLKTLGQLGAGVDVVSEGELRRALAAGIPPSRILFSGVGKTPSEMDLGLEVGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + AGK +V RINPDVD H ++TG K +KFGI E+ +
Sbjct: 127 EPELDVLNQRALKAGKTAHVSFRINPDVDAGTHAKISTGRKENKFGISYERARAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ +K+ G H+GS IT + F +A L+ + + +RA+G +D++++GGGLGI Y
Sbjct: 187 SLEG-IKVTGIDMHIGSQITDLQPFAEAFKLLRDLVTTLRAEGHTIDHVDVGGGLGIPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V++ + S + ++ EPGR ++ N LV V VK G K F+++
Sbjct: 246 DDNNPPPDPAAYAAIVKQQLASLDCRIVAEPGRLIVGNAGILVTEVIYVKDGGNKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ + V + A + DVVGPVCE+ D+L +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAHHELRPVLLSAASAPRIRADVVGPVCETGDYLALDREMSMPRPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY +STYN + PE V+ +I P
Sbjct: 366 LIAIGSAGAYGAVQSSTYNTRRLVPEVLVKGDQFHVIRP 404
>gi|90416170|ref|ZP_01224102.1| diaminopimelate decarboxylase [gamma proteobacterium HTCC2207]
gi|90331895|gb|EAS47109.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2207]
Length = 421
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 230/400 (57%), Gaps = 13/400 (3%)
Query: 63 VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGY 122
+ H S + DG L+ E + + + P Y+YSK I+ N AY+ AL +I Y
Sbjct: 3 MHHAISSQ-DGNLFIESTALSTIAGQL-GTPCYVYSKAAISNNFLAYQSALVDKEHLICY 60
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+KAN+N +L+ L +LG G +VS EL LRAG DP K +F+G K ++ A +
Sbjct: 61 AVKANSNIAVLQTLAELGAGFDIVSIGELERVLRAGGDPAKVVFSGVAKTASEMQRALEL 120
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NE 240
G+ NV+SE +LE + + G V LR+NPDVD Q HPY++TG K +KFGI N
Sbjct: 121 GIHCFNVESEAELELLNSTASSCGATAAVSLRVNPDVDAQTHPYISTGLKENKFGIDINL 180
Query: 241 KLQWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
Q + A + AH N +VG CH+GS + + F A ++ +D++ G + ++
Sbjct: 181 AAQVYQRAAQMAHIN---VVGVDCHIGSQLVDIAPFVSALERLLALVDELAGLGIALKHI 237
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
+IGGGLG+ Y P P++ + + L++ R+ L++EPGRS+ AN ++ V +
Sbjct: 238 DIGGGLGVRYDDEEP--PTPQSYMSAILPLLMDRSETLVLEPGRSITANAGVMLTQVQYL 295
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K+NG KNF ++D +M ++IRP+LY A+ I+ +S ++E + +DVVGPVCE+ DFL K
Sbjct: 296 KSNGEKNFAIVDAAMNDMIRPALYQAWMDIQSISTG--NSESAVYDVVGPVCETGDFLAK 353
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+R L G L + AGAY M+S YN + R PE V
Sbjct: 354 DRPLSIC-AGDYLCLMSAGAYGFVMSSNYNSRPRAPEVMV 392
>gi|300021574|ref|YP_003754185.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans ATCC
51888]
gi|299523395|gb|ADJ21864.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans ATCC
51888]
Length = 423
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/406 (36%), Positives = 222/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K +G L+ EDV + + + V PFY+YS + R+ + +A ++I +A+
Sbjct: 2 HHFHYK-NGILHAEDVSLARIADEV-GTPFYVYSTATLERHYKVLAEAFRDQKALICFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L + +LG G +VS ELR A AG +K IF G GK ++ A +EG+
Sbjct: 60 KANSNQAVLATMARLGAGMDVVSEGELRRARAAGVPASKIIFAGVGKTRGEMAYALEEGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + GK ++ +R+NPDVD + H ++TG +KFG+ E +
Sbjct: 120 LGFNVESEPELLALSEVATALGKTASIAIRVNPDVDAKTHAKISTGKAENKFGVPFEDAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P LK+ G H H+GS IT + FRDA L+ + + A G +++L+IGG
Sbjct: 180 ELYARAATLPG-LKISGIHMHIGSQITDLAPFRDAFALLHDLARDLIADGIRLEHLDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y + P P V+ + L +++EPGR ++ N LV VT VK
Sbjct: 239 GLGVPYRGANDIPPTPDEYAAVVKAALGDLGLKIVLEPGRMIVGNAGLLVTRVTYVKEGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F ++D +M +LIRP+LY+AY I V+ D + D+VGPVCE+ DFL ++R L
Sbjct: 299 DKTFTIVDAAMNDLIRPTLYEAYHEIWPVAEQRNDMAPVQQDIVGPVCETGDFLAEDRAL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P + G L V AGAY M+STYN ++ PE V ++ P
Sbjct: 359 PPSEPGDLLAVMTAGAYGAVMSSTYNTRLLVPEVLVSGDRYAVVRP 404
>gi|91791757|ref|YP_561408.1| diaminopimelate decarboxylase [Shewanella denitrificans OS217]
gi|91713759|gb|ABE53685.1| diaminopimelate decarboxylase [Shewanella denitrificans OS217]
Length = 414
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 225/390 (57%), Gaps = 10/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E V ++ + P Y+YS+ + R+ A+ A+ +I YA+KAN+N
Sbjct: 8 DQNLFAESCSVAEIAQQ-HGTPVYIYSRATLERHWRAFDDAVGTHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL + AG DP K +F+G GK +E++ A + G++ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELARVIEAGGDPKKVVFSGVGKTVEEMQQALELGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL-QWFLDAV 249
+LE + + ++ K V LRINPDVD HPY++TG K +KFGI E+ Q F+ A
Sbjct: 127 SAELEQLNLVAQSLNTKAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEQVFVRA- 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A + + + G CH+GS +T++ F DA ++ +D++ A G E+ +L++GGGLG+ Y
Sbjct: 186 -AALSHIDVKGVDCHIGSQLTELKPFLDAMDRLLGLVDRLTALGIELSHLDVGGGLGVPY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P+ + E + R L LI EPGR++ AN V V +K N K F +
Sbjct: 245 --DNETPPAPQVYAAALVERLGERKLTLIFEPGRAIAANAGIFVTQVLYLKENSNKRFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+DG+M +L+RP+LY A+Q I V + DA FD+VGPVCE+ DFLGK+R+L G
Sbjct: 303 VDGAMNDLLRPALYSAWQKIIPVQQS--DAATQAFDIVGPVCETGDFLGKDRQLAVV-AG 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + GAY +M+S YN + R E V
Sbjct: 360 DLLAIRSCGAYGFAMSSNYNSRPRVAEIMV 389
>gi|289548601|ref|YP_003473589.1| diaminopimelate decarboxylase [Thermocrinis albus DSM 14484]
gi|289182218|gb|ADC89462.1| diaminopimelate decarboxylase [Thermocrinis albus DSM 14484]
Length = 416
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 149/394 (37%), Positives = 229/394 (58%), Gaps = 9/394 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V ++++ E P Y+YS I + Y+++ G ++I YA+KAN N I+
Sbjct: 16 LFLEGVSLRELAEKY-GTPLYVYSASYIRDRLREYRESFPG--ALICYAVKANFNPHIVS 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
+ G GA +VSG EL +AL AG +P++ ++ G GK +++LV A + + + NV+S +
Sbjct: 73 LMAGEGAGADIVSGGELYVALMAGVNPSRIVYAGVGKTVKELVEAIKADILMFNVESRME 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + GKKV + +R+NP VDP+ HPY+ATG K SKFGI ++ + +
Sbjct: 133 LEILNQLGEQLGKKVRISIRVNPHVDPKTHPYIATGMKKSKFGIDIDRAEEEYRYALSMK 192
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG HCH+GS I + +A +V+ + QG E+ YL+IGGGLGI Y
Sbjct: 193 N-IQVVGVHCHIGSQILDTSPYVEAVSKVVDLYRSLEDQGIELQYLDIGGGLGIKYKPED 251
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
L P L + ++ +++EPGRSL+ N L+ V VK G K+F+++D
Sbjct: 252 RAL-TPMELSSALSPILQKVKATVVLEPGRSLVGNAGVLITQVQFVKDKGEKHFVIVDAG 310
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP++YDAY HI V + + ++ DVVGP+CE+ DFL K+R+L RG L
Sbjct: 311 MNDLIRPAIYDAYHHILPVVKRGRPSIVT--DVVGPICETGDFLAKDRQLEEVGRGDYLA 368
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV-RSLISII 466
V AGAY +M+S YN++ R E V R + +I
Sbjct: 369 VLSAGAYGFAMSSHYNVRPRACEVLVDRGYVRVI 402
>gi|381167721|ref|ZP_09876927.1| diaminopimelate decarboxylase [Phaeospirillum molischianum DSM 120]
gi|380683094|emb|CCG41739.1| diaminopimelate decarboxylase [Phaeospirillum molischianum DSM 120]
Length = 428
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 219/391 (56%), Gaps = 7/391 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRN--VEAYKQALEGLNSIIGYAIKANNN 129
DG L+ E V + + V PFY YS I R+ V A A GL + I +A KAN N
Sbjct: 8 DGVLFAEGVSIPRIAADV-GTPFYCYSTATIERHYTVLAESLAAAGLKATICFACKANPN 66
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
++ L +LG GA +VS ELR AL AG + +F+G GK ++L A + G+ +NV
Sbjct: 67 LAVIRTLSRLGAGADVVSEGELRRALAAGVPAERIVFSGVGKTRDELAFAIESGIMQINV 126
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+SE +L + + AG+++ V +R+NPDVD H + TG K +KFGI +++
Sbjct: 127 ESEPELLMLSELATAAGREIEVAIRVNPDVDANTHAKITTGKKENKFGIEWTRVREVYAI 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+A P L V CH+GS +T++ FR+A + + + + +R+ G ++ L++GGGLG+
Sbjct: 187 ARALPG-LVPVAVACHIGSQLTEIGPFREAFLRLRDLVQVLRSDGTDIRRLDLGGGLGVP 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y G P P + E + ++++EPGR L+ N LV+ V VKT T+ F+
Sbjct: 246 Y--DGETPPSPAAYAGAIAETLGDLGCSVLVEPGRLLVGNAGLLVSSVVRVKTGATRTFV 303
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
V+D +M +L+RP+LYDAY I V+ + E D+VGPVCE+ D ++R LP
Sbjct: 304 VVDAAMNDLMRPALYDAYHAIHPVTEPSAEVEAVPVDIVGPVCETGDTFARQRPLPPVQA 363
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LV AGAY +MASTYN + PE V
Sbjct: 364 GDLLVFATAGAYGAAMASTYNSRPLVPEVMV 394
>gi|375267018|ref|YP_005024461.1| diaminopimelate decarboxylase [Vibrio sp. EJY3]
gi|369842338|gb|AEX23482.1| diaminopimelate decarboxylase [Vibrio sp. EJY3]
Length = 417
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQY-GTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGDLGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T ++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLTNHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+D E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRDGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|374855371|dbj|BAL58230.1| diaminopimelate decarboxylase [uncultured prokaryote]
Length = 413
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 232/391 (59%), Gaps = 13/391 (3%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G LYCEDV ++++++ P Y+YS I ++ K +L +++I Y++KAN+N I
Sbjct: 9 GELYCEDVPLKEIVKFT-GTPVYIYSASSIRASIRRLKHSLP-TDALICYSLKANSNLSI 66
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L +R+ GCGA +VSG EL ALRAG P K +F+G GK +++ A + +F +NV+S
Sbjct: 67 LRIVREEGCGADVVSGGELFRALRAGISPEKIVFSGVGKTEQEIEFAVKSDLFLINVES- 125
Query: 192 FDLENIV--VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDA 248
FD +V +A R+ GKK N+ +R+NPDV H Y+ TG K +KFGI E ++ ++ A
Sbjct: 126 FDELYLVNEIAGRL-GKKANISIRVNPDVSANTHDYIKTGTKYNKFGIPEENAIEAYMKA 184
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
K L ++G HCH+GS I +D + A + + + +I+ +G +++ ++ GGG+GI
Sbjct: 185 SKL--KNLNIIGIHCHIGSQILSLDEYTHAFEKIKSLLLRIKGEGIKIEVIDFGGGMGIR 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y + + E+V+S ++EPGR ++ LV + +K N KNFI
Sbjct: 243 YREED-IQFDISAYGRLIHEIVISTGTRAVVEPGRYVVGEAGILVGRILYLKKNLHKNFI 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ D M +LIRPSLY+AY ++ V ++ E+ +FDVVGPVCES DF+ K +LP +
Sbjct: 302 ITDIGMNDLIRPSLYNAYHQVKTVD--EREGELEEFDVVGPVCESGDFIRKNVKLPPVSK 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G + V AGAY SM+S YN + RP E V
Sbjct: 360 GELIAVFSAGAYGFSMSSNYNSRPRPAEVLV 390
>gi|330999054|ref|ZP_08322778.1| diaminopimelate decarboxylase [Parasutterella excrementihominis YIT
11859]
gi|329575641|gb|EGG57172.1| diaminopimelate decarboxylase [Parasutterella excrementihominis YIT
11859]
Length = 437
Score = 258 bits (658), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 236/403 (58%), Gaps = 13/403 (3%)
Query: 62 PVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIG 121
P + F+ K DG L+CE+V ++D+ P Y+YSK I ++Y++ LE ++
Sbjct: 6 PNDREFAWK-DGTLWCENVPLKDLAARF-GTPLYVYSKQAIVNAFQSYQKPLEPYKHLMC 63
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
+A+KAN+N I+ L KLG G +VS ELR AG D +K IF+G K ++ A
Sbjct: 64 FAVKANSNLSIIRLLGKLGAGFDIVSEGELRRIQAAGCDTSKVIFSGVAKTYHEIEAALD 123
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-N 239
+ N++S +L+ ++ ++ GKK V R+NPDVD + HPY++TG K +KFGI +
Sbjct: 124 ADIKCFNIESPAELDRVIAVAQKKGKKARVSFRVNPDVDAKTHPYISTGLKKNKFGIAYD 183
Query: 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
+ ++ +L A ++ EL++VG CH+GS IT F DA + +DK+R G ++ ++
Sbjct: 184 QAVELYLKASRSP--ELEVVGIDCHIGSQITDTAPFVDACEKLCTLLDKLRLNGIDLQHI 241
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHV 356
+ GGGLGI Y + +P P L+ +R +++ R + +I E GRSL+ N+ L+ V
Sbjct: 242 DFGGGLGIQY--SNEAVPSPTVLVAALRRVLVKRGYGDKEMIFEAGRSLVGNSGALLMTV 299
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
+K KNF ++D M ++IRP+LY A+ I V+P ++ E + VVGPVCE+ D+
Sbjct: 300 QYMKQGELKNFCIVDCGMNDMIRPTLYQAWMQIVPVTPKKEEKETYCY-VVGPVCETGDW 358
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LGK+R L + G + + AGAY MSMAS YN + P E V
Sbjct: 359 LGKDRLLNVQE-GDLMALLSAGAYGMSMASNYNSRCLPAEVLV 400
>gi|254230109|ref|ZP_04923505.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|262392884|ref|YP_003284738.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|151937354|gb|EDN56216.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|262336478|gb|ACY50273.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
Length = 417
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVPLQALAEQY-GTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDPKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T +D F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRTGEAQTYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 357 VLQEGDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|118591377|ref|ZP_01548775.1| diaminopimelate decarboxylase [Stappia aggregata IAM 12614]
gi|118436049|gb|EAV42692.1| diaminopimelate decarboxylase [Stappia aggregata IAM 12614]
Length = 424
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 225/406 (55%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K +G L+ EDV ++ + V PFY YS +TR+ + + A + S++ YA+
Sbjct: 2 HHFDYK-NGELFAEDVPIETIAREV-GTPFYCYSTATLTRHYQVFAAAFSDIPSLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +LG G +VS ELR A AG +K +F+G GK + A QE +
Sbjct: 60 KANSNQAVLKTLAQLGAGMDVVSEGELRRARAAGVPASKIVFSGVGKTEAEQAYALQEDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + GK V +RINPDVD + H +ATG +KFGI ++ +
Sbjct: 120 LCFNVESEPELRQLSRVASEMGKTARVSMRINPDVDAKTHAKIATGKAENKFGIPWQRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P +K+ G H+GS IT+++ F +A + + I +R+QG +D++++GG
Sbjct: 180 DVYAEAAALPG-IKVTGIDMHIGSQITELEPFDNAFARLGDLIADLRSQGHTIDHVDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P V++ V + ++ EPGR + N LV V VK
Sbjct: 239 GLGIPYITDNNPPPHPDAYAQVVKKHVRELDCMVMFEPGRMIAGNAGILVTEVIYVKDGA 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D +M +LIRP+LY+AY + V ++ + K D+VGPVCE+ DFL + R++
Sbjct: 299 DKKFVIVDAAMNDLIRPTLYEAYHEVRPVREPAEETDRIKADIVGPVCETGDFLAQNRDM 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P+ G L V+ AGAY + TYN ++ PE V + +I P
Sbjct: 359 PSVKAGEMLAVYSAGAYGAVQSCTYNTRLLVPEVLVNADQFAVIRP 404
>gi|421562005|ref|ZP_16007842.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2657]
gi|421566323|ref|ZP_16012075.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3081]
gi|433537074|ref|ZP_20493576.1| diaminopimelate decarboxylase [Neisseria meningitidis 77221]
gi|254670860|emb|CBA07331.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha153]
gi|402336390|gb|EJU71651.1| diaminopimelate decarboxylase [Neisseria meningitidis NM2657]
gi|402340675|gb|EJU75873.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3081]
gi|432272835|gb|ELL27940.1| diaminopimelate decarboxylase [Neisseria meningitidis 77221]
Length = 406
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 226/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELVRVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
++ I + GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAERLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ-Q 180
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 181 PN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDTLVAEGIVLEHLDLGGGVGIVYQDE 239
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 240 S--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVDA 297
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDAY HIE V ++ ++VGP+CE+ DFLGK+R + + G L
Sbjct: 298 AMNDLMRPALYDAYHHIEAVE--TKNIATLTANIVGPICETGDFLGKDRTIAC-EEGDLL 354
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
++ AGAY SMAS YN + R E V
Sbjct: 355 LIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|410624509|ref|ZP_11335306.1| diaminopimelate decarboxylase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410156016|dbj|GAC30680.1| diaminopimelate decarboxylase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 416
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 158/399 (39%), Positives = 231/399 (57%), Gaps = 16/399 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D+ P Y+YS+ I R+ A+ A+ + +I YA+KAN+N +L
Sbjct: 11 LFAEDVPVADIARA-HGTPLYIYSRATIERHWHAFNNAVSKHDHLICYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L KLG G +VS EL + AG D TK +F+G GK +++ A Q+ + NV+S+ +
Sbjct: 70 VLAKLGSGFDIVSKGELSRVIEAGGDTTKVVFSGVGKTSDEIRFALQQNIMCFNVESDAE 129
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAV 249
L+ I + +AG+ K + +RINPDVD + HPY++TG K +KFGI R++ L+ + A
Sbjct: 130 LDRI---NNVAGQLDVKAPISIRINPDVDAKTHPYISTGLKANKFGIARDDALRVYKRA- 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A PN L++ G CH+GS +T + F DA ++ ID++ + +L++GGGLG+ Y
Sbjct: 186 SAMPN-LEVKGMDCHIGSQLTDITPFVDALERLLVLIDELAEHNIMISHLDVGGGLGVPY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
P P + + R +L LI+EPGR++ AN LV V +K KNF
Sbjct: 245 --NDETPPHPDEYAAAMSAKMQGREHLKLILEPGRAIAANAGILVTEVEYLKQGEEKNFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L+RP+LY A+Q I V P D K+DVVGPVCE+ DFLGK+R+L
Sbjct: 303 IVDAAMNDLLRPALYSAWQAIIPVQPR-LDIAAQKYDVVGPVCETGDFLGKDRDLAIAP- 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L V AGAY MAS YN + RP E V +II+
Sbjct: 361 GDFLAVRSAGAYGFVMASNYNSRCRPAEIMVDKTQTIIV 399
>gi|410640921|ref|ZP_11351447.1| diaminopimelate decarboxylase [Glaciecola chathamensis S18K6]
gi|410139486|dbj|GAC09634.1| diaminopimelate decarboxylase [Glaciecola chathamensis S18K6]
Length = 415
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 224/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY EDV + D+ +T P Y+YSK I R+ A+ +A ++ YA+KAN+N +L
Sbjct: 11 LYAEDVSLHDIAQT-HGTPCYVYSKATIERHWLAFDKAAGAHPHLVCYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L KLG G +VSG EL ++AG DP+K +F+G GK E++ L + + NV+S +
Sbjct: 70 VLAKLGSGFDIVSGGELLRVIKAGGDPSKVVFSGVGKTPEEIALGLKHNIKCFNVESPAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + K + +R+NPDVD + HPY++TG K +KFGI E+ + P
Sbjct: 130 LERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYRHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T++ F DA ++ ID++ G + +L++GGGLG+ Y
Sbjct: 190 N-LEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVGGGLGVTY--KD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + R +L LI EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 ETPPHPDEYTQAIAQRMQGREDLQLIFEPGRAIMANAGVLLTKVEFLKQGAEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q I P D +++ +DVVGP+CE+ DF+GKEREL +
Sbjct: 307 AMNDLIRPALYSAWQSI-----IPLDTSLTRESAVYDVVGPICETGDFIGKERELAI-EA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + + E V
Sbjct: 361 GDYLAVRSAGAYGFVMASNYNSRCKAAEIMV 391
>gi|91227530|ref|ZP_01261867.1| diaminopimelate decarboxylase [Vibrio alginolyticus 12G01]
gi|91188554|gb|EAS74846.1| diaminopimelate decarboxylase [Vibrio alginolyticus 12G01]
Length = 417
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVPLQALAEQY-GTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVIAAGGDPKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T +D F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRKGEAQTYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 357 VLQEGDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|332304598|ref|YP_004432449.1| diaminopimelate decarboxylase [Glaciecola sp. 4H-3-7+YE-5]
gi|410645570|ref|ZP_11356032.1| diaminopimelate decarboxylase [Glaciecola agarilytica NO2]
gi|332171927|gb|AEE21181.1| diaminopimelate decarboxylase [Glaciecola sp. 4H-3-7+YE-5]
gi|410134901|dbj|GAC04431.1| diaminopimelate decarboxylase [Glaciecola agarilytica NO2]
Length = 415
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 224/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY EDV + D+ +T P Y+YSK I R+ A+ +A ++ YA+KAN+N +L
Sbjct: 11 LYAEDVSLHDIAQT-HGTPCYVYSKATIERHWLAFDKAAGAHPHLVCYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L KLG G +VSG EL ++AG DP+K +F+G GK E++ L + + NV+S +
Sbjct: 70 VLAKLGSGFDIVSGGELLRVIKAGGDPSKVVFSGVGKTPEEIALGLKHNIKCFNVESPAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + K + +R+NPDVD + HPY++TG K +KFGI E+ + P
Sbjct: 130 LERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYRHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T++ F DA ++ ID++ G + +L++GGGLG+ Y
Sbjct: 190 N-LEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVGGGLGVTY--KD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + R +L LI EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 ETPPHPDEYTQAIAQRMQGREDLQLIFEPGRAIMANAGVLLTKVEFLKQGAEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q I P D +++ +DVVGP+CE+ DF+GKEREL +
Sbjct: 307 AMNDLIRPALYSAWQSI-----IPLDTSLTRDSAVYDVVGPICETGDFIGKERELAI-EA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + + E V
Sbjct: 361 GDYLAVRSAGAYGFVMASNYNSRCKAAEIMV 391
>gi|381393363|ref|ZP_09919086.1| diaminopimelate decarboxylase [Glaciecola punicea DSM 14233 = ACAM
611]
gi|379330921|dbj|GAB54219.1| diaminopimelate decarboxylase [Glaciecola punicea DSM 14233 = ACAM
611]
Length = 416
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 224/395 (56%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L+ E+V V D++ P Y+YS+ + R+ A+ A+ +I YA+KA
Sbjct: 3 FFTYKDNLLFAEEVAVDDIIAE-HGTPAYIYSRATLERHWHAFNNAVSAHKHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L KLG G +VSG EL + AG DP K +F+G K ++ A ++G+
Sbjct: 62 NSNIGVLSVLAKLGSGFDIVSGGELARVIEAGGDPAKVVFSGVAKTQGEIAYALEQGIKC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L+ I ++ GKK + LRINPDVD + HPY++TG K +KFGI E
Sbjct: 122 FNVESFPELDRINTVAKEMGKKAPISLRINPDVDAKTHPYISTGLKANKFGISREYAIGA 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS IT++ F D ++ ID++ A+G + +L++GGGL
Sbjct: 182 YEYANTLSN-LDIQGMDCHIGSQITELSPFVDTLERLLALIDQLAAKGIHIAHLDVGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y P P + ++ R +L LI+EPGR++ AN LV V +K
Sbjct: 241 GVRYNEESP--PHPNEYAAAMATTMVGREDLMLILEPGRAIAANAGILVTKVEFLKQGEE 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +LIRP+LY+A+Q IE + ++ K+DVVGPVCE+ DFLGK+R L
Sbjct: 299 KNFAIVDAAMNDLIRPALYNAWQKIEPTN--VREGAGKKYDVVGPVCETGDFLGKDRVLN 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY MAS YN + R PE V
Sbjct: 357 I-EPNDNLAVKSAGAYGFVMASNYNSRCRCPEIMV 390
>gi|418289126|ref|ZP_12901509.1| diaminopimelate decarboxylase [Neisseria meningitidis NM233]
gi|372200278|gb|EHP14380.1| diaminopimelate decarboxylase [Neisseria meningitidis NM233]
Length = 406
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 153/388 (39%), Positives = 229/388 (59%), Gaps = 12/388 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDTLVAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ES--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDAY HIE V ++ ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVE--TKNIATLTANIVGPICETGDFLGKDRTIAC-EEGDL 353
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 354 LLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|39995269|ref|NP_951220.1| diaminopimelate decarboxylase [Geobacter sulfurreducens PCA]
gi|409910716|ref|YP_006889181.1| diaminopimelate decarboxylase [Geobacter sulfurreducens KN400]
gi|39982031|gb|AAR33493.1| diaminopimelate decarboxylase [Geobacter sulfurreducens PCA]
gi|298504274|gb|ADI82997.1| diaminopimelate decarboxylase [Geobacter sulfurreducens KN400]
Length = 417
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 226/391 (57%), Gaps = 13/391 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V +++++ V P Y+YS +TR+ A+ +A G+ I Y++KAN+ +L
Sbjct: 11 LHAEEVSLKEIVARV-GSPVYVYSHATLTRHFTAFDEAFAGVPHTICYSVKANSTQAVLR 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
LG GA +VSG EL AL+AG DP K +++G GK +++ A G+ + NV+SE +
Sbjct: 70 TFITLGGGADIVSGGELYRALQAGVDPKKVVYSGVGKKDDEIEYALNTGILMFNVESEQE 129
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
L I +ASR+ GKK + +R+NPDVDPQ HPY+ TG KN+KFGI ++ K
Sbjct: 130 LTRISEIASRM-GKKAGIAIRVNPDVDPQTHPYITTGLKNAKFGITIDRAMAEYARAKTL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P + ++G H+GS +TKV F D+ + I +R QG ++ Y + GGGLGI Y
Sbjct: 189 PG-IDVIGIDMHIGSQLTKVTPFVDSIEKLKTMIANLRGQGIDLQYFDCGGGLGIQYSTE 247
Query: 313 GAVLPKP--RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
LP + ++ +EL ++L+ EPGR+++ N LV K KNFI+I
Sbjct: 248 EPPLPADYGKEIVAATKEL----GMHLLFEPGRNIVGNAGILVATCLFTKERDEKNFIMI 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +L RP+LY ++ ++ V QD I D+VGP+CES DFL K+RE+P +G
Sbjct: 304 DAGMNDLARPALYGSFHGVQPVV-KDQDGMIVA-DIVGPICESGDFLVKDREVPMFRQGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY +M+STYN + R E V+
Sbjct: 362 LMAFMSAGAYGFAMSSTYNSRPRVAEVMVKG 392
>gi|163803627|ref|ZP_02197492.1| diaminopimelate decarboxylase [Vibrio sp. AND4]
gi|159172575|gb|EDP57435.1| diaminopimelate decarboxylase [Vibrio sp. AND4]
Length = 417
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 232/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q V+ P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQ-VLAKQYGTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG ++ +L++GGGL
Sbjct: 183 YQFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLTLIDGLKAQGIDIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVVPREGETQNYDLVGPICETGDFLGKDRALA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|332139612|ref|YP_004425350.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Deep ecotype']
gi|410859854|ref|YP_006975088.1| diaminopimelate decarboxylase [Alteromonas macleodii AltDE1]
gi|327549634|gb|AEA96352.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Deep ecotype']
gi|410817116|gb|AFV83733.1| putative diaminopimelate decarboxylase [Alteromonas macleodii
AltDE1]
Length = 416
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/399 (37%), Positives = 230/399 (57%), Gaps = 8/399 (2%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+ G L+ E+V V D+ P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 7 SQGQLHAEEVAVSDIAAQ-HGTPVYIYSRATLERHWHAFNDAIGEHPHLVCYAVKANSNI 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG G +VS EL + AG D +K +F+G GK +++ A ++G+ NV+
Sbjct: 66 GVLSVLAKLGSGFDIVSAGELARVIEAGGDASKVVFSGVGKKHDEIRYALEQGIMCFNVE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE +L I + G K + LRINPDVD + HPY++TG K +KFGI E+ +
Sbjct: 126 SEPELHRINEVAGEVGVKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYELA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ PN L +VG CH+GS +T++ F DA ++ ID++ + +++L++GGGLG+ Y
Sbjct: 186 ASLPN-LNVVGMDCHIGSQLTEIGPFVDALERLLVLIDELAERNIIIEHLDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
P P+ + E ++ R NL LI+EPGR++ AN LV V +K K+F
Sbjct: 245 NDEEP--PHPKAYAQAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEEKSFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L+RP+LY A+Q I V A++ +DVVGPVCE+ DF+GK+REL
Sbjct: 303 IVDAAMNDLLRPALYSAWQKIIPVKE-ESTAKLHTYDVVGPVCETGDFIGKDRELAIEPT 361
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY MAS YN + RP E V +I++
Sbjct: 362 DL-LAVRSAGAYGFVMASNYNSRCRPAEIMVDGDKAIVV 399
>gi|385852058|ref|YP_005898573.1| diaminopimelate decarboxylase [Neisseria meningitidis M04-240196]
gi|433470117|ref|ZP_20427523.1| diaminopimelate decarboxylase [Neisseria meningitidis 98080]
gi|325206881|gb|ADZ02334.1| diaminopimelate decarboxylase [Neisseria meningitidis M04-240196]
gi|432201084|gb|ELK57170.1| diaminopimelate decarboxylase [Neisseria meningitidis 98080]
Length = 406
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/390 (40%), Positives = 230/390 (58%), Gaps = 16/390 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELVRVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LRINPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYKD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ES--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKF--DVVGPVCESADFLGKERELPTPDRG 429
+M +L+RP+LYDAY HIE V + IS ++VGP+CE+ DFLGK+R + + G
Sbjct: 297 AAMNDLMRPALYDAYHHIEAV----ETKNISPLTANIVGPICETGDFLGKDRTIAC-EEG 351
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L++ AGAY SMAS YN + R E V
Sbjct: 352 DLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>gi|429744855|ref|ZP_19278315.1| diaminopimelate decarboxylase [Neisseria sp. oral taxon 020 str.
F0370]
gi|429161949|gb|EKY04313.1| diaminopimelate decarboxylase [Neisseria sp. oral taxon 020 str.
F0370]
Length = 410
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 154/389 (39%), Positives = 220/389 (56%), Gaps = 14/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L CE++ ++ E P Y+YS+ + + AY+ A LN +I YA+KAN N ++
Sbjct: 3 LRCENLSYTELAERY-GTPLYVYSQAALDQAYAAYQTAFAALNPLICYAVKANGNLAVIR 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+LG G +VSG EL L AG K IF+G GK ++ A + G+ NV+S +
Sbjct: 62 RFAELGSGFDIVSGGELARVLAAGGSAAKTIFSGVGKSEAEIEFALKAGIKCFNVESLPE 121
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
LE I + +AG+ + V LRINPDVD Q HPY++TG K +KFGI +
Sbjct: 122 LERI---NDVAGRLNLRAPVSLRINPDVDAQTHPYISTGLKENKFGIAMRDAEAAYRRAA 178
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L++VG CH+GS + K+D +A +++ D++ AQG + ++++GGG+GI Y
Sbjct: 179 ELPH-LRVVGIDCHIGSQLIKLDPLVEACERILSLADRLAAQGIALQHIDLGGGVGIVYR 237
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P VREL+ SR L LI+EPGRSL+ N L+ V VK N KNF++
Sbjct: 238 DEDT--PDLAAYAAAVRELIGSRTLGLILEPGRSLVGNAGVLLTRVEYVKHNENKNFVIT 295
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY AY HIE + P A + D+VGP+CE+ DFL K+R +
Sbjct: 296 DAAMNDLMRPALYQAYHHIE-PAETPSAAPFAA-DIVGPICETGDFLAKDRSIAAQADDL 353
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVVH AGAY SMA YN + R E V
Sbjct: 354 -LVVHSAGAYASSMAGNYNTRPRAAEVLV 381
>gi|424897240|ref|ZP_18320814.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393181467|gb|EJC81506.1| diaminopimelate decarboxylase [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 422
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 222/391 (56%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V ++ + V PFY+YS + R+ + +A ++S++ YA+KAN+N
Sbjct: 8 DGILHAENVPVPEIAKAV-GTPFYVYSTATLERHYRVFSEAFADVDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR AL A ++ +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AG K V RINPDVD + H ++TG K +KFGI E+ +
Sbjct: 127 EPELEILNQRAIKAGTKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERARAIYANAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT++ F DA L+ + + +RA G + +++IGGGLG+ Y
Sbjct: 187 KMPG-IEVTGIDMHIGSQITELQPFDDAFKLLSDLVATLRADGHTIHHVDIGGGLGVPYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + N +I EPGR ++ N LV V VK G K F+++
Sbjct: 246 DDNNPPPLPDAYAAIVKNQLRGLNCKIITEPGRLIVGNAGILVTEVLYVKDGGEKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V+ + +A + DVVGPVCE+ D+L +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMAMPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ V AGAY A TYN ++ PE V+
Sbjct: 366 LMAVSTAGAYGAVQAGTYNSRLLVPEVLVKG 396
>gi|451972062|ref|ZP_21925275.1| diaminopimelate decarboxylase [Vibrio alginolyticus E0666]
gi|451932076|gb|EMD79757.1| diaminopimelate decarboxylase [Vibrio alginolyticus E0666]
Length = 417
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVPLQALAEQY-GTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDPKKVVFSGVGKTPVEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T +D F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRTGEAQTYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 357 VLQEGDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|333907105|ref|YP_004480691.1| diaminopimelate decarboxylase [Marinomonas posidonica IVIA-Po-181]
gi|333477111|gb|AEF53772.1| diaminopimelate decarboxylase [Marinomonas posidonica IVIA-Po-181]
Length = 417
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/394 (39%), Positives = 223/394 (56%), Gaps = 6/394 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + DV E P Y+YS+ R+ Y +A ++I YA+KA +N IL
Sbjct: 11 LHAEGVALSDVAEQF-GTPCYIYSRAMFERHYMDYAEAFAAHPTLICYAVKACSNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL L+AG +P+K +F+G GK ++ A + G+ NV+SE +
Sbjct: 70 VLARLGAGFDIVSLGELERVLKAGGEPSKVMFSGLGKQEVEMRRALEVGIHCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L + + GKK V LR+NPDVD + HPY++TG K +KFGI ++ P
Sbjct: 130 LYRLDKVASEMGKKAPVSLRVNPDVDAKTHPYISTGLKENKFGIDIKEAVRIYQIANELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L ++G CH+GS +T++ F D +V +D++ A G ++ +L++GGGLG+ Y
Sbjct: 190 N-LDVMGVDCHIGSQLTELQPFLDTFDRLVGLLDELAAVGIKIKHLDLGGGLGVRYRDE- 247
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
V PKP + + E V ++ L EPGRS+ AN ++ V +K N KNF +IDG+
Sbjct: 248 -VPPKPADYAKLLLEKVKGMDVTLAFEPGRSIAANAGVMLTQVEFLKCNDHKNFAIIDGA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPSLY A+ I VS P +D+VGPVCE+ DFLGK+REL G L
Sbjct: 307 MNDLIRPSLYSAWMDIVPVSQQPTSEGKRVYDLVGPVCETGDFLGKDRELDI-QAGDLLA 365
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
V AGAY +MAS YN + R E V + +I
Sbjct: 366 VRSAGAYGFTMASNYNSRNRAAEVMVDGDTAYLI 399
>gi|385337297|ref|YP_005891170.1| diaminopimelate decarboxylase [Neisseria meningitidis WUE 2594]
gi|433476402|ref|ZP_20433734.1| diaminopimelate decarboxylase [Neisseria meningitidis 88050]
gi|433480489|ref|ZP_20437770.1| diaminopimelate decarboxylase [Neisseria meningitidis 63041]
gi|433514292|ref|ZP_20471075.1| diaminopimelate decarboxylase [Neisseria meningitidis 63049]
gi|433516448|ref|ZP_20473209.1| diaminopimelate decarboxylase [Neisseria meningitidis 2004090]
gi|433518491|ref|ZP_20475229.1| diaminopimelate decarboxylase [Neisseria meningitidis 96023]
gi|433520658|ref|ZP_20477368.1| diaminopimelate decarboxylase [Neisseria meningitidis 65014]
gi|433523714|ref|ZP_20480379.1| diaminopimelate decarboxylase [Neisseria meningitidis 97020]
gi|433529075|ref|ZP_20485681.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3652]
gi|433531249|ref|ZP_20487827.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3642]
gi|433533322|ref|ZP_20489879.1| diaminopimelate decarboxylase [Neisseria meningitidis 2007056]
gi|433535413|ref|ZP_20491940.1| diaminopimelate decarboxylase [Neisseria meningitidis 2001212]
gi|433541845|ref|ZP_20498285.1| diaminopimelate decarboxylase [Neisseria meningitidis 63006]
gi|319409711|emb|CBY90016.1| diaminopimelate decarboxylase (DAP decarboxylase) [Neisseria
meningitidis WUE 2594]
gi|432207847|gb|ELK63834.1| diaminopimelate decarboxylase [Neisseria meningitidis 88050]
gi|432213766|gb|ELK69676.1| diaminopimelate decarboxylase [Neisseria meningitidis 63041]
gi|432245780|gb|ELL01245.1| diaminopimelate decarboxylase [Neisseria meningitidis 63049]
gi|432251004|gb|ELL06377.1| diaminopimelate decarboxylase [Neisseria meningitidis 2004090]
gi|432251498|gb|ELL06864.1| diaminopimelate decarboxylase [Neisseria meningitidis 96023]
gi|432251849|gb|ELL07211.1| diaminopimelate decarboxylase [Neisseria meningitidis 65014]
gi|432260613|gb|ELL15871.1| diaminopimelate decarboxylase [Neisseria meningitidis 97020]
gi|432263699|gb|ELL18912.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3652]
gi|432264126|gb|ELL19334.1| diaminopimelate decarboxylase [Neisseria meningitidis NM3642]
gi|432264767|gb|ELL19965.1| diaminopimelate decarboxylase [Neisseria meningitidis 2007056]
gi|432269414|gb|ELL24573.1| diaminopimelate decarboxylase [Neisseria meningitidis 2001212]
gi|432275399|gb|ELL30472.1| diaminopimelate decarboxylase [Neisseria meningitidis 63006]
Length = 414
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 156/391 (39%), Positives = 230/391 (58%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFENYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLIEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 EN--VPDLGAYARAVQKLMGTRRLKLILEPGRSLVGNAGALLTRVEFVKHGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVETKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGSSMASNYNTRNRAAEVLV 381
>gi|429210758|ref|ZP_19201924.1| diaminopimelate decarboxylase [Pseudomonas sp. M1]
gi|428158172|gb|EKX04719.1| diaminopimelate decarboxylase [Pseudomonas sp. M1]
Length = 415
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I + +Y AL+GL ++ +A+KAN+N
Sbjct: 8 DGQLFAEGVALSALAERFGT-PTYVYSRAHIEQQFRSYTDALQGLPHLVCFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG DP K +F+G GK +D+ A Q GV NV+S
Sbjct: 67 VLNVLARLGSGFDIVSRGELERVLAAGGDPAKVVFSGVGKSRDDMRRALQVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 127 AVELERLQEVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIDIDEAEAIYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++ G CH+GS +T+++ F DA ++ +D++ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LEVKGVDCHIGSQLTQLEPFLDALDRLLALVDRLAARGILIRHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE + SR L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DE--TPPPASDYIRAIRERLGSRQLTLVFEPGRYIVANAGLLLTRVEYLKHTAHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ +E+ + + +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAW--MEVTPVIARAGQKRTYDLVGPICETGDFLAKGRELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY M+S YN + R E V
Sbjct: 361 LLAIRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|398810797|ref|ZP_10569607.1| diaminopimelate decarboxylase [Variovorax sp. CF313]
gi|398082014|gb|EJL72777.1| diaminopimelate decarboxylase [Variovorax sp. CF313]
Length = 428
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 231/405 (57%), Gaps = 21/405 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ + P ++YSK + + AY++ EG +++I YA+KAN++
Sbjct: 20 DGALHVEGVALE-ALAREHGTPLFVYSKQWMLDALAAYQRGFEGRDALICYAMKANSSLG 78
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L + GCG +VSG EL L G DP K IF+G GK ++ A G+ NV+S
Sbjct: 79 VLRVFAQAGCGFDIVSGGELARVLAVGADPKKIIFSGVGKTRAEMREALAAGIACFNVES 138
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + GK+ + +RINP+VDP+ HPY++TG K +KFGI +++ AV+
Sbjct: 139 EAELDVLNEVALAEGKRAPISIRINPNVDPKTHPYISTGLKGNKFGIAHDR------AVE 192
Query: 251 AHPNE-----LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ + L++VG CH+GS IT+ + DA +++ ++ I A G + +L+ GGGL
Sbjct: 193 AYRHAARLPGLEVVGIDCHIGSQITEASPYLDACDRVLDLVEAIEAAGVPIHHLDFGGGL 252
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTN 362
GIDY G V PK L + + +RN L+IEPGRSL+ N V V K
Sbjct: 253 GIDY--NGEVPPKADALWRQLLAKLDARNFGQRKLVIEPGRSLVGNAGVCVTEVLYTKPG 310
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF ++D +M +L RP++Y A+Q I + DA +DVVGPVCES D++G++R
Sbjct: 311 EDKNFCIVDAAMNDLPRPAMYQAFQRIVPLRSRAGDA--PTYDVVGPVCESGDWIGRDRA 368
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L G L V AGAYCMSMAS YN + R E V + +I
Sbjct: 369 LNVV-AGDLLAVLSAGAYCMSMASNYNTRGRAAEVLVSGATAKLI 412
>gi|303256483|ref|ZP_07342497.1| diaminopimelate decarboxylase [Burkholderiales bacterium 1_1_47]
gi|302859974|gb|EFL83051.1| diaminopimelate decarboxylase [Burkholderiales bacterium 1_1_47]
Length = 437
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/411 (36%), Positives = 238/411 (57%), Gaps = 13/411 (3%)
Query: 62 PVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIG 121
P + F+ K DG L+CE+V ++D+ P Y+YSK I ++Y++ LE ++
Sbjct: 6 PNDREFAWK-DGTLWCENVPLKDLAARF-GTPLYVYSKQAIVNAFQSYQKPLEPYKHLMC 63
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
+A+KAN+N I+ L KLG G +VS ELR AG D +K IF+G K ++ A
Sbjct: 64 FAVKANSNLSIIRLLGKLGAGFDIVSEGELRRIQAAGCDTSKVIFSGVAKTYHEIEAALD 123
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-N 239
+ N++S +L+ ++ ++ GKK V R+NPDVD + HPY++TG K +KFGI +
Sbjct: 124 ADIKCFNIESPAELDRVIAVAQKKGKKARVSFRVNPDVDAKTHPYISTGLKKNKFGIAYD 183
Query: 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
+ ++ +L A ++ EL++VG CH+GS IT F DA + +DK+R G ++ ++
Sbjct: 184 QAVELYLKASRSP--ELEVVGIDCHIGSQITDTAPFVDACEKLCTLLDKLRLNGIDLQHI 241
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHV 356
+ GGGLGI Y + +P P L+ +R ++ R + +I E GRSL+ N+ L+ V
Sbjct: 242 DFGGGLGIQY--SNEAVPSPTVLVAALRRALVKRGYGDKEMIFEAGRSLVGNSGALLMTV 299
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
+K KNF ++D M ++IRP+LY A+ I V+P + E + VVGPVCE+ D+
Sbjct: 300 QYMKQGELKNFCIVDCGMNDMIRPTLYQAWMQIVPVTPKKEGKETYCY-VVGPVCETGDW 358
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
LGK+R L + G + + AGAY MSMAS YN + P E V +++I
Sbjct: 359 LGKDRLLNVQE-GDLMALLSAGAYGMSMASNYNSRCLPAEVLVDGNKAVLI 408
>gi|424044456|ref|ZP_17782079.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-03]
gi|408888037|gb|EKM26501.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-03]
Length = 417
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V AP++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVAPREGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|269961537|ref|ZP_06175900.1| diaminopimelate decarboxylase [Vibrio harveyi 1DA3]
gi|269833766|gb|EEZ87862.1| diaminopimelate decarboxylase [Vibrio harveyi 1DA3]
Length = 417
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V AP++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVAPREGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|393760678|ref|ZP_10349485.1| diaminopimelate decarboxylase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161176|gb|EJC61243.1| diaminopimelate decarboxylase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 422
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 219/371 (59%), Gaps = 8/371 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + E+Y+ A + ++ Y +KAN+N IL+ +LG G +VSG EL
Sbjct: 31 PLYVYSRQALRDAWESYRVAGQDRKLLVCYGMKANSNLAILQEFARLGTGFDIVSGGELA 90
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
+ AG DP K +F+G GK + ++ A + GV NV+SE +LE + + K V
Sbjct: 91 RVIAAGGDPGKVVFSGVGKQVWEIEAALKAGVKCFNVESEAELERVAQVAERMNVKAPVS 150
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K++KFG+ ++ +A P+ L +VG CH+GS IT+
Sbjct: 151 LRVNPDVDARTHPYISTGLKDNKFGVPIDQAPRIYARAQALPS-LNIVGVDCHIGSQITE 209
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
V + DA ++ I ++ QG + +L++GGGLGI Y T L P L+ V +
Sbjct: 210 VSPYLDALDKLIKLILALKEQGVNLTHLDLGGGLGIRY--TDETLVTPTQLLTEVFSALD 267
Query: 332 SR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ +L +++EPGRS++ N L++ V +K TKNF +ID +M +LIRP+LYDA+
Sbjct: 268 TNGLGHLEIVLEPGRSMVGNAGVLLSRVEYLKHGETKNFAIIDAAMNDLIRPTLYDAWHS 327
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
+E V P P ++D+VGP+CES D+L ++R+L +G + + AGAY +MAS Y
Sbjct: 328 VEAVEPRPVTETTPRYDLVGPICESGDWLARDRQLEL-KQGDLIAIMSAGAYAFTMASQY 386
Query: 449 NLKMRPPEYWV 459
N + R E V
Sbjct: 387 NTRPRAAEILV 397
>gi|323500161|ref|ZP_08105106.1| diaminopimelate decarboxylase [Vibrio sinaloensis DSM 21326]
gi|323314790|gb|EGA67856.1| diaminopimelate decarboxylase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 233/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + D+ + P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVALSDLAQQY-GTPLYVYSRATLERHWNAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK +++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTEQEMQRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGQLGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID ++AQG ++++L++GGGL
Sbjct: 183 YQFASSLEN-LDIKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGIQIEHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLANHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VSP DA++ +D+VGP+CE+ DFLGK+REL
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVSPRQGDAKV--YDLVGPICETGDFLGKDRELV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN + R E V
Sbjct: 358 IEENDL-LAVRSAGAYGFVMSSNYNTRTRVAEVMV 391
>gi|410632503|ref|ZP_11343161.1| diaminopimelate decarboxylase [Glaciecola arctica BSs20135]
gi|410147929|dbj|GAC20028.1| diaminopimelate decarboxylase [Glaciecola arctica BSs20135]
Length = 416
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 228/391 (58%), Gaps = 10/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ EDV ++ V P Y+YSK I R+ A+ +A +I YA+KAN+N
Sbjct: 8 DQQLFAEDVSLEAVARKY-GTPCYVYSKATIERHWHAFDRAAGSQPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L + KLG G +VSG EL L+AG DP+K +F+G GK +++ LA + + NV+S
Sbjct: 67 VLNVMAKLGSGFDIVSGGELTRVLKAGGDPSKVVFSGVGKTQDEIALALKHNIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I + AGKK + +R+NPDVD + HPY++TG K++KFG+ ++
Sbjct: 127 RSELARINEVAEQAGKKAPISIRVNPDVDAKTHPYISTGLKDNKFGVERQQAVEIYQYAN 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG CH+GS +T + F DA +++ ID++ Q + +L++GGGLG+ Y
Sbjct: 187 SLPF-LNVVGIDCHIGSQLTDLTPFVDALDILLALIDELAQQNIHIKHLDVGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + E + R +L LI EPGR+++AN L+ V +K KNF +
Sbjct: 246 DEKP--PHPDQYTQAIAERLEGREDLLLIFEPGRAIMANAGVLLTKVEFLKQGAEKNFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDR 428
+D +M +LIRP+LY A+Q+I ++ A + + + +D+VGP+CE+ DFLGK REL PD
Sbjct: 304 VDAAMNDLIRPALYSAWQNIIPLNAALERPK-AVYDIVGPICETGDFLGKGRELTIAPDD 362
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +MAS YN + R E +
Sbjct: 363 --YLAVRSAGAYGFAMASNYNSRCRAAEVLI 391
>gi|410417882|ref|YP_006898331.1| diaminopimelate decarboxylase [Bordetella bronchiseptica MO149]
gi|427823108|ref|ZP_18990170.1| diaminopimelate decarboxylase [Bordetella bronchiseptica Bbr77]
gi|408445177|emb|CCJ56825.1| diaminopimelate decarboxylase [Bordetella bronchiseptica MO149]
gi|410588373|emb|CCN03430.1| diaminopimelate decarboxylase [Bordetella bronchiseptica Bbr77]
Length = 429
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + D + P Y+YS+ + E Y+ A+ ++ + +KAN+N
Sbjct: 20 NGVLHAEDVPL-DSLAAQLGTPLYVYSRAALRSAWETYRDAIGERPVLVCFGMKANSNLA 78
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ +LG G +VSG EL L G DP K +F+G GK ++ A + V NV+S
Sbjct: 79 VLKEFARLGAGFDIVSGGELARVLAVGGDPAKVVFSGVGKQAWEMRAALEADVKCFNVES 138
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G++ V LR+NPDVD Q HPY++TG K +KFGI E
Sbjct: 139 EAELERLSEVAVSMGRRARVSLRVNPDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAA 198
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++VG CH+GS +T + + DA +++ I+++ G + +L++GGGLGI Y
Sbjct: 199 RLPG-VEVVGVDCHIGSQLTDISPYFDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRY- 256
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T + P P+ L+D V E + +R +L++++EPGRSL+ N L+ V +K +NF
Sbjct: 257 -TDEIPPSPKALLDRVFERINARGLGHLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNF 315
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY+AY ++ V+P D I ++DVVGPVCESAD+L + R L
Sbjct: 316 AIVDAAMNDLLRPALYEAYHGVQPVTPR-ADKRI-EYDVVGPVCESADWLARGRALAI-Q 372
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M MAS YN ++R E V
Sbjct: 373 AGDVLAVESAGAYSMVMASNYNTRVRAAEVMV 404
>gi|152997590|ref|YP_001342425.1| diaminopimelate decarboxylase [Marinomonas sp. MWYL1]
gi|150838514|gb|ABR72490.1| diaminopimelate decarboxylase [Marinomonas sp. MWYL1]
Length = 417
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 223/394 (56%), Gaps = 6/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F ++ L+ EDV + DV P Y+YS+ + R+ +AY A ++I YA+KA
Sbjct: 3 FFNYSNQTLHAEDVALSDVANQY-GTPCYVYSRATLERHYKAYADAFASHPTLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
+N IL L +LG G +VS EL L+AG +P+K +F+G GK E++ A + G+
Sbjct: 62 CSNIAILNVLARLGSGFDIVSVGELERVLKAGGEPSKVMFSGLGKQAEEMRRALEVGIHC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + GK V LR+NPDVD + HPY++TG K +KFGI +
Sbjct: 122 FNVESEAELYRLDKVAGEMGKLAPVSLRVNPDVDAKTHPYISTGLKENKFGIDIKDAVRI 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN L ++G CH+GS +T++ F D ++ +D++ G + +L++GGGL
Sbjct: 182 YKIAHELPN-LNVMGVDCHIGSQLTELKPFLDTFDRLIGLVDELAEVGITIKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y V P+P + + E V RN L EPGRS+ AN L+ V +K N K
Sbjct: 241 GVRYRDE--VPPEPADYAKLLLEKVKGRNFELAFEPGRSIAANAGILLTQVEFLKCNPHK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF +IDG+M +LIRPSLY A+ +I VS P +D+VGP+CE+ DFLGK+REL
Sbjct: 299 NFAIIDGAMNDLIRPSLYGAWMNIVPVSLLPTAEGKRNYDLVGPICETGDFLGKDRELDI 358
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +M+S YN + R E V
Sbjct: 359 -QAGDLLAVRSAGAYGFTMSSNYNSRNRAAEVMV 391
>gi|156972658|ref|YP_001443565.1| diaminopimelate decarboxylase [Vibrio harveyi ATCC BAA-1116]
gi|156524252|gb|ABU69338.1| hypothetical protein VIBHAR_00310 [Vibrio harveyi ATCC BAA-1116]
Length = 417
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGQYPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PREGEAHTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|70733296|ref|YP_263070.1| diaminopimelate decarboxylase [Pseudomonas protegens Pf-5]
gi|68347595|gb|AAY95201.1| diaminopimelate decarboxylase [Pseudomonas protegens Pf-5]
Length = 415
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 222/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +AY QAL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYQAYAQALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 AEELERLQLVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIATAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEIVGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGECGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYVKAVRERLDGRDLALVFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL KER L + G
Sbjct: 304 DGAMNDLIRPALYQAWMDVSAVR--PRDTEPRTYDIVGPICETGDFLAKERTLALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|410619825|ref|ZP_11330716.1| diaminopimelate decarboxylase [Glaciecola polaris LMG 21857]
gi|410160603|dbj|GAC34854.1| diaminopimelate decarboxylase [Glaciecola polaris LMG 21857]
Length = 415
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 153/391 (39%), Positives = 223/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E+V +QD+ +T P Y+YS+ I R+ A+ +A +I YA+KAN+N +L
Sbjct: 11 LYAEEVSLQDIAQT-HGTPCYVYSRATIERHWLAFDKAAGAHPHLICYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L KLG G +VSG EL L AG DPTK +F+G GK E++ L + + NV+S +
Sbjct: 70 VLAKLGSGFDIVSGGELLRVLAAGGDPTKIVFSGVGKTPEEIALGLKHNIKCFNVESPAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + K + +R+NPDVD + HPY++TG K +KFGI E+ + P
Sbjct: 130 LARISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYRHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L + G CH+GS +T++ F DA ++ ID++ A + +L++GGGLG+ Y
Sbjct: 190 N-LAIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAANDIILSHLDVGGGLGVTY--KD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + R +L LI EPGR+++AN L++ V +K KNF +ID
Sbjct: 247 ETPPHPDEYTQAITQRMEGRKDLQLIFEPGRAIMANAGVLLSKVEFLKQGAEKNFAIIDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q I P D +++ +DVVGP+CE+ DF+GKEREL +
Sbjct: 307 AMNDLIRPALYSAWQSI-----IPLDTSLTRDSAVYDVVGPICETGDFIGKERELAI-EA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY MAS YN + R E V
Sbjct: 361 GDYLAVRSAGAYGFVMASNYNSRCRAAEIMV 391
>gi|374334306|ref|YP_005090993.1| diaminopimelate decarboxylase [Oceanimonas sp. GK1]
gi|372983993|gb|AEY00243.1| diaminopimelate decarboxylase [Oceanimonas sp. GK1]
Length = 418
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG LY E + + E P Y+YS+ + R+ A+ +A ++ ++ YA+KA
Sbjct: 4 FNYQDDGRLYGEACDLSRLAEQY-GTPLYVYSRATLERHWHAFDRAAGEVDHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK +++ A ++G+F
Sbjct: 63 NSNLAVLNVLARLGSGFDIVSGGELSRVIAAGGDPKKVVFSGVGKRDDEIRFALEQGIFC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +LE I + G K V +R+NPD+D HPY++TG K +KFGI E+ +
Sbjct: 123 FNVESVAELERINRVAGSMGMKAPVSIRVNPDIDAGTHPYISTGLKENKFGIPIEQARSI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N L++ G CH+GS +T++ F +A ++ ID++ A G + +L++GGGL
Sbjct: 183 YRQAAALGN-LEIHGVDCHIGSQLTELSPFLEAVDKLLALIDQLAADGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y P+P + + +++ + R+L L+ EPGR++ AN L+ V +K K
Sbjct: 242 GVRY--DDETPPEPSHYAEELKKRLQGRHLTLVFEPGRAIAANAGVLLTKVEHLKPGEAK 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPA-PQDAEISKFDVVGPVCESADFLGKERELP 424
NF ++D +M +LIRP+LY A+Q I V +DA + +D+VGP+CE+ DF+GK+R L
Sbjct: 300 NFAIVDAAMNDLIRPALYSAWQAIIPVDKTLERDAAV--YDIVGPICETGDFIGKDRTLS 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY MAS YN + R E V
Sbjct: 358 ITE-GDLLAVRSAGAYGFVMASNYNSRPRAAEVMV 391
>gi|149194454|ref|ZP_01871551.1| Diaminopimelate decarboxylase [Caminibacter mediatlanticus TB-2]
gi|149135629|gb|EDM24108.1| Diaminopimelate decarboxylase [Caminibacter mediatlanticus TB-2]
Length = 402
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 216/365 (59%), Gaps = 5/365 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + KQA + SII YAIKAN+N +++ LG GA VS E++
Sbjct: 13 PLYVYDFNHFEKQYNELKQAFKARKSIIAYAIKANSNLSVIKKFASLGSGADCVSIGEVK 72
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVL 211
AL AG D K IF+G GK +++ A + + + NV+SE +L+ I ++ K+ +
Sbjct: 73 RALLAGVDKYKIIFSGVGKRDDEIKEALDKDILMLNVESEAELKRIDEIAKSMNKEARIS 132
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NPD+DP+ HPY++TG +KFG+ E + K N L +G H H+GS +T+
Sbjct: 133 IRVNPDIDPKTHPYISTGLSENKFGVDIESAKKMYINAKKSKN-LNPIGIHFHIGSQLTE 191
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ ++A+ ++ N + ++A ++ + +IGGGLGI Y + KP + + +
Sbjct: 192 LNPIKEASEIVANLVRSLKAINVDIKFFDIGGGLGIKYKDEETI--KPYDYAQAILSTLS 249
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
++ +I EPGR L+ N + V K NG K F+++DG+M +LIRPSLY+AY +E+
Sbjct: 250 GLDVTIICEPGRFLVGNGGWFLTKVLYEKVNGDKRFVIVDGAMNDLIRPSLYNAYHKVEV 309
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+S ++ +ISK ++VGPVCES DF K+ E+P + G +V+H AGAY +M+S YN +
Sbjct: 310 ISSV-KNPQISKANIVGPVCESGDFFAKDIEVPQTNPGDLIVIHSAGAYGFTMSSNYNTR 368
Query: 452 MRPPE 456
RP E
Sbjct: 369 PRPCE 373
>gi|418294041|ref|ZP_12905942.1| diaminopimelate decarboxylase [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379065425|gb|EHY78168.1| diaminopimelate decarboxylase [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 415
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 227/396 (57%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY ALEG+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALEGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGQPDRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GKK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGKKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L++VG CH+GS +T + F DA ++ D++ A+G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LEVVGVDCHIGSQLTSLPPFLDALARLLALTDRLAARGIQISHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALVE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|388602868|ref|ZP_10161264.1| diaminopimelate decarboxylase [Vibrio campbellii DS40M4]
gi|424029462|ref|ZP_17768995.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-01]
gi|424037315|ref|ZP_17776131.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-02]
gi|408886996|gb|EKM25645.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-01]
gi|408895682|gb|EKM31998.1| diaminopimelate decarboxylase [Vibrio cholerae HENC-02]
Length = 417
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PREGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|33594789|ref|NP_882432.1| diaminopimelate decarboxylase [Bordetella parapertussis 12822]
gi|33599061|ref|NP_886621.1| diaminopimelate decarboxylase [Bordetella bronchiseptica RB50]
gi|408416758|ref|YP_006627465.1| diaminopimelate decarboxylase [Bordetella pertussis 18323]
gi|410470882|ref|YP_006894163.1| diaminopimelate decarboxylase [Bordetella parapertussis Bpp5]
gi|412340630|ref|YP_006969385.1| diaminopimelate decarboxylase [Bordetella bronchiseptica 253]
gi|427812321|ref|ZP_18979385.1| diaminopimelate decarboxylase [Bordetella bronchiseptica 1289]
gi|427817370|ref|ZP_18984433.1| diaminopimelate decarboxylase [Bordetella bronchiseptica D445]
gi|33564865|emb|CAE39809.1| diaminopimelate decarboxylase [Bordetella parapertussis]
gi|33575107|emb|CAE30570.1| diaminopimelate decarboxylase [Bordetella bronchiseptica RB50]
gi|401778928|emb|CCJ64397.1| diaminopimelate decarboxylase [Bordetella pertussis 18323]
gi|408440992|emb|CCJ47401.1| diaminopimelate decarboxylase [Bordetella parapertussis Bpp5]
gi|408770464|emb|CCJ55258.1| diaminopimelate decarboxylase [Bordetella bronchiseptica 253]
gi|410563321|emb|CCN20855.1| diaminopimelate decarboxylase [Bordetella bronchiseptica 1289]
gi|410568370|emb|CCN16405.1| diaminopimelate decarboxylase [Bordetella bronchiseptica D445]
Length = 429
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 228/392 (58%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + D + P Y+YS+ + E Y+ A+ ++ + +KAN+N
Sbjct: 20 NGVLHAEDVPL-DSLAAQLGTPLYVYSRAALRSAWETYRDAIGERPVLVCFGMKANSNLA 78
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ +LG G +VSG EL L G DP K +F+G GK ++ A + V NV+S
Sbjct: 79 VLKEFARLGAGFDIVSGGELARVLAVGGDPAKVVFSGVGKQAWEMRAALEADVKCFNVES 138
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G++ V LR+NPDVD Q HPY++TG K +KFGI E
Sbjct: 139 EAELERLSDVAVSMGRRARVSLRVNPDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAA 198
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++VG CH+GS +T + + DA +++ I+++ G + +L++GGGLGI Y
Sbjct: 199 RLPG-VEVVGVDCHIGSQLTDISPYFDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRY- 256
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T + P P+ L+D V E + +R +L++++EPGRSL+ N L+ V +K +NF
Sbjct: 257 -TDEIPPSPKALLDRVFERINARGLGHLHIVLEPGRSLVGNAGVLLTTVQYLKHAEARNF 315
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY+AY ++ V+P D I ++DVVGPVCESAD+L + R L
Sbjct: 316 AIVDAAMNDLLRPALYEAYHGVQPVTPR-ADKRI-EYDVVGPVCESADWLARGRALAI-Q 372
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M MAS YN ++R E V
Sbjct: 373 AGDVLAVESAGAYSMVMASNYNTRVRAAEVMV 404
>gi|28899758|ref|NP_799363.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD
2210633]
gi|153838760|ref|ZP_01991427.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810]
gi|260365174|ref|ZP_05777739.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus K5030]
gi|260878126|ref|ZP_05890481.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AN-5034]
gi|260895817|ref|ZP_05904313.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus Peru-466]
gi|260900850|ref|ZP_05909245.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ4037]
gi|417320700|ref|ZP_12107242.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 10329]
gi|433659064|ref|YP_007276443.1| Diaminopimelate decarboxylase [Vibrio parahaemolyticus BB22OP]
gi|28808010|dbj|BAC61247.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD
2210633]
gi|149747846|gb|EDM58730.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810]
gi|308087170|gb|EFO36865.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus Peru-466]
gi|308092764|gb|EFO42459.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AN-5034]
gi|308110594|gb|EFO48134.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ4037]
gi|308111029|gb|EFO48569.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus K5030]
gi|328472415|gb|EGF43281.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 10329]
gi|432509752|gb|AGB11269.1| Diaminopimelate decarboxylase [Vibrio parahaemolyticus BB22OP]
Length = 417
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ +A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVPLQALAEQY-GTPLYVYSRATLERHWKAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T +D F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YQFAQSLPN-LNVQGIDCHIGSQLTSIDPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRNGEPQTYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 357 VLQEGDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|410611533|ref|ZP_11322631.1| diaminopimelate decarboxylase [Glaciecola psychrophila 170]
gi|410168951|dbj|GAC36520.1| diaminopimelate decarboxylase [Glaciecola psychrophila 170]
Length = 416
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 225/391 (57%), Gaps = 16/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV ++ V + P Y+YSK I R+ A+ +A +I YA+KAN+N +L
Sbjct: 11 LFAEDVALETVAH-IHGTPCYVYSKATIERHWHAFDRAAGSQPHLICYAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VSG EL L+AG DP+K +F+G GK +++ A + + NV+S +
Sbjct: 70 VMAKLGSGFDIVSGGELTRVLKAGGDPSKVVFSGVGKTHDEIAFALEHNIKCFNVESRSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + AGKK + +R+NPDVD + HPY++TG K++KFG+ ++ + P
Sbjct: 130 LTRINEVAEKAGKKAPISIRVNPDVDAKTHPYISTGLKDNKFGVERQQAVEIYKYAHSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G CH+GS IT++ F DA +++ ID++ + +L++GGGLG+ Y
Sbjct: 190 Y-LNVIGIDCHIGSQITELTPFVDALDILLALIDELAEHQIHIHHLDVGGGLGVTY--ND 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + R L LI EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 EKPPHPDQYTQAITERLKGREELLLIFEPGRAIMANAGILLTKVEFLKQGAEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK----FDVVGPVCESADFLGKERELPTPDR 428
+M +LIRP+LY A+Q+I P DA + + +DVVGP+CE+ DFLGK+REL +
Sbjct: 307 AMNDLIRPALYSAWQNI-----IPLDAGLERIKAIYDVVGPICETGDFLGKDRELAI-EP 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +MAS YN + + E +
Sbjct: 361 NDYLAVRSAGAYGFAMASNYNSRCKAAEVLI 391
>gi|339492625|ref|YP_004712918.1| diaminopimelate decarboxylase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
gi|338799997|gb|AEJ03829.1| diaminopimelate decarboxylase [Pseudomonas stutzeri ATCC 17588 =
LMG 11199]
Length = 415
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 226/396 (57%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY ALEG+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALEGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG +P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGEPGRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + G K V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGMKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L++VG CH+GS +T + F DA ++ ID++ +G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LEVVGVDCHIGSQLTSLPPFLDALDRLLALIDRLATRGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGLLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ V P DA ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNVVAVQPHEGDAR--RYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALAE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|301057683|ref|ZP_07198758.1| diaminopimelate decarboxylase [delta proteobacterium NaphS2]
gi|300448229|gb|EFK11919.1| diaminopimelate decarboxylase [delta proteobacterium NaphS2]
Length = 420
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 221/397 (55%), Gaps = 10/397 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + LYCEDV + + V P Y+YS + ++ +A+ A + + Y++
Sbjct: 2 HHFHYKENE-LYCEDVPISAIAAKV-GTPAYVYSHATLKQHFDAFDGAFGDVKHLTCYSM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
K+N+N +L G G +VSG EL AL AG DP++ +F+G GK L DL A +
Sbjct: 60 KSNSNKALLALFAGRGGGVDIVSGGELYRALNAGVDPSRIVFSGVGKSLSDLEYAVSSDI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
+ NV+S +L + +R G+K + +R+NPDVDP+ HPY++TG K +KFGI E +
Sbjct: 120 LMFNVESPQELLKLNQVAREKGRKARISIRVNPDVDPKTHPYISTGLKENKFGIGVEEAI 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + A +++VG CH+GS +T+ F DA + I ++ + YL++G
Sbjct: 180 RQYEKATTL--KGVEVVGVSCHIGSQLTRTSPFVDALKKLKELIARLEKMNIAIRYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y V P P+ ++ + S + LI+EPGR ++ N LV V KT+
Sbjct: 238 GGLGITY--DNEVPPHPKQYAQDIKRELASSDWTLILEPGRVIVGNAGILVAKVLYAKTS 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF V+D +M +L+RPSLY AY I+ V P E K DVVGP+CES DFL K+R
Sbjct: 296 HEKNFFVVDAAMNDLMRPSLYGAYHGIQPVKKTP--GERLKADVVGPICESGDFLAKDRL 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ T + V AGAY SM+STYN + R E V
Sbjct: 354 IETLTSEDLIAVMSAGAYGFSMSSTYNSRPRVCEVMV 390
>gi|288931191|ref|YP_003435251.1| diaminopimelate decarboxylase [Ferroglobus placidus DSM 10642]
gi|288893439|gb|ADC64976.1| diaminopimelate decarboxylase [Ferroglobus placidus DSM 10642]
Length = 419
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 229/402 (56%), Gaps = 14/402 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E++ V D++E P Y+ S ++ N+EAYK+A + YA+KANNN
Sbjct: 6 NGVLHVEELSVIDLVERF-GTPLYVTSYAKLKENIEAYKKAFNWARVL--YAVKANNNLA 62
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
I++ + K GA + S EL L+L AGFD +FNGN K E++ + GV +VDS
Sbjct: 63 IMKVIAKENFGADVFSQGELYLSLLAGFDKKFILFNGNSKSEEEIKAGIESGVKFSVDSV 122
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L I + G++V + R+NPD+DP+ HP +ATG K SKFGI E++
Sbjct: 123 DELYTISEIASEMGEEVEIAFRVNPDIDPKTHPKIATGLKKSKFGIPAEQVVETYRLALE 182
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN + +G HCH+GS IT++ F +A + + +++ G ++ ++++GGGLGIDY
Sbjct: 183 LPNVVP-IGIHCHIGSQITEISPFVEAVNKIFDLAERVEELGIDLKFVDVGGGLGIDYEG 241
Query: 312 TGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G +P P +L + + R+ L N L +EPGRSL+ NT L+ V VK K
Sbjct: 242 KG--VPTPEDLANALKPVYEERKSRLDSNPELWLEPGRSLVGNTTILLTRVNAVK-RAYK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF+ +D LIRP++Y AY I + + + E + VVGP+CES D LG++R+LP
Sbjct: 299 NFVAVDAGFNLLIRPAMYGAYHKIAVANKMDWEEE-EVYTVVGPICESGDVLGEDRKLPR 357
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
++G + V DAGAY M+S YN + R E V+ + +I
Sbjct: 358 VEKGDIIAVFDAGAYGFVMSSQYNGRPRCAEVLVKGSEAYVI 399
>gi|85859277|ref|YP_461479.1| diaminopimelate decarboxylase [Syntrophus aciditrophicus SB]
gi|85722368|gb|ABC77311.1| diaminopimelate decarboxylase [Syntrophus aciditrophicus SB]
Length = 427
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 224/391 (57%), Gaps = 9/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CE++ V + E V PFYLYS + + + +A + SII +A+KAN+N
Sbjct: 8 DQQLWCENIPVSQIAEEVGT-PFYLYSHATLRNHFRVFAEAFAKVPSIICFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L L G G +VSG EL AL+AG +P K +++G GK ++++ A + G+ + NV+S
Sbjct: 67 VLRVLIAEGGGVDIVSGGELYRALQAGVEPGKVVYSGVGKRVDEIEYALRSGILMFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAV 249
+LE I ++ G + LR+NPDVDP+ HP+++TG K +KFGI E+ L+ + A
Sbjct: 127 LQELEVINRCAQNLGVSAGIALRVNPDVDPKTHPHISTGLKENKFGIDIERSLETYRHAR 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
L + G CH+GS +T++ F +A + + +++ + F++ Y+++GGGLGI Y
Sbjct: 187 SLQ--HLDIRGVSCHIGSQVTRLSPFLEALERLSLLVHQLKREDFDIRYVDLGGGLGITY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+ P P + E + I EPGR ++ N LV V K+N KNFI+
Sbjct: 245 --NQEMPPHPSEYAKAILETSRDLDCTFIFEPGRVIVGNAGILVTRVLYTKSNDNKNFII 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M +L+RPSLY+++ I V + I+ DVVGP+CES D+L K R+L RG
Sbjct: 303 VDAGMNDLVRPSLYNSFHAIRPVIEENRKEIIA--DVVGPICESGDYLAKARKLKDFHRG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L V AGAY +MAS YN + R PE VR
Sbjct: 361 DLLAVFSAGAYGFTMASNYNSRPRIPEIMVR 391
>gi|110835189|ref|YP_694048.1| diaminopimelate decarboxylase [Alcanivorax borkumensis SK2]
gi|110648300|emb|CAL17776.1| diaminopimelate decarboxylase [Alcanivorax borkumensis SK2]
Length = 413
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 227/391 (58%), Gaps = 13/391 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E++ V+ + + P YLYS+ + R+ A+ +A + YA+KAN+N
Sbjct: 8 DGELFAEELPVEQLADRF-GTPLYLYSRAALERHYLAFDEAFGDHPHQVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L ++G G +VSG EL LRAG DP K +F+G GK ++ A + + NV+S
Sbjct: 67 VLNVLARVGAGFDIVSGGELERVLRAGGDPDKIVFSGVGKTANEMAAALKANIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + ++ + +R+NPDVD Q HPY++TG K++KFG+ K
Sbjct: 127 AAELELLNLVAGELDREAPIAIRVNPDVDAQTHPYISTGLKDNKFGVDITKAPALYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ +K++G CH+GS +TK+D F A ++ + +++ G E+ +L++GGGLG+ Y
Sbjct: 187 ELPH-IKILGIDCHIGSQLTKLDPFEAALERVLKLLAQLQEHGIEIHHLDLGGGLGVTYD 245
Query: 311 HTGAVLPKPRNLIDTVRELV--LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
P + D V+ L+ + L + IEPGRS+ AN V V +K KNF
Sbjct: 246 DE-----TPPDRSDYVQALLKHIPGELPVHIEPGRSIAANAGIFVTQVLFLKPTEHKNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++DG+M +LIRPSLY A+Q+I V P +A+ +D+VGPVCE+ DFLGK+R L +
Sbjct: 301 IVDGAMNDLIRPSLYSAWQNI--VPVKPHEADCRNWDIVGPVCETGDFLGKDRALAL-ET 357
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +MAS YN + RP E V
Sbjct: 358 GDLLAVRSAGAYGFAMASNYNSRNRPAEVMV 388
>gi|242279430|ref|YP_002991559.1| diaminopimelate decarboxylase [Desulfovibrio salexigens DSM 2638]
gi|242122324|gb|ACS80020.1| diaminopimelate decarboxylase [Desulfovibrio salexigens DSM 2638]
Length = 412
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 224/386 (58%), Gaps = 7/386 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E++ + ++ + P Y+YS + R+ EA+ A GL+ + Y++KAN+N +L+
Sbjct: 11 LHAENISITELAKEY-GTPLYIYSAATLRRHFEAFDSAFTGLDHMTCYSVKANSNLSVLK 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L ++G G +VSG EL AL+AG +K +F+G GK ++ A + + + NV+S +
Sbjct: 70 LLAEMGAGMDIVSGGELFRALKAGVPASKIVFSGVGKKAYEIAEALKADILMFNVESVGE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
+ I + K + RINPDVDP+ HPY++TG K +KFG+ E + K
Sbjct: 130 MHRINEVAESMNKTARISFRINPDVDPKTHPYISTGMKKNKFGLDMETAKEAYKTAKELS 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N + +G CH+GS +T ++ F +A ++ + D++ A G E+++L++GGGLGI Y
Sbjct: 190 N-VSPIGMDCHIGSQLTTIEPFLEALDKLLAFRDELGAMGIEIEHLDLGGGLGITYDEEE 248
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P+ + + + + + L +I+EPGR + N LV V K TK+F+++D +
Sbjct: 249 P--PHPKEFGEALSKALADKGLKVILEPGRVIAGNAGILVGEVIYTKKTPTKDFLIVDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L+RPSLY +Y I V+ + EI +DVVGP+CES DFL K+R LP +G +
Sbjct: 307 MNDLVRPSLYQSYHRIAEVTQNNR-PEID-YDVVGPICESGDFLAKDRMLPEMKQGELIA 364
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN ++R E V
Sbjct: 365 VFSAGAYGFTMSSNYNSRLRAAEIIV 390
>gi|398847846|ref|ZP_10604726.1| diaminopimelate decarboxylase [Pseudomonas sp. GM84]
gi|398251147|gb|EJN36428.1| diaminopimelate decarboxylase [Pseudomonas sp. GM84]
Length = 415
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 222/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G++ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSYTDALQGVDHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNILARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T VD F DA ++ ID++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVDPFLDALDRLLVLIDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEEP--PLVADYIKAIRERVGDRDLALVFEPGRYIVANAGALLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V+ P++ E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVT--PREGEGRAYDLVGPICETGDFLAKDRQLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVQSAGAYGFVMSSNYNTRGRCAEILV 389
>gi|444427395|ref|ZP_21222778.1| diaminopimelate decarboxylase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444239341|gb|ELU50910.1| diaminopimelate decarboxylase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 417
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGILLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRGGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|269103729|ref|ZP_06156426.1| diaminopimelate decarboxylase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163627|gb|EEZ42123.1| diaminopimelate decarboxylase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 417
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 231/398 (58%), Gaps = 15/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V Q + P Y+YS+ + R+ +A+ +A+ +I YA+KA
Sbjct: 4 FNYQQDGQLWAEQVSAQSLAAQY-GTPLYVYSRATLERHWQAFDRAVASHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L KLG G +VS EL + AG DP+K +F+G GK + ++ A G+
Sbjct: 63 NSNLAVLNVLAKLGSGFDIVSLGELERVIAAGGDPSKVVFSGVGKTVAEMTRALSLGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNQVAAELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGITFERA--- 179
Query: 246 LDAVK-AH--PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
LD + AH PN L +VG CH+GS +T++ F DA +++ ID + +G + +L++G
Sbjct: 180 LDVYRLAHRLPN-LNVVGMDCHIGSQLTEITPFIDAVDRLLSLIDTLADEGITIAHLDVG 238
Query: 303 GGLGIDYYHTGAVLPKPRNL-IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGLG+ Y P+P + I + L L LI EPGR++ AN L+ V +K
Sbjct: 239 GGLGVTYDQEQP--PEPSDYAIALLERLNQYPELELIFEPGRAIAANAGILLTRVEYLKH 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+ KNF ++D +M +LIRP+LY A+Q I + +P+ E+ +D+VGP+CE+ DF+G++R
Sbjct: 297 SEYKNFAIVDAAMNDLIRPTLYSAWQAI--IPASPRQGEMQTYDIVGPICETGDFIGRDR 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+L L V AGAY MAS YN + R E V
Sbjct: 355 QLALEPNDL-LAVRSAGAYGFVMASNYNTRARAAEVMV 391
>gi|27364546|ref|NP_760074.1| diaminopimelate decarboxylase [Vibrio vulnificus CMCP6]
gi|320154948|ref|YP_004187327.1| diaminopimelate decarboxylase [Vibrio vulnificus MO6-24/O]
gi|27360665|gb|AAO09601.1| diaminopimelate decarboxylase [Vibrio vulnificus CMCP6]
gi|319930260|gb|ADV85124.1| diaminopimelate decarboxylase [Vibrio vulnificus MO6-24/O]
Length = 417
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 233/398 (58%), Gaps = 15/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + + E P Y+YS+ + R+ A+ +++EG ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEEVSLTSLAEQY-GTPLYVYSRATLERHWHAFDRSVEGHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL L AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVLAAGGDPRKVVFSGVGKTEAEMRRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
NV+SE +LE + +R+AG+ K + LRINPDVD Q HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERL---NRVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRA 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
++ N L + G CH+GS +T ++ F DA ++ ID ++ QG + +L++G
Sbjct: 180 PAVYQFAQSLAN-LNVQGIDCHIGSQLTAIEPFIDATDRLLALIDDLKEQGINIRHLDVG 238
Query: 303 GGLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGLG+ Y + + P+P + L ++L LI EPGR++ AN L+ V +K
Sbjct: 239 GGLGVVYRNE--LPPQPSEYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKH 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGP+CE+ DFLGK+R
Sbjct: 297 TEHKNFAIIDAAMNDLMRPALYQAWQDI--VPVQPRQGEAVTYDLVGPICETGDFLGKDR 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + L V AGAY M+S YN ++R E V
Sbjct: 355 SLVLAENDL-LAVRSAGAYGFVMSSNYNTRVRAAEVMV 391
>gi|153873428|ref|ZP_02002015.1| diaminopimelate decarboxylase [Beggiatoa sp. PS]
gi|152070106|gb|EDN67985.1| diaminopimelate decarboxylase [Beggiatoa sp. PS]
Length = 414
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 229/390 (58%), Gaps = 9/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + V + P Y+YS+ + R+ A+ AL+ +I YA+KAN+N
Sbjct: 8 DGILYAEDVNLLTVAKAY-GTPCYVYSRATLERHWHAFDNALKNHRHLICYAVKANSNLT 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL LRAG DP K +F+G GK + ++ A + G+ NV+S
Sbjct: 67 VLSVLARLGSGFDIVSGGELERVLRAGGDPNKIVFSGVGKTVIEMRRALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
E +L + + GK V LR+NPDVD + HPY++TG K +KFGI N + + A
Sbjct: 127 EAELLRLNQVAGDMGKMAPVSLRVNPDVDAKTHPYISTGLKENKFGIDINSAIDVYKKA- 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
KA P+ L+++G CH+GS +T+ F DA ++ ++ +R + + ++++GGGLG+
Sbjct: 186 KALPH-LQIIGIDCHIGSQLTQTTSFVDALQRVIVLVNTLRDKNIHLQHIDLGGGLGV-R 243
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
YHT P+P N + + +++ +I+EPGR++ AN L+ V +K K+F +
Sbjct: 244 YHT-ETPPEPENYVQALTQVLGDTPYEIILEPGRAIAANAGVLLTKVEYLKHTADKHFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L+RP+LY A+Q I V P + E +D+VGP+CE+ DFLGK R L +
Sbjct: 303 VDAAMNDLLRPALYTAWQDILPVQPRKNETE-QNYDIVGPICETGDFLGKNRALALHESD 361
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +M+S YN + R E V
Sbjct: 362 V-LAVRTSGAYGFTMSSNYNTRPRVAELMV 390
>gi|146280906|ref|YP_001171059.1| diaminopimelate decarboxylase [Pseudomonas stutzeri A1501]
gi|386019203|ref|YP_005937227.1| diaminopimelate decarboxylase [Pseudomonas stutzeri DSM 4166]
gi|145569111|gb|ABP78217.1| diaminopimelate decarboxylase [Pseudomonas stutzeri A1501]
gi|327479175|gb|AEA82485.1| diaminopimelate decarboxylase [Pseudomonas stutzeri DSM 4166]
Length = 415
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 227/396 (57%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY ALEG+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALEGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG +P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGEPGRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + G K V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGMKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L++VG CH+GS +T + F DA ++ ID++ +G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LEVVGVDCHIGSQLTSLPPFLDALDRLLALIDRLATRGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGLLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALAE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|319899468|ref|YP_004159565.1| diaminopimelate decarboxylase [Bartonella clarridgeiae 73]
gi|319403436|emb|CBI77004.1| Diaminopimelate decarboxylase [Bartonella clarridgeiae 73]
Length = 424
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 221/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ ED+ + + + + PFY YS + N E Y+ A + +I YA+
Sbjct: 2 HFFSYH-QGELHAEDLSISTLAQDI-GTPFYCYSARALITNFENYQNAFRDMPYLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEG 183
KAN+N IL L + G GA +VS ELR AL AG K +++G GK ++++ A AQ+
Sbjct: 60 KANSNQAILRLLARSGAGADIVSEGELRRALSAGIPAHKIVYSGVGKTIKEIDFALAQDI 119
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + + LRINPDVD + H + TG +KFGI +
Sbjct: 120 RCFNVESEPELEQLSARAVALSTTARISLRINPDVDAKTHKKITTGKSENKFGIPLSSAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L + G H+GS I + F +A ++ +++ ++ G + +++IGG
Sbjct: 180 EVYKKAAQLPG-LYVCGVDIHIGSQICNLKPFENAFIITADFVRQLWGDGCAITHVDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y LP P + VR+ + +N+I+EPGRS++ LV V +K
Sbjct: 239 GLGISYGAEHYSLPSPFDYAALVRKHIAPLGINIILEPGRSIVGEAGILVTSVINLKRGK 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF ++D +M + IRP+LY+A+Q++ LV AP DA + DVVGP+CE+ D+LG R L
Sbjct: 299 ERNFFIVDAAMNDFIRPTLYEAWQNVLLVKEAPMDALLINADVVGPICETGDYLGLNRSL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G L V AGAY M++TYN ++ PE V+ ++ P
Sbjct: 359 PILSAGDLLAVTGAGAYGAVMSNTYNSRLLIPEVLVQGARYAVVRP 404
>gi|414170213|ref|ZP_11425827.1| diaminopimelate decarboxylase [Afipia clevelandensis ATCC 49720]
gi|410884885|gb|EKS32705.1| diaminopimelate decarboxylase [Afipia clevelandensis ATCC 49720]
Length = 421
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 210/389 (53%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + + V PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEDVSLARLADEVGT-PFYCYSTATLERHYRVFSGAFAGTPHLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL AL AG K +F+G GK ++L LA + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELMRALAAGIPANKILFSGVGKTADELRLAVSHDILCINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G+ + +R+NPDVD H ++TG +KFGI + +
Sbjct: 127 EPELEALSRIASAMGRTARISIRVNPDVDSGTHAKISTGKSENKFGIPIARAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A L+ ++ +R G + +++ GGGLG+ YY
Sbjct: 187 KLPG-IEVTGVDMHIGSQITDLGPMEAAFRLLAEFVTVLRGDGHTISHVDFGGGLGVPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
A P+P + V+ + + L+ EPGR ++ N LV+ V VK +NF++I
Sbjct: 246 EDRAAPPEPVAYAEMVKRVTHNLGCTLMFEPGRMIVGNAGILVSRVIYVKHGDARNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V A DA + DVVGPVCE+ D+L R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAYHQIMPVRAAAPDAPVLVADVVGPVCETGDYLALGRNLPEPKEGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY + TYN + PE V
Sbjct: 366 LLAIMTAGAYGAVQSGTYNTRALVPEVLV 394
>gi|120609686|ref|YP_969364.1| diaminopimelate decarboxylase [Acidovorax citrulli AAC00-1]
gi|120588150|gb|ABM31590.1| diaminopimelate decarboxylase [Acidovorax citrulli AAC00-1]
Length = 427
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 223/389 (57%), Gaps = 9/389 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E VR D+ + P Y+YSK + +EAY++ G I YA+KAN++ +L+
Sbjct: 19 LFIESVRAADLAQE-HGTPLYVYSKASMLSALEAYQRGFAGRKVQICYAMKANSSLGVLQ 77
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ GCG +VS ELR L AG + K IF+G GK +++ A + G+ NV+SE +
Sbjct: 78 LFARAGCGFDIVSAGELRRVLAAGGEAAKVIFSGVGKTRQEMREALEAGIGCFNVESEPE 137
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + G++ V +R+NP+VDP+ HPY++TG K +KFG+ +E+ A P
Sbjct: 138 LEVLNEVAMACGRRAPVSIRVNPNVDPKTHPYISTGLKGNKFGVAHERTVATYQRAAALP 197
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L++VG CH+GS IT+ + DA M++ + +I + G + +++ GGGLGIDY G
Sbjct: 198 G-LQVVGIDCHIGSQITEATPYLDAVDRMLDLVAQIESAGIPIHHIDFGGGLGIDY--NG 254
Query: 314 AVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P L + + +R + +IEPGRSL+ N + V VK KNF ++
Sbjct: 255 DTPPAADALWKQLLARLDARGYGDRQFMIEPGRSLVGNAGVCLTEVLYVKPGEQKNFCIV 314
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L RP++Y A+ I V+ +DA + +DVVGPVCES D++G++R L G
Sbjct: 315 DAAMNDLPRPAMYQAFHGIVPVAAPARDAATAVYDVVGPVCESGDWIGRDRTLAV-RAGD 373
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAYC SM STYN + RP E V
Sbjct: 374 RLAVLSAGAYCSSMGSTYNTRARPAEVLV 402
>gi|422323475|ref|ZP_16404514.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans C54]
gi|317401523|gb|EFV82153.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans C54]
Length = 430
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 234/402 (58%), Gaps = 17/402 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + + LY EDV + D + P Y+YS+ + + Y+ A+ ++ Y +
Sbjct: 14 HPYFQYRNNVLYAEDVPL-DHLAGQLGTPLYVYSRAALRAAWDTYRSAVGQRPVLVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL+ +LG G +VSG EL+ AL AG DP K +F+G GK + ++ A GV
Sbjct: 73 KANSNLAILKEFARLGAGFDIVSGGELKRALAAGADPAKIVFSGVGKQVWEMRAALAAGV 132
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L+ + ++ AG++ V LR+NPDVD Q HPY++TG K +KFGI +
Sbjct: 133 MCFNVESEAELQRLSDVAQEAGQRARVSLRVNPDVDAQTHPYISTGLKENKFGI---PIG 189
Query: 244 WFLDAVKAH---PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
LDA ++ P L++ G CH+GS +T + + DA +++ + + G + +L+
Sbjct: 190 AALDAYRSARLLPG-LEITGLDCHIGSQLTDISPYFDALEKLLDLVADLEGIGIRLSHLD 248
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVT 357
+GGGLGI Y + P P+ L+D V + + +R +L L++EPGRSL+ N L+ V
Sbjct: 249 LGGGLGIRY--NDEMPPSPKALLDHVFQRLQARGQDHLRLVLEPGRSLVGNAGVLLTTVQ 306
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K +NF V+D +M +L+RP+LYDA+ ++ + P D +DVVGPVCESAD+L
Sbjct: 307 YLKHGEARNFAVVDAAMNDLLRPALYDAWHGLQPLRPRAGD--TIDYDVVGPVCESADWL 364
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++R L ++ L + AGAY M+MA YN + R E V
Sbjct: 365 ARQRAL-VLEQDDVLALESAGAYGMTMAGNYNTRPRAAEVMV 405
>gi|256829250|ref|YP_003157978.1| diaminopimelate decarboxylase [Desulfomicrobium baculatum DSM 4028]
gi|256578426|gb|ACU89562.1| diaminopimelate decarboxylase [Desulfomicrobium baculatum DSM 4028]
Length = 423
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 226/403 (56%), Gaps = 18/403 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K +G L+ ED+ V D++ P Y+YS + R+ +A+ A +G++ + Y++
Sbjct: 2 HHFQYK-NGQLHAEDIAVADLVYEY-GTPLYIYSATTLKRHYKAFDSAFDGIDHLTCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N L+ L + G G +VSG EL ALRAG DP K +++G GK ++ QE +
Sbjct: 60 KANSNLSFLKILAQEGAGTDIVSGGELFRALRAGVDPKKIVYSGVGKKTVEI----QEAL 115
Query: 185 FV-----NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-R 238
F NV+S +LE I + K V LRINPDVDP+ HPYV+TG K +KFG+ R
Sbjct: 116 FADILMFNVESVQELERINDVAGGVDKVARVSLRINPDVDPKTHPYVSTGLKENKFGLSR 175
Query: 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+ L+ + A ++ PN ++ +G CH+GS +T++ F +A + + ++ G ++ Y
Sbjct: 176 ADALKAYALA-QSLPN-VEPIGMDCHIGSQLTQLSPFMEALEKLKEFHGQLVQMGIKIKY 233
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
+++GGGLGI Y P P L + E + ++ LI+EPGR + NT LV V
Sbjct: 234 MDLGGGLGITYNEEAP--PHPEELGKALIESLKGLDVTLILEPGRVIAGNTGILVTEVQY 291
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
KTN K F+++D +M +L+RPSLY +Y I V + E DVVGP+CES DFL
Sbjct: 292 TKTNEDKTFVIVDAAMNDLVRPSLYGSYHRIASVREG--NGEEMTADVVGPICESGDFLA 349
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
K R P +G L AGAY M+S YN + R E V
Sbjct: 350 KNRTFPKVAQGDLLAAFSAGAYGFVMSSQYNSRARAAEIMVEG 392
>gi|338973127|ref|ZP_08628496.1| diaminopimelate decarboxylase [Bradyrhizobiaceae bacterium SG-6C]
gi|338233699|gb|EGP08820.1| diaminopimelate decarboxylase [Bradyrhizobiaceae bacterium SG-6C]
Length = 421
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 210/389 (53%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + + V PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEDVSLARLADEVGT-PFYCYSTATLERHYRVFSGAFAGTPHLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL AL AG K +F+G GK ++L LA + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELMRALAAGIPANKILFSGVGKTADELRLAVSHDILCINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G+ + +R+NPDVD H ++TG +KFGI + +
Sbjct: 127 EPELEALSRIASAMGRTARISIRVNPDVDSGTHAKISTGKSENKFGIPIARAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A L+ ++ +R G + +++ GGGLG+ YY
Sbjct: 187 KLPG-IEVTGVDMHIGSQITDLGPMEAAFRLLAEFVTVLRGDGHTISHVDFGGGLGVPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
A P+P + V+ + + L+ EPGR ++ N LV+ V VK +NF++I
Sbjct: 246 EDRAAPPEPVAYAEMVKRVTHNLGCTLMFEPGRMIVGNAGILVSRVIYVKHGDARNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+AY I V A DA + DVVGPVCE+ D+L R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAYHQIVPVRAAAPDAPVLVADVVGPVCETGDYLALGRNLPEPKEGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY + TYN + PE V
Sbjct: 366 LLAIMTAGAYGAVQSGTYNTRALVPEVLV 394
>gi|37678270|ref|NP_932879.1| diaminopimelate decarboxylase [Vibrio vulnificus YJ016]
gi|37197009|dbj|BAC92850.1| diaminopimelate decarboxylase [Vibrio vulnificus YJ016]
Length = 417
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 232/398 (58%), Gaps = 15/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + + E P Y+YS+ + R+ A+ +++EG ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEEVSLTSLAEQY-GTPLYVYSRATLERHWHAFDRSVEGHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL L AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVLAAGGDPRKVVFSGVGKTEAEMRRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
NV+SE +LE + +R+AG+ K + LRINPDVD Q HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERL---NRVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRA 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
++ N L + G CH+GS +T ++ F DA ++ ID ++ QG + +L++G
Sbjct: 180 PAVYQFAQSLAN-LNVQGIDCHIGSQLTAIEPFIDATDRLLALIDDLKEQGINIRHLDVG 238
Query: 303 GGLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGLG+ Y + + P+P + L ++L LI EPGR++ AN L+ V +K
Sbjct: 239 GGLGVVYRNE--LPPQPSEYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKH 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGP+CE+ DFLGK+R
Sbjct: 297 TEHKNFAIIDAAMNDLMRPALYQAWQDI--VPVQPRQGEAVTYDLVGPICETGDFLGKDR 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + L V AGAY M+S YN + R E V
Sbjct: 355 SLVLAENDL-LAVRSAGAYGFVMSSNYNTRARAAEVMV 391
>gi|431928835|ref|YP_007241869.1| diaminopimelate decarboxylase [Pseudomonas stutzeri RCH2]
gi|431827122|gb|AGA88239.1| diaminopimelate decarboxylase [Pseudomonas stutzeri RCH2]
Length = 415
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 227/396 (57%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY AL+G+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALDGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGQPDRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GKK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGKKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L++VG CH+GS +T + F DA ++ D++ A+G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LEVVGVDCHIGSQLTSLPPFLDALDRLLALTDRLAARGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALVE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|350529713|ref|ZP_08908654.1| diaminopimelate decarboxylase [Vibrio rotiferianus DAT722]
Length = 417
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV +Q + E P Y+YS+ + R+ A+ A+ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLQALAEQ-HGTPLYVYSRATLERHWNAFDSAVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAKKVVFSGVGKTPAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T+++ F DA ++ ID ++ QG + +L++GGGL
Sbjct: 183 YQFAQSLPN-LNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKTQGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTRVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPIVPREGEAQTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|319956050|ref|YP_004167313.1| diaminopimelate decarboxylase [Nitratifractor salsuginis DSM 16511]
gi|319418454|gb|ADV45564.1| diaminopimelate decarboxylase [Nitratifractor salsuginis DSM 16511]
Length = 407
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 213/366 (58%), Gaps = 5/366 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y Q+ N K+A G S+I YA+KAN+N ++ KLG GA VS E+
Sbjct: 15 PLYVYDFDQMRENYRRLKEAFAGSKSLIAYAVKANSNLSVISLFGKLGAGADCVSLGEIL 74
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
A AG +P + IF+G GK +++ A +EG+ +N++SE ++ + ++ G++ +
Sbjct: 75 RARTAGIEPYRIIFSGVGKRDDEIEAALKEGILMINLESEAEMHRVEEVAQRLGQEARIS 134
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP+VDPQ HPY++TG +KFG+ ++ + K + + L VG H H+GS +T+
Sbjct: 135 IRVNPNVDPQTHPYISTGLHENKFGVEIDRAKRMYIYAK-NSDWLDPVGIHFHIGSQLTE 193
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ ++AA ++ + + + A G E+ + ++GGGLG+ Y + + E +
Sbjct: 194 LEPIKEAASIVADLVRSLAAIGIEIRFFDVGGGLGVVYRDETPI--DVEEYAKVITESIK 251
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
+L +I EPGR L AN L+ V K NG K F+++D +M +L+RP+LY AY +E
Sbjct: 252 GLDLTIICEPGRYLTANAGWLLTRVLYEKNNGAKRFVIVDAAMNDLMRPTLYQAYHGVEY 311
Query: 392 VSP-APQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
+ P A + E + D+VGP+CES D+L KER LP G L + AGAY +MAS YN
Sbjct: 312 LEPDAKERGEATPADLVGPICESGDWLAKERLLPPTRSGDLLAIRSAGAYGFTMASNYNT 371
Query: 451 KMRPPE 456
+ RP E
Sbjct: 372 RGRPAE 377
>gi|319761552|ref|YP_004125489.1| diaminopimelate decarboxylase [Alicycliphilus denitrificans BC]
gi|330823421|ref|YP_004386724.1| diaminopimelate decarboxylase [Alicycliphilus denitrificans K601]
gi|317116113|gb|ADU98601.1| diaminopimelate decarboxylase [Alicycliphilus denitrificans BC]
gi|329308793|gb|AEB83208.1| diaminopimelate decarboxylase [Alicycliphilus denitrificans K601]
Length = 429
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 222/394 (56%), Gaps = 14/394 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY ED R+ D+ P Y+YS+ + + + AY++ G I YA+KAN++
Sbjct: 16 DQALYLEDRRLSDLARE-HGTPLYVYSQASMLQALAAYQRGFAGRRVQICYAMKANSSLA 74
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ + GCG +VSG EL + AG DP K IF+G GK ++ A + G+ NV+S
Sbjct: 75 VLQLFAQHGCGFDIVSGGELERVMAAGGDPAKVIFSGVGKTRAEMRQALEAGIGCFNVES 134
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + ++ G + + +R+NP+VD + HPY++TG K +KFGI +E+ LD +
Sbjct: 135 EAELEVLSEVAQSMGLRAPISIRVNPNVDAKTHPYISTGLKGNKFGIAHERT---LDTYR 191
Query: 251 --AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A L++VG CH+GS IT+ + DA +++ + I A G + +++ GGGLGID
Sbjct: 192 RAAQLPGLRVVGIDCHIGSQITEETPYLDAMDRLLDLVQAIEAAGIAIHHIDFGGGLGID 251
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y G P L ++ + +R L+IEPGRSL+ N + V +K K
Sbjct: 252 Y--NGDTPPAADALWSSLLAKLDARGYGDRLLMIEPGRSLVGNAGVCLTQVLYLKPGEQK 309
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF V+D +M +L RP++Y AY I + A + E +DVVGP+CES D+LGK+R L
Sbjct: 310 NFCVVDAAMNDLPRPAMYQAYHAIVPLDAAAKAPE-QVYDVVGPICESGDWLGKDRSLAV 368
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V GAYC SM STYN + RP E V
Sbjct: 369 A-AGDMLAVLSTGAYCSSMGSTYNTRARPAEVLV 401
>gi|406595147|ref|YP_006746277.1| diaminopimelate decarboxylase [Alteromonas macleodii ATCC 27126]
gi|406372468|gb|AFS35723.1| putative diaminopimelate decarboxylase [Alteromonas macleodii ATCC
27126]
Length = 416
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 230/403 (57%), Gaps = 16/403 (3%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+ G L+ E V V D+ P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 7 SQGQLHAEQVAVSDIAAQ-HGTPVYIYSRATLERHWHAFNDAIGEHPHLVCYAVKANSNI 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG G +VS EL + AG D +K +F+G GK +++ A Q+G+ NV+
Sbjct: 66 GVLSVLAKLGSGFDIVSAGELARVIEAGGDASKVVFSGVGKKHDEIRYALQQGIMCFNVE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE +L I + G K + LRINPDVD + HPY++TG K +KFGI E+ +
Sbjct: 126 SEPELHRINQVAGEMGTKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYELA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P+ L +VG CH+GS +T++ F DA ++ ID++ + +++L++GGGLG+ Y
Sbjct: 186 ASLPH-LNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERNIIIEHLDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
+ P P+ + E ++ R NL LI+EPGR++ AN LV V +K K+F
Sbjct: 245 NNEQP--PHPKAYAQAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEEKSFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHI----ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
++D +M +L+RP+LY A+Q I E + P+ +DVVGPVCE+ DF+GK+REL
Sbjct: 303 IVDAAMNDLLRPALYSAWQKIIPVKEETTATPR-----IYDVVGPVCETGDFIGKDRELA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY MAS YN + RP E V +I++
Sbjct: 358 IEPTDL-LAVRSAGAYGFVMASNYNSRCRPAEIMVDGDKAIVV 399
>gi|116747509|ref|YP_844196.1| diaminopimelate decarboxylase [Syntrophobacter fumaroxidans MPOB]
gi|116696573|gb|ABK15761.1| diaminopimelate decarboxylase [Syntrophobacter fumaroxidans MPOB]
Length = 434
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 222/392 (56%), Gaps = 17/392 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCE V ++++ V P Y+YS + + + A EG+ + +++KAN+N +L
Sbjct: 21 LYCERVPLRELAARVGT-PCYVYSHATLLHHFTVFDSAFEGVPHLTCFSVKANSNLAVLR 79
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
LG G +VSG EL A +AG P K +++G GK LE++ A +E + + N++S +
Sbjct: 80 LFGSLGGGVDIVSGGELYRARQAGIAPDKIVYSGVGKTLEEIDYALRENILMFNIESTQE 139
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + G + + LR+NPDVDP HPY++TG K +KFGI + AVKA+
Sbjct: 140 LEAINARAAAFGCRARIALRVNPDVDPNTHPYISTGMKKNKFGIEIDS------AVKAYE 193
Query: 254 -----NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ +++VG CH+GS +T++ F DA + I+K+ A G + YL++GGGLGI
Sbjct: 194 RARSLDHVEVVGVDCHIGSQLTEISPFVDALKRLRLLIEKLEAVGITIQYLDLGGGLGIV 253
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P+PR + + + LI EPGR ++ N L+ V K +K+FI
Sbjct: 254 YDQEAP--PEPREYARAILRELKGMHCTLIFEPGRVIVGNAGVLLARVLYTKRTQSKSFI 311
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ D +M +LIRPSLY +Y ++ + +++ I DVVGP+CES DF+ K+R LP +
Sbjct: 312 ITDTAMNDLIRPSLYGSYHQVQPLRRQSRESHI--VDVVGPICESGDFIAKDRGLPMVES 369
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G L V AGAY +M+S YN + R E V+
Sbjct: 370 GDFLAVMSAGAYGFTMSSNYNSRPRAAEVLVK 401
>gi|189485646|ref|YP_001956587.1| diaminopimelate decarboxylase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287605|dbj|BAG14126.1| diaminopimelate decarboxylase [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 410
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 218/376 (57%), Gaps = 7/376 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V++ D+ + K Y+YSK +I N E YK+AL +I +A K N+N IL+
Sbjct: 9 LYIEQVKLSDIAKKY-KTSTYVYSKSKIVTNFENYKKALGSREGLICFACKTNSNGTILK 67
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L KLG GA SG E+ L+A FDP+K ++ G GK E++ A + +F+ NV+S +
Sbjct: 68 LLAKLGAGADTTSGGEIYRCLKADFDPSKIVYAGVGKTAEEIEYALKSRIFMFNVESFEE 127
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I + K + RINP VDP H Y+ TG K +KFGI E+ A K
Sbjct: 128 LDAIDKIAAKIKIKAKIAFRINPHVDPDTHSYIITGKKGTKFGIPYEEAVKAYLAAKQKK 187
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N ++++G H H+GS I +D FR AA + ++ + G +++Y+N GGGLG++Y
Sbjct: 188 N-IEILGIHSHIGSQILDIDSFRLAAQKIKKIVNIVEKNGIKLEYVNFGGGLGVEYKKDQ 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P+ LI + V N I EPGRS+IAN L+ V K +G K+F++ D
Sbjct: 247 KA-PSPKQLISELFP-VFDENKKFIFEPGRSIIANAGHLLVKVIYRKISGGKSFLITDAG 304
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY+AY I L D ++ K DVVGP+CES DF+GK+R LP ++G L+
Sbjct: 305 MNDLIRPTLYEAYHEI-LPVKMTNDKKV-KTDVVGPICESGDFMGKDRMLPFVEQGGYLL 362
Query: 434 VHDAGAYCMSMASTYN 449
+ AGAY +M+S YN
Sbjct: 363 ITCAGAYGFAMSSEYN 378
>gi|325982948|ref|YP_004295350.1| diaminopimelate decarboxylase [Nitrosomonas sp. AL212]
gi|325532467|gb|ADZ27188.1| diaminopimelate decarboxylase [Nitrosomonas sp. AL212]
Length = 417
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 234/400 (58%), Gaps = 14/400 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E V ++ + E P Y+YS+ +T+ +A+ A + +I +A+KAN+N
Sbjct: 11 DDELFVESVPLKQIAEKF-GTPCYVYSRSALTKAYQAFDTAFANRDHLICFAVKANSNIA 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL +LG G +VSG EL+ ++AG DP K +F+G GK ++ +A + + NV+S
Sbjct: 70 ILNLFAQLGSGFDIVSGGELQRVIKAGGDPGKTVFSGVGKSRYEMRMALEVNILCFNVES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + ++ K V LRINPDVD + HPY++TG K +KFGI + + +
Sbjct: 130 EAELIALNRIAKDMDKLAPVSLRINPDVDAKTHPYISTGLKENKFGIPAREAERIYKSAH 189
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+PN ++ +G CH+GS +T+++ F A+ M++ +D ++AQ E+++L++GGGLGI Y
Sbjct: 190 LYPN-IRFIGLDCHIGSQLTELEPFMQASKKMLHLLDSLQAQNLEIEHLDLGGGLGIRY- 247
Query: 311 HTGAVLPKPRNLIDTVRELVLSRN---LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+LP ++ D V L ++ + L+IEPGRSL+ N L+ + +K +NF
Sbjct: 248 -NDEILP---SISDYVSALCINTHQIKQRLLIEPGRSLVGNAGILLTRIEYLKHTPARNF 303
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LYDAY E++ EI + +VGPVCE+ DFLG +R + D
Sbjct: 304 AIVDAAMNDLMRPALYDAYH--EILPVHKNSGEIKDYQIVGPVCETGDFLGHDRRIGLID 361
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L + AGAY MSM+S YN + R E V + II
Sbjct: 362 -GNLLAIMSAGAYGMSMSSNYNSRPRAAEIMVDKDTTHII 400
>gi|90426344|ref|YP_534714.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB18]
gi|90108358|gb|ABD90395.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB18]
Length = 421
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 222/401 (55%), Gaps = 10/401 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ E V + + + V PFY YS + R+ + +A G+++++ YA+
Sbjct: 2 HHFDYR-NGVLHAEAVNLSSLADAV-GTPFYCYSTATLERHYRVFSEAFAGVDALVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEG 183
KAN+N +L L KLG GA +VSG EL+ A+ AG P K +F+G GK +L A A +
Sbjct: 60 KANSNQSVLRTLAKLGAGADVVSGGELQRAVAAGIPPQKILFSGVGKTATELRAALAHDI 119
Query: 184 VFVNVDSEFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+ +NV+SE +LE + SRIA G+ + +R+NPDVD H ++TG +KFGI
Sbjct: 120 LCINVESEPELE---LLSRIASEMGRTARISVRVNPDVDSGSHAKISTGKSENKFGIPIS 176
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+ + P LK+ G H+GS IT + A L+ +++ +R G + +++
Sbjct: 177 RAREVYARAAKLPG-LKVTGVDMHIGSQITDLAPLEVAFRLLADFVTVLRGDGHTISHVD 235
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
GGGLGI Y+ V P+P+ V+ + + L+ EPGR ++ N LV VT VK
Sbjct: 236 FGGGLGIPYFEEPGVPPEPQAYAAMVKRVTHNLGCTLMFEPGRLIVGNAGILVARVTYVK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF++ID +M +LIRP+LY+AY I V A + DVVGPVCES D+L +
Sbjct: 296 RGDAKNFVIIDAAMNDLIRPTLYEAYHDILPVQQAAPGSRDIVADVVGPVCESGDYLALD 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
R +P P G + + AGAY A TYN + PE V+
Sbjct: 356 RSMPEPAPGDLIAIMTAGAYGAVQACTYNTRALVPEVLVKG 396
>gi|115526828|ref|YP_783739.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisA53]
gi|115520775|gb|ABJ08759.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisA53]
Length = 421
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/407 (36%), Positives = 219/407 (53%), Gaps = 6/407 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F A G L+ E V + + E V PFY YS + R+ + +A ++++ YA+
Sbjct: 2 HHFDYNA-GVLHAEAVNLAVLAEAV-GTPFYCYSTATLERHYRVFTEAFADTDALVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L KLG GA +VSG E+ AL AG P+K +F+G GK +++L A +
Sbjct: 60 KANSNQSVLRTLAKLGAGADVVSGGEMARALAAGIPPSKIVFSGVGKTVDELRAALDHDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +LE + + GK + +R+NPDVD H ++TG +KFGI K +
Sbjct: 120 LCINVESEPELEMLSALAMSMGKTATISIRVNPDVDSGTHAKISTGKSENKFGIPLVKAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P L++ G H+GS IT + A L+ +++ +R G + +++ GG
Sbjct: 180 EVYARAAALPG-LRVTGVDVHIGSQITDLGPMEAAFRLLADFVTVLRGDGHTISHVDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI YY P+P V+ + + L+ EPGR ++ N LV V VK
Sbjct: 239 GLGIPYYEDPTTPPEPLAYAAMVKRITHNLGCRLMFEPGRMIVGNAGILVARVIHVKHGD 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
K F++ID +M +LIRP+LY+AY I + +PAP EI+ DVVGPVCE+ D+L R
Sbjct: 299 GKTFVIIDAAMNDLIRPTLYEAYHDILPIKAPAPGAGEITA-DVVGPVCETGDYLALSRR 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
LP G + + AGAY A TYN + PE V+ +I P
Sbjct: 358 LPALKSGDLIAIMTAGAYGAVQACTYNTRPLVPEVLVKGDQYAVIRP 404
>gi|452748542|ref|ZP_21948321.1| diaminopimelate decarboxylase [Pseudomonas stutzeri NF13]
gi|452007716|gb|EMD99969.1| diaminopimelate decarboxylase [Pseudomonas stutzeri NF13]
Length = 415
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 226/396 (57%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY AL+G+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALDGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGQPDRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GKK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGKKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L +VG CH+GS +T + F DA ++ D++ A+G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LDVVGVDCHIGSQLTSLPPFLDALDRLLALTDRLAARGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALVE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|407698421|ref|YP_006823208.1| diaminopimelate decarboxylase [Alteromonas macleodii str. 'Black
Sea 11']
gi|407247568|gb|AFT76753.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Black Sea 11']
Length = 416
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/401 (37%), Positives = 231/401 (57%), Gaps = 12/401 (2%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+ G L+ E V V D+ P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 7 SQGQLHAEQVAVSDIAAQ-HGTPVYIYSRATLERHWHAFNDAIGEHPHLVCYAVKANSNI 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG G +VS EL + AG D +K +F+G GK +++ A ++G+ NV+
Sbjct: 66 GVLSVLAKLGSGFDIVSAGELARVIEAGGDTSKVVFSGVGKKHDEIRFALEQGIMCFNVE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE +L I + G K + LRINPDVD + HPY++TG K +KFGI E+ +
Sbjct: 126 SEPELHRINQVAGEMGVKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYELA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P+ L +VG CH+GS +T++ F DA ++ ID++ + +++L++GGGLG+ Y
Sbjct: 186 ASLPH-LNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERNIIIEHLDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
+ P P+ + E ++ R NL LI+EPGR++ AN LV V +K K+F
Sbjct: 245 NNEQP--PHPKAYAQAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEEKSFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK--FDVVGPVCESADFLGKERELPTP 426
++D +M +L+RP+LY A+Q I P ++A + +DVVGPVCE+ DF+GK+REL
Sbjct: 303 IVDAAMNDLLRPALYSAWQKI---IPVKEEATATPRIYDVVGPVCETGDFIGKDRELAIE 359
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY MAS YN + RP E V +I++
Sbjct: 360 PTDL-LAVRSAGAYGFVMASNYNSRCRPAEIMVDGDKAIVV 399
>gi|261210168|ref|ZP_05924465.1| diaminopimelate decarboxylase [Vibrio sp. RC341]
gi|260840708|gb|EEX67257.1| diaminopimelate decarboxylase [Vibrio sp. RC341]
Length = 417
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQDDGQLWAEQVPLADLANQY-GTPLYIYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAQGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 391
>gi|163759920|ref|ZP_02167004.1| probable diaminopimelate dap decarboxylase protein [Hoeflea
phototrophica DFL-43]
gi|162282878|gb|EDQ33165.1| probable diaminopimelate dap decarboxylase protein [Hoeflea
phototrophica DFL-43]
Length = 422
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 216/390 (55%), Gaps = 3/390 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY E V V D+ V PFY YS +TR+ + + A ++S++ YA+KAN+N
Sbjct: 8 EGVLYAEGVSVPDIAAEV-GTPFYCYSTATLTRHYQVFAGAFSDIDSMVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VS ELR AL AG ++ +F+G GK + ++ A ++ N++S
Sbjct: 67 VLKTLAKLGSGVDVVSEGELRRALAAGIPASRIMFSGVGKTIREMDAALAADIYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + RINPDVD + H ++TG K KFGI ++ +
Sbjct: 127 EPELEVLNARALAIGKVAPISFRINPDVDAKTHAKISTGKKEDKFGISWQRARDVYRHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT++ F DA LM+ I +R+ G +D+ +IGGGLG+ Y
Sbjct: 187 TLPG-VKVTGIDMHIGSQITELQPFDDALKLMIELIGVLRSDGHIIDHFDIGGGLGVPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + +I+EPGR ++AN LV V VK G K F+++
Sbjct: 246 DDNTPPPDPDAYGKMVKARLGDLGCKVILEPGRLIVANAGVLVTEVVYVKDGGDKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ + V + A + D+VGPVCES D+L K+RE+ G
Sbjct: 306 DAAMNDLIRPTLYDAWHEVRAVRLSAASAPRIRADIVGPVCESGDYLAKDREMAAVKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L V AGAY A TYN + PE V+
Sbjct: 366 LLAVGSAGAYGAVQAGTYNTRPLIPEVLVK 395
>gi|335423869|ref|ZP_08552887.1| diaminopimelate decarboxylase [Salinisphaera shabanensis E1L3A]
gi|334890620|gb|EGM28882.1| diaminopimelate decarboxylase [Salinisphaera shabanensis E1L3A]
Length = 420
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 222/392 (56%), Gaps = 10/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L E V + ++ E P Y+YS I R+ + +AL G++ I +A+KAN N
Sbjct: 8 DGVLCAEGVALPEIAERF-GTPCYVYSAATIARHYRVFDEALAGIDHEICFAVKANGNIG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L LG G +VS EL + AG DP K +F+G GK ++++ A + G+ NV+S
Sbjct: 67 VLGLLADLGSGFDIVSVGELERVITAGGDPAKIVFSGVGKRVDEIERALEVGIACFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + ++ GK V LR+NPDVD Q HPY+ATG K +KFG+ + +
Sbjct: 127 EAELERLDAIAQRVGKTAPVSLRVNPDVDAQTHPYIATGLKENKFGVDIARAEALYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P L + G CH+GS +T++ FRDA ++ ID++ + +D+L++GGGLGI Y
Sbjct: 187 EMPG-LMIRGVDCHIGSQLTQLAPFRDAVKRVLALIDRLAERDIVIDHLDVGGGLGIRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK---TNGTKNF 367
P P + +R+LV R+L L+ EPGR L+ N L+ V +K + K+F
Sbjct: 246 DE--TPPSPAAYAENIRDLVADRDLKLVFEPGRVLVGNAGVLLTRVELLKPGQSEDDKHF 303
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
V+D +M +L+RP+LYD + I V+P D + +++VGP+CE+ DFLG REL
Sbjct: 304 AVVDAAMNDLLRPALYDGWHEIVAVAPR-GDTQARAWEIVGPICETGDFLGHGRELALAA 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +MAS+YN + R E V
Sbjct: 363 N-DLLAVRSAGAYGFTMASSYNARPRVAEIMV 393
>gi|451946317|ref|YP_007466912.1| diaminopimelate decarboxylase [Desulfocapsa sulfexigens DSM 10523]
gi|451905665|gb|AGF77259.1| diaminopimelate decarboxylase [Desulfocapsa sulfexigens DSM 10523]
Length = 423
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 153/395 (38%), Positives = 224/395 (56%), Gaps = 15/395 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+CED+ V D+ + V PFYLYSK +TR+ +A+ EG++ I +A+K+ +N
Sbjct: 8 NGELFCEDLAVSDIAKEV-GTPFYLYSKATLTRHFQAFDSGFEGIDHITCFAVKSCSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
IL LG GA +VSG EL AL+AG DP K I++G GK +L Q + F NV+S
Sbjct: 67 ILSLFGGLGGGADIVSGGELFRALQAGIDPGKIIYSGVGKTESELRYGLQSNILFFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
E +L + + G K V R+NPDVDP+ H Y++TG +KFGI +E L +L A
Sbjct: 127 EQELHRLNTVAADMGVKAPVSFRVNPDVDPKTHAYISTGLAKNKFGIPIHEALDLYLQAE 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
E+K G CH+GS +T + F + + ++ ++ + Y+++GGG+GI Y
Sbjct: 187 AMEHIEVK--GVSCHIGSQLTLISPFVETLRKLKAFVGRLAENEITIQYIDLGGGVGITY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN----GTK 365
P P+ ++E + + LI+EPGR ++ N LV V K+N K
Sbjct: 245 DDEEP--PHPKEYASAIKEELDGLSATLILEPGRVIVGNAGILVTEVQYTKSNRGGAEEK 302
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKF-DVVGPVCESADFLGKERELP 424
+F+V+D M +L RPSLY AY IE P +D ++ + DVVGP+CE+ DFLGK+ LP
Sbjct: 303 HFVVVDAGMNDLTRPSLYGAYHRIE---PVKEDVDLVQVADVVGPICETGDFLGKDIRLP 359
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++G L V AGAY +MAS YN + R E V
Sbjct: 360 HVEQGDLLAVFSAGAYGFTMASNYNSRPRVAEVMV 394
>gi|421618339|ref|ZP_16059316.1| diaminopimelate decarboxylase [Pseudomonas stutzeri KOS6]
gi|409779670|gb|EKN59323.1| diaminopimelate decarboxylase [Pseudomonas stutzeri KOS6]
Length = 415
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 225/396 (56%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY AL+G+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALDGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSSGELERVLAAGGQPDRIVFSGVGKTRDDMRRALDVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GKK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGKKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L +VG CH+GS +T + F DA ++ +D++ +G ++ +L++GG
Sbjct: 180 AVYTRAAELPN-LDVVGVDCHIGSQLTSLPPFLDALDRLLALVDRLAERGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ V+ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--VAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALVE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|344172691|emb|CCA85345.1| diaminopimelate decarboxylase [Ralstonia syzygii R24]
Length = 419
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 224/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK ++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTANEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA ++N + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLNVVARLDAEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D + + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARMLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI VS + + +D+VGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHI--VSVRERGGAPTVYDIVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|320102687|ref|YP_004178278.1| diaminopimelate decarboxylase [Isosphaera pallida ATCC 43644]
gi|319749969|gb|ADV61729.1| diaminopimelate decarboxylase [Isosphaera pallida ATCC 43644]
Length = 472
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/407 (38%), Positives = 218/407 (53%), Gaps = 19/407 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + DG LYCE V +D+ P Y+YS+ +E + + +I Y++KA
Sbjct: 6 FFEYRDGTLYCEGVAARDLAARFGT-PLYVYSRAAFLAALEELQSVFAEFDPVICYSVKA 64
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
N+N +L+ L G G +VS ELR AG DP + +F G GK E++ A + GV +
Sbjct: 65 NSNLSVLKMLAAHGSGFDVVSSGELRRVEEAGGDPGRTVFAGVGKTDEEIAHALKSGVLM 124
Query: 187 -NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ I SR G + V R+NPDVDPQ H Y++TG+K SKFG+ +
Sbjct: 125 FNVESEAELDAIDRVSREHGLQAPVAPRVNPDVDPQTHRYISTGHKESKFGMDITRALRL 184
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ + +K+VG H H+GS ITK + DAA + + +R QG + +LN+GGG
Sbjct: 185 TERARDMAG-IKVVGLHMHIGSQITKTQPYADAAAKAADLVATMRGQGHAIQWLNLGGGF 243
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
GIDY A +P V + + L +EPGR + N L++ V K +G
Sbjct: 244 GIDYRGGEA---QPITAYAAVMAPAIRASGCRLALEPGRRVAGNAGVLLSRVIFTKVSGD 300
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEI------------SKFDVVGPVCE 412
K F++ D +M +L+RPSLY A+ I V + Q +I +DVVGPVCE
Sbjct: 301 KRFLIQDAAMNDLLRPSLYQAFHKIWPVEASMQPPDIPAGHDGSQPGASDAWDVVGPVCE 360
Query: 413 SADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
S DFL K+R LP +RG L V AGAY M MAS YN + RP E V
Sbjct: 361 SGDFLAKDRPLPPLERGDLLAVFSAGAYGMVMASNYNTRPRPAEVLV 407
>gi|394989914|ref|ZP_10382747.1| hypothetical protein SCD_02340 [Sulfuricella denitrificans skB26]
gi|393791414|dbj|GAB72386.1| hypothetical protein SCD_02340 [Sulfuricella denitrificans skB26]
Length = 414
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 228/401 (56%), Gaps = 20/401 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + D L E V + + E P Y+YS +T +++ A +I YA+KA
Sbjct: 3 FFSRHDAELCVESVPLSRIAEEF-GTPCYVYSHAALTAAYQSFDSAFSQREHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N++ IL +LG G +VSG EL L AG D K +F+G GK +++ A + G+
Sbjct: 62 NSSLAILNLFARLGAGFDIVSGGELARVLAAGGDAKKVVFSGVGKTADEMRQALEAGILC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + GK+ V LR+NPDVDP+ HPY++TG K +KFGI +
Sbjct: 122 FNVESESELERLNKIAGEMGKRAPVSLRVNPDVDPKTHPYISTGLKGNKFGI------AY 175
Query: 246 LDAVKAHPN-----ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
DAV+ + L + G CH+GS IT+V F DA ++ ID ++ + E+ +L+
Sbjct: 176 TDAVRLYCKARDLPHLDVAGIDCHIGSQITEVTPFADALDKILLLIDALKNENIEIHHLD 235
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
+GGGLGI Y + P + DT+ E + RN +++EPGR+L+ N L+ V +K
Sbjct: 236 LGGGLGICY--SDETPPPVTDYADTLLEKLADRNFKILLEPGRALVGNAGLLLTKVEYLK 293
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEIS-KFDVVGPVCESADFLGK 419
TKNF ++D +M +L+RP+LYDAY I P ++ ++ ++++VGPVCES DFLG
Sbjct: 294 HGDTKNFALVDAAMNDLMRPALYDAYHAI---LPVMENTGVAQRYEIVGPVCESGDFLGH 350
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+R L + G L V AGAY MSM+S YN + R E V+
Sbjct: 351 DRHLHLAE-GDLLAVMSAGAYGMSMSSNYNTRPRVAEIIVQ 390
>gi|261323926|ref|ZP_05963123.1| diaminopimelate decarboxylase [Brucella neotomae 5K33]
gi|261299906|gb|EEY03403.1| diaminopimelate decarboxylase [Brucella neotomae 5K33]
Length = 421
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGAGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + +L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLSLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|429463044|ref|YP_007184507.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811825|ref|YP_007448280.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338558|gb|AFZ82981.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776983|gb|AGF47982.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 422
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/409 (36%), Positives = 231/409 (56%), Gaps = 21/409 (5%)
Query: 60 TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSI 119
T +++ + K + L+ ED+ ++ + E + P Y+YS+ I + Y A++ N++
Sbjct: 2 TNQIKNPYLKLKNNILHLEDISLEFLSEKI-GTPLYVYSRANIKDSWNRYYNAIKNNNAM 60
Query: 120 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179
+ Y +KAN+N IL+ LG G +VSG EL L G DP K +F+G GK ++ A
Sbjct: 61 VCYGMKANSNLAILKEFVNLGSGFDIVSGGELERVLSVGGDPKKIVFSGVGKQEWEIKNA 120
Query: 180 AQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238
+ G+ NV+SE +L I + + LR+NPDVD + HPY++TG K +KFGI
Sbjct: 121 LESGIKCFNVESEAELYKISQIASALKITAPISLRVNPDVDAKTHPYISTGLKENKFGIA 180
Query: 239 NEKLQWFLDAVKAHPNE-----LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQG 293
F DA + +K++G CH+GS +T++ F A ++ I +
Sbjct: 181 ------FKDAFDCYKIASSLPFIKIIGIDCHIGSQLTEISPFSAALEKIIPLIKNLIDNN 234
Query: 294 FEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTC 350
+ +++IGGGLGI Y ++P P++++D R + NLN LI+EPGRSLI N+
Sbjct: 235 INIKHIDIGGGLGITY--KDEIVPDPKDIVDAARFKLKEANLNHLELILEPGRSLIGNSG 292
Query: 351 CLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPV 410
L+ V +K + KNFI++D +M +LIRP+LY +Y ++ V A ++D+VGPV
Sbjct: 293 ILLTKVLYLKHSDDKNFIIVDAAMNDLIRPALYQSYHEVQQVKARTGQAR--EYDIVGPV 350
Query: 411 CESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
CESAD+L K R L + LV+ AGAYC +MAS YN +++P E V
Sbjct: 351 CESADWLAKNRLLTVKENDL-LVIESAGAYCTTMASNYNSRVKPAEVMV 398
>gi|330444897|ref|ZP_08308552.1| diaminopimelate decarboxylase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489207|dbj|GAA03049.1| diaminopimelate decarboxylase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 416
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 232/396 (58%), Gaps = 17/396 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + + L+ EDV + + E P Y+YS+ + R+ +A+ +A+ +I YA+KA
Sbjct: 4 FNYQQNDQLWAEDVPLAQLAEQY-GTPLYVYSRATLERHWKAFDEAVATQPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNVLARLGSGFDIVSQGELERVIAAGGDPAKVVFSGVGKTSAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + + G + LRINPDVD + HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNLVAEQLGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFERAVEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ LK+VG CH+GS +T++ F DA ++ +D+++A+G +++L++GGGL
Sbjct: 183 YRLAHSLPH-LKVVGMDCHIGSQLTEITPFIDATDRLLALVDELKAEGIAIEHLDLGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVK 360
G+ Y LP D + L L R L LI EPGR++ AN L+ V +K
Sbjct: 242 GVTYSDEQPPLPA-----DYAKAL-LGRLESYPELELIFEPGRAIAANAGVLLTKVEFLK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +LIRP+LY A+Q I V+P +A++ +D+VGP+CE+ DF+GK+
Sbjct: 296 HTEHKNFAIVDAAMNDLIRPTLYSAWQDIVPVTPRQGEAQV--YDLVGPICETGDFIGKD 353
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
R L +G L V AGAY MAS YN + R E
Sbjct: 354 RSLCLA-QGDLLAVRSAGAYGFVMASNYNTRARAAE 388
>gi|407685953|ref|YP_006801126.1| diaminopimelate decarboxylase [Alteromonas macleodii str. 'Balearic
Sea AD45']
gi|407289333|gb|AFT93645.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 416
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 230/403 (57%), Gaps = 16/403 (3%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+ G L+ E V V D+ P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 7 SQGQLHAEQVAVSDIAAQ-HGTPVYIYSRATLERHWHAFNDAIGEHPHLVCYAVKANSNI 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG G +VS EL + AG D +K +F+G GK +++ A ++G+ NV+
Sbjct: 66 GVLSALAKLGSGFDIVSAGELARVIEAGGDTSKVVFSGVGKKHDEIRFALEQGIMCFNVE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE +L I + G K + LRINPDVD + HPY++TG K +KFGI E+ +
Sbjct: 126 SEPELHRINQVAGEMGVKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYELA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P+ L +VG CH+GS +T++ F DA ++ ID++ + +++L++GGGLG+ Y
Sbjct: 186 ASLPH-LNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERNIIIEHLDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
+ P P+ + E ++ R NL LI+EPGR++ AN LV V +K K+F
Sbjct: 245 NNEQP--PHPKAYAQAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEEKSFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHI----ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
++D +M +L+RP+LY A+Q I E + P+ +DVVGPVCE+ DF+GK+REL
Sbjct: 303 IVDAAMNDLLRPALYSAWQKIIPVKEETTATPR-----IYDVVGPVCETGDFIGKDRELA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY MAS YN + RP E V +I++
Sbjct: 358 IEPTDL-LAVRSAGAYGFVMASNYNSRCRPAEIMVDGDKAIVV 399
>gi|254447342|ref|ZP_05060808.1| diaminopimelate decarboxylase [gamma proteobacterium HTCC5015]
gi|198262685|gb|EDY86964.1| diaminopimelate decarboxylase [gamma proteobacterium HTCC5015]
Length = 418
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 221/393 (56%), Gaps = 8/393 (2%)
Query: 68 SKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN 127
S++ DG L + V ++ + T P Y+YS+ I AY +AL +I YA+KAN
Sbjct: 9 SQRVDGELCIDGVSLKRIASTY-GTPAYVYSRQHIESAWRAYDEALGSWPHLICYAVKAN 67
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FV 186
+N +L L KLG G +VSG EL LRAG + +F+G GK E++ A G+
Sbjct: 68 SNLGVLSVLAKLGAGFDIVSGGELERVLRAGGEAKNIVFSGVGKTAEEMRRALDVGIRCF 127
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NV+S +L + + GK + LR+NPDVD Q HPY++TG K +KFG+ ++
Sbjct: 128 NVESHAELLRLNRVAEEMGKTAPISLRVNPDVDAQTHPYISTGLKENKFGVAVDQALAVY 187
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
A PN + + G CH+GS +T +D F DA ++ +D++ A+ E+ +L++GGGLG
Sbjct: 188 READALPN-IAIHGLDCHIGSQLTTIDPFVDALKRVLALVDQLAAEDIEIHHLDLGGGLG 246
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y P L+ + + R L+ EPGRS++ N L+ V +K + KN
Sbjct: 247 ICYRDEQP--PAVAELMQALTNTLGERRFELLFEPGRSIVGNAGVLLTQVEYLKHSDDKN 304
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L+RPSLY A+Q I+ V +A+ +D+VGP+CE+ DFLGK+REL
Sbjct: 305 FAIVDAAMNDLMRPSLYSAWQAIDAVEQREGNAK--PYDIVGPICETGDFLGKDREL-VL 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V GAY +MAS YN + R E V
Sbjct: 362 EEGDLLAVQSCGAYGFTMASNYNTRPRAVELMV 394
>gi|254427501|ref|ZP_05041208.1| diaminopimelate decarboxylase [Alcanivorax sp. DG881]
gi|196193670|gb|EDX88629.1| diaminopimelate decarboxylase [Alcanivorax sp. DG881]
Length = 413
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 228/391 (58%), Gaps = 13/391 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E++ V+ + + P YLYS+ + R+ A+ +A + YA+KAN+N
Sbjct: 8 DGELFAEELPVEQLADRF-GTPLYLYSRAALERHYLAFDEAFGDHPHQVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L + G G +VSG EL LRAG DP K +F+G GK +++ A + + NV+S
Sbjct: 67 VLNVLARCGAGFDIVSGGELERVLRAGGDPDKIVFSGVGKTADEMAAALKANIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + ++ + +R+NPDVD Q HPY++TG K++KFG+ K
Sbjct: 127 AAELELLNLVAGELDREAPIAIRVNPDVDAQTHPYISTGLKDNKFGVDITKAPALYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ ++++G CH+GS +TK+ F DA ++ + +++ G E+ +L++GGGLG+ Y
Sbjct: 187 ELPH-IRILGIDCHIGSQLTKLAPFEDALERVLKLLAQLQEHGIEIHHLDLGGGLGVTYD 245
Query: 311 HTGAVLPKPRNLIDTVRELV--LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
P + V+ L+ + L + IEPGRS+ AN + V +K KNF
Sbjct: 246 DE-----TPPDRSAYVQALLKHIPGELPVHIEPGRSIAANAGLFITQVLFLKPTEHKNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++DG+M +LIRPSLY A+Q+I V P DA+ ++D+VGPVCE+ DFLGK+R L + +
Sbjct: 301 IVDGAMNDLIRPSLYSAWQNI--VPVKPHDADCREWDIVGPVCETGDFLGKDRAL-SLET 357
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +MAS YN + RP E V
Sbjct: 358 GDLLAVRSAGAYGFAMASNYNSRNRPAEIMV 388
>gi|451936778|ref|YP_007460632.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777701|gb|AGF48676.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 420
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 236/400 (59%), Gaps = 13/400 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + L+ E++ V ++E +E P Y+YSK + ++Y QA++ N +I Y +
Sbjct: 4 HNFKFK-NNLLFVENISVNSIVEKLE-TPLYIYSKKAMKEAWDSYYQAIKNRNCLICYGM 61
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ KLG G +VSG EL L DP K +F+G GK ++ A + G+
Sbjct: 62 KANSNLAVLKEFSKLGSGFDIVSGGELERVLAIKADPKKIVFSGVGKQSWEIEKAIKAGI 121
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
NV+SE +L+NI ++ G + LR+NPDVD HPY++TG K +KFG+ N
Sbjct: 122 KCFNVESEAELQNISKIAKKVGIVAPISLRVNPDVDANTHPYISTGLKENKFGVSINTAY 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ A+K PN L++VG CH+GS +T++ F D+ ++ I+KI A G ++ +++IG
Sbjct: 182 DCYQTAIKL-PN-LEIVGIDCHIGSQLTEIKPFIDSLEKIILLINKINASGIQIKHIDIG 239
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRN---LNLIIEPGRSLIANTCCLVNHVTGV 359
GG+GI Y + PK L+D V + + N L +I+EPGRSLI N LV + +
Sbjct: 240 GGIGIQYKEESCISPKE--LVDKVFDKLEDNNLGHLQVILEPGRSLIGNAGILVTKIQYL 297
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K + +NF ++D +M ++IRP+LY +Y E+V+ +D ++DVVGP+CES+D+L K
Sbjct: 298 KESEDRNFAIVDAAMNDIIRPALYHSYH--EIVTVVERDGIKKEYDVVGPICESSDWLAK 355
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L G L + GAYCM+MAS YN + R E V
Sbjct: 356 NRYLNELQEGELLAIESVGAYCMTMASNYNTRGRAAEVMV 395
>gi|326315781|ref|YP_004233453.1| diaminopimelate decarboxylase [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372617|gb|ADX44886.1| diaminopimelate decarboxylase [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 427
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 221/389 (56%), Gaps = 9/389 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E VR D+ + + P Y+YS+ + +EAY++ G I YA+KAN++ +L+
Sbjct: 19 LFIESVRAADLAQELGT-PLYVYSRASMLSALEAYQRGFAGRKVQICYAMKANSSLAVLQ 77
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ GCG +VS ELR L AG + K IF+G GK +++ A + G+ NV+SE +
Sbjct: 78 LFARAGCGFDIVSAGELRRVLAAGGEAGKVIFSGVGKTRQEMREALEAGIGCFNVESEPE 137
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + G++ V +R+NP+VDP+ HPY++TG K +KFG+ +E+ A P
Sbjct: 138 LEVLSEVAMACGRRAPVSIRVNPNVDPKTHPYISTGLKGNKFGVAHERTVATYQRAAALP 197
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L++VG CH+GS IT+ + DA M++ + +I + G + +++ GGGLGIDY G
Sbjct: 198 G-LQVVGIDCHIGSQITEATPYLDAVDRMLDLVAQIESAGIPIHHIDFGGGLGIDY--NG 254
Query: 314 AVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P L + + +R + +IEPGRSL+ N + V VK KNF ++
Sbjct: 255 DTPPAADALWTQLLARLDARGYGDRQFMIEPGRSLVGNAGVCLTEVLYVKPGEQKNFCIV 314
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L RP++Y A+ I V+ A + +DVVGPVCES D++G++R L G
Sbjct: 315 DAAMNDLPRPAMYQAFHGIVPVAAPAPGAAPAVYDVVGPVCESGDWIGRDRTLAVRS-GD 373
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAYC SM S YN + RP E V
Sbjct: 374 RLAVLSAGAYCSSMGSNYNTRARPAEVLV 402
>gi|145300547|ref|YP_001143388.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418361282|ref|ZP_12961938.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142853319|gb|ABO91640.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356687640|gb|EHI52221.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 416
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/403 (38%), Positives = 234/403 (58%), Gaps = 9/403 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ QA + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQTSLQHLAEQY-GTPLYVYSRATLERHWHAFDQAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E+
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++ G CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIKGVDCHIGSQLTELNPFMEAADKLLRLIDTLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K T
Sbjct: 242 GVNY---GAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGET 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF +ID M +L+RPSLY A+ +I V E + +DVVGPVCE+ DFLGKER L
Sbjct: 299 RNFALIDAGMNDLLRPSLYGAWMNIIEVDSRTAH-EKALYDVVGPVCETGDFLGKERTLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G+ L V AGAY +M+S YN + R E V S +I
Sbjct: 358 IAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGTQSFLI 399
>gi|23015819|ref|ZP_00055585.1| COG0019: Diaminopimelate decarboxylase [Magnetospirillum
magnetotacticum MS-1]
Length = 424
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 222/393 (56%), Gaps = 7/393 (1%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANN 128
++G L+ EDV + + V PFY YS + R+ + +AL+ GL++ I +A KAN
Sbjct: 7 SNGTLFAEDVAIARIAREV-GTPFYCYSTATLERHYTVFAEALKSAGLDATICFAAKANP 65
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N ++ +LG GA +VS ELR AL AG + +F+G GK +L A +G+F +N
Sbjct: 66 NMAVIRTFAQLGAGADVVSEGELRQALAAGVPAARIVFSGVGKTRHELEFAVAKGIFQIN 125
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + + G + + +R+NPDVD H + TG K +KFGI + +
Sbjct: 126 VESEPELEMLSEVAAARGLVMPIAIRVNPDVDAGTHAKITTGKKENKFGIEWTRAREVYA 185
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
KA P ++ V CH+GS +T++D FR+A + + + + +RA G ++ L++GGGLG+
Sbjct: 186 RAKALPG-VEPVSIACHIGSQLTELDPFREAFLRVRDLVAMLRADGIDIRRLDLGGGLGV 244
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P+P+ + ++ + I EPGR L+ N LV+ + VK T+ F
Sbjct: 245 PY--DDETPPEPKAYAEVIKASLGDLGCRFIFEPGRLLVGNAGILVSSIIRVKEGSTRTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M +L RPSLYDAY I V+ A +++ DVVGPVCE+ D ++R LP
Sbjct: 303 LIVDAAMNDLARPSLYDAYHSIFPVAEPKAGAPLAEVDVVGPVCETGDTFARQRRLPPMR 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G L + AGAY +M+STYN + PE V+
Sbjct: 363 AGDLLALGTAGAYGAAMSSTYNTRPLIPEVLVK 395
>gi|323143200|ref|ZP_08077896.1| diaminopimelate decarboxylase [Succinatimonas hippei YIT 12066]
gi|322417041|gb|EFY07679.1| hypothetical protein HMPREF9444_00510 [Succinatimonas hippei YIT
12066]
Length = 416
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 229/394 (58%), Gaps = 7/394 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ V D+ + P Y+YSK + R++ A+K+AL +I YA+KAN++ IL
Sbjct: 11 LYAEDLAVTDLADQY-GSPLYIYSKATLVRHMNAFKEALAKKRHLICYAVKANSSLSILA 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ LG G +VS ELR ++AG DP K +F+G GK ++ A ++G+ N++S +
Sbjct: 70 LMASLGAGFDVVSEGELRRVIKAGGDPKKVVFSGVGKTAHEIAFALEQGIDCFNIESVPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
+ I ++ GKK V +R+NP+VD + HP ++TG K++KFGI ++ + A P
Sbjct: 130 INAISSVAKSLGKKARVSVRVNPNVDAKTHPSISTGLKSNKFGIAYDEALAVYRQMAADP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T +A +++ ++ G ++D+++IGGGLG+ Y
Sbjct: 190 N-LEICGIDCHIGSQMTSGAPILEATERLLDLYKELTECGIKIDHIDIGGGLGVTY--GD 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P + V + ++++ +EPGR+++AN LV +K KNF ++D
Sbjct: 247 ETPPSPYEYMSAVINRLKDLDISIYVEPGRAMVANAGILVTKALYLKKGSVKNFCIVDAG 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY+++ +I V QDA++ +DVVGPVCES DFLGKER+L G L
Sbjct: 307 MNDLIRPALYNSWMNIVEVKK-HQDAKVDLYDVVGPVCESDDFLGKERKLAVS-AGEYLA 364
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
V AGAY SM+S YN ++ E V S +I
Sbjct: 365 VRGAGAYGSSMSSNYNSRLLCAEILVDKNKSYVI 398
>gi|163844005|ref|YP_001628409.1| diaminopimelate decarboxylase [Brucella suis ATCC 23445]
gi|163674728|gb|ABY38839.1| diaminopimelate decarboxylase [Brucella suis ATCC 23445]
Length = 421
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRRIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|422648822|ref|ZP_16711939.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330962353|gb|EGH62613.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 415
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL+G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSGIAERF-GTPTYVYSRAHIEAQYRAYADALDGMAHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEARAYDIVGPICETGDFLAKDRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|319406349|emb|CBI79988.1| Diaminopimelate decarboxylase [Bartonella sp. AR 15-3]
Length = 424
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 223/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ ED+ + + + V PFY YS + N E Y+QA + + +I YA+
Sbjct: 2 HFFSYY-QGELHAEDLSLSMLAQEV-GTPFYCYSARTLITNFENYQQAFQNMPYLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL L + G GA +VS ELR AL AG + +++G GK ++++ A + +
Sbjct: 60 KANSNQAILRLLAQSGAGADVVSEGELRRALAAGIPTHRIVYSGVGKTVKEIDFALTQNI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + + LRINPDVD + H + TG +KFGI +
Sbjct: 120 HCFNVESEPELEQLSARAVALSTTARISLRINPDVDAKTHKKITTGKSENKFGIPLSSAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L + G H+GS I + F DA ++ +++ ++ G+ + +++IGG
Sbjct: 180 EVYKKAAQLPG-LYVCGVDIHIGSQICDLTPFEDAFLITADFVRQLWNDGYAITHVDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y +P P + VR+ + +N+I+EPGRS++ LV V +K
Sbjct: 239 GLGISYGSEHYSVPSPFDYAALVRKHIAPLGINIILEPGRSIVGEAGILVTSVIHLKRGK 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF+++D +M + IRP+LY+A+Q++ LV P D + D+VGPVCE+ D+LG R L
Sbjct: 299 ERNFVIVDAAMNDFIRPTLYEAWQNVLLVKEKPIDTLLINADIVGPVCETGDYLGLNRSL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G LV+ AGAY M++TYN ++ PE V+ +I P
Sbjct: 359 PILSTGDLLVITGAGAYGAVMSNTYNSRLLIPEVLVQDAHYAVIRP 404
>gi|33594517|ref|NP_882161.1| diaminopimelate decarboxylase [Bordetella pertussis Tohama I]
gi|384205814|ref|YP_005591553.1| diaminopimelate decarboxylase [Bordetella pertussis CS]
gi|33564593|emb|CAE43910.1| diaminopimelate decarboxylase [Bordetella pertussis Tohama I]
gi|332383928|gb|AEE68775.1| diaminopimelate decarboxylase [Bordetella pertussis CS]
Length = 429
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 226/392 (57%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + D + P Y+YS+ + E Y+ A+ ++ + +K N+N
Sbjct: 20 NGVLHAEDVPL-DSLAAQLGTPLYVYSRAALRSAWETYRDAIGERPVLVCFGMKTNSNLA 78
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ +LG G +VSG EL L G DP K +F+G GK ++ A + V NV+S
Sbjct: 79 VLKEFARLGAGFDIVSGGELARVLAVGGDPAKVVFSGVGKQAWEMRAALEADVKCFNVES 138
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G++ V LR+NPDVD Q HPY++TG K +KFGI E
Sbjct: 139 EAELERLSDVAVSMGRRARVSLRVNPDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAA 198
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++VG CH+GS +T + + DA +++ I+++ G + +L++GGGLGI Y
Sbjct: 199 RLPG-VEVVGVDCHIGSQLTDISPYFDALEKLLDLIEQLAENGIAIKHLDLGGGLGIRY- 256
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T + P P+ L+D V E + +R +L++++EPGRSL N L+ V +K +NF
Sbjct: 257 -TDEIPPSPKALLDRVFERINARGLGHLHIVLEPGRSLAGNAGVLLTTVQYLKHAEARNF 315
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY+AY ++ V+P D I ++DVVGPVCESAD+L + R L
Sbjct: 316 AIVDAAMNDLLRPALYEAYHGVQPVTPR-ADKRI-EYDVVGPVCESADWLARGRALAI-Q 372
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M MAS YN ++R E V
Sbjct: 373 AGDVLAVESAGAYSMVMASNYNTRVRAAEVMV 404
>gi|386826590|ref|ZP_10113697.1| diaminopimelate decarboxylase [Beggiatoa alba B18LD]
gi|386427474|gb|EIJ41302.1| diaminopimelate decarboxylase [Beggiatoa alba B18LD]
Length = 416
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/403 (36%), Positives = 227/403 (56%), Gaps = 8/403 (1%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
CF K +G L+ EDV + D+ + P Y+YS+ I + + AL +I YA+K
Sbjct: 3 CFQYK-NGVLHAEDVNLVDIAQQY-GTPCYVYSRTAIEQQWHLFNNALANYPHLICYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN++ IL L +LG G +VSG EL L+AG K +F+G GK + ++ A + G+F
Sbjct: 61 ANSSLAILNVLAQLGAGFDIVSGGELERVLQAGGQANKIVFSGVGKTVAEIRRALEVGIF 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+SE +L I + GK+ + LR+NPDVD Q HPY++TG K +KFGI + L
Sbjct: 121 CFNVESEAELLRINEIAGQIGKRAPISLRVNPDVDAQTHPYISTGMKQNKFGI-DITLAP 179
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ A+ A + + G CH+GS +T + F DAA ++ ++ ++ QG + +++ GGG
Sbjct: 180 QVYAMAAQLPHIDITGVDCHIGSQLTTITPFIDAAQRVMQLVEGLKQQGITLKHIDFGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + ++ +V + L+ EPGR ++AN LV V +K
Sbjct: 240 LGVQY--NAETPPSVADYAQALQSVVGNSPYQLVFEPGRVIVANAGVLVTKVEYLKQTPD 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F +ID +M +LIRP+LY A+Q + ++P Q + +D+VGP+CE+ DFL K+REL
Sbjct: 298 KHFAIIDAAMNDLIRPALYSAWQAVSPIAPH-QQGTLQTYDIVGPICETGDFLAKDREL- 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L + AGAY +M+S YN + R E V S II
Sbjct: 356 ILQAGDLLAIRSAGAYGFAMSSNYNTRPRVAEIMVYGRESRII 398
>gi|254226601|ref|ZP_04920182.1| diaminopimelate decarboxylase [Vibrio cholerae V51]
gi|125620873|gb|EAZ49226.1| diaminopimelate decarboxylase [Vibrio cholerae V51]
Length = 417
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGEYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + G K + LRINPDVD Q HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELQRLNKVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGITFDRAAQV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 391
>gi|306842881|ref|ZP_07475518.1| diaminopimelate decarboxylase [Brucella sp. BO2]
gi|306286968|gb|EFM58485.1| diaminopimelate decarboxylase [Brucella sp. BO2]
Length = 421
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAEIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIVPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|104784267|ref|YP_610765.1| diaminopimelate decarboxylase [Pseudomonas entomophila L48]
gi|95113254|emb|CAK17982.1| diaminopimelate decarboxylase [Pseudomonas entomophila L48]
Length = 415
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + V E P Y+YS+ I +Y AL+G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAVAERF-GTPTYVYSRAHIEAQYRSYTDALQGVEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNLLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 SDELERLQVVAAEMGKTAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L +VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LDVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PVLADYIQAIRERVGDRELALVFEPGRYIVANGGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P++ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSAVK--PREGEGRAYDLVGPICETGDFLGKDRVLDLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|297539787|ref|YP_003675556.1| diaminopimelate decarboxylase [Methylotenera versatilis 301]
gi|297259134|gb|ADI30979.1| diaminopimelate decarboxylase [Methylotenera versatilis 301]
Length = 416
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YSK +T+ E++ + + ++ +A+KAN + IL KLG G +VSG EL
Sbjct: 28 PCYVYSKSALTQAFESFSAGFKDCDHLVCFAVKANPSLAILNLFAKLGAGFDIVSGGELA 87
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG DP K +F+G GK ++ A +F NV+S +L+ + + GK +
Sbjct: 88 RVLAAGGDPKKIVFSGVGKTEAEMQAALNADIFCFNVESASELQRLNDVASFMGKVAPIS 147
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
LR+NP+VD + HPY++TG KN+KFG+ E L +L A K + + + G CH+GS IT
Sbjct: 148 LRVNPNVDAKTHPYISTGLKNNKFGVAYEDALDIYLQAAKM--SNIAIHGVDCHIGSQIT 205
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
++ F DA ++ +D + G + +++ GGG+GI Y + P+ +R +
Sbjct: 206 ELSPFLDAFDRVLALVDALAENGIVIQHIDAGGGIGICY--SDETPPEFTVFATAMRAKL 263
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
SRN+ L+ EPGR+L+ N L+ V +K +KNF ++D +M +L+RP+LYDAY I+
Sbjct: 264 GSRNVKLVFEPGRALVGNAGVLLTKVEYLKHTESKNFAIVDAAMNDLMRPALYDAYHDIK 323
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
V P D E +++VGPVCES DFLG +R L + G L + AGAY MSM+S YN
Sbjct: 324 AVQPRQDDTEALTYEIVGPVCESGDFLGHDRTLALVE-GDILAIMSAGAYGMSMSSNYNT 382
Query: 451 KMRPPEYWV 459
+ R E V
Sbjct: 383 RPRAAEVMV 391
>gi|319791909|ref|YP_004153549.1| diaminopimelate decarboxylase [Variovorax paradoxus EPS]
gi|315594372|gb|ADU35438.1| diaminopimelate decarboxylase [Variovorax paradoxus EPS]
Length = 422
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 230/405 (56%), Gaps = 21/405 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E + + D + P ++YSK + + AY++ EG +++I YA+KAN++
Sbjct: 15 DGALHVEGLAL-DALAREHGTPLFVYSKQWMLDALAAYQRGFEGRDALICYAMKANSSLG 73
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L + GCG +VSG EL L G DP K IF+G GK ++ A G+ NV+S
Sbjct: 74 VLRVFAEAGCGFDIVSGGELARVLAVGADPKKIIFSGVGKTRAEMRQALAAGIACFNVES 133
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G + + +RINP+VDP+ HPY++TG K +KFGI +++ AV+
Sbjct: 134 EAELDVLNEVALAEGGRAPISIRINPNVDPKTHPYISTGLKGNKFGIAHDR------AVE 187
Query: 251 AHPNE-----LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ + L++VG CH+GS IT+ + DA +++ ++ I A G + +L+ GGGL
Sbjct: 188 AYRHAARLPGLEVVGIDCHIGSQITEASPYLDACDRILDLVEAIEAAGVPIHHLDFGGGL 247
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTN 362
GIDY G V PK +L + + +R L+IEPGRSL+ N V V K
Sbjct: 248 GIDY--NGEVPPKADDLWQQLLAKLDARGFGARKLVIEPGRSLVGNAGVCVTEVLYTKPG 305
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF ++D +M +L RP++Y A+Q I V + E +DVVGPVCES D++G++R
Sbjct: 306 EDKNFCIVDAAMNDLPRPAMYQAFQKI--VPLRIRTGEAPTYDVVGPVCESGDWIGRDRA 363
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L G L V AGAYCMSM+S YN + R E V + +I
Sbjct: 364 LNVL-AGDLLAVLSAGAYCMSMSSNYNTRPRAAEVLVSGQSATLI 407
>gi|289207307|ref|YP_003459373.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
gi|288942938|gb|ADC70637.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
Length = 434
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 223/388 (57%), Gaps = 11/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + + + V P Y+YS+ + R+ A+ +AL G + +A+KAN+ +L
Sbjct: 11 LHAEGVALDHLAQLV-GTPAYVYSRATLERHYRAFSEALIGTPHQVCFAVKANSALGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL LRAG DP K +F+G GK ++ A + G+ NV+S +
Sbjct: 70 VLARLGAGFDIVSGGELERVLRAGGDPAKVVFSGVGKTAAEMRRALKVGIHCFNVESAPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + G V +R+NPDVD + HPY+ATG + +KFG+ E+ V+
Sbjct: 130 LERLESIAAEMGVTAPVSIRVNPDVDAETHPYIATGLRENKFGVAIEEAPALYARVR-DS 188
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L+ G H+GS +T++D F DA ++ +D++ A G E++++++GGGLG+ Y
Sbjct: 189 QHLEATGVDFHIGSQLTRIDPFTDALKRVLTLVDQLAADGIELEHIDVGGGLGVRYRDE- 247
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P+P +R+++ R+L +++EPGR++ AN + V +K +F ++DG+
Sbjct: 248 -TPPEPDAWASALRKVMGERSLKVLLEPGRAIAANAGVFLTRVEYLKHTEAHDFAIVDGA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISK--FDVVGPVCESADFLGKERELPTPDRGAG 431
M +L+RP+LY A+Q I P Q E + +D+VGPVCE+ DFLG+EREL G
Sbjct: 307 MNDLLRPALYGAWQEI---IPVVQRRETAARTYDIVGPVCETGDFLGRERELALA-AGDV 362
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MA YN + RPPE V
Sbjct: 363 LAVRSAGAYGYVMAGNYNSRPRPPEIMV 390
>gi|411011016|ref|ZP_11387345.1| diaminopimelate decarboxylase [Aeromonas aquariorum AAK1]
Length = 416
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 237/404 (58%), Gaps = 11/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEHTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K +
Sbjct: 242 GVNY---GAEQPPHPSEYAEALKQRLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF +ID M +L+RPSLY A+ + IE+ S A + + +DVVGPVCE+ DFLGKER L
Sbjct: 299 RNFALIDAGMNDLLRPSLYGAWMNIIEVDSRASHEQAV--YDVVGPVCETGDFLGKERTL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G+ L V AGAY +M+S YN + R E V S +I
Sbjct: 357 AIAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGAQSFLI 399
>gi|254508819|ref|ZP_05120930.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 16]
gi|219548276|gb|EED25290.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 16]
Length = 417
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 233/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + D+ + P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVALSDLAQQY-GTPLYVYSRATLERHWNAFDKSVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L ++G G +VSG EL + AG D +K +F+G GK +++ A + G+
Sbjct: 63 NSNLGVLNALARIGSGFDIVSGGELERVIAAGGDASKVVFSGVGKTEQEMQRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGQLGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID ++ QG ++ +L++GGGL
Sbjct: 183 YQFAASLEN-LDVKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKEQGIDIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--MPPEPSDYAKALLSRLDNHKHLELIFEPGRAIAANAGILLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V AP++ E +++D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVAPREGEATEYDLVGPICETGDFLGKDRRLV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN ++R E V
Sbjct: 358 LEENDL-LAVRSAGAYGFVMSSNYNTRVRAAEVMV 391
>gi|306843420|ref|ZP_07476021.1| diaminopimelate decarboxylase [Brucella inopinata BO1]
gi|306276111|gb|EFM57811.1| diaminopimelate decarboxylase [Brucella inopinata BO1]
Length = 421
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSEGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAEIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIVPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|319404864|emb|CBI78465.1| Diaminopimelate decarboxylase [Bartonella rochalimae ATCC BAA-1498]
Length = 424
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/406 (35%), Positives = 223/406 (54%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ ED+ + + + V PFY YS + N E Y+QA + + +I YA+
Sbjct: 2 HFFSYY-QGELHAEDLSLSILAQKV-GTPFYCYSARTLITNFENYQQAFQDMPYLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL L + G GA +VS ELR AL AG + +++G GK ++++ A + +
Sbjct: 60 KANSNQAILRLLARSGAGADVVSEGELRRALAAGIPAHRIVYSGVGKTMKEIDFALTQNI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + + LRINPDVD + H + TG +KFGI +
Sbjct: 120 HCFNVESEPELEQLSARAVALSTTARISLRINPDVDAKTHKKITTGKSENKFGIPLSSAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L + G H+GS I + F DA ++ ++I ++ G+ + +++IGG
Sbjct: 180 EVYKKAAQLPG-LYICGVDIHIGSQICNLKPFEDAFLITADFICQLWNDGYTITHVDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y +P P VR+ + +N+I+EPGRS++ LV V +K
Sbjct: 239 GLGIPYGSEHHSVPSPFEYAALVRKHIAPLGINIILEPGRSIVGEAGILVTSVIHLKRGK 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF+++D +M + IRP+LY+A+Q++ LV P D + D+VGPVCE+ D+LG R L
Sbjct: 299 ERNFVIVDAAMNDFIRPTLYEAWQNVLLVKEKPIDTPLINADIVGPVCETGDYLGLNRSL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+G LVV AGAY M++TYN ++ PE V+ + +I P
Sbjct: 359 ALLSQGDLLVVTGAGAYGAVMSNTYNSRLLIPEVLVQDMRYAVIRP 404
>gi|94265420|ref|ZP_01289172.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|94266455|ref|ZP_01290148.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|93452933|gb|EAT03438.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|93454077|gb|EAT04412.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
Length = 416
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 223/396 (56%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K DG L+ E+V V ++ V PFYLYS + R+ A+ A GL+ + +A+
Sbjct: 2 HHFEYK-DGVLHAEEVAVPEIAAAV-GTPFYLYSAATLRRHFTAFDGAFAGLDHLSCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KA++N IL +LG GA +VSG EL AL+AG P + +++G GK ++ A G+
Sbjct: 60 KASSNIAILRLFARLGGGADIVSGGELFRALKAGIAPERIVYSGVGKTRAEIRQALVAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ N++S +L I + G+ V R+NPDVDPQ H Y++TG +KFGI E+
Sbjct: 120 LMFNLESAQELTAIQQCAAELGQTARVSFRVNPDVDPQTHAYISTGLAENKFGIAIEEAL 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ N +++VG CH+GS +T+V F D + ++ ++ G + YL++GG
Sbjct: 180 AVYKEARQMAN-VEIVGLSCHIGSQLTQVSPFVDTVDKLKKFMAELNGAGINIRYLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI+Y G P+P +R+ + LI+EPGR ++ N LV V K+ G
Sbjct: 239 GLGINY--QGENPPEPAEYGMALRQALGDLPCTLILEPGRVIVGNAGILVTRVLFTKS-G 295
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF+V+D M +L RPSLYDAY I+ V+ +D ++ DVVGP+CE+ DFL + RE+
Sbjct: 296 RKNFVVVDAGMNDLARPSLYDAYHAIQPVT-RREDGQMVA-DVVGPICETGDFLARGREI 353
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +MAS YN + R PE V
Sbjct: 354 ARAVPDDLLAVMSAGAYGFTMASNYNSRPRVPEVLV 389
>gi|423199354|ref|ZP_17185937.1| diaminopimelate decarboxylase [Aeromonas hydrophila SSU]
gi|404629349|gb|EKB26110.1| diaminopimelate decarboxylase [Aeromonas hydrophila SSU]
Length = 416
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/404 (38%), Positives = 237/404 (58%), Gaps = 11/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEHTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K +
Sbjct: 242 GVNY---GAEQPPHPSEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF +ID M +L+RPSLY A+ + IE+ S A + + +DVVGPVCE+ DFLGKER L
Sbjct: 299 RNFALIDAGMNDLLRPSLYGAWMNIIEVDSRASHEQAV--YDVVGPVCETGDFLGKERTL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G+ L V AGAY +M+S YN + R E V S +I
Sbjct: 357 AIAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGAQSFLI 399
>gi|15640156|ref|NP_229783.1| diaminopimelate decarboxylase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587729|ref|ZP_01677490.1| diaminopimelate decarboxylase [Vibrio cholerae 2740-80]
gi|121728316|ref|ZP_01681347.1| diaminopimelate decarboxylase [Vibrio cholerae V52]
gi|147674363|ref|YP_001218294.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|153214838|ref|ZP_01949646.1| diaminopimelate decarboxylase [Vibrio cholerae 1587]
gi|153803072|ref|ZP_01957658.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-3]
gi|153818954|ref|ZP_01971621.1| diaminopimelate decarboxylase [Vibrio cholerae NCTC 8457]
gi|153822335|ref|ZP_01975002.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|153826290|ref|ZP_01978957.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-2]
gi|153830026|ref|ZP_01982693.1| diaminopimelate decarboxylase [Vibrio cholerae 623-39]
gi|227080361|ref|YP_002808912.1| diaminopimelate decarboxylase [Vibrio cholerae M66-2]
gi|227116423|ref|YP_002818319.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|229508403|ref|ZP_04397907.1| diaminopimelate decarboxylase [Vibrio cholerae BX 330286]
gi|229508916|ref|ZP_04398406.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|229515840|ref|ZP_04405298.1| diaminopimelate decarboxylase [Vibrio cholerae TMA 21]
gi|229517030|ref|ZP_04406476.1| diaminopimelate decarboxylase [Vibrio cholerae RC9]
gi|229520083|ref|ZP_04409511.1| diaminopimelate decarboxylase [Vibrio cholerae TM 11079-80]
gi|229525021|ref|ZP_04414426.1| diaminopimelate decarboxylase [Vibrio cholerae bv. albensis VL426]
gi|229527133|ref|ZP_04416527.1| diaminopimelate decarboxylase [Vibrio cholerae 12129(1)]
gi|229606676|ref|YP_002877324.1| diaminopimelate decarboxylase [Vibrio cholerae MJ-1236]
gi|254291934|ref|ZP_04962715.1| diaminopimelate decarboxylase [Vibrio cholerae AM-19226]
gi|254851509|ref|ZP_05240859.1| diaminopimelate decarboxylase [Vibrio cholerae MO10]
gi|255743922|ref|ZP_05417877.1| diaminopimelate decarboxylase [Vibrio cholera CIRS 101]
gi|262151161|ref|ZP_06028300.1| diaminopimelate decarboxylase [Vibrio cholerae INDRE 91/1]
gi|262167030|ref|ZP_06034747.1| diaminopimelate decarboxylase [Vibrio cholerae RC27]
gi|297581834|ref|ZP_06943755.1| diaminopimelate decarboxylase [Vibrio cholerae RC385]
gi|298501107|ref|ZP_07010907.1| diaminopimelate decarboxylase [Vibrio cholerae MAK 757]
gi|360036654|ref|YP_004938417.1| diaminopimelate decarboxylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740020|ref|YP_005331989.1| diaminopimelate decarboxylase [Vibrio cholerae IEC224]
gi|417811205|ref|ZP_12457872.1| diaminopimelate decarboxylase [Vibrio cholerae HC-49A2]
gi|417814959|ref|ZP_12461601.1| diaminopimelate decarboxylase [Vibrio cholerae HCUF01]
gi|417818724|ref|ZP_12465345.1| diaminopimelate decarboxylase [Vibrio cholerae HE39]
gi|417822288|ref|ZP_12468889.1| diaminopimelate decarboxylase [Vibrio cholerae HE48]
gi|418330834|ref|ZP_12941796.1| diaminopimelate decarboxylase [Vibrio cholerae HC-06A1]
gi|418335800|ref|ZP_12944704.1| diaminopimelate decarboxylase [Vibrio cholerae HC-23A1]
gi|418342369|ref|ZP_12949185.1| diaminopimelate decarboxylase [Vibrio cholerae HC-28A1]
gi|418347543|ref|ZP_12952284.1| diaminopimelate decarboxylase [Vibrio cholerae HC-43A1]
gi|418353093|ref|ZP_12955821.1| diaminopimelate decarboxylase [Vibrio cholerae HC-61A1]
gi|419824594|ref|ZP_14348106.1| diaminopimelate decarboxylase [Vibrio cholerae CP1033(6)]
gi|419827824|ref|ZP_14351317.1| diaminopimelate decarboxylase [Vibrio cholerae HC-1A2]
gi|419831486|ref|ZP_14354956.1| diaminopimelate decarboxylase [Vibrio cholerae HC-61A2]
gi|419835062|ref|ZP_14358511.1| diaminopimelate decarboxylase [Vibrio cholerae HC-46B1]
gi|421315382|ref|ZP_15765957.1| diaminopimelate decarboxylase [Vibrio cholerae CP1032(5)]
gi|421318921|ref|ZP_15769484.1| diaminopimelate decarboxylase [Vibrio cholerae CP1038(11)]
gi|421322975|ref|ZP_15773509.1| diaminopimelate decarboxylase [Vibrio cholerae CP1041(14)]
gi|421326427|ref|ZP_15776947.1| diaminopimelate decarboxylase [Vibrio cholerae CP1042(15)]
gi|421330352|ref|ZP_15780839.1| diaminopimelate decarboxylase [Vibrio cholerae CP1046(19)]
gi|421337477|ref|ZP_15787936.1| diaminopimelate decarboxylase [Vibrio cholerae CP1048(21)]
gi|421337859|ref|ZP_15788302.1| diaminopimelate decarboxylase [Vibrio cholerae HC-20A2]
gi|421341684|ref|ZP_15792094.1| diaminopimelate decarboxylase [Vibrio cholerae HC-43B1]
gi|421348779|ref|ZP_15799154.1| diaminopimelate decarboxylase [Vibrio cholerae HC-46A1]
gi|421349001|ref|ZP_15799371.1| diaminopimelate decarboxylase [Vibrio cholerae HE-25]
gi|421352890|ref|ZP_15803229.1| diaminopimelate decarboxylase [Vibrio cholerae HE-45]
gi|422305539|ref|ZP_16392740.1| diaminopimelate decarboxylase [Vibrio cholerae CP1035(8)]
gi|422890155|ref|ZP_16932603.1| diaminopimelate decarboxylase [Vibrio cholerae HC-40A1]
gi|422900940|ref|ZP_16936353.1| diaminopimelate decarboxylase [Vibrio cholerae HC-48A1]
gi|422905123|ref|ZP_16940000.1| diaminopimelate decarboxylase [Vibrio cholerae HC-70A1]
gi|422908668|ref|ZP_16943346.1| diaminopimelate decarboxylase [Vibrio cholerae HE-09]
gi|422911872|ref|ZP_16946412.1| diaminopimelate decarboxylase [Vibrio cholerae HFU-02]
gi|422915856|ref|ZP_16950213.1| diaminopimelate decarboxylase [Vibrio cholerae HC-02A1]
gi|422921377|ref|ZP_16954616.1| diaminopimelate decarboxylase [Vibrio cholerae BJG-01]
gi|422924336|ref|ZP_16957397.1| diaminopimelate decarboxylase [Vibrio cholerae HC-38A1]
gi|423143399|ref|ZP_17131028.1| diaminopimelate decarboxylase [Vibrio cholerae HC-19A1]
gi|423148381|ref|ZP_17135753.1| diaminopimelate decarboxylase [Vibrio cholerae HC-21A1]
gi|423152167|ref|ZP_17139392.1| diaminopimelate decarboxylase [Vibrio cholerae HC-22A1]
gi|423154960|ref|ZP_17142106.1| diaminopimelate decarboxylase [Vibrio cholerae HC-32A1]
gi|423158825|ref|ZP_17145806.1| diaminopimelate decarboxylase [Vibrio cholerae HC-33A2]
gi|423163486|ref|ZP_17150297.1| diaminopimelate decarboxylase [Vibrio cholerae HC-48B2]
gi|423729497|ref|ZP_17702835.1| diaminopimelate decarboxylase [Vibrio cholerae HC-17A1]
gi|423733408|ref|ZP_17706642.1| diaminopimelate decarboxylase [Vibrio cholerae HC-41B1]
gi|423745278|ref|ZP_17711014.1| diaminopimelate decarboxylase [Vibrio cholerae HC-50A2]
gi|423810764|ref|ZP_17714806.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55C2]
gi|423845623|ref|ZP_17718579.1| diaminopimelate decarboxylase [Vibrio cholerae HC-59A1]
gi|423877835|ref|ZP_17722208.1| diaminopimelate decarboxylase [Vibrio cholerae HC-60A1]
gi|423889552|ref|ZP_17725052.1| diaminopimelate decarboxylase [Vibrio cholerae HC-62A1]
gi|423922966|ref|ZP_17729665.1| diaminopimelate decarboxylase [Vibrio cholerae HC-77A1]
gi|423943404|ref|ZP_17733065.1| diaminopimelate decarboxylase [Vibrio cholerae HE-40]
gi|423973258|ref|ZP_17736610.1| diaminopimelate decarboxylase [Vibrio cholerae HE-46]
gi|423996027|ref|ZP_17739547.1| diaminopimelate decarboxylase [Vibrio cholerae HC-02C1]
gi|424000672|ref|ZP_17743776.1| diaminopimelate decarboxylase [Vibrio cholerae HC-17A2]
gi|424004834|ref|ZP_17747833.1| diaminopimelate decarboxylase [Vibrio cholerae HC-37A1]
gi|424007705|ref|ZP_17750664.1| diaminopimelate decarboxylase [Vibrio cholerae HC-44C1]
gi|424014940|ref|ZP_17754831.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55B2]
gi|424018084|ref|ZP_17757897.1| diaminopimelate decarboxylase [Vibrio cholerae HC-59B1]
gi|424022631|ref|ZP_17762308.1| diaminopimelate decarboxylase [Vibrio cholerae HC-62B1]
gi|424025650|ref|ZP_17765281.1| diaminopimelate decarboxylase [Vibrio cholerae HC-69A1]
gi|424585022|ref|ZP_18024630.1| diaminopimelate decarboxylase [Vibrio cholerae CP1030(3)]
gi|424589395|ref|ZP_18028854.1| diaminopimelate decarboxylase [Vibrio cholerae CP1037(10)]
gi|424593649|ref|ZP_18033004.1| diaminopimelate decarboxylase [Vibrio cholerae CP1040(13)]
gi|424597579|ref|ZP_18036792.1| diaminopimelate decarboxylase [Vibrio Cholerae CP1044(17)]
gi|424600353|ref|ZP_18039523.1| diaminopimelate decarboxylase [Vibrio cholerae CP1047(20)]
gi|424605255|ref|ZP_18044235.1| diaminopimelate decarboxylase [Vibrio cholerae CP1050(23)]
gi|424608978|ref|ZP_18047851.1| diaminopimelate decarboxylase [Vibrio cholerae HC-39A1]
gi|424611890|ref|ZP_18050712.1| diaminopimelate decarboxylase [Vibrio cholerae HC-41A1]
gi|424615775|ref|ZP_18054481.1| diaminopimelate decarboxylase [Vibrio cholerae HC-42A1]
gi|424620529|ref|ZP_18059069.1| diaminopimelate decarboxylase [Vibrio cholerae HC-47A1]
gi|424623462|ref|ZP_18061950.1| diaminopimelate decarboxylase [Vibrio cholerae HC-50A1]
gi|424628033|ref|ZP_18066356.1| diaminopimelate decarboxylase [Vibrio cholerae HC-51A1]
gi|424631982|ref|ZP_18070114.1| diaminopimelate decarboxylase [Vibrio cholerae HC-52A1]
gi|424635069|ref|ZP_18073103.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55A1]
gi|424638895|ref|ZP_18076803.1| diaminopimelate decarboxylase [Vibrio cholerae HC-56A1]
gi|424643346|ref|ZP_18081116.1| diaminopimelate decarboxylase [Vibrio cholerae HC-56A2]
gi|424647147|ref|ZP_18084838.1| diaminopimelate decarboxylase [Vibrio cholerae HC-57A1]
gi|424651276|ref|ZP_18088813.1| diaminopimelate decarboxylase [Vibrio cholerae HC-57A2]
gi|424655229|ref|ZP_18092542.1| diaminopimelate decarboxylase [Vibrio cholerae HC-81A2]
gi|424658029|ref|ZP_18095298.1| diaminopimelate decarboxylase [Vibrio cholerae HE-16]
gi|429888413|ref|ZP_19369894.1| Diaminopimelate decarboxylase [Vibrio cholerae PS15]
gi|440711957|ref|ZP_20892584.1| diaminopimelate decarboxylase [Vibrio cholerae 4260B]
gi|443502181|ref|ZP_21069185.1| diaminopimelate decarboxylase [Vibrio cholerae HC-64A1]
gi|443506080|ref|ZP_21072891.1| diaminopimelate decarboxylase [Vibrio cholerae HC-65A1]
gi|443509915|ref|ZP_21076601.1| diaminopimelate decarboxylase [Vibrio cholerae HC-67A1]
gi|443513759|ref|ZP_21080316.1| diaminopimelate decarboxylase [Vibrio cholerae HC-68A1]
gi|443517563|ref|ZP_21084002.1| diaminopimelate decarboxylase [Vibrio cholerae HC-71A1]
gi|443522152|ref|ZP_21088414.1| diaminopimelate decarboxylase [Vibrio cholerae HC-72A2]
gi|443526021|ref|ZP_21092124.1| diaminopimelate decarboxylase [Vibrio cholerae HC-78A1]
gi|443529085|ref|ZP_21095107.1| diaminopimelate decarboxylase [Vibrio cholerae HC-7A1]
gi|443533822|ref|ZP_21099758.1| diaminopimelate decarboxylase [Vibrio cholerae HC-80A1]
gi|443536643|ref|ZP_21102503.1| diaminopimelate decarboxylase [Vibrio cholerae HC-81A1]
gi|449054793|ref|ZP_21733461.1| Diaminopimelate decarboxylase [Vibrio cholerae O1 str. Inaba G4222]
gi|13124077|sp|Q9KVL7.1|DCDA_VIBCH RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|9654525|gb|AAF93302.1| diaminopimelate decarboxylase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548028|gb|EAX58106.1| diaminopimelate decarboxylase [Vibrio cholerae 2740-80]
gi|121629446|gb|EAX61875.1| diaminopimelate decarboxylase [Vibrio cholerae V52]
gi|124115081|gb|EAY33901.1| diaminopimelate decarboxylase [Vibrio cholerae 1587]
gi|124121391|gb|EAY40134.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-3]
gi|126510516|gb|EAZ73110.1| diaminopimelate decarboxylase [Vibrio cholerae NCTC 8457]
gi|126520161|gb|EAZ77384.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|146316246|gb|ABQ20785.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|148874511|gb|EDL72646.1| diaminopimelate decarboxylase [Vibrio cholerae 623-39]
gi|149739958|gb|EDM54137.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-2]
gi|150422144|gb|EDN14110.1| diaminopimelate decarboxylase [Vibrio cholerae AM-19226]
gi|227008249|gb|ACP04461.1| diaminopimelate decarboxylase [Vibrio cholerae M66-2]
gi|227011873|gb|ACP08083.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|229335364|gb|EEO00847.1| diaminopimelate decarboxylase [Vibrio cholerae 12129(1)]
gi|229338602|gb|EEO03619.1| diaminopimelate decarboxylase [Vibrio cholerae bv. albensis VL426]
gi|229342871|gb|EEO07861.1| diaminopimelate decarboxylase [Vibrio cholerae TM 11079-80]
gi|229346093|gb|EEO11065.1| diaminopimelate decarboxylase [Vibrio cholerae RC9]
gi|229347103|gb|EEO12064.1| diaminopimelate decarboxylase [Vibrio cholerae TMA 21]
gi|229354033|gb|EEO18966.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|229354676|gb|EEO19598.1| diaminopimelate decarboxylase [Vibrio cholerae BX 330286]
gi|229369331|gb|ACQ59754.1| diaminopimelate decarboxylase [Vibrio cholerae MJ-1236]
gi|254847214|gb|EET25628.1| diaminopimelate decarboxylase [Vibrio cholerae MO10]
gi|255738405|gb|EET93795.1| diaminopimelate decarboxylase [Vibrio cholera CIRS 101]
gi|262024548|gb|EEY43232.1| diaminopimelate decarboxylase [Vibrio cholerae RC27]
gi|262031055|gb|EEY49680.1| diaminopimelate decarboxylase [Vibrio cholerae INDRE 91/1]
gi|297533928|gb|EFH72768.1| diaminopimelate decarboxylase [Vibrio cholerae RC385]
gi|297540141|gb|EFH76202.1| diaminopimelate decarboxylase [Vibrio cholerae MAK 757]
gi|340044073|gb|EGR05028.1| diaminopimelate decarboxylase [Vibrio cholerae HE39]
gi|340045804|gb|EGR06743.1| diaminopimelate decarboxylase [Vibrio cholerae HCUF01]
gi|340046130|gb|EGR07064.1| diaminopimelate decarboxylase [Vibrio cholerae HC-49A2]
gi|340049724|gb|EGR10637.1| diaminopimelate decarboxylase [Vibrio cholerae HE48]
gi|341626847|gb|EGS52203.1| diaminopimelate decarboxylase [Vibrio cholerae HC-70A1]
gi|341628383|gb|EGS53641.1| diaminopimelate decarboxylase [Vibrio cholerae HC-48A1]
gi|341628641|gb|EGS53864.1| diaminopimelate decarboxylase [Vibrio cholerae HC-40A1]
gi|341639220|gb|EGS63843.1| diaminopimelate decarboxylase [Vibrio cholerae HE-09]
gi|341641876|gb|EGS66393.1| diaminopimelate decarboxylase [Vibrio cholerae HC-02A1]
gi|341641992|gb|EGS66503.1| diaminopimelate decarboxylase [Vibrio cholerae HFU-02]
gi|341649183|gb|EGS73178.1| diaminopimelate decarboxylase [Vibrio cholerae BJG-01]
gi|341649259|gb|EGS73253.1| diaminopimelate decarboxylase [Vibrio cholerae HC-38A1]
gi|356422933|gb|EHH76396.1| diaminopimelate decarboxylase [Vibrio cholerae HC-06A1]
gi|356423660|gb|EHH77101.1| diaminopimelate decarboxylase [Vibrio cholerae HC-21A1]
gi|356427808|gb|EHH81048.1| diaminopimelate decarboxylase [Vibrio cholerae HC-19A1]
gi|356434620|gb|EHH87797.1| diaminopimelate decarboxylase [Vibrio cholerae HC-23A1]
gi|356435995|gb|EHH89130.1| diaminopimelate decarboxylase [Vibrio cholerae HC-22A1]
gi|356438881|gb|EHH91883.1| diaminopimelate decarboxylase [Vibrio cholerae HC-28A1]
gi|356445575|gb|EHH98378.1| diaminopimelate decarboxylase [Vibrio cholerae HC-32A1]
gi|356448628|gb|EHI01391.1| diaminopimelate decarboxylase [Vibrio cholerae HC-43A1]
gi|356451285|gb|EHI03980.1| diaminopimelate decarboxylase [Vibrio cholerae HC-33A2]
gi|356455606|gb|EHI08247.1| diaminopimelate decarboxylase [Vibrio cholerae HC-61A1]
gi|356456859|gb|EHI09440.1| diaminopimelate decarboxylase [Vibrio cholerae HC-48B2]
gi|356647808|gb|AET27863.1| diaminopimelate decarboxylase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793530|gb|AFC57001.1| diaminopimelate decarboxylase [Vibrio cholerae IEC224]
gi|395924127|gb|EJH34936.1| diaminopimelate decarboxylase [Vibrio cholerae CP1032(5)]
gi|395925324|gb|EJH36124.1| diaminopimelate decarboxylase [Vibrio cholerae CP1041(14)]
gi|395926463|gb|EJH37246.1| diaminopimelate decarboxylase [Vibrio cholerae CP1038(11)]
gi|395929100|gb|EJH39851.1| diaminopimelate decarboxylase [Vibrio cholerae CP1048(21)]
gi|395935961|gb|EJH46695.1| diaminopimelate decarboxylase [Vibrio cholerae CP1042(15)]
gi|395936350|gb|EJH47075.1| diaminopimelate decarboxylase [Vibrio cholerae CP1046(19)]
gi|395939190|gb|EJH49873.1| diaminopimelate decarboxylase [Vibrio cholerae HC-46A1]
gi|395947268|gb|EJH57924.1| diaminopimelate decarboxylase [Vibrio cholerae HC-43B1]
gi|395948124|gb|EJH58778.1| diaminopimelate decarboxylase [Vibrio cholerae HC-20A2]
gi|395956686|gb|EJH67279.1| diaminopimelate decarboxylase [Vibrio cholerae HE-45]
gi|395956850|gb|EJH67440.1| diaminopimelate decarboxylase [Vibrio cholerae HE-25]
gi|395965008|gb|EJH75195.1| diaminopimelate decarboxylase [Vibrio cholerae HC-56A2]
gi|395965207|gb|EJH75386.1| diaminopimelate decarboxylase [Vibrio cholerae HC-57A2]
gi|395967837|gb|EJH77877.1| diaminopimelate decarboxylase [Vibrio cholerae HC-42A1]
gi|395977025|gb|EJH86455.1| diaminopimelate decarboxylase [Vibrio cholerae HC-47A1]
gi|395979669|gb|EJH89007.1| diaminopimelate decarboxylase [Vibrio cholerae CP1030(3)]
gi|395980133|gb|EJH89433.1| diaminopimelate decarboxylase [Vibrio cholerae CP1047(20)]
gi|408011348|gb|EKG49169.1| diaminopimelate decarboxylase [Vibrio cholerae HC-39A1]
gi|408017462|gb|EKG54965.1| diaminopimelate decarboxylase [Vibrio cholerae HC-50A1]
gi|408018292|gb|EKG55747.1| diaminopimelate decarboxylase [Vibrio cholerae HC-41A1]
gi|408023052|gb|EKG60233.1| diaminopimelate decarboxylase [Vibrio cholerae HC-52A1]
gi|408028256|gb|EKG65161.1| diaminopimelate decarboxylase [Vibrio cholerae HC-56A1]
gi|408028640|gb|EKG65515.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55A1]
gi|408037798|gb|EKG74172.1| diaminopimelate decarboxylase [Vibrio cholerae CP1037(10)]
gi|408038559|gb|EKG74896.1| diaminopimelate decarboxylase [Vibrio cholerae HC-57A1]
gi|408038719|gb|EKG75047.1| diaminopimelate decarboxylase [Vibrio cholerae CP1040(13)]
gi|408045842|gb|EKG81610.1| diaminopimelate decarboxylase [Vibrio Cholerae CP1044(17)]
gi|408047712|gb|EKG83278.1| diaminopimelate decarboxylase [Vibrio cholerae CP1050(23)]
gi|408057019|gb|EKG91888.1| diaminopimelate decarboxylase [Vibrio cholerae HE-16]
gi|408058262|gb|EKG93076.1| diaminopimelate decarboxylase [Vibrio cholerae HC-81A2]
gi|408059989|gb|EKG94716.1| diaminopimelate decarboxylase [Vibrio cholerae HC-51A1]
gi|408612569|gb|EKK85904.1| diaminopimelate decarboxylase [Vibrio cholerae CP1033(6)]
gi|408624575|gb|EKK97519.1| diaminopimelate decarboxylase [Vibrio cholerae HC-1A2]
gi|408628563|gb|EKL01299.1| diaminopimelate decarboxylase [Vibrio cholerae HC-17A1]
gi|408628637|gb|EKL01368.1| diaminopimelate decarboxylase [Vibrio cholerae CP1035(8)]
gi|408632513|gb|EKL04964.1| diaminopimelate decarboxylase [Vibrio cholerae HC-41B1]
gi|408637397|gb|EKL09459.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55C2]
gi|408645062|gb|EKL16729.1| diaminopimelate decarboxylase [Vibrio cholerae HC-50A2]
gi|408645145|gb|EKL16811.1| diaminopimelate decarboxylase [Vibrio cholerae HC-60A1]
gi|408646331|gb|EKL17945.1| diaminopimelate decarboxylase [Vibrio cholerae HC-59A1]
gi|408652635|gb|EKL23845.1| diaminopimelate decarboxylase [Vibrio cholerae HC-61A2]
gi|408660390|gb|EKL31408.1| diaminopimelate decarboxylase [Vibrio cholerae HC-77A1]
gi|408661211|gb|EKL32203.1| diaminopimelate decarboxylase [Vibrio cholerae HC-62A1]
gi|408662548|gb|EKL33480.1| diaminopimelate decarboxylase [Vibrio cholerae HE-40]
gi|408666562|gb|EKL37346.1| diaminopimelate decarboxylase [Vibrio cholerae HE-46]
gi|408850183|gb|EKL90159.1| diaminopimelate decarboxylase [Vibrio cholerae HC-37A1]
gi|408850515|gb|EKL90470.1| diaminopimelate decarboxylase [Vibrio cholerae HC-17A2]
gi|408855533|gb|EKL95234.1| diaminopimelate decarboxylase [Vibrio cholerae HC-02C1]
gi|408859504|gb|EKL99162.1| diaminopimelate decarboxylase [Vibrio cholerae HC-46B1]
gi|408862820|gb|EKM02321.1| diaminopimelate decarboxylase [Vibrio cholerae HC-55B2]
gi|408868132|gb|EKM07477.1| diaminopimelate decarboxylase [Vibrio cholerae HC-44C1]
gi|408871468|gb|EKM10708.1| diaminopimelate decarboxylase [Vibrio cholerae HC-59B1]
gi|408876317|gb|EKM15445.1| diaminopimelate decarboxylase [Vibrio cholerae HC-62B1]
gi|408882384|gb|EKM21217.1| diaminopimelate decarboxylase [Vibrio cholerae HC-69A1]
gi|429224512|gb|EKY30881.1| Diaminopimelate decarboxylase [Vibrio cholerae PS15]
gi|439972380|gb|ELP48666.1| diaminopimelate decarboxylase [Vibrio cholerae 4260B]
gi|443433484|gb|ELS75990.1| diaminopimelate decarboxylase [Vibrio cholerae HC-64A1]
gi|443437322|gb|ELS83418.1| diaminopimelate decarboxylase [Vibrio cholerae HC-65A1]
gi|443441154|gb|ELS90821.1| diaminopimelate decarboxylase [Vibrio cholerae HC-67A1]
gi|443444968|gb|ELS98224.1| diaminopimelate decarboxylase [Vibrio cholerae HC-68A1]
gi|443448829|gb|ELT05442.1| diaminopimelate decarboxylase [Vibrio cholerae HC-71A1]
gi|443451866|gb|ELT12108.1| diaminopimelate decarboxylase [Vibrio cholerae HC-72A2]
gi|443455656|gb|ELT19420.1| diaminopimelate decarboxylase [Vibrio cholerae HC-78A1]
gi|443460171|gb|ELT27560.1| diaminopimelate decarboxylase [Vibrio cholerae HC-7A1]
gi|443463044|gb|ELT34059.1| diaminopimelate decarboxylase [Vibrio cholerae HC-80A1]
gi|443467890|gb|ELT42544.1| diaminopimelate decarboxylase [Vibrio cholerae HC-81A1]
gi|448265939|gb|EMB03172.1| Diaminopimelate decarboxylase [Vibrio cholerae O1 str. Inaba G4222]
Length = 417
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 391
>gi|317050250|ref|YP_004111366.1| diaminopimelate decarboxylase [Desulfurispirillum indicum S5]
gi|316945334|gb|ADU64810.1| diaminopimelate decarboxylase [Desulfurispirillum indicum S5]
Length = 414
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 230/396 (58%), Gaps = 11/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +G L+CE+V + + + V P Y+YS+ + R+ + + QA LN++I +A+K+
Sbjct: 3 FFTYHNGELHCEEVPLSRIAQEV-GTPVYVYSQRTLERHAQVFTQAFANLNAMICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV 186
N+N IL L + G GA +VSG EL AL+AG K +F G GK +++ A E +F+
Sbjct: 62 NSNIHILRVLAEQGIGADIVSGGELYRALKAGIPREKILFAGVGKKADEMEYALSEDIFM 121
Query: 187 -NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L+ + ++ K +V LR+NPDVD + HPY++TG K +KFGI ++
Sbjct: 122 FNVESMEELDLLQATAKRLNKTASVALRVNPDVDARTHPYISTGLKENKFGI---PMESA 178
Query: 246 LDAVK-AHP-NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
L++ + AH + +++ G HCH+GS +T ++ F DA V++ N + ++ ++ ++Y+++GG
Sbjct: 179 LESYRYAHSLSCIRVRGIHCHIGSQLTAIEPFVDAFVIIKNLVRELLSENIPIEYIDMGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P L + + LI+EPGR++ NT + V K NG
Sbjct: 239 GLGITYDQEKP--PLPTELAAAIAPHLKEVPCRLILEPGRAIAGNTGAFLTRVLFTKDNG 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
++ F+++DG+M +L RPSLY ++ I + E+ D+VGPVCES DF K R L
Sbjct: 297 SRKFLIVDGAMNDLARPSLYGSFHDIRPAVVREGNTEV--VDIVGPVCESGDFFAKNRPL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P G L + AGAY +M+S YN + R E V
Sbjct: 355 PPCHPGDILSLMSAGAYGFTMSSNYNSRPRAAEVLV 390
>gi|407071404|ref|ZP_11102242.1| diaminopimelate decarboxylase [Vibrio cyclitrophicus ZF14]
Length = 417
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 227/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYQEDGQLWAEDVALSQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
K N L + G CH+GS +T ++ F DA ++ ID++R+ G + +L++GGGL
Sbjct: 183 YAFAKTLDN-LSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRSDGINIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLDNHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRQGEAVTYDLVGPICETGDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSAGAYGFAMSSNYNTRSRAAEVMV 391
>gi|348590772|ref|YP_004875234.1| diaminopimelate decarboxylase [Taylorella asinigenitalis MCE3]
gi|347974676|gb|AEP37211.1| Diaminopimelate decarboxylase [Taylorella asinigenitalis MCE3]
Length = 425
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 154/414 (37%), Positives = 233/414 (56%), Gaps = 30/414 (7%)
Query: 61 APVEHCFSKKADGFLYCEDVRVQDVMETVEKR----PFYLYSKPQITRNVEAYKQALEGL 116
+P+ +GFLY E++ V ET+ K+ PF LYSK + AY +
Sbjct: 3 SPISFPHIHYKNGFLYVENLSVS---ETISKKNVQTPFVLYSKAALDEAWSAYGSIAKNY 59
Query: 117 -NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
N++I YA+KAN+N IL++ + G G +VSG EL L G DP K IF+G GK +
Sbjct: 60 PNTLICYAVKANSNLAILQYFARAGSGFDIVSGGELLRCLEIGADPKKIIFSGVGKQDWE 119
Query: 176 LVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
+ LA + G+ NV+SE +LE I R AG K V +R+NPD+D + HPY++TG K +K
Sbjct: 120 IKLALESGIKCFNVESESELERIATIGREAGIKAKVSIRVNPDIDARTHPYISTGLKENK 179
Query: 235 FGIRNEKLQWFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
FGI + LD K A + L++VG CH+GS I + + + DA +++ I +
Sbjct: 180 FGIEFSRA---LDIFKRAATLDSLEIVGIDCHIGSQILETEPYLDAVDRVIDLIKALVQA 236
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI-------DTVRELVLSRNLNLIIEPGRSL 345
G E+ +++IGGG GI Y KP ++I +RE L ++ +I+EPGRSL
Sbjct: 237 GIELKHIDIGGGFGIRYLD-----EKPLDIIYLRQALDSKLREAELG-DMQVIMEPGRSL 290
Query: 346 IANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFD 405
+AN+ LV V +K KNF++++ M +LIRPSLY+A+ + + +D + +D
Sbjct: 291 VANSAILVASVIVIKKTEFKNFVILNAGMNDLIRPSLYEAFHGV--LPVIERDGDTDTYD 348
Query: 406 VVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+VGP+CE+ D+L K+R L + G + + GAY +MAS YN + EY V
Sbjct: 349 IVGPICETGDWLAKDRNLSIQE-GDLIAIESVGAYGTTMASNYNSRPFLAEYMV 401
>gi|300702820|ref|YP_003744421.1| diaminopimelate decarboxylase [Ralstonia solanacearum CFBP2957]
gi|299070482|emb|CBJ41777.1| Diaminopimelate decarboxylase [Ralstonia solanacearum CFBP2957]
Length = 419
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 224/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LR+NPDVD + HPY++TG K +KFGI E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGIAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D + + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V A + +DVVGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHIVPVRERGGAATV--YDVVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|409417965|ref|ZP_11257979.1| diaminopimelate decarboxylase [Pseudomonas sp. HYS]
Length = 415
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 150/389 (38%), Positives = 222/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y ALEG++ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSYADALEGVSHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNLLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEEVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T ++ F DA ++ ID++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLEPFLDALDRLLALIDRLGDCGILLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAIRERVGDRDLALVFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V P+ E +D+VGP+CE+ DFL KEREL + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVQ--PRAGEGRTYDIVGPICETGDFLAKERELNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|325271631|ref|ZP_08138133.1| diaminopimelate decarboxylase [Pseudomonas sp. TJI-51]
gi|324103235|gb|EGC00580.1| diaminopimelate decarboxylase [Pseudomonas sp. TJI-51]
Length = 415
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAER-HGTPTYVYSRAHIEAQYRSYTDALQGAEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T +D F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTIDPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PLVADYIKAIRERVGDRDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRGGEGRAYDLVGPICETGDFLGKDRVLDLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVESAGAYGFVMSSNYNTRGRCAEILV 389
>gi|419952467|ref|ZP_14468614.1| diaminopimelate decarboxylase [Pseudomonas stutzeri TS44]
gi|387970512|gb|EIK54790.1| diaminopimelate decarboxylase [Pseudomonas stutzeri TS44]
Length = 415
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 225/396 (56%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY ALEG+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALSALAQRFGT-PTYVYSRAHIEAQYRAYADALEGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK ED+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGQPDRIVFSGVGKTREDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + G K V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 120 HCFNVESTDELERLQQVAAELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A A L++VG CH+GS +T + F DA ++ +D++ A+G + +L++GG
Sbjct: 180 AVY-ARAAELANLQVVGVDCHIGSQLTSLPPFLDALDRLLALVDRLAARGIHIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS++AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIVANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P++ E ++D+VGP+CE+ DFL K+R L
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPREGEGRRYDIVGPICETGDFLAKDRTL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ELAE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|404399428|ref|ZP_10991012.1| diaminopimelate decarboxylase [Pseudomonas fuscovaginae UPB0736]
Length = 415
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E + + E P Y+YS+ I AY ALEG ++ +A+KAN+N
Sbjct: 8 DGELFAEGAALSAIAERF-GTPTYVYSRAHIEAQYRAYADALEGTPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNLLARLGAGFDIVSRGELERVLAAGGRADRIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 AEELERLQQVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEEAYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T +D F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QSPN-LEVLGVDCHIGSQLTSLDPFLDALDRLLGLIDRLGECGIYLQHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLVADYIKAVRERTAGRDLALMFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRPSLY A+ ++ V P+DA+ +DVVGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPSLYQAWMNVTAVR--PRDAQQRTYDVVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|149908508|ref|ZP_01897170.1| diaminopimelate decarboxylase [Moritella sp. PE36]
gi|149808342|gb|EDM68279.1| diaminopimelate decarboxylase [Moritella sp. PE36]
Length = 418
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 232/402 (57%), Gaps = 7/402 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V DV + P Y+YS+ I R+ A+ A ++ YA+KA
Sbjct: 4 FNYQDDGQLFAEQCAVADVADKF-GTPTYVYSRATIERHWHAFNDAAGAHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL + AG DP+K +F+G GK + ++ LA +
Sbjct: 63 NSNIAVLNVLARLGSGFDIVSGGELLRVIAAGGDPSKIVFSGVGKTVAEINLALDHNIHC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +LE I + G + + +R+NP++D HPY++TG K +KFGI + +
Sbjct: 123 FNVESTPELERINDIALSRGVQAPISIRVNPNIDAGTHPYISTGLKENKFGIDIDLAEGV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
P +KL G CH+GS +T++ F DA ++ IDK+ AQG +++L++GGGL
Sbjct: 183 YQVASKMPG-IKLKGVDCHIGSQLTELSPFLDAVDKLLLLIDKLSAQGIVLEHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y G P+P ++ + R L LI EPGR+++AN LV+ V +K K
Sbjct: 242 GVPY--NGETPPQPAEYAQALKAKLAGRKLALIFEPGRAIMANAGILVSKVEYIKLTEHK 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +LIRP+LY A+Q I V+ + + E +DVVGP+CE+ DFLGK R+L T
Sbjct: 300 NFAIVDAAMNDLIRPALYSAWQAIAPVNKS-LERECLNYDVVGPICETGDFLGKNRDL-T 357
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+VV AGAY +M+S YN + RP E V ++ ++
Sbjct: 358 IAMDDYIVVRSAGAYGSTMSSNYNSRSRPAEVMVDGDVAHLV 399
>gi|88813059|ref|ZP_01128301.1| diaminopimelate decarboxylase [Nitrococcus mobilis Nb-231]
gi|88789692|gb|EAR20817.1| diaminopimelate decarboxylase [Nitrococcus mobilis Nb-231]
Length = 425
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/392 (36%), Positives = 221/392 (56%), Gaps = 18/392 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKR---PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
+G L+ ED+ + +V KR P Y+YS+ I + A G + +I YA+KAN+
Sbjct: 12 NGVLHAEDI----ALPSVAKRFGTPCYVYSRRAIEAAWRVFDDAFAGHDHLICYAVKANS 67
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +L L +LG G +VSG EL L AG DP K +F+G K ++ A + G+ N
Sbjct: 68 NLAVLNLLARLGSGFDIVSGGELERVLAAGGDPAKVVFSGVAKTEAEMRRALEVGILCFN 127
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + ++ ++ V LRINPDVDP HPY+ATG +KFGI ++
Sbjct: 128 VESEPELERLAAVAQSLNRRARVSLRINPDVDPDTHPYIATGLSENKFGIDIHAVERVYR 187
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
P + + G H+GS +T+++ DA ++ ID+++ QG E+ +L++GGG+ I
Sbjct: 188 RAADLPG-IDVTGVDFHIGSQLTRIEPITDALERVLALIDRLQGQGIEISHLDVGGGVAI 246
Query: 308 DYYHTGAVLPKPRNLIDTVRELVL---SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
Y P ++ R+L+ SR L +++EPGR+++ N L+ V +K
Sbjct: 247 RYRDE-----TPPSIGTYARQLLARLESRPLRVLLEPGRAIVGNAGVLLTRVEYLKHTAQ 301
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
++F ++D +M +L+RP+LYDA+ IE V P D ++DVVGPVCESADFL ++REL
Sbjct: 302 RHFAIVDAAMNDLLRPALYDAWMAIEAVVPREGDTPTRRYDVVGPVCESADFLARDRELA 361
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
L V AGAY M+S YN + RP E
Sbjct: 362 LAAG-DLLAVRSAGAYGFVMSSNYNSRPRPAE 392
>gi|294851220|ref|ZP_06791893.1| diaminopimelate decarboxylase [Brucella sp. NVSL 07-0026]
gi|294819809|gb|EFG36808.1| diaminopimelate decarboxylase [Brucella sp. NVSL 07-0026]
Length = 421
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKKGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|23502831|ref|NP_698958.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|62290831|ref|YP_222624.1| LysA, diaminopimelate decarboxylase [Brucella abortus bv. 1 str.
9-941]
gi|82700743|ref|YP_415317.1| diaminopimelate decarboxylase [Brucella melitensis biovar Abortus
2308]
gi|148560505|ref|YP_001259800.1| diaminopimelate decarboxylase [Brucella ovis ATCC 25840]
gi|161619901|ref|YP_001593788.1| diaminopimelate decarboxylase [Brucella canis ATCC 23365]
gi|189025050|ref|YP_001935818.1| diaminopimelate decarboxylase [Brucella abortus S19]
gi|225628182|ref|ZP_03786217.1| diaminopimelate decarboxylase [Brucella ceti str. Cudo]
gi|225853419|ref|YP_002733652.1| diaminopimelate decarboxylase [Brucella melitensis ATCC 23457]
gi|237816345|ref|ZP_04595338.1| diaminopimelate decarboxylase [Brucella abortus str. 2308 A]
gi|256263101|ref|ZP_05465633.1| diaminopimelate decarboxylase [Brucella melitensis bv. 2 str. 63/9]
gi|260546098|ref|ZP_05821838.1| diaminopimelate decarboxylase [Brucella abortus NCTC 8038]
gi|260567535|ref|ZP_05838005.1| diaminopimelate decarboxylase [Brucella suis bv. 4 str. 40]
gi|260755660|ref|ZP_05868008.1| diaminopimelate decarboxylase [Brucella abortus bv. 6 str. 870]
gi|260758885|ref|ZP_05871233.1| diaminopimelate decarboxylase [Brucella abortus bv. 4 str. 292]
gi|260760609|ref|ZP_05872952.1| diaminopimelate decarboxylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884685|ref|ZP_05896299.1| diaminopimelate decarboxylase [Brucella abortus bv. 9 str. C68]
gi|261214935|ref|ZP_05929216.1| diaminopimelate decarboxylase [Brucella abortus bv. 3 str. Tulya]
gi|261221035|ref|ZP_05935316.1| diaminopimelate decarboxylase [Brucella ceti B1/94]
gi|261314977|ref|ZP_05954174.1| diaminopimelate decarboxylase [Brucella pinnipedialis M163/99/10]
gi|261316465|ref|ZP_05955662.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|261751130|ref|ZP_05994839.1| diaminopimelate decarboxylase [Brucella suis bv. 5 str. 513]
gi|261755692|ref|ZP_05999401.1| diaminopimelate decarboxylase [Brucella suis bv. 3 str. 686]
gi|261758922|ref|ZP_06002631.1| diaminopimelate decarboxylase [Brucella sp. F5/99]
gi|265987535|ref|ZP_06100092.1| diaminopimelate decarboxylase [Brucella pinnipedialis M292/94/1]
gi|265996995|ref|ZP_06109552.1| diaminopimelate decarboxylase [Brucella ceti M490/95/1]
gi|297247217|ref|ZP_06930935.1| diaminopimelate decarboxylase [Brucella abortus bv. 5 str. B3196]
gi|340791572|ref|YP_004757037.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|376272296|ref|YP_005150874.1| diaminopimelate decarboxylase [Brucella abortus A13334]
gi|376275426|ref|YP_005115865.1| diaminopimelate decarboxylase [Brucella canis HSK A52141]
gi|376281626|ref|YP_005155632.1| diaminopimelate decarboxylase [Brucella suis VBI22]
gi|384212334|ref|YP_005601418.1| diaminopimelate decarboxylase [Brucella melitensis M5-90]
gi|384225618|ref|YP_005616782.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|384409435|ref|YP_005598056.1| diaminopimelate decarboxylase [Brucella melitensis M28]
gi|384445974|ref|YP_005604693.1| diaminopimelate decarboxylase [Brucella melitensis NI]
gi|423168048|ref|ZP_17154751.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI435a]
gi|423169576|ref|ZP_17156251.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI474]
gi|423175434|ref|ZP_17162103.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI486]
gi|423177716|ref|ZP_17164361.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI488]
gi|423179009|ref|ZP_17165650.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI010]
gi|423182140|ref|ZP_17168777.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI016]
gi|423186918|ref|ZP_17173532.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI021]
gi|423190646|ref|ZP_17177254.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI259]
gi|23348856|gb|AAN30873.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|62196963|gb|AAX75263.1| LysA, diaminopimelate decarboxylase [Brucella abortus bv. 1 str.
9-941]
gi|82616844|emb|CAJ11940.1| Orn/DAP/Arg decarboxylase, family 2:ATP/GTP-binding site motif A
(P-loop):Diaminopimelate decarboxylase [Brucella
melitensis biovar Abortus 2308]
gi|148371762|gb|ABQ61741.1| diaminopimelate decarboxylase [Brucella ovis ATCC 25840]
gi|161336712|gb|ABX63017.1| diaminopimelate decarboxylase [Brucella canis ATCC 23365]
gi|189020622|gb|ACD73344.1| diaminopimelate decarboxylase [Brucella abortus S19]
gi|225617007|gb|EEH14054.1| diaminopimelate decarboxylase [Brucella ceti str. Cudo]
gi|225641784|gb|ACO01698.1| diaminopimelate decarboxylase [Brucella melitensis ATCC 23457]
gi|237788412|gb|EEP62627.1| diaminopimelate decarboxylase [Brucella abortus str. 2308 A]
gi|260096205|gb|EEW80081.1| diaminopimelate decarboxylase [Brucella abortus NCTC 8038]
gi|260157053|gb|EEW92133.1| diaminopimelate decarboxylase [Brucella suis bv. 4 str. 40]
gi|260669203|gb|EEX56143.1| diaminopimelate decarboxylase [Brucella abortus bv. 4 str. 292]
gi|260671041|gb|EEX57862.1| diaminopimelate decarboxylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675768|gb|EEX62589.1| diaminopimelate decarboxylase [Brucella abortus bv. 6 str. 870]
gi|260874213|gb|EEX81282.1| diaminopimelate decarboxylase [Brucella abortus bv. 9 str. C68]
gi|260916542|gb|EEX83403.1| diaminopimelate decarboxylase [Brucella abortus bv. 3 str. Tulya]
gi|260919619|gb|EEX86272.1| diaminopimelate decarboxylase [Brucella ceti B1/94]
gi|261295688|gb|EEX99184.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|261304003|gb|EEY07500.1| diaminopimelate decarboxylase [Brucella pinnipedialis M163/99/10]
gi|261738906|gb|EEY26902.1| diaminopimelate decarboxylase [Brucella sp. F5/99]
gi|261740883|gb|EEY28809.1| diaminopimelate decarboxylase [Brucella suis bv. 5 str. 513]
gi|261745445|gb|EEY33371.1| diaminopimelate decarboxylase [Brucella suis bv. 3 str. 686]
gi|262551463|gb|EEZ07453.1| diaminopimelate decarboxylase [Brucella ceti M490/95/1]
gi|263093002|gb|EEZ17152.1| diaminopimelate decarboxylase [Brucella melitensis bv. 2 str. 63/9]
gi|264659732|gb|EEZ29993.1| diaminopimelate decarboxylase [Brucella pinnipedialis M292/94/1]
gi|297174386|gb|EFH33733.1| diaminopimelate decarboxylase [Brucella abortus bv. 5 str. B3196]
gi|326409982|gb|ADZ67047.1| diaminopimelate decarboxylase [Brucella melitensis M28]
gi|326539699|gb|ADZ87914.1| diaminopimelate decarboxylase [Brucella melitensis M5-90]
gi|340560031|gb|AEK55269.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|343383798|gb|AEM19290.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|349743963|gb|AEQ09506.1| diaminopimelate decarboxylase [Brucella melitensis NI]
gi|358259225|gb|AEU06960.1| diaminopimelate decarboxylase [Brucella suis VBI22]
gi|363399902|gb|AEW16872.1| diaminopimelate decarboxylase [Brucella abortus A13334]
gi|363403993|gb|AEW14288.1| diaminopimelate decarboxylase [Brucella canis HSK A52141]
gi|374535878|gb|EHR07399.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI486]
gi|374539797|gb|EHR11300.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI435a]
gi|374543255|gb|EHR14738.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI474]
gi|374549304|gb|EHR20748.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI488]
gi|374551953|gb|EHR23382.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI016]
gi|374552325|gb|EHR23753.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI010]
gi|374554416|gb|EHR25827.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI259]
gi|374557630|gb|EHR29026.1| diaminopimelate decarboxylase [Brucella abortus bv. 1 str. NI021]
Length = 421
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|294671408|ref|ZP_06736257.1| hypothetical protein NEIELOOT_03116 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306885|gb|EFE48128.1| hypothetical protein NEIELOOT_03116 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 406
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 222/392 (56%), Gaps = 20/392 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE++ ++ E P Y+YS+ ++ Y+ A L +I YA+KAN N ++
Sbjct: 3 LHCENISYTELAERF-GTPLYVYSQAELDSAFARYQTAFAALAPLICYAVKANGNLSVIR 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+LG G +VSG EL L AG K IF+G GK ++ A + G+ NV+S +
Sbjct: 62 RFAELGSGFDIVSGGELARVLAAGGRADKTIFSGVGKSAAEIEFALKSGIKCFNVESLPE 121
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L+ I + IAG+ V LRINPDVD Q HPY++TG K +KFGI E +
Sbjct: 122 LDRI---NEIAGRLKTAAPVSLRINPDVDAQTHPYISTGLKANKFGIAMEDAERAYLHAA 178
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P+ L ++G CH+GS + K++ +A ++ IDK+ A G + ++++GGG+GI Y
Sbjct: 179 SLPH-LNIIGIDCHIGSQLIKLEPLVEACERLLPLIDKLAAHGIGLQHIDLGGGVGIVYQ 237
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P V++L+ R+L LI+EPGRSL+ N L+ V VK NG KNF+V+
Sbjct: 238 NEET--PDLAAYAAAVQKLLGGRSLKLILEPGRSLVGNAGALLTRVEFVKQNGDKNFVVV 295
Query: 371 DGSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPD 427
D +M +L+RP+LY AY HIE P AP A D+VGP+CE+ DFL K+R + +
Sbjct: 296 DAAMNDLMRPALYQAYHHIENAEPSISAPFAA-----DIVGPICETGDFLAKDR-MISAR 349
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LVV AGAY SMA YN + R E +
Sbjct: 350 AGDLLVVRSAGAYASSMAGNYNTRPRAAEVLI 381
>gi|407682069|ref|YP_006797243.1| diaminopimelate decarboxylase [Alteromonas macleodii str. 'English
Channel 673']
gi|407243680|gb|AFT72866.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'English Channel 673']
Length = 416
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/403 (37%), Positives = 230/403 (57%), Gaps = 16/403 (3%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+ G L+ E V V D+ P Y+YS+ + R+ A+ A+ ++ YA+KAN+N
Sbjct: 7 SQGQLHAEQVAVSDIAAQ-HGTPVYIYSRATLERHWHAFNDAIGEHPHLVCYAVKANSNI 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG G +VS EL + AG D +K +F+G GK +++ A ++G+ NV+
Sbjct: 66 GVLSVLAKLGSGFDIVSAGELARVIEAGGDASKVVFSGVGKKHDEIRYALEQGIMCFNVE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE +L I + G K + LRINPDVD + HPY++TG K +KFGI E+ +
Sbjct: 126 SEPELHRINQVAGEMGVKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYELA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P+ L +VG CH+GS +T++ F DA ++ ID++ + +++L++GGGLG+ Y
Sbjct: 186 ASLPH-LNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERNIIIEHLDVGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
+ P P+ + E ++ R NL LI+EPGR++ AN LV V +K K+F
Sbjct: 245 NNEQP--PHPKAYAQAMAEKMVGRENLKLILEPGRAIAANAGILVTEVEFIKEGEEKSFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHI----ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
++D +M +L+RP+LY A+Q I E + P+ +DVVGPVCE+ DF+GK+REL
Sbjct: 303 IVDAAMNDLLRPALYSAWQKIIPVKEETTATPR-----IYDVVGPVCETGDFIGKDRELA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY MAS YN + RP E V +I++
Sbjct: 358 IEPTDL-LAVRSAGAYGFVMASNYNSRCRPAEIMVDGDKAIVV 399
>gi|297787806|pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787807|pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787808|pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787809|pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 28 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 86
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 87 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 146
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 147 FNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQV 206
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 207 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 265
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 266 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 323
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 324 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 381
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 382 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 415
>gi|26991903|ref|NP_747328.1| diaminopimelate decarboxylase [Pseudomonas putida KT2440]
gi|397697140|ref|YP_006535023.1| Diaminopimelate decarboxylase [Pseudomonas putida DOT-T1E]
gi|24987026|gb|AAN70792.1|AE016723_4 diaminopimelate decarboxylase [Pseudomonas putida KT2440]
gi|397333870|gb|AFO50229.1| Diaminopimelate decarboxylase [Pseudomonas putida DOT-T1E]
Length = 415
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PRVADYIKAIRERVGERDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVESAGAYGFVMSSNYNTRGRCAEILV 389
>gi|436842286|ref|YP_007326664.1| Diaminopimelate decarboxylase [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432171192|emb|CCO24563.1| Diaminopimelate decarboxylase [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 412
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 138/391 (35%), Positives = 225/391 (57%), Gaps = 17/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E++ + ++ P Y+YS + R+ +A+ A GL+ + Y++KAN+N +L
Sbjct: 11 LHAENISIAELANEY-GTPLYVYSAATLRRHFKAFDSAFTGLDHMTCYSVKANSNLSVLR 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L ++G G +VSG EL AL+AG +K +F+G GK ++ A + + + NV+S +
Sbjct: 70 LLAEMGAGMDIVSGGELFRALKAGVSSSKIVFSGVGKKAYEIAEALKADILMFNVESVGE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
+ I + K + RINPDVDP+ HPY++TG K +KFG+ + A +A+
Sbjct: 130 MHRINEVAMSMNKTARISFRINPDVDPKTHPYISTGMKKNKFGLD------MVTAKEAYQ 183
Query: 254 NELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
KL VG CH+GS +T ++ F +A ++ + +++ G E+++L++GGGLGI
Sbjct: 184 TAKKLSNVNPVGIDCHIGSQLTTIEPFLEALDKLLAFREELGLLGIEIEHLDLGGGLGIT 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P P+ + + + + +NL +I+EPGR + N LV V K TK+F+
Sbjct: 244 YDEEQP--PHPKEFGEALSKALEGKNLKVILEPGRVIAGNAGILVTEVIYTKKTPTKDFL 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L+RPSLY +Y +I V D + +DVVGP+CES DFL K+RE+P +
Sbjct: 302 IVDAAMNDLVRPSLYQSYHNISEV--VKNDRPVVDYDVVGPICESGDFLAKDREIPELMQ 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V+ AGAY +M+S YN ++R E V
Sbjct: 360 GELLAVYSAGAYGFTMSSNYNSRLRAAEIIV 390
>gi|395446118|ref|YP_006386371.1| diaminopimelate decarboxylase [Pseudomonas putida ND6]
gi|388560115|gb|AFK69256.1| diaminopimelate decarboxylase [Pseudomonas putida ND6]
Length = 415
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAADMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PRVADYIKAIRERVGERDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVESAGAYGFVMSSNYNTRGRCAEILV 389
>gi|256370385|ref|YP_003107896.1| diaminopimelate decarboxylase [Brucella microti CCM 4915]
gi|256000548|gb|ACU48947.1| diaminopimelate decarboxylase [Brucella microti CCM 4915]
Length = 421
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSHGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|148978773|ref|ZP_01815153.1| diaminopimelate decarboxylase [Vibrionales bacterium SWAT-3]
gi|145962194|gb|EDK27478.1| diaminopimelate decarboxylase [Vibrionales bacterium SWAT-3]
Length = 417
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 225/395 (56%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYQEDGQLWAEDVALSQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID++RA G + +L++GGGL
Sbjct: 183 YAFAQTLEN-LSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGINIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLENHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGP+CE+ DFLGK+REL
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVIPRQGEAVTYDLVGPICETGDFLGKDREL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSAGAYGFVMSSNYNTRSRAAEVMV 391
>gi|148550336|ref|YP_001270438.1| diaminopimelate decarboxylase [Pseudomonas putida F1]
gi|148514394|gb|ABQ81254.1| diaminopimelate decarboxylase [Pseudomonas putida F1]
Length = 415
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PRVADYIKAIRERVGERDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLTE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVESAGAYGFVMSSNYNTRGRCAEILV 389
>gi|424778844|ref|ZP_18205783.1| diaminopimelate decarboxylase [Alcaligenes sp. HPC1271]
gi|422886368|gb|EKU28791.1| diaminopimelate decarboxylase [Alcaligenes sp. HPC1271]
Length = 422
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 223/390 (57%), Gaps = 11/390 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + + E P Y+YS+ + E+Y+ A + ++ Y +KAN+N IL+
Sbjct: 14 LHAEQVPLNKLAEEF-GTPLYVYSRQALRDAWESYRVAGQDRKLLVCYGMKANSNLAILQ 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+LG G +VSG EL + AG DP K +F+G GK + ++ A + GV NV+SE +
Sbjct: 73 EFARLGTGFDIVSGGELARVIAAGGDPGKVVFSGVGKQVWEIEAALKAGVKCFNVESEGE 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + K V LR+NPDVD + HPY++TG K++KFG+ ++ + P
Sbjct: 133 LERVAQVAERMNVKAPVSLRVNPDVDARTHPYISTGLKDNKFGVPIDQAPRIYARAQELP 192
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ L +VG CH+GS IT+V + DA ++ I ++ QG + +L++GGGLGI Y T
Sbjct: 193 S-LNIVGVDCHIGSQITEVSPYLDALDKLIKLILALKEQGVNLTHLDLGGGLGIRY--TD 249
Query: 314 AVLPKPRNLIDTVRELVLSRN----LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
L P L+ V L +N L +++EPGRS++ N L++ V +K TKNF +
Sbjct: 250 ETLVTPTQLLTEVFA-ALDKNGLGHLEIVLEPGRSMVGNAGVLLSRVEYLKHGETKNFAI 308
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
ID +M +LIRP+LYDA+ +E V P P ++D+VGP+CES D+L ++R+L
Sbjct: 309 IDAAMNDLIRPTLYDAWHGVEAVEPRPVTESTPRYDLVGPICESGDWLARDRQLDLKQDD 368
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY +MAS YN + R E V
Sbjct: 369 L-VAIMSAGAYAFTMASQYNTRPRAAEILV 397
>gi|403531086|ref|YP_006665615.1| diaminopimelate decarboxylase [Bartonella quintana RM-11]
gi|403233157|gb|AFR26900.1| diaminopimelate decarboxylase [Bartonella quintana RM-11]
Length = 424
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/407 (36%), Positives = 224/407 (55%), Gaps = 6/407 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ E + + + + V PFY YS + + Y+ A + S+I YA+
Sbjct: 2 HFFSYN-QGVLHAEGLSLSALAQDV-GTPFYCYSANALVTRFKDYQNAFRDMPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCI-FNGNGKLLEDLVLA-AQE 182
KAN+N +L+ L G GA +VS ELR AL AG P CI ++G GK ++++ A A +
Sbjct: 60 KANSNQAVLQLLAANGAGADVVSEGELRRALAAGI-PAHCIVYSGVGKTVKEIDFALAHD 118
Query: 183 GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
NV+SE +LE + + K + LRINPDVD + H + TG +KFGI L
Sbjct: 119 ICCFNVESEPELEQLSARAVAFSKTARISLRINPDVDAKTHKKITTGKYENKFGI-PLSL 177
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
W + A + + G H+GS I + F DA ++ +++ + + G+ + +++IG
Sbjct: 178 AWDVYKKAAQLPGIHVCGVDMHIGSQICDLKPFEDAFLIFADFVRHLSSSGYALTHVDIG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y H +P + V+ + L +I+EPGRS+I LV V +K
Sbjct: 238 GGLGIAYGHEQHSVPSLFDYAALVKRHIAPLGLKIIVEPGRSIIGEAGVLVTSVIYLKRG 297
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+NF+V+D +M +LIRP+LYDA+Q++ LV AP+DA + D+VG VCE+ D+L +R
Sbjct: 298 EGRNFVVVDAAMNDLIRPTLYDAWQNVVLVKQAPEDASFIRADIVGSVCETGDYLALDRR 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G L + AGAY MASTYN ++ PE V+ II P
Sbjct: 358 VPILAAGDLLAITGAGAYSAVMASTYNSRLLVPEVLVQDTRYAIIRP 404
>gi|90420245|ref|ZP_01228153.1| diaminopimelate decarboxylase [Aurantimonas manganoxydans SI85-9A1]
gi|90335579|gb|EAS49329.1| diaminopimelate decarboxylase [Aurantimonas manganoxydans SI85-9A1]
Length = 424
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 4/381 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V+ + V PFY YS +TR+ + +A +++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVSVETIAHDV-GTPFYCYSTATLTRHYTVFAEAFADIDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG GA +VSG EL ALRAG K +F+G GK + ++ LA G+F N++S
Sbjct: 67 VLKTLAALGAGADVVSGGELLRALRAGIPAEKIMFSGVGKSVPEIDLALASGIFCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE I + AG+ +V RINPDVD + H ++TG K+ KFGI E+ + D +
Sbjct: 127 EPELEMIAARAVAAGRTAHVSFRINPDVDARTHAKISTGKKSDKFGIAYERAEAVYDRAR 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P + + G H+GS I +++ F A + + ++R G ++ ++++GGGLG+ Y
Sbjct: 187 SLPG-IAVSGIDMHIGSQIVELEPFDQAFERLAGLVRRLRGAGHDIAHVDLGGGLGVPYS 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P P + V+ V + ++ EPGR + AN LV V VK K F+++
Sbjct: 246 RTNTPPPAPPAYAEIVKRHVRDLDCKVVFEPGRLIAANAGILVTRVVYVKEAEGKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRP+LYDA+ I V P DA DVVGPVCES D+ + R++P G
Sbjct: 306 DAGMNDLIRPTLYDAWHDIHPVIDDP-DAPRLVADVVGPVCESGDYFARARDIPAVKAGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLK 451
+ + AGAY + TYN +
Sbjct: 365 LVYLSSAGAYGAVQSGTYNSR 385
>gi|386332188|ref|YP_006028357.1| diaminopimelate decarboxylase [Ralstonia solanacearum Po82]
gi|334194636|gb|AEG67821.1| diaminopimelate decarboxylase [Ralstonia solanacearum Po82]
Length = 419
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 224/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LR+NPDVD + HPY++TG K +KFG+ E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D + + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V A + +DVVGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHIVPVRERGGAATV--YDVVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|343497795|ref|ZP_08735851.1| diaminopimelate decarboxylase [Vibrio nigripulchritudo ATCC 27043]
gi|342816583|gb|EGU51479.1| diaminopimelate decarboxylase [Vibrio nigripulchritudo ATCC 27043]
Length = 417
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 231/400 (57%), Gaps = 19/400 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + ++ E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVALTELAEQY-GTPLYVYSRATLERHWNAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNIGVLNVLARLGSGFDIVSQGELERVLAAGGDPAKIVFSGVGKTATEMRRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + ++ K + LRINPDVD + HPY++TG +KFGI F
Sbjct: 123 FNVESEPELELLNQVAKELNVKAPISLRINPDVDAKTHPYISTGLLENKFGIA------F 176
Query: 246 LDAVKAHP-----NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
A++ + L + G CH+GS +T ++ F DA ++ ID+++A+G E+D+L+
Sbjct: 177 DQALRVYKFAQSLEHLDIHGIDCHIGSQLTDIEPFIDAVDRLLGLIDQLKAEGIEIDHLD 236
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
+GGGLG+ Y + P+P + + L NL LI EPGR++ AN L+ V +
Sbjct: 237 VGGGLGVVY--KDELPPQPSDYAKALLARLDNHSNLELIFEPGRAIAANAGILLTQVEFL 294
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K KNF +ID +M +L+RP+LY A+Q I V P++ E + +D+VGP+CE+ DFLGK
Sbjct: 295 KHTEHKNFAIIDAAMNDLMRPALYQAWQDI--VPVTPREGEPTNYDLVGPICETGDFLGK 352
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+R L ++G L V AGAY M+S YN + R E V
Sbjct: 353 DRAL-VLEQGDLLAVRSAGAYGFVMSSNYNTRTRAAEIMV 391
>gi|171060084|ref|YP_001792433.1| diaminopimelate decarboxylase [Leptothrix cholodnii SP-6]
gi|170777529|gb|ACB35668.1| diaminopimelate decarboxylase [Leptothrix cholodnii SP-6]
Length = 422
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 229/400 (57%), Gaps = 17/400 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED ++ + + P Y+YS+ + + AY++AL G +I YA+KAN++ +L+
Sbjct: 16 LYLEDCQLATLAQQ-HGTPLYVYSQASMLDALAAYQRALAGRPHLICYAMKANSSLAVLQ 74
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ GCG +VSG EL+ L AG +K +F+G GK ++ A + GV NV+SE +
Sbjct: 75 TFARAGCGFDIVSGGELQRVLAAGASASKVVFSGVGKTRTEMRQALEAGVRCFNVESESE 134
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L + + G + V LR+NPDVD HPY++TG K +KFGI +E+ AV H
Sbjct: 135 LALLSQVAVELGVRAPVSLRVNPDVDAGTHPYISTGLKGNKFGIAHEQAL----AVYRHA 190
Query: 254 NELKLV---GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+L + G CH+GS +T+V F DA +++ ++ I A G + +L++GGGLGI Y
Sbjct: 191 AQLPGIAVRGIDCHIGSQLTEVAPFLDALDRILDLVEAIEAAGITLHHLDLGGGLGITY- 249
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
T P LI + + +R + ++ EPGRSL+ N L+ V +K TKNF
Sbjct: 250 -TDETPPSADELIAQLLARIDARGHGHREIVFEPGRSLVGNAGVLLTEVLYLKPGETKNF 308
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP++Y+A+ I V +DA +DVVGPVCES D+LG+EREL
Sbjct: 309 CIVDAAMNDLMRPAMYEAWMGI--VPCTERDAPAVTWDVVGPVCESGDWLGRERELAVAP 366
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L + AGAY M+MAS YN + R E VR + +I
Sbjct: 367 -GDHLAILSAGAYGMAMASNYNTRGRAAEVMVRGHQATLI 405
>gi|386014498|ref|YP_005932775.1| LysA_2 [Pseudomonas putida BIRD-1]
gi|421523389|ref|ZP_15970018.1| diaminopimelate decarboxylase [Pseudomonas putida LS46]
gi|313501204|gb|ADR62570.1| LysA_2 [Pseudomonas putida BIRD-1]
gi|402752375|gb|EJX12880.1| diaminopimelate decarboxylase [Pseudomonas putida LS46]
Length = 415
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PQVADYIKAIRERVGERDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVESAGAYGFVMSSNYNTRGRCAEILV 389
>gi|299065455|emb|CBJ36624.1| Diaminopimelate decarboxylase [Ralstonia solanacearum CMR15]
Length = 419
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 225/396 (56%), Gaps = 15/396 (3%)
Query: 70 KADGFLYCEDVRVQDVMETVEKR---PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
+ DG L E V +E + R P Y+YS+ +T N AY A EG N+ + YA+KA
Sbjct: 7 RQDGALMIEGV----ALEAIAARFGTPTYVYSRAALTANYRAYAAACEGRNARVQYAMKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV
Sbjct: 63 NSNLAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEMRLALEAGVAC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L + + GK V LR+NPDVD + HPY++TG K +KFGI E++
Sbjct: 123 FNVESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGIAFEEVLPT 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGL
Sbjct: 183 YRAAAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGL 241
Query: 306 GIDYYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GI Y + R L+D + + + ++ EPGRSL+ N L+ V +K
Sbjct: 242 GITYTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGA 300
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF ++D +M +L RP++Y+AY HI V + + +D+VGPVCES D+LG++R L
Sbjct: 301 AKNFCIVDAAMNDLARPAMYEAYHHI--VPVRERGGAPTVYDIVGPVCESGDWLGRDRAL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 359 DAQP-GDLLAILSAGAYGFTMSSNYNTRGRAAEVIV 393
>gi|17547698|ref|NP_521100.1| diaminopimelate decarboxylase [Ralstonia solanacearum GMI1000]
gi|17430003|emb|CAD16688.1| probable diaminopimelate decarboxylase protein [Ralstonia
solanacearum GMI1000]
Length = 451
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/406 (36%), Positives = 230/406 (56%), Gaps = 20/406 (4%)
Query: 69 KKADGFLY-CEDVRVQD--------VMETVEKR---PFYLYSKPQITRNVEAYKQALEGL 116
++ DGFL+ E + QD +E + R P Y+YS+ +T N AY A EG
Sbjct: 25 RRPDGFLFMSESLIRQDGALMIEGVALEAIAARFGTPTYVYSRAALTANYRAYAAACEGR 84
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
N+ + YA+KAN+N +L+ +LG G +VSG ELR L AG +F+G GK +++
Sbjct: 85 NARVQYAMKANSNLAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEM 144
Query: 177 VLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235
LA + GV NV+S +L + + GK V LR+NPDVD + HPY++TG K +KF
Sbjct: 145 RLALEAGVACFNVESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKF 204
Query: 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE 295
G+ +++ A A PN L++VG CH+GS IT+V + DA +++ + ++ A+G
Sbjct: 205 GVAFDEVLPTYRAAAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIR 263
Query: 296 VDYLNIGGGLGIDYYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLV 353
+ ++++GGGLGI Y + R L+D + + + ++ EPGRSL+ N L+
Sbjct: 264 LSHIDVGGGLGITYTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLL 322
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
V +K KNF ++D +M +L RP++Y+AY HI V + + +D+VGPVCES
Sbjct: 323 TRVEFLKPGAAKNFCIVDAAMNDLARPAMYEAYHHI--VPVRERGGAPTVYDIVGPVCES 380
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D+LG++R L G L + AGAY +M+S YN + R E V
Sbjct: 381 GDWLGRDRALDA-QPGDLLAILSAGAYGFTMSSNYNTRGRAAEVIV 425
>gi|71279638|ref|YP_267983.1| diaminopimelate decarboxylase [Colwellia psychrerythraea 34H]
gi|71145378|gb|AAZ25851.1| diaminopimelate decarboxylase [Colwellia psychrerythraea 34H]
Length = 420
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 218/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
++ E++ + D+ + V+ PFY YS I + +AYK A +++I YA+KAN+N +L
Sbjct: 14 MFVENIALSDIAQHVQT-PFYCYSSTAIETSFQAYKNAFSSQDALICYAVKANSNQAVLA 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L KLG GA +VS E+R A+ AG K +++G K E++ A G+F NV+SE +
Sbjct: 73 TLAKLGSGADVVSMGEIRRAITAGIPADKIVYSGVAKTEEEIHYALSLGIFQFNVESEPE 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + K + RINPDV Q H ++TG +KFG+ K + + P
Sbjct: 133 LELISKVATSLNKTAAIAFRINPDVCAQTHAKISTGKAENKFGVPISKARIAYKRAASLP 192
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+K+ G H+GS +T + F +A + ++++RA G E+ +++GGGLGI Y
Sbjct: 193 G-IKVQGVDVHIGSQLTSLAPFEEAYQRIAELVNELRADGHEISVVDVGGGLGITYLDE- 250
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
++P ++ D V+ + N +IIEPGRSL+ N LV+ V +K + F+++D
Sbjct: 251 -IIPSKQSYADLVKAQLGHLNCKIIIEPGRSLLGNAGILVSSVVFIKNGEERQFLILDAG 309
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRPS+Y+AY I V+ E+ +DVVGPVCE+ D K R++ D G +
Sbjct: 310 MNDLIRPSMYEAYHQIIAVNKGAN--ELKTYDVVGPVCETGDTFAKARQVHKSDAGDLIA 367
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVR 460
+ +GAY M+S+YN +M PE V+
Sbjct: 368 IMSSGAYGSVMSSSYNTRMLAPEVMVK 394
>gi|307721570|ref|YP_003892710.1| diaminopimelate decarboxylase [Sulfurimonas autotrophica DSM 16294]
gi|306979663|gb|ADN09698.1| diaminopimelate decarboxylase [Sulfurimonas autotrophica DSM 16294]
Length = 403
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 6/370 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y ++ K+A +G SII YA+KAN+N ++ H K+G GA VS E+R
Sbjct: 14 PLYVYDFDYMSEQYTELKEAFKGRKSIIAYAVKANSNLSVVRHFAKMGSGADCVSIGEVR 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
A AG K IF+G GK +++ A ++ + ++NV+SE +L+ + + G+ +
Sbjct: 74 RAFLAGIPAYKIIFSGVGKSDDEIREAIEKDILYINVESEAELQRVESIAEELGRPSRIS 133
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP++DPQ HPY++TG ++KFG+ + K + L VG H H+GS +T+
Sbjct: 134 IRVNPNIDPQTHPYISTGLHDNKFGVDLSTAKRMYIQAK-NSEHLDPVGIHFHIGSQLTQ 192
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+ R+AA ++ + I ++A E+ + ++GGGLG+ Y + + KP + + +
Sbjct: 193 LQPIREAAEIVADLIRSLQAIDIELKFFDVGGGLGVKYGNEETI--KPYDYAQAILSTLT 250
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
+ +L ++ EPGR L AN V V K NG K F+V+DG+M +L+RPSLY+AY IE
Sbjct: 251 ALDLTILCEPGRFLTANAGYFVTKVLYEKQNGDKKFVVVDGAMNDLLRPSLYNAYHKIEA 310
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
++ + + + D+VGPVCES DF K LP +R LV+H AGAY M S YN +
Sbjct: 311 IT--DNNGKTREVDIVGPVCESGDFFAKNYPLPELNRNDLLVIHSAGAYGFGMGSNYNTR 368
Query: 452 MRPPEYWVRS 461
R E V++
Sbjct: 369 GRSAEVAVQN 378
>gi|260562895|ref|ZP_05833381.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|265992008|ref|ZP_06104565.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str.
Rev.1]
gi|260152911|gb|EEW88003.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|263003074|gb|EEZ15367.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str.
Rev.1]
Length = 421
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 217/386 (56%), Gaps = 3/386 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPE 456
+ + GAY ++STYN ++ PE
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPE 391
>gi|323495294|ref|ZP_08100375.1| diaminopimelate decarboxylase [Vibrio brasiliensis LMG 20546]
gi|323310471|gb|EGA63654.1| diaminopimelate decarboxylase [Vibrio brasiliensis LMG 20546]
Length = 417
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 232/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + ++ + P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVALTELAQQF-GTPLYVYSRATLERHWHAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGEPSKVVFSGVGKTEAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + GKK + LRINPDVD HPY++TG +++KFGI E+
Sbjct: 123 FNVESEPELERLNKVAGELGKKAPISLRINPDVDANTHPYISTGLRDNKFGIAFERAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ + L + G CH+GS +T ++ F DA ++ ID +++QG +++L++GGGL
Sbjct: 183 YKFAQSLEH-LDVRGIDCHIGSQLTDIEPFIDATDRLLALIDDLKSQGVTIEHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPEPSDYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVCPREGEPVTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN + R E V
Sbjct: 358 IEENDL-LAVRSAGAYGFVMSSNYNTRSRAAEVMV 391
>gi|90019887|ref|YP_525714.1| diaminopimelate decarboxylase [Saccharophagus degradans 2-40]
gi|89949487|gb|ABD79502.1| diaminopimelate decarboxylase [Saccharophagus degradans 2-40]
Length = 414
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 227/392 (57%), Gaps = 14/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E + + + + P Y+YSK TR + Y AL ++ YA+KAN+N
Sbjct: 8 NGELFAEQCSLNAIADAL-GTPCYVYSKAAFTRAYQDYANALGNHPGMVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG G +VS ELR L+AG P + IF+G GK E++ A + G+ NV+S
Sbjct: 67 VLQVLAKLGAGFDIVSSGELRRVLKAGGQPNRIIFSGVGKTREEMREALEVGIACFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G ++ LR+NPDVD + HPY++TG K +KFGI ++ AV
Sbjct: 127 EAELERLADVAAELGVVASISLRVNPDVDAKTHPYISTGLKENKFGIDIQRAP----AVY 182
Query: 251 AHPNE---LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A +E LK+VG CH+GS +T++ F DA ++ +D + G +++L+IGGGLG+
Sbjct: 183 ARASELASLKVVGVDCHIGSQLTELTPFLDALDRLLQLVDTLAETGITIEHLDIGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y V P + + ++ + R L +I+EPGRS+ AN ++ V +K KNF
Sbjct: 243 TYRDE--VPPAVADYLTQIKAKLGDRKLAIIMEPGRSIAANAGVMLTEVEFLKPTEHKNF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+IDG+M + IRP+LY A+Q ++ +S ++ E ++D+VGPVCE+ DFL K+R L
Sbjct: 301 AIIDGAMNDNIRPALYQAWQDVKPLS--QREGETQQWDLVGPVCETGDFLAKDRALAL-Q 357
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + +GAY M+S YN + R E V
Sbjct: 358 AGDRLALMSSGAYGFVMSSNYNTRGRAAEVLV 389
>gi|365889985|ref|ZP_09428602.1| diaminopimelate decarboxylase [Bradyrhizobium sp. STM 3809]
gi|365334223|emb|CCE01133.1| diaminopimelate decarboxylase [Bradyrhizobium sp. STM 3809]
Length = 421
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 216/399 (54%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + ++ TV PFY YS + R+ + A G + +I YA+KAN+N
Sbjct: 8 DGVLHAEAVNLAELAATV-GTPFYCYSTATLERHYRVFADAFAGQDVLICYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L K G GA +VSG EL+ AL AG K +F+G GK +L A + +N++S
Sbjct: 67 VLRTLAKCGAGADVVSGGELKRALAAGIPSRKIVFSGVGKTEAELRAALSADIHCLNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G + +R+NPDVD H ++TG +KFGI + + A
Sbjct: 127 EPELDLLARLAVETGHTARISIRVNPDVDAGTHAKISTGKSENKFGIPLDHARRVY-ARA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A +K+ G H+GS IT + A ++ +++ +RA G ++ +++ GGGLGI Y+
Sbjct: 186 AKMKGIKVTGVDVHIGSQITDLGPMETAFRILADFVQTLRADGHDISHVDFGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P+P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 LDRTVPPEPAAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGEAKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V AP DA DVVGPVCES D+L +R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVKQAPPDAPAFVADVVGPVCESGDYLALDRALPEPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + +GAY A TYN + PE V+ S +I P
Sbjct: 366 LLAIMTSGAYGAVQACTYNTRALVPEVLVKGDQSAVIRP 404
>gi|452965462|gb|EME70485.1| diaminopimelate decarboxylase [Magnetospirillum sp. SO-1]
Length = 423
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 222/396 (56%), Gaps = 11/396 (2%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANN 128
A+G L EDV + + V PFY YS + R+ + +AL+ GL++ I +A KAN
Sbjct: 7 ANGELCAEDVAIARIAREV-GTPFYCYSTATLARHYTVFAEALKAAGLDATICFACKANP 65
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N ++ +LG GA +VS ELR AL AG + +F+G GK +L A +G+F +N
Sbjct: 66 NMAVIRTFAQLGAGADVVSEGELRQALAAGVPAARIVFSGVGKTRRELEFAVAKGIFQIN 125
Query: 188 VDSEFDLENI--VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
V+SE +LE + + ASR G + + +R+NPDVD H + TG K +KFGI + +
Sbjct: 126 VESEPELEMLSEIAASR--GLVMPIAIRVNPDVDAGTHAKITTGKKENKFGIEWTRAREV 183
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
KA P ++ VG CH+GS +T++ FR+A + + + + +RA G ++ L++GGGL
Sbjct: 184 YARAKALPG-IEPVGVACHIGSQLTELAPFREAFLRVRDLVAMLRADGIDIRRLDLGGGL 242
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y P+P + +R + + EPGR L+ N LV+ V VK T+
Sbjct: 243 GVPYDDE--TPPEPAAYAEAIRATLGDLGCRFVFEPGRLLVGNAGILVSRVIRVKEGSTR 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
F+++D +M +L+RPSLYDAY I V+ A +++ DVVGPVCE+ D ++R LP
Sbjct: 301 TFLIVDAAMNDLMRPSLYDAYHAILPVAEPEAGAALAEVDVVGPVCETGDTFARQRRLPP 360
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L AGAY +MASTYN + PE V+
Sbjct: 361 MRADDLLAFGTAGAYGAAMASTYNTRPLIPEVLVKG 396
>gi|83595885|gb|ABC25247.1| diaminopimelate decarboxylase [uncultured marine bacterium Ant4D3]
Length = 421
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 221/386 (57%), Gaps = 7/386 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED+ + + E P Y+YS+ + RN AY QALEG ++ YA+KAN+N +L
Sbjct: 15 LHAEDLDLNQIAEQF-GTPTYVYSRDTLERNYVAYSQALEGCEHLVCYAVKANSNIAVLN 73
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL L AG DP + +F+G GK ++ A + GV NV+SE +
Sbjct: 74 VLAQLGAGFDIVSVGELERVLVAGADPKRIVFSGVGKQTHEMQRALEVGVHCFNVESEAE 133
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + V LRINPDVD + HPY++TG K +KFGI ++ A
Sbjct: 134 LERLQNVAAGMNCIAPVSLRINPDVDAKTHPYISTGLKENKFGIGIDQAPAAYAQAAAMA 193
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +K++G CH+GS +T +D + DA + ID I AQG +++L++GGGLG+ Y
Sbjct: 194 H-IKVIGVDCHIGSQLTSIDPYLDAMDRLFGLIDTIAAQGIAIEHLDLGGGLGVCYGDEE 252
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + + VR + R L L+ EPGRS+ A+ L+ V +K N K F ++D +
Sbjct: 253 P--PAIADFMARVRAHLGDRKLALVFEPGRSICADAGVLLTRVEYIKNNQDKYFAIVDAA 310
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY A+Q I V+ +++ FD+VGP+CE++DFLGK+R L L
Sbjct: 311 MNDLIRPALYSAWQDIIPVN-LHSNSQAHNFDIVGPICETSDFLGKDRNLAIEANDL-LA 368
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V +GAY +MAS YN + R E V
Sbjct: 369 VCSSGAYGFAMASNYNSRNRAAEVMV 394
>gi|91975418|ref|YP_568077.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB5]
gi|91681874|gb|ABE38176.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB5]
Length = 421
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 220/400 (55%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + + + V PFY YS + R+ + +AL G+++++ YA+KAN+N
Sbjct: 8 DGVLHAEDVSLASIAQAV-GTPFYCYSTATLERHYRVFTEALSGVDALVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L KLG GA +VSG EL+ AL AG P K +F+G GK +L A A + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPPGKIVFSGVGKTEAELRAALAHDIKCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G+ + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLAVETGRIARISIRVNPDVDSGTHAKISTGKSENKFGIPIRHARDVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS I + A L+ ++ +R G + +++ GGGLGI YY
Sbjct: 187 KLPG-IQVTGVDVHIGSQIIDLAPMESAFRLVAEFVHVLRGDGHTISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
A P+P + + V+ + + L+ EPGR+++ N LV V VK K F+VI
Sbjct: 246 EDRAAPPEPFSYAEMVKRITHNLGCTLMFEPGRTIVGNAGILVAQVIYVKHGDGKTFVVI 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+AY I + PAP I+ DVVGPVCE+ D+L +R+LP G
Sbjct: 306 DAAMNDLIRPTLYEAYHEILPVAEPAPGVKMITG-DVVGPVCETGDYLALDRQLPELKSG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 365 DLIAIMTAGAYGAVQACTYNTRALVPEVLVKDDQYAVVRP 404
>gi|254282311|ref|ZP_04957279.1| diaminopimelate decarboxylase [gamma proteobacterium NOR51-B]
gi|219678514|gb|EED34863.1| diaminopimelate decarboxylase [gamma proteobacterium NOR51-B]
Length = 417
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 222/393 (56%), Gaps = 13/393 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K D L+CEDV + + E V P Y+YS+ I Y+ AL +I YA+KA
Sbjct: 3 FTYKND-VLHCEDVAISTIAEQV-GTPVYVYSRADIEAAFGEYQSALANRPHLICYAVKA 60
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP+K +F+G GK E + A G+
Sbjct: 61 NSNLAVLNLLARLGAGFDIVSEGELARVIAAGGDPSKVVFSGVGKSCEGIRQALDAGIRC 120
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + GK V LR+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 121 FNVESEAELNVLNEIAAECGKVAPVSLRVNPDVDANTHPYISTGLKENKFGVDIERAKDL 180
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ A + ++ VG CH+GS + + F DA ++ +D + + G + +L++GGGL
Sbjct: 181 YEQAAAM-SFIEPVGVDCHIGSQLLSITPFIDAVDRLLALVDALESSGITLKHLDLGGGL 239
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y A P I + + + R LI EPGRS++A LV V +K +
Sbjct: 240 GVQYGEEQA--PAISAYIAALTDRLGDREFELIFEPGRSVVAMAGALVTRVNYLKPTEHR 297
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEIS-KFDVVGPVCESADFLGKERELP 424
NF ++D +M +LIRP+LYDA+ I PA Q + + ++DVVGPVCE+ DFLGK+REL
Sbjct: 298 NFALVDAAMNDLIRPALYDAWMDI---LPATQRHDTAHRWDVVGPVCETGDFLGKDRELA 354
Query: 425 -TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
PD LVV AGAY MAS YN + RP E
Sbjct: 355 LQPDD--LLVVTGAGAYGFVMASNYNTRPRPAE 385
>gi|182677052|ref|YP_001831198.1| diaminopimelate decarboxylase [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182632935|gb|ACB93709.1| diaminopimelate decarboxylase [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 423
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/408 (36%), Positives = 225/408 (55%), Gaps = 7/408 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + +G ++ EDV ++ + ET+ PFY YS ITR+ E +K A G +S++ YA+
Sbjct: 2 HHFALR-NGVMHAEDVDLERLAETI-GTPFYCYSTATITRHYEVFKAAFAGQDSLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L +LG G +VS ELR A AG + F+G GK ++ LA EG+
Sbjct: 60 KANSNQAVLQTLARLGAGMDVVSEGELRRARAAGVPADRVTFSGVGKTEREIALALDEGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
F NV+SE +L I + K ++ LR+NPDVD + H +ATG +KFGI + +
Sbjct: 120 FCFNVESEPELAAISALAVARNKTAHIALRVNPDVDAKTHAKIATGKSENKFGIPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
K P + + G H+GS IT + F A ++ +RA G +D++++GG
Sbjct: 180 EVYRMAKNLPG-IAITGVDLHIGSQITDLTPFDHAFARAAEFVALLRADGHAIDHVDLGG 238
Query: 304 GLGIDYYHTG--AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GLGI Y H+G P +++ + L L++EPGR ++ N LV V VK
Sbjct: 239 GLGIPY-HSGDDPETYHPDLYAGIIKKRLGGLGLKLVLEPGRLIVGNAGVLVTRVLYVKQ 297
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
K F+++D +M +L+RP+LY+A+ I + P QDA D+VGPVCE+ D+L R
Sbjct: 298 GENKTFVIVDAAMNDLVRPTLYEAHHEIAPLRPPLQDAPGVVADIVGPVCETGDYLALAR 357
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P P G L + AGAY A TYN ++ PE V+ ++ P
Sbjct: 358 RMPEPRPGDYLAILSAGAYGAVQACTYNTRLLVPEVLVKGAAYAVVRP 405
>gi|315121839|ref|YP_004062328.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495241|gb|ADR51840.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 422
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/399 (35%), Positives = 227/399 (56%), Gaps = 5/399 (1%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ EDV ++ + +TV+ PFY Y+ I +N + +AL+G+N++I YA+KAN+N +
Sbjct: 9 GSLHAEDVSLEKISQTVQT-PFYCYATAAIEQNYLTFSRALDGMNTMICYAVKANSNQAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
++ L +LG G +VS EL AL A K +F+G GK + ++ LA Q G++ N++SE
Sbjct: 68 IQTLARLGSGLDIVSEGELHRALSAQVPAEKIVFSGVGKTISEMDLALQTGIYCFNIESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L + + GK + R+NPDV+ H ++TG K KFGI ++ D K
Sbjct: 128 SELITLNQRAISLGKIAPISFRVNPDVNANTHKKISTGKKEDKFGIPIHQIHSLYDYAKD 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
P +K+ G H+GS I +++ F A L+ K+R+ G + ++++GGGLGI Y H
Sbjct: 188 LPG-IKISGIDMHIGSQINQIESFCQAFKLLRETTLKLRSDGHNIQHIDVGGGLGITYCH 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+ P P + + + +I+EPGR L+A+ LV+ V VK + K FI++D
Sbjct: 247 SNPPPPSPSDYASLIHKYFGDLQCKIILEPGRFLVADAGILVSKVISVKKSTDKIFIILD 306
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEIS-KFDVVGPVCESADFLGKERELPTPDRGA 430
+M + +RP+LYDAY I+ +S +P++ + + D+VGP+CE+ DF+ R +P P G
Sbjct: 307 VAMNDFMRPTLYDAYHEIKYIS-SPEEGRLHVQADIVGPICETGDFIALNRTIPLPQAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY + TYN + PE V+ II P
Sbjct: 366 ILYIEKAGAYGAVQSGTYNSRRLIPEVMVKDSQFHIIRP 404
>gi|83748189|ref|ZP_00945216.1| Diaminopimelate decarboxylase [Ralstonia solanacearum UW551]
gi|83725157|gb|EAP72308.1| Diaminopimelate decarboxylase [Ralstonia solanacearum UW551]
Length = 419
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 223/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LR+NPDVD + HPY++TG K +KFG+ E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ +G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDGEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D + + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V A + +DVVGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHIVPVRERSGAATV--YDVVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|319407825|emb|CBI81478.1| Diaminopimelate decarboxylase [Bartonella sp. 1-1C]
Length = 423
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 226/406 (55%), Gaps = 5/406 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ E++ + + + V PFY YS + N E Y+QA + + S+I YA+
Sbjct: 2 HFFSYY-QGELHAENLSLSILAQKV-GTPFYCYSARTLITNFENYQQAFQDMPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL L + G GA +VS ELR AL AG + I++G GK ++++ A + +
Sbjct: 60 KANSNQAILRLLARSGAGADVVSEGELRRALAAGIPAHRIIYSGVGKTVKEIDFALTQNI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + + LRINPDVD + H + TG +KFGI +
Sbjct: 120 HCFNVESEPELEQLSARAAALSTTAPISLRINPDVDAKTHKKITTGKSENKFGIPLSSAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P+ L + G H+GS I + F DA ++ +++ ++ G+ + +++IGG
Sbjct: 180 EVYKKAAQLPS-LYICGVDIHIGSQICDLKPFEDAFLITADFVRQLWNDGYTITHVDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y +P P + VR+ + +N+I+EPGRS++ LV V +K
Sbjct: 239 GLGIPYGSEHHSVPSPFDYAALVRKHIAPLGINIILEPGRSIVGEAGILVTSVIHLKRGK 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF+++D +M + IRP+LY+A+Q++ LV D + D+VGPVCE+ D+LG R L
Sbjct: 299 ERNFVIVDAAMNDFIRPTLYEAWQNVLLVKEK-IDTPLINADIVGPVCETGDYLGLNRSL 357
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P +G LVV AGAY M++TYN ++ PE V+ + II P
Sbjct: 358 PLLSKGDLLVVTGAGAYGAVMSNTYNSRLLIPEVLVQDMRYAIIRP 403
>gi|304394204|ref|ZP_07376127.1| diaminopimelate decarboxylase [Ahrensia sp. R2A130]
gi|303293644|gb|EFL88021.1| diaminopimelate decarboxylase [Ahrensia sp. R2A130]
Length = 423
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 220/399 (55%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + E V PFY+YS +TR+ + A L++++ YA+KAN+N
Sbjct: 8 NGILHAEDVSLPRIAEEV-GTPFYVYSSATLTRHYTVFADAFSELDALVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+LE L +LG GA +VSG EL A RAG +K +F+G GK + ++ LA E + N++S
Sbjct: 67 VLETLARLGSGADVVSGGELTRARRAGIPASKIMFSGVGKTVAEMDLALGEEILCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK +V RINPDVD + ++TG K KFGI +E+
Sbjct: 127 EPELEMLSARAAAMGKTAHVSFRINPDVDAKTIEKISTGKKTDKFGIPHEEASRIYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT + F A + + + +R +G ++ ++++GGGLGI Y+
Sbjct: 187 ELPG-IKVTGIDMHIGSQITDLAPFDTAFGKLADLVGHLRGEGHDIQHVDVGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V++ V + +I EPGR + N V V VK ++F+++
Sbjct: 246 DDNNPPPNPDDYAAVVKKHVTGLDAKVIFEPGRLIAGNAGLFVTKVIYVKEGDARSFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP+LY+AY + V + DVVGPVCES D+L KERE+ P G
Sbjct: 306 DGAMNDLIRPTLYEAYHEVRSVDVNRGNGPRFTADVVGPVCESGDYLAKEREMQKPRPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ +I P
Sbjct: 366 LIALGSAGAYGAVQAGTYNTRALVPEVMVKGDQYHVIRP 404
>gi|395778840|ref|ZP_10459351.1| diaminopimelate decarboxylase [Bartonella elizabethae Re6043vi]
gi|423714688|ref|ZP_17688912.1| diaminopimelate decarboxylase [Bartonella elizabethae F9251]
gi|395417015|gb|EJF83367.1| diaminopimelate decarboxylase [Bartonella elizabethae Re6043vi]
gi|395430907|gb|EJF96935.1| diaminopimelate decarboxylase [Bartonella elizabethae F9251]
Length = 424
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/398 (35%), Positives = 224/398 (56%), Gaps = 3/398 (0%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G LY E + + + VE PFY YS + + Y++A +G+ S+I YA+KAN+N I
Sbjct: 9 GRLYAEGCSLAALAQEVET-PFYCYSANALITRFKDYQKAFQGMPSLIAYAVKANSNQAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L G GA +VS ELR AL G + +++G GK + ++ A + ++ NV+SE
Sbjct: 68 LRLLAANGAGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQNIYCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + K V LRINPDVD + H + TG +KFGI + +
Sbjct: 128 PELEQLSQRAVALSKTARVSLRINPDVDAKTHKKITTGKSENKFGIPLVLAREAYKKAAS 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
P L++ G H+GS I + F +A +L+ N + ++ + G+ + +++IGGGLGI Y
Sbjct: 188 LPG-LQICGIDMHIGSQICDLKPFEEAFLLIANCVRQLWSDGYAITHIDIGGGLGIAYGC 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P P N + V++ + +N+++EPGRS++ LV V +K +NF+++D
Sbjct: 247 EQHTVPSPFNYAELVKKHIAPLGINIVVEPGRSIVGQAGVLVTSVLYLKKGQGRNFVIVD 306
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDA+Q++ LV A + A + + D+VG VCE+ D+L +R LP G
Sbjct: 307 AAMNDLMRPTLYDAWQNVVLVKQAAKGAPLIRADIVGSVCETGDYLALDRCLPILAPGDL 366
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY MASTYN ++ PE V+ +I P
Sbjct: 367 VAITQAGAYGAVMASTYNSRLLIPEVLVQDTRYAVIRP 404
>gi|258405461|ref|YP_003198203.1| diaminopimelate decarboxylase [Desulfohalobium retbaense DSM 5692]
gi|257797688|gb|ACV68625.1| diaminopimelate decarboxylase [Desulfohalobium retbaense DSM 5692]
Length = 418
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 221/396 (55%), Gaps = 8/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K DG L E+ V ++ T P Y+YS + R+ A+ A EGL+ + ++
Sbjct: 2 HHFVYK-DGRLQAEEFDVAELAATY-GTPLYIYSTATLRRHYHAFDSAFEGLDHLTCFSA 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +G G +VSG EL AL+AG P K +++G GK ++ A + +
Sbjct: 60 KANSNLSVLRLLGDMGAGVDIVSGGELYRALKAGIAPEKIVYSGVGKQRHEIEQALEADI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ N +S +LE I ++ G + LRINPDVDPQ HPY++TG K +KFG+ E+ +
Sbjct: 120 LMFNCESVPELELINEVAQEKGLVARISLRINPDVDPQTHPYISTGLKKNKFGLNLEQSE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ P + +G CH+GS +T ++ F +A + + K++ G + YL++GG
Sbjct: 180 EAYRLARDLPG-VDPIGMDCHIGSQLTSIEPFLEALERLKRFYAKLQDMGLAIRYLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P+ L + + E + ++ LI+EPGR + N +V+ V KT+
Sbjct: 239 GLGITYDEE--TPPHPQQLGEALAESLKDLDVTLILEPGRVIAGNAGIMVSKVLYTKTSE 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F V+D +M +L+RPSLY AY + V+ PQ + D+VGP+CE+ DFL ++R L
Sbjct: 297 AKHFTVVDAAMNDLVRPSLYGAYHRLAEVT--PQKRQELPMDIVGPICETGDFLAQDRTL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P G + AGAY +MAS YN + R E V
Sbjct: 355 PELAPGECIAAFSAGAYGFTMASQYNSRPRAAEILV 390
>gi|86148171|ref|ZP_01066469.1| diaminopimelate decarboxylase [Vibrio sp. MED222]
gi|218710945|ref|YP_002418566.1| diaminopimelate decarboxylase [Vibrio splendidus LGP32]
gi|85834018|gb|EAQ52178.1| diaminopimelate decarboxylase [Vibrio sp. MED222]
gi|218323964|emb|CAV20326.1| Diaminopimelate decarboxylase [Vibrio splendidus LGP32]
Length = 417
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 226/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYQEDGQLWAEDVALSQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
K N L + G CH+GS +T ++ F DA ++ ID++RA + +L++GGGL
Sbjct: 183 YAFAKTLDN-LSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRANDINIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLDNHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRQGEAVTYDLVGPICETGDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSAGAYGFAMSSNYNTRSRAAEVMV 391
>gi|217979913|ref|YP_002364060.1| diaminopimelate decarboxylase [Methylocella silvestris BL2]
gi|217505289|gb|ACK52698.1| diaminopimelate decarboxylase [Methylocella silvestris BL2]
Length = 422
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/414 (34%), Positives = 224/414 (54%), Gaps = 20/414 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G LY E+V + + + V PFY YS ++R+ +K ALEG++S++ YA+
Sbjct: 2 HHFESE-NGVLYAENVDLAALADDVGT-PFYCYSSATLSRHYRVFKSALEGIDSLVCYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS ELR AL AG ++ F+G GK +++ A + G+
Sbjct: 60 KANSNQAVLTTLARLGAGMDVVSEGELRRALAAGAPASQITFSGVGKTKQEMAFALKAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
F NV+SE +L + + G + +R+NPDVD + H ++TG +KFG+ + +
Sbjct: 120 FCFNVESEPELLALSEVASAIGSTARIAIRVNPDVDAKTHAKISTGKSENKFGVPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN +K+ G H+GS IT ++ F + L ++ +RA G ++D++++GG
Sbjct: 180 EVYAEAGRLPN-IKVSGVDLHIGSQITDLEPFDASFKLAAGFVATLRADGHDIDHVDVGG 238
Query: 304 GLGIDY--------YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNH 355
GLGI Y YH P +R + ++ EPGR ++ N LV
Sbjct: 239 GLGIPYREGDDPASYH-------PDRYARILRARLGPLECRIVCEPGRLIVGNAGILVTR 291
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
V +K K F+++D +M +LIRP+LYDAY I V P EI DVVGPVCE+ D
Sbjct: 292 VLYLKRGEAKTFVIVDAAMNDLIRPTLYDAYHEIRPVRPRADAPEILA-DVVGPVCETGD 350
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+L R++ P G L + AGAY + +STYN ++ PE V ++ P
Sbjct: 351 YLALGRKMAAPQPGDLLAIMSAGAYGATQSSTYNSRLLIPEVLVNGAAYAVVRP 404
>gi|407771611|ref|ZP_11118965.1| diaminopimelate decarboxylase [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285405|gb|EKF10907.1| diaminopimelate decarboxylase [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 421
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/401 (37%), Positives = 225/401 (56%), Gaps = 8/401 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + ++ E V PFY YS + R+ Y A +GL++ + YAIKAN+N
Sbjct: 8 DGVLHAEGVSIPELAEKV-GTPFYCYSTATLERHYHVYASAFDGLDATVCYAIKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L KLG GA +VS E+R ALRAG P K IF+G GK ++ A + +NV+S
Sbjct: 67 VLKTLAKLGAGADVVSVGEMRRALRAGVAPGKVIFSGVGKADAEMREALDADIAQINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+LE + + GKK + +RINP VD + H +ATG +KFGI ++ + +
Sbjct: 127 IPELEELNRVALDMGKKARIAIRINPHVDAKTHEKIATGKAENKFGIDWTRAIEVY--RM 184
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A + + + G H+GS +T + FR+A + + ++K+RA+G + L++GGGLGI Y
Sbjct: 185 AAAMDGIDVTGIAMHIGSQLTDLAPFREAFTRLADLVEKLRAEGINIRNLDLGGGLGIAY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
G P P VRE V ++ +EPGR + N +++ V +K K F++
Sbjct: 245 --QGETPPLPDAYGQMVRETVGHLGCHITLEPGRLIAGNAGVMISRVMYIKDGEAKRFVI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +LIRP+LY+AY I V + + + D+VGPVCE+ D GK+R+LP +
Sbjct: 303 LDAAMNDLIRPTLYNAYHEIIPVDEQGEGDKQATVDIVGPVCETGDTFGKDRKLPDDLKP 362
Query: 430 AGLV-VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
LV V AGAY M+STYN + PE V+ I+ P
Sbjct: 363 GDLVAVMSAGAYGAVMSSTYNTRALTPEVLVKGDEFAIVRP 403
>gi|387126534|ref|YP_006295139.1| diaminopimelate decarboxylase [Methylophaga sp. JAM1]
gi|386273596|gb|AFI83494.1| Diaminopimelate decarboxylase [Methylophaga sp. JAM1]
Length = 417
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/399 (36%), Positives = 227/399 (56%), Gaps = 10/399 (2%)
Query: 63 VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGY 122
++ F++K G LY E + D+ P Y+YS+ + ++ +A+ A ++ Y
Sbjct: 1 MQDYFTQK-HGELYAEQQSLMDLAAQF-GTPTYVYSRAGLEQHWKAFDDAFSAYPHLVCY 58
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+KAN+N +L L +LG G +VS EL + AG K +F+G GK +E++ A +
Sbjct: 59 AVKANSNLAVLNVLARLGSGFDIVSAGELARVIAAGGQAEKTVFSGVGKTVEEIDYALKT 118
Query: 183 GV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NE 240
G+ NV+S +L+ I + GK + +R+NPDVD Q HPY++TG K +KFGI ++
Sbjct: 119 GIRCFNVESISELQRISDVAVNLGKTAPISIRVNPDVDAQTHPYISTGLKENKFGIAIDD 178
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L + AV + PN L+++G CH+GS +T V F DA ++ ID + Q + +L+
Sbjct: 179 ALAVYQQAV-SLPN-LQVIGVDCHIGSQLTSVSPFVDALERVLALIDALAEQDIHIKHLD 236
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
IGGGLGI Y P P ++ L+ R+L +++EPGR++ N L+ V +K
Sbjct: 237 IGGGLGICYRDEKP--PTPAEYAKAMQALLKDRDLEIMLEPGRAIAGNAGVLLTKVEYIK 294
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +L+RP+LY ++ IE V P +AE FD+VGPVCE+ DFLGK+
Sbjct: 295 VTEAKNFAIVDAAMNDLLRPALYQSWMAIEAVKPRIDEAE-QNFDIVGPVCETGDFLGKD 353
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L G L + AGAY +M+S YN + R E V
Sbjct: 354 RSLAI-QSGDLLAIRSAGAYGFTMSSNYNSRPRAAEIMV 391
>gi|28867457|ref|NP_790076.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28850691|gb|AAO53771.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 415
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAFADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
H P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 HEEP--PLAGDYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|221134092|ref|ZP_03560397.1| putative diaminopimelate decarboxylase [Glaciecola sp. HTCC2999]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 231/405 (57%), Gaps = 12/405 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +G L+ E+V + D+ P Y+YS+ + R+ + +AL ++ +A+KA
Sbjct: 3 FFDYQNGTLHAENVALHDIAAK-HGTPTYVYSRKTLERHWHKFDEALGDHPHLVCFAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L KLG G +VSG EL+ + AG DP K +F+G GK +++ A Q+ +
Sbjct: 62 NSNIGVLSVLAKLGSGFDIVSGGELKRVIAAGGDPQKVVFSGVGKTADEIEFALQQNILC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQW 244
NV+S +L+ I + + + LRINPDVD HPY++TG K +KFGI + K ++
Sbjct: 122 FNVESFAELDRINAVAAKLDRPARISLRINPDVDANTHPYISTGLKANKFGIAHTKAVET 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+L A E+K G CH+GS +T+ F DA ++ +D++ +++L++GGG
Sbjct: 182 YLYAKALSYLEIK--GMDCHIGSQLTETAPFVDALERLLGLVDELATHDIHIEHLDVGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
LG+ Y P P + + + R ++ +I+EPGR++ AN L+ V +K N
Sbjct: 240 LGVTY--ANETPPLPSEYASAIAQKMQGREHMKIIMEPGRAIAANAGVLLTKVEFLKQNE 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F +ID +M +L+RP+LY A+Q+I ++P D + +DVVGPVCE+ DFLGK+REL
Sbjct: 298 DKHFAIIDAAMNDLLRPALYSAWQNIVPITPR-DDVAAAVYDVVGPVCETGDFLGKDREL 356
Query: 424 P-TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
PD L V AGAY MAS YN + RP E V I++
Sbjct: 357 AIVPDD--ILAVKSAGAYGFVMASNYNTRARPAEIMVDGDHVIVV 399
>gi|384423473|ref|YP_005632831.1| diaminopimelate decarboxylase [Vibrio cholerae LMA3984-4]
gi|327483026|gb|AEA77433.1| Diaminopimelate decarboxylase [Vibrio cholerae LMA3984-4]
Length = 417
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELLRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 391
>gi|427399551|ref|ZP_18890789.1| diaminopimelate decarboxylase [Massilia timonae CCUG 45783]
gi|425721313|gb|EKU84226.1| diaminopimelate decarboxylase [Massilia timonae CCUG 45783]
Length = 425
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 231/401 (57%), Gaps = 18/401 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
FS + DG L+ E+V + + E P Y+YSK + N AY A +G ++++ YA+KA
Sbjct: 4 FSHQ-DGVLHAENVSLSAIAEQF-GTPTYVYSKAALLENFSAYHDACQGRDALVCYAMKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L+ L + G G +VSG EL + AG DP K IF+G GK +E++ LA ++G+
Sbjct: 62 NSNLAVLDLLARQGAGFDIVSGGELLRVIAAGGDPGKTIFSGVGKTVEEMQLALEKGILC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244
NV+S +L + + G + V LR+NP+VD + HPY+ATG K +KFG+ ++ L
Sbjct: 122 FNVESIPELHRLNEVAGKLGMRAPVSLRVNPNVDAKTHPYIATGLKANKFGVAFDDALDT 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ A A L +VG CH+GS + +A ++ ID + A+G + +L+IGGG
Sbjct: 182 YRTA--ASLPHLDVVGIDCHIGSQLLDDAPLLEALDKLIELIDTLHAEGTHLHHLDIGGG 239
Query: 305 LGIDYYHTGAVLPKPRN--------LIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNH 355
+G+DY G P P ID R E + + +I EPGRS++AN L+
Sbjct: 240 IGVDYGVAGDKPPVPVGDYLGRLFKRIDAWRAEKHGGQPIKVIFEPGRSIVANAGVLLTK 299
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
+K KNF ++D +M +L+RP+LY A+ ++ V+ P+D E +D+VGPVCES D
Sbjct: 300 TEFLKPGAEKNFCIVDAAMNDLMRPTLYQAWMGVQPVT--PRDGEKLVWDIVGPVCESGD 357
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+L +EREL + G L + AGAY M+MAS YN + R E
Sbjct: 358 WLARERELAL-EPGDLLAIMTAGAYGMTMASNYNTRGRAAE 397
>gi|254483250|ref|ZP_05096482.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2148]
gi|214036473|gb|EEB77148.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2148]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 222/389 (57%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ ED V D+ + P Y+YS+ + Y+ AL G ++ YA+KAN+N
Sbjct: 8 DGELFAEDTSVSDIADRF-GTPCYIYSRAGLEGAFRQYQDALAGCEHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS EL + AG DP K +F+G GK +++ A + + N++S
Sbjct: 67 VLDTLARLGAGFDIVSAGELHRVIAAGGDPGKVVFSGVGKKPDEMAQALELDIACFNLES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + AGK V +R+NPDVD Q HPY++TG + +KFG+ E+
Sbjct: 127 AAELEVLAGVAAHAGKTARVSVRVNPDVDAQTHPYISTGLRENKFGVTMEEALLVYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN +++VG CH+GS +T++ F DA ++ ID++ QG + +L++GGGLG+ Y
Sbjct: 187 KLPN-IEVVGVDCHIGSQLTQISPFIDALKRLLALIDELAEQGIVLRHLDLGGGLGVCYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + VRE + R L L+ EPGRS+ AN L+ V +KT NF ++
Sbjct: 246 DEEP--PSIAQYVAAVREELGDRPLQLVFEPGRSIAANAGLLLTTVEYLKTTPDHNFALV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M ++IRP+LY A+ I + + + +DVVGPVCE+ DFLGK+R+L + +G
Sbjct: 304 DAAMNDMIRPALYQAWLDIR-NTRENNVGQSASWDVVGPVCETGDFLGKQRQL-SLQQGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY +M+S YN + R E V
Sbjct: 362 LLALFGAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|358011832|ref|ZP_09143642.1| diaminopimelate decarboxylase [Acinetobacter sp. P8-3-8]
Length = 414
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/399 (37%), Positives = 230/399 (57%), Gaps = 7/399 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L+ E ++ + + P Y+YSK ++ +A + ++ I YA+K+N+N
Sbjct: 5 RIDGVLHAEQCSLEQLAQQY-GTPLYVYSKATFEKHYLDMDKAFDFIDHQICYAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG +P+K +F+G GK D+ A + G+ NV
Sbjct: 64 LAVLNVLAKLGSGFDIVTGGELARVLAAGGEPSKIVFSGLGKQEADIQKALEVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK V LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAQLGKKAPVSLRVNPDVDAKTHPYISTGLKENKFGIPSDAVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA +++ ID+++A + +++IGGGLG+
Sbjct: 184 AASLPN-LDVVGIDCHIGSQLTETQPFVDALDRVMSMIDQLKALDIHLQHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y V P + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDEVPPTVAEYANAMRPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTVHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I++V+P Q E +D+VGP+CESADF+GKEREL +
Sbjct: 301 LIDAAMNDLIRPALYEAWMDIQVVAPKAQ-VETKTWDLVGPICESADFIGKERELAIQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V + S +I
Sbjct: 360 DY-LAVLGAGAYGFVMSSNYNTRGRAAEVMVDADQSHLI 397
>gi|49474787|ref|YP_032829.1| diaminopimelate decarboxylase [Bartonella quintana str. Toulouse]
gi|49240291|emb|CAF26766.1| Diaminopimelate decarboxylase [Bartonella quintana str. Toulouse]
Length = 424
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 223/405 (55%), Gaps = 5/405 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + + V PFY YS + + Y+ A + S+I YA+KA
Sbjct: 3 FFSYNQGVLHAEGLSLSALAQDV-GTPFYCYSANALVTRFKDYQNAFRDMPSLIAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCI-FNGNGKLLEDLVLA-AQEGV 184
N+N +L+ L G GA +VS ELR AL AG P CI ++G GK ++++ A A +
Sbjct: 62 NSNQAVLQLLAANGAGADVVSEGELRRALAAGI-PAHCIVYSGVGKTVKEIDFALAHDIC 120
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+SE +LE + + K + LRINPDVD + H + TG +KFGI L W
Sbjct: 121 CFNVESEPELEQLSARAVAFSKTARISLRINPDVDAKTHKKITTGKYENKFGI-PLSLAW 179
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ A + + G H+GS I + F DA +++ +++ + + G+ + +++IGGG
Sbjct: 180 DVYKKAAQLPGIHVCGVDMHIGSQICDLKPFEDAFLIVADFVRHLSSSGYALTHVDIGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LGI Y H +P + V+ + L +I+EPGRS+I LV V +K
Sbjct: 240 LGIAYGHEQHSVPSLFDYAALVKRHIAPLGLKIIVEPGRSIIGEAGVLVTSVIYLKRGEG 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF+V+D +M +LIRP+LYDA+Q++ LV AP+DA + D+VG VCE+ D+L +R +P
Sbjct: 300 RNFVVVDAAMNDLIRPTLYDAWQNVLLVKQAPEDASFIRADIVGSVCETGDYLALDRRVP 359
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY MASTYN ++ PE V+ II P
Sbjct: 360 ILAAGDLLAITGAGAYSAVMASTYNSRLLVPEVLVQDTRYAIIRP 404
>gi|423711853|ref|ZP_17686158.1| diaminopimelate decarboxylase [Bartonella washoensis Sb944nv]
gi|395412701|gb|EJF79181.1| diaminopimelate decarboxylase [Bartonella washoensis Sb944nv]
Length = 426
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 220/402 (54%), Gaps = 7/402 (1%)
Query: 74 FLYCEDVRVQDVMETVE-----KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
F Y +DV + + +E PFY YS I + + Y+ A + S+I YA+KAN+
Sbjct: 4 FSYHQDVLQAEGLSLLELSRDVGTPFYCYSAGAIVAHFKDYQDAFRDMPSLIAYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +L+ L G GA +VS ELR L G + +++G GK + ++ A + ++ N
Sbjct: 64 NQAVLQILANNGAGADVVSEGELRRVLAVGIPAQRIVYSGVGKTVREIDFALAQDIYCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + + K + LRINPDVD + H + TG +KFGI L W
Sbjct: 124 VESEPELEQLSARAVALTKTARISLRINPDVDAKTHKKITTGKSENKFGI-PLSLAWDTY 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A L + G H+GS I + F DA ++ +++ ++ G + +++IGGGLGI
Sbjct: 183 KKAAQLPGLCVCGVDLHIGSQICDLKPFEDAFIIAADFVRQLWNDGHVITHIDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + ++P P + V++ + +N+++EPGRS++ LV V +K +NF
Sbjct: 243 PYGYEQHLVPSPFDYAALVKKYIAPLGINIVLEPGRSIVGEAGVLVTSVVYLKKGEGRNF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M + +RP+LYDA+Q++ V P DA + D+VGPVCE+ D+LG ER LP
Sbjct: 303 VIVDAAMNDFMRPTLYDAWQNVMPVKKTPIDAPLINADIVGPVCETGDYLGLERSLPVLK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY MASTYN ++ PE V+ + +I P
Sbjct: 363 AGDVLAITGAGAYGAVMASTYNSRLLVPEVLVQDMRYAVIRP 404
>gi|395780550|ref|ZP_10461012.1| diaminopimelate decarboxylase [Bartonella washoensis 085-0475]
gi|395418896|gb|EJF85213.1| diaminopimelate decarboxylase [Bartonella washoensis 085-0475]
Length = 426
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 220/402 (54%), Gaps = 7/402 (1%)
Query: 74 FLYCEDVRVQDVMETVE-----KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
F Y +DV + + +E PFY YS I + + Y+ A + S+I YA+KAN+
Sbjct: 4 FSYHQDVLQAEGLSLLELSRDVGTPFYCYSAGAIVAHFKDYQDAFRDMPSLIAYAVKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +L+ L G GA +VS ELR L G + +++G GK + ++ A + ++ N
Sbjct: 64 NQAVLQILANNGAGADVVSEGELRRVLAVGIPAQRIVYSGVGKTVREIDFALAQDIYCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + + K + LRINPDVD + H + TG +KFGI L W
Sbjct: 124 VESEPELEQLSARAVALTKTARISLRINPDVDAKTHKKITTGKSENKFGI-PLSLAWDTY 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A L + G H+GS I + F DA ++ +++ ++ G + +++IGGGLGI
Sbjct: 183 KKAAQLPGLCVCGVDLHIGSQICDLKPFEDAFIIAADFVRQLWNDGHVITHIDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + ++P P + V++ + +N+++EPGRS++ LV V +K +NF
Sbjct: 243 PYGYEQHLVPSPFDYAALVKKYIAPLGINIVLEPGRSIVGEAGVLVTSVVYLKKGEGRNF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M + +RP+LYDA+Q++ V P DA + D+VGPVCE+ D+LG ER LP
Sbjct: 303 VIVDAAMNDFMRPTLYDAWQNVMPVKKTPIDAPLINADIVGPVCETGDYLGLERSLPVLK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY MASTYN ++ PE V+ + +I P
Sbjct: 363 AGDVLAITGAGAYGAVMASTYNSRLLVPEVLVQDMRYAVIRP 404
>gi|423014729|ref|ZP_17005450.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans AXX-A]
gi|338782345|gb|EGP46720.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans AXX-A]
Length = 430
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 148/402 (36%), Positives = 232/402 (57%), Gaps = 17/402 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + + LY EDV + + E + P Y+YS+ + E Y+ A+ + Y +
Sbjct: 14 HPFFQYRNNVLYAEDVPLDHLAEKLGT-PLYVYSRAALKAAWETYRSAVGQRPVQVCYGM 72
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ +LG G +VSG EL AL G DP + +F+G GK ++ A GV
Sbjct: 73 KANSNLAVLKEFARLGAGFDIVSGGELERALAVGADPARIVFSGVGKQAWEMRAALAAGV 132
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L+ + ++ G++ V LR+NPDVD Q HPY++TG K +KFGI +
Sbjct: 133 MCFNVESEAELQRLSDVAQETGQRARVALRVNPDVDAQTHPYISTGLKENKFGI---PIG 189
Query: 244 WFLDAVKAH---PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
LDA ++ P L++ G CH+GS +T + + DA +++ + + G + +L+
Sbjct: 190 AALDAYRSARLLPG-LEITGLDCHIGSQLTDISPYFDALEKLLDLVADLDDIGIRLSHLD 248
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVT 357
+GGGLGI Y + V P P+ L+D V + + +R +L L++EPGRSL+ N L+ V
Sbjct: 249 LGGGLGIRY--SDEVPPSPKALLDHVFQRLQARGQGHLRLVLEPGRSLVGNAGVLLTAVQ 306
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K +NF ++D +M +L+RP+LYDA+ + + P D ++DVVGPVCESAD+L
Sbjct: 307 YLKHGEARNFAIVDAAMNDLLRPALYDAWHGLRPLRPRAGD--TLEYDVVGPVCESADWL 364
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++R L ++G L + AGAY M+MA YN + R E V
Sbjct: 365 ARQRAL-VLEQGDVLALESAGAYGMTMAGNYNTRPRAAEVMV 405
>gi|253997642|ref|YP_003049706.1| diaminopimelate decarboxylase [Methylotenera mobilis JLW8]
gi|253984321|gb|ACT49179.1| diaminopimelate decarboxylase [Methylotenera mobilis JLW8]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 225/387 (58%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V + + E P Y+YSK +++ E + + N ++ +A+K+N + IL
Sbjct: 11 LHAENVALTQITENF-GSPCYVYSKAALSQAFERFSAGFKDANHLVCFAVKSNPSLAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
KLG G +VSG EL + AG DP K +F+G GK E++ A + G+F NV+S +
Sbjct: 70 LFAKLGAGFDIVSGGELARVIAAGGDPKKVVFSGVGKTAEEMRAALEAGIFCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAH 252
L + + GK V LR+NP+VD + HPY++TG KN+KFG+ E L +L A A
Sbjct: 130 LIRLNDVAAYMGKIAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEDALDIYLQA--AE 187
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ + + G CH+GS IT++ F DA ++ +D + ++ ++++GGG+GI Y +
Sbjct: 188 MSNIAIHGVDCHIGSQITELSPFLDAFDRVLALVDALAENNIQIQHIDLGGGIGICY--S 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P+ +RE + +R++ L+ EPGR+L+ N L+ V +K +KNF ++D
Sbjct: 246 DETPPEFTAYAKAMREKLGNRDVKLVFEPGRALVGNAGVLLTKVEYLKPTESKNFAIVDA 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDAY I+ V AP++ +++VGPVCES DFLG +R L + G L
Sbjct: 306 AMNDLMRPALYDAYHDIQAV--APRNEAAVNYEIVGPVCESGDFLGHDRNLALQE-GDLL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MSM+S YN + R E V
Sbjct: 363 AIMSAGAYGMSMSSNYNTRPRAAEVMV 389
>gi|239814143|ref|YP_002943053.1| diaminopimelate decarboxylase [Variovorax paradoxus S110]
gi|239800720|gb|ACS17787.1| diaminopimelate decarboxylase [Variovorax paradoxus S110]
Length = 427
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 230/405 (56%), Gaps = 21/405 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E + ++ + P ++YSK + + AY++ EG +++I YA+KAN++
Sbjct: 18 DGALHVEGLGLE-ALAREHGTPLFVYSKQWMLDALAAYQRGFEGRSALICYAMKANSSLG 76
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
+L + GCG +VSG EL L G DP + IF+G GK ++ A G+ NV+S
Sbjct: 77 VLRVFAEAGCGFDIVSGGELARVLAVGADPARIIFSGVGKTRAEMRQALAAGIACFNVES 136
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G++ + +RINP+VDP+ HPY++TG K +KFGI +++ AV+
Sbjct: 137 EAELDVLNEVALAEGRRAPISIRINPNVDPKTHPYISTGLKGNKFGIAHDR------AVE 190
Query: 251 AHPNE-----LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ + L++VG CH+GS IT+ + DA +++ ++ I A G + +L+ GGGL
Sbjct: 191 AYRHAARLPGLEVVGIDCHIGSQITEASPYLDACDRVLDLVEAIEAAGVPIHHLDFGGGL 250
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTN 362
GIDY G V PK L + + +R L+IEPGRSL+ N + V K
Sbjct: 251 GIDY--NGEVPPKADALWQQLLARLDARGFGQRKLVIEPGRSLVGNAGVCLTEVLYTKPG 308
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF ++D +M +L RP++Y A+Q I + DA +DVVGPVCES D++G++R
Sbjct: 309 EDKNFCIVDAAMNDLPRPAMYQAFQKIVPLRIRAGDA--PTYDVVGPVCESGDWIGRDRA 366
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L G L V AGAYCMSMAS YN + R E V + +I
Sbjct: 367 LNVVS-GDLLAVLSAGAYCMSMASNYNTRGRAAEVLVSGRSATLI 410
>gi|421890488|ref|ZP_16321347.1| Diaminopimelate decarboxylase [Ralstonia solanacearum K60-1]
gi|378964199|emb|CCF98095.1| Diaminopimelate decarboxylase [Ralstonia solanacearum K60-1]
Length = 419
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 149/393 (37%), Positives = 223/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A E N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRTALTANYRAYAAACEDRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LR+NPDVDP+ HPY++TG K +KFG+ E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRVNPDVDPKTHPYISTGLKGNKFGVAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L +VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LCVVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D V + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARTLLDRVEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V A + +DVVGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHIVPVRERGGAATV--YDVVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|343507056|ref|ZP_08744506.1| diaminopimelate decarboxylase [Vibrio ichthyoenteri ATCC 700023]
gi|342800690|gb|EGU36203.1| diaminopimelate decarboxylase [Vibrio ichthyoenteri ATCC 700023]
Length = 417
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + D+ E P Y+YS+ + R+ A+ +A+ ++ +A+KA
Sbjct: 4 FNYQDDGQLWAEEVPLSDLAEQF-GTPLYVYSRATLERHWHAFDKAVGEHPHLVCFAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNTLARLGSGFDIVSGGELERVIAAGGEPSKVVFSGLGKTEAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K V LRINPDVD Q HPY++TG + +KFGI ++
Sbjct: 123 FNVESEPELERLNQVAAELGVKAPVSLRINPDVDAQTHPYISTGLRENKFGIAFDRAPVV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID+++A+G + +L++GGGL
Sbjct: 183 YELATQLTN-LDVKGIDCHIGSQLTDLEPFIDATDRLLALIDELKAKGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLDNHLDLELIFEPGRAICANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +L+RP+LY A+Q I V P+D E + +DVVG +CE++DFLGK+R L
Sbjct: 300 KNFAIVDAAMNDLMRPALYQAWQDI--VPVNPRDGEATDYDVVGAICETSDFLGKDRSL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
T + L + AGAY M+S YN + R E V
Sbjct: 357 TLEPSDLLAIRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|334702883|ref|ZP_08518749.1| diaminopimelate decarboxylase [Aeromonas caviae Ae398]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 155/398 (38%), Positives = 239/398 (60%), Gaps = 15/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E + +Q + + P Y+YS+ + R+ A+ QA + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQLPLQQLADQY-GTPLYVYSRATLERHWHAFDQAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA ++ +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALEKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-- 243
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E+
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAI 182
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ A AH +++ G CH+GS +T+++ F +AA ++ ID++ A+G + +L++GG
Sbjct: 183 YRKAATMAH---IEIKGVDCHIGSQLTELNPFMEAADKLLKLIDELAAEGIHIHHLDVGG 239
Query: 304 GLGIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GLG++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K
Sbjct: 240 GLGVNY---GAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEFLKPG 296
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
T+NF +ID M +L+RPSLY A+ + IE+ S A E + +DVVGPVCE+ DFLGKER
Sbjct: 297 ETRNFALIDAGMNDLLRPSLYGAWMNIIEVDSRATH--EKALYDVVGPVCETGDFLGKER 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + G+ L V AGAY +M+S YN + R E V
Sbjct: 355 TLAIAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|144899443|emb|CAM76307.1| Diaminopimelate decarboxylase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 421
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 219/392 (55%), Gaps = 7/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANNN 129
+G L E V V ++ V PFY YS + R+ + QAL GL++ + +A+KAN N
Sbjct: 8 NGQLQAEQVPVAEIAAQV-GTPFYCYSTATLVRHYTVFTQALAEAGLDAQVCFALKANPN 66
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
++ +LG GA +VS ELR AL AG + +F+G GK +L A +G+ +NV
Sbjct: 67 VAVVRTFAQLGAGADVVSEGELRRALAAGVPVDRIVFSGVGKTEAELTFAVAKGIMQINV 126
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+SE +LE + + G ++ + LR+NPDVD H + TG K +KFGI + +
Sbjct: 127 ESEPELEALSKIAAARGIRMPIALRVNPDVDAGTHAKITTGKKENKFGIEWTRAHEVYNK 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+A P +++VG CH+GS +T V+ FR A + + + + +RA GF + L++GGGLGI
Sbjct: 187 ARALPG-IEVVGIACHIGSQLTDVEPFRQAFLRVRDLVAMLRADGFNIRRLDLGGGLGIP 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P P +++ + +++EPGR L+ N LV+ V VK T+ F+
Sbjct: 246 YESEEP--PHPAVYAKAIKDTLGDLGCKIVLEPGRLLVGNAGILVSRVVYVKEGATRTFL 303
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ D +M +L+RP+LY+A+ IE V +DA DVVGPVCE+ D K+R LP
Sbjct: 304 IADAAMNDLMRPALYEAHHTIEPVIEPAKDAPRLPVDVVGPVCETGDTFAKQRSLPPIKA 363
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G +V AGAY +M+STYN + PE V+
Sbjct: 364 GDLIVFRTAGAYGAAMSSTYNTRPLVPEVLVK 395
>gi|343513421|ref|ZP_08750524.1| diaminopimelate decarboxylase [Vibrio sp. N418]
gi|342802214|gb|EGU37654.1| diaminopimelate decarboxylase [Vibrio sp. N418]
Length = 417
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + D+ E P Y+YS+ + R+ A+ +A+ ++ +A+KA
Sbjct: 4 FNYQDDGQLWAEEVPLSDLAEQF-GTPLYVYSRATLERHWHAFDKAVGEHPHLVCFAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNTLARLGSGFDIVSGGELERVIAAGGEPSKVVFSGLGKTEAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K V LRINPDVD Q HPY++TG + +KFGI ++
Sbjct: 123 FNVESEPELERLNKVAAELGVKAPVSLRINPDVDAQTHPYISTGLRENKFGIAFDRAPVV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L + G CH+GS +T ++ F DA ++ ID+++++G + +L++GGGL
Sbjct: 183 YELAVQLPH-LDVKGIDCHIGSQLTDLEPFIDATDRLLALIDELKSKGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLDNHQDLELIFEPGRAICANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+D E +DVVG +CE++DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVKPRDGEAKDYDVVGAICETSDFLGKDRSLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 358 LEPNDL-LAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|117620267|ref|YP_855006.1| diaminopimelate decarboxylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561674|gb|ABK38622.1| diaminopimelate decarboxylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 416
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 234/403 (58%), Gaps = 9/403 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEHTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E+
Sbjct: 123 FNLESEAELERLNRVAGGMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + +G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAVEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K T
Sbjct: 242 GVNY---GAEQPPHPSEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGET 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF +ID M +L+RPSLY A+ +I V E + +DVVGPVCE+ DFLGKER L
Sbjct: 299 RNFALIDAGMNDLLRPSLYGAWMNIIEVDSRTAH-EPALYDVVGPVCETGDFLGKERTLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G+ L V AGAY +M+S YN + R E V S +I
Sbjct: 358 IAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLVDGAQSFLI 399
>gi|343500733|ref|ZP_08738622.1| diaminopimelate decarboxylase [Vibrio tubiashii ATCC 19109]
gi|418478535|ref|ZP_13047638.1| diaminopimelate decarboxylase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819842|gb|EGU54676.1| diaminopimelate decarboxylase [Vibrio tubiashii ATCC 19109]
gi|384573887|gb|EIF04371.1| diaminopimelate decarboxylase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 417
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + ++ + P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLTELAQQF-GTPLYVYSRATLERHWHAFDKSVGQHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNALARLGSGFDIVSGGELERVIAAGGEPSKVVFSGVGKTAAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ N L + G CH+GS +T ++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLEN-LNVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGITIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPEPSDYAKALLGRLDNHQDLELIFEPGRAIAANAGLLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVVPREGEAVTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN + R E V
Sbjct: 358 LQENDL-LAVRSAGAYGFVMSSNYNTRCRAAEVMV 391
>gi|11498406|ref|NP_069634.1| diaminopimelate decarboxylase [Archaeoglobus fulgidus DSM 4304]
gi|8134392|sp|O29458.1|DCDA_ARCFU RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|2649806|gb|AAB90438.1| diaminopimelate decarboxylase (lysA) [Archaeoglobus fulgidus DSM
4304]
Length = 419
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 226/401 (56%), Gaps = 26/401 (6%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+DG L E V+V +++ P Y+ S+ + RN+EAYK+A N + YA+KANNN
Sbjct: 5 SDGILTVEGVKVTEIVRET-GTPVYVTSRALLERNLEAYKKAFS--NEGLLYAVKANNNL 61
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDS 190
++ + G GA + S EL LA AGF +FNGN K +++ + GV +VDS
Sbjct: 62 ALMRIIASHGFGADVFSDGELYLASLAGFRKDMVLFNGNSKSRKEIEMGVTAGVKFSVDS 121
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I ++ GK+V + R+NPDVDP+ HP +ATG + SKFGI +E ++ +
Sbjct: 122 LDELRTISKIAKEVGKEVEIAFRVNPDVDPKTHPKIATGLRESKFGIPHEMVR------E 175
Query: 251 AHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ LKL VG HCH+GS I + F A +++ I G E+ ++++GGGL
Sbjct: 176 AYEMALKLDGVVPVGIHCHIGSQILDLSPFVHALNKVMDIAVDIEKLGVELSFVDMGGGL 235
Query: 306 GIDYYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
GIDY GA P P++L + R+ L+ + L +EPGRS++ NT L+ V V
Sbjct: 236 GIDYEGKGA--PTPKDLASAILPEFEGRKADLTSDPQLWLEPGRSIVGNTTVLITRVNAV 293
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLG 418
K G KNF+ +D LIRP++Y +Y + + + DAE + + VVGP+CES D L
Sbjct: 294 K-KGYKNFVAVDAGFNVLIRPAMYGSYHRVAVAN--KMDAEPEEVYTVVGPICESGDVLA 350
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++R+LP + G + V DAGAY M+S YN + R E V
Sbjct: 351 RDRKLPKVEVGDLIAVFDAGAYGFVMSSQYNGRPRCAEVLV 391
>gi|297570155|ref|YP_003691499.1| diaminopimelate decarboxylase [Desulfurivibrio alkaliphilus AHT2]
gi|296926070|gb|ADH86880.1| diaminopimelate decarboxylase [Desulfurivibrio alkaliphilus AHT2]
Length = 430
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 154/402 (38%), Positives = 214/402 (53%), Gaps = 23/402 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L E+V V + E V PFYLYS + R+ +A + L + +A+KA +N
Sbjct: 8 DGVLGAEEVPVPAIAEAV-GTPFYLYSTATLERHFKALDDSFADLAHLTCFAVKACSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL +LG GA +VSG EL AL AG DP K +++G GK ++ A + G+ + N++S
Sbjct: 67 ILRLFARLGGGADIVSGGELYRALAAGIDPGKIVYSGVGKTRAEIRQAIEAGILMFNLES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + + R+NPDVDPQ H Y++TG +KFGI + AV
Sbjct: 127 EQELEVVAQCATELQTTARISFRVNPDVDPQTHAYISTGLAKNKFGIPIAEAP----AVY 182
Query: 251 AHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
EL ++VG CH+GS +TKV F D + ++ ++ A G V YL+IGGGLGI
Sbjct: 183 RRARELAGVEIVGVSCHIGSQLTKVSPFVDTIDKLKKFLARLAADGIAVKYLDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT------ 361
Y P+P VR+ + + LI+EPGR ++ N +V V K+
Sbjct: 243 KYNQEEP--PEPAAYGAAVRQALGELDCTLILEPGRVIVGNAGIMVTRVLYTKSGPKSSP 300
Query: 362 ----NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
NG K FIV+D M +L RPSLYDAY I V D DVVGP+CE+ DFL
Sbjct: 301 ENSHNGQKKFIVVDAGMNDLFRPSLYDAYHAI--VPVVQGDGATQTADVVGPICETGDFL 358
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+++E+P G L V AGAY +MAS YN + R E V
Sbjct: 359 ARDQEVPAARPGELLAVKSAGAYGFTMASNYNSRPRVAEVLV 400
>gi|296109111|ref|YP_003616060.1| diaminopimelate decarboxylase [methanocaldococcus infernus ME]
gi|295433925|gb|ADG13096.1| diaminopimelate decarboxylase [Methanocaldococcus infernus ME]
Length = 431
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 151/385 (39%), Positives = 222/385 (57%), Gaps = 19/385 (4%)
Query: 84 DVMETVEK--RPFYLYSKPQI----TRNVEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
DV+E E+ P Y+ S+ QI R VEA+K+ E G I+ YA KAN+N I +
Sbjct: 19 DVIELAERFGTPLYIMSEEQIKINFNRYVEAFKRYEEETGKEFILAYAYKANSNLAITKL 78
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDL 194
L KLG GA +VSG EL +A + K +FNGN K+ E++++ + + NVDS +L
Sbjct: 79 LAKLGSGADVVSGGELYIAKLSQVPSEKIVFNGNCKIREEIIMGIESEIRAFNVDSISEL 138
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN 254
I ++ GK+ NV RINPDVDP+ HP ++TG K +KFG+ + +D N
Sbjct: 139 IMINEIAKELGKEANVAFRINPDVDPKTHPKISTGLKKNKFGLDTKTALKAIDMALKMEN 198
Query: 255 ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314
+ VG HCH+GS +T V F +A M+ +I K++ + EV LN+GGGLGI Y H
Sbjct: 199 -INFVGLHCHIGSQLTDVSPFVEATKKMMEFILKLKEKNIEVRDLNLGGGLGIPY-HKDK 256
Query: 315 VLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+P ++ +++ E +L NLIIEPGRS++A LV V +K +++
Sbjct: 257 EIPTVKDYANSIIETILKFKDKVEMPNLIIEPGRSIVATAGYLVGKVWHIKETEVTKWVM 316
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
ID M +L+RP++YDAY H+E A E K V G +CES+D G++RE+ + G
Sbjct: 317 IDAGMNDLMRPAMYDAYHHME---NAKVKGEKEKVSVAGGLCESSDVFGRDREIDKVEVG 373
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRP 454
+V+ DAGAY +SM++ YN + RP
Sbjct: 374 DYIVIFDAGAYGISMSNNYNSRGRP 398
>gi|262172884|ref|ZP_06040562.1| diaminopimelate decarboxylase [Vibrio mimicus MB-451]
gi|449145778|ref|ZP_21776577.1| diaminopimelate decarboxylase [Vibrio mimicus CAIM 602]
gi|261893960|gb|EEY39946.1| diaminopimelate decarboxylase [Vibrio mimicus MB-451]
gi|449078563|gb|EMB49498.1| diaminopimelate decarboxylase [Vibrio mimicus CAIM 602]
Length = 417
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQDDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESERELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPH-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q +++ P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQ--DIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSSGAYGFTMSSNYNSRPRVAEVMV 391
>gi|88797197|ref|ZP_01112787.1| LysA [Reinekea blandensis MED297]
gi|88780066|gb|EAR11251.1| LysA [Reinekea sp. MED297]
Length = 416
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 222/392 (56%), Gaps = 14/392 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V V+ + T P Y+YS+ I +AY+Q L +I YA+KAN+N +L
Sbjct: 11 LFAEQVSVEQLANTY-GTPLYIYSRQAIEHQFDAYQQGLGDHPGLICYAVKANSNLGVLS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L K G G +VS EL L AG P K +F+G K ++ A + G+ NV+S+ +
Sbjct: 70 LLAKRGAGFDIVSIGELERVLAAGGAPEKIVFSGVAKKASEMRRALEVGIHCFNVESQAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + G + + LR+NPDVD + HPY++TG K +KFG+ + + F
Sbjct: 130 LERLNSVAGDMGIQAPISLRVNPDVDAKTHPYISTGLKQNKFGVDHRLARAFYQ----RA 185
Query: 254 NEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
NEL +++G CH+GS + + F DA ++ +D+++ G ++++++GGG+G+ Y
Sbjct: 186 NELQHIRVIGMDCHIGSQLLEAKPFEDAVDRLLTLLDELKQDGIALEHIDMGGGIGVKYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P RN I + + RNL LI+EPGRS++AN LV V +K NG +F ++
Sbjct: 246 DQD-IEPDVRNYIRKLVGHLKDRNLALILEPGRSIVANAGILVTEVEYLKDNGEHHFGIV 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDRG 429
D M +LIRP+LY A+ I V+ D + +D+VGP+CE+ DFLGK R+L TP G
Sbjct: 305 DAGMNDLIRPALYQAWMDIVPVNRNA-DGHSASWDIVGPICETGDFLGKARDLSLTP--G 361
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY MAS YN + RP E V+
Sbjct: 362 DLLAVKSAGAYSFVMASNYNTRERPAEVLVQG 393
>gi|422631386|ref|ZP_16696573.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. pisi str.
1704B]
gi|330941151|gb|EGH44030.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 415
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN LK++G CH+GS +T ++ F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LKVIGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|402820740|ref|ZP_10870304.1| hypothetical protein IMCC14465_15380 [alpha proteobacterium
IMCC14465]
gi|402510386|gb|EJW20651.1| hypothetical protein IMCC14465_15380 [alpha proteobacterium
IMCC14465]
Length = 422
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 217/396 (54%), Gaps = 6/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+++ D L+ E++ V + + + PFY YS +T++ K A + I Y++
Sbjct: 2 HHFNRRED-RLFAENIDVTALADRI-GTPFYCYSTATLTQHYMRLKDAFAQNDVTICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ L LG GA +VS ELR AL AG K +F+G GK ++ A Q +
Sbjct: 60 KANSNLGVIATLANLGSGADVVSEGELRRALLAGIPAEKIVFSGVGKTEAEMAFALQSNI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GK + LR+NPD+D H ++TG +KFGI ++ +
Sbjct: 120 AQFNVESRAELEQLSDVAVKEGKTARISLRVNPDIDAGTHEKISTGKAENKFGIAWDEAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L+++G H+GS IT++ FR+A V + ++K+ G + L++GG
Sbjct: 180 ASYAKAATLPG-LEIIGIDIHIGSQITELTPFRNAFVKVAGLLEKLTDAGHNITTLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y A P P + + + E+ + + +EPGR + N LV V K
Sbjct: 239 GLGIPYAPDDAHPPSPEDYANLIGEIFGNSGCRIFLEPGRLIAGNAGILVTSVIRTKKGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNFI++D +M EL+RP+LY AY I+ V D ++ +DVVGPVCE+ DFLG ER L
Sbjct: 299 AKNFIIVDAAMTELMRPTLYGAYHDIQPVITNANDEDV--WDVVGPVCETGDFLGSERHL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P P +G L V GAY ++ S+YN ++ PE V
Sbjct: 357 PEPQQGDLLAVFTCGAYGATLGSSYNTRLSAPEVLV 392
>gi|374623695|ref|ZP_09696199.1| diaminopimelate decarboxylase [Ectothiorhodospira sp. PHS-1]
gi|373942800|gb|EHQ53345.1| diaminopimelate decarboxylase [Ectothiorhodospira sp. PHS-1]
Length = 415
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/393 (37%), Positives = 229/393 (58%), Gaps = 16/393 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ ED+ ++++ + P Y+YS+ + R+ A+ +AL ++ YA+KAN++
Sbjct: 8 DGVLHAEDLSLEELAQR-HGTPLYVYSRATLERHWHAFDRALGDHPHLVCYAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL +RAG DP K +F+G GK +++ A + G+ NV+S
Sbjct: 67 VLNLLARLGSGFDIVSVGELERVVRAGGDPGKVVFSGVGKRTDEMRRALELGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G V LR+NPDVD Q HPY++TG K +KFG+
Sbjct: 127 AAELERLNAEAGALGVTAPVSLRVNPDVDAQTHPYISTGLKENKFGVDVADALDLYRRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P+ L ++G CH+GS +T+++ F DA +++ + +G + +L++GGGLGI Y
Sbjct: 187 ALPH-LNIIGIDCHIGSQLTRLEPFVDALHRVLHLARTLEDEGIRLHHLDLGGGLGIRYR 245
Query: 311 HTGAVLPK--PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
LP+ R +++ +RE + +++EPGR++ N L+ V +K KNF
Sbjct: 246 DEHPPLPEAYARAMLEVLRET----HYEILVEPGRAIAGNAGVLLTRVEYLKPTRHKNFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +LIRPSLY+A+ +++V P+ E +DVVGPVCE+ DFLGKER L D
Sbjct: 302 IVDAAMNDLIRPSLYNAW--MDIVPVRPRGGEGIPYDVVGPVCETGDFLGKERTL---DL 356
Query: 429 GAG--LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
AG L V AGAY +M+S YN + RP E V
Sbjct: 357 AAGDLLAVRSAGAYGFTMSSNYNTRPRPAEVMV 389
>gi|265993744|ref|ZP_06106301.1| diaminopimelate decarboxylase [Brucella melitensis bv. 3 str.
Ether]
gi|262764725|gb|EEZ10646.1| diaminopimelate decarboxylase [Brucella melitensis bv. 3 str.
Ether]
Length = 421
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 217/389 (55%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL A + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAASIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|146343265|ref|YP_001208313.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 278]
gi|146196071|emb|CAL80098.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 278]
Length = 446
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 225/428 (52%), Gaps = 13/428 (3%)
Query: 53 PAKSQTHTAPVEHCFSKKA----------DGFLYCEDVRVQDVMETVEKRPFYLYSKPQI 102
PA S+ A + H + + DG L+ E V + ++ V PFY YS +
Sbjct: 4 PAISRQFAATITHSQAARGHEPMNHFDYRDGVLHAEAVNLAELASRV-GTPFYCYSTATL 62
Query: 103 TRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPT 162
R+ + A G + +I YA+KAN+N +L L KLG GA +VSG EL+ AL AG
Sbjct: 63 ERHYRVFADAFAGQDVLICYAMKANSNQSVLRTLAKLGAGADVVSGGELKRALAAGIPSR 122
Query: 163 KCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQ 221
K +F+G GK +L A + +N++SE +L+ + + G + +R+NPDVD
Sbjct: 123 KIVFSGVGKTEAELRAALAADIHCLNIESEPELDLLARLAVETGHTARISIRVNPDVDAG 182
Query: 222 VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVL 281
H ++TG +KFGI + + A A +K+ G H+GS IT + A +
Sbjct: 183 THAKISTGKSENKFGIPLDHARRVY-ARAAKMKGIKVTGVDVHIGSQITDLGPMETAFRI 241
Query: 282 MVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEP 341
+ ++ +RA G ++ +++ GGGLGI Y+ AV P+P V+ + + L+ EP
Sbjct: 242 LTEFVQTLRADGHDISHVDFGGGLGIPYHMDRAVPPEPAAYAAMVKRVSHNLGCTLMFEP 301
Query: 342 GRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEI 401
GR ++ N L+ V VK KNF++ID +M +LIRP+LY+A+ I V AP DA
Sbjct: 302 GRMIVGNAGILLAKVIYVKHGEAKNFVIIDAAMNDLIRPTLYEAHHDILPVKQAPPDAPA 361
Query: 402 SKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
DVVGPVCES D+L +R LP P G L + AGAY A TYN + PE V+
Sbjct: 362 FVADVVGPVCESGDYLALDRALPEPAPGDLLAIMTAGAYGAVQACTYNTRALVPEVLVKG 421
Query: 462 LISIIILP 469
+ +I P
Sbjct: 422 DQAAVIRP 429
>gi|84393560|ref|ZP_00992314.1| diaminopimelate decarboxylase [Vibrio splendidus 12B01]
gi|84375839|gb|EAP92732.1| diaminopimelate decarboxylase [Vibrio splendidus 12B01]
Length = 417
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 226/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYQEDGQLWAEDVALSQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L ++G G +VSG EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARMGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
K N L + G CH+GS +T ++ F DA ++ ID++RA + +L++GGGL
Sbjct: 183 YAFAKTLDN-LSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRANDINIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLDNHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I VS P+ E +D+VGP+CE+ DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVS--PRQGEAVTYDLVGPICETGDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSAGAYGFAMSSNYNTRSRAAEVMV 391
>gi|431805065|ref|YP_007231968.1| diaminopimelate decarboxylase [Pseudomonas putida HB3267]
gi|430795830|gb|AGA76025.1| diaminopimelate decarboxylase [Pseudomonas putida HB3267]
Length = 415
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVGLSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEEP--PLVADYIKAIRERVGDRDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVQSAGAYGFVMSSNYNTRGRCAEILV 389
>gi|417950409|ref|ZP_12593531.1| diaminopimelate decarboxylase [Vibrio splendidus ATCC 33789]
gi|342806532|gb|EGU41752.1| diaminopimelate decarboxylase [Vibrio splendidus ATCC 33789]
Length = 417
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 225/395 (56%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYQEDGQLWAEDVALSQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVVAAGGDPAKVVFSGVGKTAAEMKRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID++RA G + +L++GGGL
Sbjct: 183 YAFAQTLEN-LSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGINIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLDNHSDLELIFEPGRAIAANAGVLLTKVEFLKPTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGP+CE+ DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVNPRQGEAVTYDLVGPICETGDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSAGAYGFVMSSNYNTRSRAAEVMV 391
>gi|422666163|ref|ZP_16726033.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440723090|ref|ZP_20903457.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP34876]
gi|440728445|ref|ZP_20908661.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP34881]
gi|440745481|ref|ZP_20924773.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP39023]
gi|443640906|ref|ZP_21124756.1| Diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B64]
gi|330976601|gb|EGH76645.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|440360170|gb|ELP97454.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP34876]
gi|440361938|gb|ELP99154.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP34881]
gi|440372485|gb|ELQ09286.1| diaminopimelate decarboxylase [Pseudomonas syringae BRIP39023]
gi|443280923|gb|ELS39928.1| Diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B64]
Length = 415
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|402772872|ref|YP_006592409.1| diaminopimelate decarboxylase [Methylocystis sp. SC2]
gi|401774892|emb|CCJ07758.1| Diaminopimelate decarboxylase [Methylocystis sp. SC2]
Length = 421
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 223/404 (55%), Gaps = 20/404 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ E++ V + + V PFY YS I R+ + QA GL++++ YA+
Sbjct: 2 HLFDYR-NGALHAEEIAVATLADEVGT-PFYCYSAATIRRHYRVFSQAFAGLDALVCYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L + G G +VSG EL AL AG P K F+G GK E++ A G+
Sbjct: 60 KANSNQAVLRLLAREGAGMDVVSGGELARALAAGVAPEKITFSGVGKTREEIAAALDAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI---RNE 240
F NV+SE +LE + A+ G+ V LR+NPDVD + H ++TG +KFG+ R
Sbjct: 120 FCFNVESEPELEALSQAAVALGRAARVSLRVNPDVDARTHKKISTGLAENKFGVPLSRAR 179
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
++ F +K ++L GA H+GS +T + F +A L+ + ++RA G ++ +++
Sbjct: 180 EVYAFAAKLKG----IELAGADMHIGSQLTDLAPFDEAFSLLAELVRELRADGHDISHVD 235
Query: 301 IGGGLGIDYYHTGAVLPK---PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVT 357
+GGGLGI YH G P+ P + VR L++EPGR ++ N LV VT
Sbjct: 236 LGGGLGIP-YHDGDD-PQSYHPEKYAEIVRRRFGGLGCRLVLEPGRLIVGNAGMLVTRVT 293
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKF--DVVGPVCESAD 415
VK K F+++D M +LIRP+LYDA+ I P Q A+ + DVVGPVCE+ D
Sbjct: 294 YVKHGDAKTFVIVDAGMNDLIRPTLYDAWHDI---IPVRQSADRQRIVADVVGPVCETGD 350
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+L RE+ P G L V AGAY + TYN + PE V
Sbjct: 351 YLAHGREMVEPRAGELLAVLTAGAYGAVQSGTYNTRPLVPEVLV 394
>gi|421895860|ref|ZP_16326259.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
MolK2]
gi|206587025|emb|CAQ17609.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
MolK2]
Length = 407
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 8/370 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ +T N AY A EG N+ + YA+KAN+N +L+ +LG G +VSG ELR
Sbjct: 17 PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSNLAVLQIFAQLGAGFDIVSGGELR 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG +F+G GK +++ LA + GV NV+S +L + + GK V
Sbjct: 77 RVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNVESIPELHRLNEVAGSLGKTAPVS 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K +KFG+ E++ A A PN L++VG CH+GS IT+
Sbjct: 137 LRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRAAAAMPN-LRVVGIDCHIGSQITE 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA--VLPKPRNLIDTVREL 329
V + DA +++ + ++ A+G + ++++GGGLGI Y + R L+D + +
Sbjct: 196 VSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGLGITYTDETPPDITAFARTLLDRIEQR 255
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
+ ++ EPGRSL+ N L+ V +K KNF ++D +M +L RP++Y+AY HI
Sbjct: 256 GFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKNFCIVDAAMNDLARPAMYEAYHHI 314
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
V A + +DVVGPVCES D+LG++R L G L + AGAY +M+S YN
Sbjct: 315 VPVRERSGAATV--YDVVGPVCESGDWLGRDRALDVQP-GDLLAILSAGAYGFTMSSNYN 371
Query: 450 LKMRPPEYWV 459
+ R E V
Sbjct: 372 TRNRAAEVIV 381
>gi|451813278|ref|YP_007449731.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|451779247|gb|AGF50127.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 420
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 235/397 (59%), Gaps = 13/397 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + L+ E++ V ++E +E P Y+YSK IT ++Y QA++ N ++ Y +
Sbjct: 4 HNFKFK-NNILFVENISVSSIVEKLE-TPLYIYSKRAITEAWDSYYQAIKNRNCLVCYGM 61
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ +LG G +VSG EL L DP K +F+G GK ++ A + G+
Sbjct: 62 KANSNLAVLKEFSRLGSGFDIVSGGELERVLAIKADPKKVVFSGVGKQSWEIEKAIKSGI 121
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
NV+SE +L NI ++ G + LR+NPDVD HPY++TG K +KFGI N
Sbjct: 122 KCFNVESESELYNISKIAKNIGVIAPISLRVNPDVDANTHPYISTGLKENKFGISINTAY 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ AV PN L++VG CH+GS +T++ F D+ ++ I+K++A G ++ +++IG
Sbjct: 182 DCYKIAV-GLPN-LEIVGIDCHIGSQLTEIKPFIDSIEKIILLINKLKASGIQIKHIDIG 239
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGV 359
GG+GI Y + PK L+D V + +L +I+EPGRSLI N LV V +
Sbjct: 240 GGIGIQYKEESCISPKE--LVDKVFAKLEDNDLGDLQVILEPGRSLIGNAGILVTKVQYL 297
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K + +NF+++D +M +LIRP+LY +Y E+V +D ++DVVGPVCES+D+ K
Sbjct: 298 KKSEDRNFVIVDAAMNDLIRPALYQSYH--EIVPVIKRDGAKKEYDVVGPVCESSDWFAK 355
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+R L G L + AGAYCM+MAS YN + R E
Sbjct: 356 DRLLNELYEGELLAIESAGAYCMTMASNYNTRGRAAE 392
>gi|330827982|ref|YP_004390934.1| diaminopimelate decarboxylase [Aeromonas veronii B565]
gi|423211329|ref|ZP_17197882.1| diaminopimelate decarboxylase [Aeromonas veronii AER397]
gi|328803118|gb|AEB48317.1| Diaminopimelate decarboxylase [Aeromonas veronii B565]
gi|404613924|gb|EKB10937.1| diaminopimelate decarboxylase [Aeromonas veronii AER397]
Length = 416
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 232/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA ++ +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALEKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGNMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G++Y P P + +++ + R+L L+ EPGR+++AN L+ V +K T+
Sbjct: 242 GVNY--GSEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGETR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF +ID M +++RPSLY A+ + IE+ S A I +DVVGPVCE+ DFLGKER L
Sbjct: 300 NFALIDAGMNDMLRPSLYGAWMNIIEVDSRAGHAPAI--YDVVGPVCETGDFLGKERTLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G+ L V AGAY +M+S YN + R E V
Sbjct: 358 IAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|302189433|ref|ZP_07266106.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
642]
Length = 415
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGTLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ +E+ + P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAW--MEVTAVRPRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|167036274|ref|YP_001671505.1| diaminopimelate decarboxylase [Pseudomonas putida GB-1]
gi|166862762|gb|ABZ01170.1| diaminopimelate decarboxylase [Pseudomonas putida GB-1]
Length = 415
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PLVADYIKAIRERVGERDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVASAGAYGFVMSSNYNTRGRCAEILV 389
>gi|261217809|ref|ZP_05932090.1| diaminopimelate decarboxylase [Brucella ceti M13/05/1]
gi|261321343|ref|ZP_05960540.1| diaminopimelate decarboxylase [Brucella ceti M644/93/1]
gi|260922898|gb|EEX89466.1| diaminopimelate decarboxylase [Brucella ceti M13/05/1]
gi|261294033|gb|EEX97529.1| diaminopimelate decarboxylase [Brucella ceti M644/93/1]
Length = 420
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 4/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELKILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 245 RTDNTPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 305 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 365 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 393
>gi|300690200|ref|YP_003751195.1| diaminopimelate decarboxylase [Ralstonia solanacearum PSI07]
gi|299077260|emb|CBJ49886.1| Diaminopimelate decarboxylase [Ralstonia solanacearum PSI07]
gi|344169006|emb|CCA81327.1| diaminopimelate decarboxylase [blood disease bacterium R229]
Length = 419
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/393 (37%), Positives = 223/393 (56%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L E V ++ + P Y+YS+ +T N AY A E N+ + YA+KAN+N
Sbjct: 7 RQDGALMVEGVALEAIAAQFGT-PTYVYSRAALTANYRAYAAACESRNARVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VSG ELR L AG +F+G GK +++ LA + GV NV
Sbjct: 66 LAVLQIFAQLGAGFDIVSGGELRRVLAAGGKAANVVFSGVGKTADEMRLALEAGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ E++ A
Sbjct: 126 ESIPELHRLNEVAGSLGKTAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRMVGIDCHIGSQITEVSPYLDAIDKVLDVVARLDAEGIRLSHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D + + + ++ EPGRSL+ N L+ V +K KN
Sbjct: 245 YTDETPPDITAFARTLLDRIEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V + + +D+VGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHI--VPVRERGGAPTVYDIVGPVCESGDWLGRDRALDVQ 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 362 P-GDLLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|422594505|ref|ZP_16668796.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|330984813|gb|EGH82916.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 415
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|365878803|ref|ZP_09418259.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 375]
gi|365293318|emb|CCD90790.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 375]
Length = 421
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 218/400 (54%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ TV PFY YS + R+ + A G + +I YA+KAN+N
Sbjct: 8 DGVLHAEDVNLAELAATV-GTPFYCYSTATLERHYRVFADAFAGQDVLICYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG K +F+G GK +L A + +N++S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPSRKIVFSGVGKTEAELRAALAADIHCLNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G + +R+NPDVD H ++TG +KFGI + +
Sbjct: 127 EPELDLLARLAVETGHTARISVRVNPDVDAGTHAKISTGKSENKFGIPLDHARRVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT + A ++ ++ +RA G ++ +++ GGGLGI Y+
Sbjct: 187 KMPG-IKVTGVDVHIGSQITDLGPMETAFRILTEFVQTLRADGHDISHVDFGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
AV P+P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDRAVPPEPAAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGEAKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+A+ I V PAP +A DVVGPVCES D+L +R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVKQPAP-NAPAFTADVVGPVCESGDYLALDRALPEPAPG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY A TYN + PE V+ S +I P
Sbjct: 365 DLLAIMTAGAYGAVQACTYNTRALVPEVLVKGDQSAVIRP 404
>gi|392422809|ref|YP_006459413.1| diaminopimelate decarboxylase [Pseudomonas stutzeri CCUG 29243]
gi|390984997|gb|AFM34990.1| diaminopimelate decarboxylase [Pseudomonas stutzeri CCUG 29243]
Length = 415
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 225/396 (56%), Gaps = 9/396 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + DG L+ E V + + + P Y+YS+ I AY AL+G+ ++ +A+
Sbjct: 2 EAFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALDGMPHLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A + GV
Sbjct: 60 KANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGQPDRIVFSGVGKTRDDMRRALEVGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +LE + + GKK V LR+NPDVD HPY++TG K +KFGI + +
Sbjct: 120 HCFNVESTDELERLQQVAAELGKKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAE 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
PN L++VG CH+GS +T + F DA ++ +++ +G ++ +L++GG
Sbjct: 180 AVYARAAELPN-LEVVGVDCHIGSQLTSLPPFLDALDRLLALTERLATRGIQIRHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P + I VR+ + R L L+ EPGRS+ AN L+ V +K
Sbjct: 239 GLGVRYRDEQP--PLAGDYIQAVRQRIEGRGLALVFEPGRSIAANAGVLLTRVEYLKHTA 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+ ++ ++ P + + ++D+VGP+CE+ DFL K+REL
Sbjct: 297 HKDFAIVDAAMNDLIRPALYQAWMNV--IAVQPHEGDTRRYDIVGPICETGDFLAKDREL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 355 ALVE-GDLLAVCSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|333898586|ref|YP_004472459.1| diaminopimelate decarboxylase [Pseudomonas fulva 12-X]
gi|333113851|gb|AEF20365.1| diaminopimelate decarboxylase [Pseudomonas fulva 12-X]
Length = 415
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ YA+KAN+N
Sbjct: 8 DGSLFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRAYADALAGMPHLVCYAVKANSNIG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG +P++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + K V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 127 SVELERLQKVAAEMDVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN ++++G CH+GS +T ++ F DA ++ +DK+ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-IEVIGVDCHIGSQLTTLEPFLDALDRLLLLVDKLAARGIVIKHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I VR+ + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEQP--PQVGDYIAAVRQRLAGRDLALVFEPGRFIVANGGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMEVSAVQ--PRDGEARHYDLVGPICETGDFLAKDRQL-VLEEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|260220221|emb|CBA27542.1| Diaminopimelate decarboxylase [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 464
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 217/389 (55%), Gaps = 9/389 (2%)
Query: 84 DVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGA 143
D + + P ++YSK + + AY++ G N+ I YA+KAN++ IL+ K GCG
Sbjct: 64 DALASTHGTPLFVYSKASMLDALAAYQRGFAGRNARICYAMKANSSLAILQLFAKAGCGF 123
Query: 144 VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASR 202
+VS EL L AG D K IF+G GK ++ A + G+ NV+SE +++ + +
Sbjct: 124 DIVSEGELARVLAAGADAGKVIFSGVGKTRAEMARALEVGIGCFNVESEAEIDVLNEVAL 183
Query: 203 IAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAH 262
GK+ + +R+NP+VDP+ HPY++TG K +KFGI +E+ A P LK+VG
Sbjct: 184 GMGKQAPISIRVNPNVDPKTHPYISTGLKGNKFGIAHERTLLTYQRAAALPG-LKVVGID 242
Query: 263 CHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNL 322
CH+GS IT+ + DA M++ ++ I A G + +++ GGGLGI+Y G P L
Sbjct: 243 CHIGSQITEETPYLDAMDRMLDLVESIEAAGIGIHHIDFGGGLGINY--NGDTPPAADAL 300
Query: 323 IDTVRELVLSRNL---NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIR 379
+ + +R L+IEPGRSL+ N V V +K KNF ++D +M +L R
Sbjct: 301 WHKLLAKLDARGFGQRQLMIEPGRSLVGNAGVCVTEVLYMKPGEQKNFCIVDAAMNDLPR 360
Query: 380 PSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAG 438
P++Y A+ I V A Q + FDVVGPVCES D++G +R L G L V AG
Sbjct: 361 PAMYQAFHTIVPVKQAASQSSGAEVFDVVGPVCESGDWIGHDRTLQV-QSGDKLAVLSAG 419
Query: 439 AYCMSMASTYNLKMRPPEYWVRSLISIII 467
AYCMSM+S YN + + E V S +I
Sbjct: 420 AYCMSMSSNYNSRPKAAEVLVDGAHSHLI 448
>gi|87121333|ref|ZP_01077223.1| diaminopimelate decarboxylase [Marinomonas sp. MED121]
gi|86163490|gb|EAQ64765.1| diaminopimelate decarboxylase [Marinomonas sp. MED121]
Length = 418
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 155/396 (39%), Positives = 224/396 (56%), Gaps = 9/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L E V + + + P Y+YS+ + R+ +AY A S+I YA+KA
Sbjct: 3 FFNYKDQALMAEGVSIASIAQQ-HGTPCYVYSRETLERHYKAYADAFASHPSLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
+N IL L K+G G +VS EL LRAG D +K +F+G GK ++ A + G+
Sbjct: 62 CSNIAILNVLAKMGAGFDIVSVGELERVLRAGGDASKVMFSGLGKQAHEMERALEVGIHC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244
N++SEF+L + + GKK V LR+NPDVD + HPY++TG K +KFGI N+ ++
Sbjct: 122 FNIESEFELYRLNEVAEKLGKKAPVSLRVNPDVDAKTHPYISTGLKENKFGIDINDAVRI 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ + L ++G CH+GS +T++ F DA ++ ID++ G E+ ++++GGG
Sbjct: 182 Y--TIAHELPYLDVMGVDCHIGSQLTELTPFIDAFDRLLKLIDELALVGIEIKHVDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y V P P + V V +R +L EPGRS+ AN LV V +K +
Sbjct: 240 LGVRY--RDEVPPVPADYAALVLPKVENRAFSLAFEPGRSIAANAGILVTQVEFLKCSEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKEREL 423
KNF +IDG+M +LIRPSLY A+ I V Q K +D+VGPVCE+ DFLGK+REL
Sbjct: 298 KNFAIIDGAMNDLIRPSLYSAWMDIVPVKLKSQATGNKKLYDLVGPVCETGDFLGKDREL 357
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 358 DL-EAGDLLAVRSAGAYGFTMSSNYNSRNRAAEVMV 392
>gi|421498414|ref|ZP_15945525.1| diaminopimelate decarboxylase [Aeromonas media WS]
gi|407182575|gb|EKE56521.1| diaminopimelate decarboxylase [Aeromonas media WS]
Length = 416
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 235/395 (59%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E + +Q + + P Y+YS+ + R+ A+ QA + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQLPLQQLADQY-GTPLYVYSRATLERHWHAFDQAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA ++ +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSESEMRLALEKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E+
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A + +++ G CH+GS +T+++ F +AA ++ ID++ A+G + +L++GGGL
Sbjct: 183 YRKAAAMAH-IEIKGVDCHIGSQLTELNPFMEAADKLLKLIDELAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVL-PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G++Y GA P P + +++ + R+L L+ EPGR+++AN L+ V +K T
Sbjct: 242 GVNY---GAEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEFLKPGET 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF +ID M +L+RPSLY A+ +I V + E + +DVVGPVCE+ DFLGKER L
Sbjct: 299 RNFALIDAGMNDLLRPSLYGAWMNIIEVD-SRTTHEKALYDVVGPVCETGDFLGKERTLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G+ L V AGAY +M+S YN + R E V
Sbjct: 358 IAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|399116166|emb|CCG18971.1| diaminopimelate decarboxylase [Taylorella asinigenitalis 14/45]
Length = 425
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 231/414 (55%), Gaps = 30/414 (7%)
Query: 61 APVEHCFSKKADGFLYCEDVRVQDVMETVEKR----PFYLYSKPQITRNVEAYKQALEGL 116
+P+ +GFLY E++ V ET+ K PF LYSK + AY +
Sbjct: 3 SPISFPHIHYKNGFLYVENLSVA---ETISKNYVQTPFVLYSKAALDEAWSAYGSIAKNY 59
Query: 117 -NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLED 175
N++I YA+KAN+N IL++ + G G +VSG EL L G DP K IF+G GK +
Sbjct: 60 PNTLICYAVKANSNLAILQYFARAGSGFDIVSGGELLRCLEIGADPKKIIFSGVGKQDWE 119
Query: 176 LVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
+ LA + G+ NV+SE +LE I R G K V +R+NPD+D + HPY++TG K +K
Sbjct: 120 IKLALESGIKCFNVESESELERIATLGREVGIKAKVSIRVNPDIDARTHPYISTGLKENK 179
Query: 235 FGIRNEKLQWFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
FGI + LD K A + L++VG CH+GS I + + + DA +++ I +
Sbjct: 180 FGIEFSRA---LDIFKRAATLDSLEIVGIDCHIGSQILETEPYLDAVDRVIDLIKALVQA 236
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI-------DTVRELVLSRNLNLIIEPGRSL 345
G E+ +++IGGG GI Y KP ++I +RE L ++ +I+EPGRSL
Sbjct: 237 GIELKHIDIGGGFGIRYLD-----EKPLDIIYLRQALDSKLREAELG-DMQVIMEPGRSL 290
Query: 346 IANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFD 405
+AN+ LV V +K KNF++++ M +LIRPSLY+A+ + + +D + +D
Sbjct: 291 VANSAILVASVIVIKKTEFKNFVILNAGMNDLIRPSLYEAFHGV--LPVIERDGDTDTYD 348
Query: 406 VVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+VGP+CE+ D+L K+R L + G + + GAY +MAS YN + EY V
Sbjct: 349 IVGPICETGDWLAKDRNLSIQE-GDLIAIESVGAYGTTMASNYNSRPFLAEYMV 401
>gi|152993635|ref|YP_001359356.1| diaminopimelate decarboxylase [Sulfurovum sp. NBC37-1]
gi|151425496|dbj|BAF72999.1| diaminopimelate decarboxylase [Sulfurovum sp. NBC37-1]
Length = 409
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 216/366 (59%), Gaps = 9/366 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + R K+A G S+I YA+KAN+N ++ HL KLG GA VS E+R
Sbjct: 15 PLYMYDFDYMERRYNDLKEAFAGKKSLINYAVKANSNLSVIAHLAKLGTGADCVSIGEVR 74
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVL 211
AL AG D K IF+G GK +++ A ++ + + N++SE +++ + + ++ GK+ +
Sbjct: 75 RALDAGVDRYKIIFSGVGKRDDEIREALEKDILMLNLESEAEMKRVEMVAKELGKEARIS 134
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE-LKLVGAHCHLGSTIT 270
+R+NP++DPQ HPY++TG +KFG+ + + + A+ +E L VG H H+GS +T
Sbjct: 135 IRVNPNIDPQTHPYISTGLHENKFGVEIDMAKRMY--IYANKSEYLNPVGIHFHIGSQLT 192
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
K+D +++AV++ + + ++ ++ + ++GGG+G+ Y +P R+ + + E
Sbjct: 193 KLDPIKESAVIVADLVRSLKVIKIDIKFFDVGGGIGV-VYSDETTIP-VRDYTEAIFEAT 250
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
++ L+ EPGR ++AN V K N K F+++DG M +LIRPSLY+AY I+
Sbjct: 251 KGLDVTLLCEPGRYMVANAGAFFTSVLYEKVNDGKRFVIVDGGMNDLIRPSLYNAYHKID 310
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
V + E + DVVGPVCES DF GK LP +VVH AGAY +MAS YN
Sbjct: 311 AVMV---EGERTFADVVGPVCESGDFFGKNVPLPPLKHNDLIVVHSAGAYGFTMASNYNT 367
Query: 451 KMRPPE 456
+ +P E
Sbjct: 368 RPKPAE 373
>gi|422608385|ref|ZP_16680368.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. mori str.
301020]
gi|330892010|gb|EGH24671.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. mori str.
301020]
Length = 415
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALARLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLFFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPCAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|304309745|ref|YP_003809343.1| diaminopimelate decarboxylase [gamma proteobacterium HdN1]
gi|301795478|emb|CBL43676.1| Diaminopimelate decarboxylase (DAP decarboxylase) [gamma
proteobacterium HdN1]
Length = 422
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 227/396 (57%), Gaps = 21/396 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + + E V P Y+YS+ I + A+ +A ++ +A+KAN+N +L
Sbjct: 12 LHAEQVNLTQLAEQV-GTPAYVYSRSAIEQQWLAFDRAFGAHPHLVCFAVKANSNIAVLN 70
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL LRAG DP K +F+G GK ++ A GV NV+SE +
Sbjct: 71 LLARLGAGFDIVSEGELERVLRAGGDPKKVVFSGVGKQPAEMARALTVGVRCFNVESESE 130
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L + + G K V LR+NPDVD Q HPY++TG K +KFGI + LQ + DA +
Sbjct: 131 LHTLNQVAATLGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIDIDRALQVYRDA--SE 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ +VG CH+GS +T++ F DA ++ +D ++A+G + +L++GGGLG+ Y +
Sbjct: 189 LPHINIVGVDCHIGSQLTQLAPFLDALDRVLVLVDALKAEGIALRHLDLGGGLGVCYRNE 248
Query: 313 GAVLPKPRNLIDTVRELVL---------SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
+P + D V+ L+ + + +I+EPGR+++AN L+ + G+K
Sbjct: 249 -----QPPSPSDYVQALLTRLGQHPEFGKQGIEIILEPGRAIVANAGVLLTRIMGLKETP 303
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+ F +IDG+M +LIRP+LY A+Q I V QD+ + +D+VGPVCE+ DFLGKER L
Sbjct: 304 ARKFAIIDGAMNDLIRPALYGAWQEIVAVKER-QDSPEATYDIVGPVCETGDFLGKERAL 362
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+G L V AGAY M+S YN + R E V
Sbjct: 363 RI-QQGDLLAVKSAGAYGFVMSSNYNTRNRAAEVIV 397
>gi|313202258|ref|YP_004040916.1| diaminopimelate decarboxylase [Methylovorus sp. MP688]
gi|312441574|gb|ADQ85680.1| diaminopimelate decarboxylase [Methylovorus sp. MP688]
Length = 415
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + + E P Y+YS+ + ++Q G++ ++ +A+KAN +
Sbjct: 8 NGQLHAEQVPLNQLAEEFST-PCYVYSRQALETAYRDFQQGFAGVDHLVCFAVKANPSLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L KLG G +VSG EL L AG D +K +F+G GK +++ A G+F NV+S
Sbjct: 67 VLSVFAKLGAGFDIVSGGELARVLAAGGDASKVVFSGVGKTADEMRAALTAGIFCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + GK V LR+NP+VD + HPY++TG KN+KFG+ E+
Sbjct: 127 AAELERLNEVAGSMGKIAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEQSLALYQQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN + + G CH+GS +T++ F DA ++ +D++ A G + +++ GGG+GI Y
Sbjct: 187 AMPN-IDVHGVDCHIGSQLTELSPFLDAFDRVLALVDQLEAAGIAIRHIDAGGGIGICYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + + R + L+ EPGR+L+ N L+ V +K KNF ++
Sbjct: 246 EE--TPPDFAAYAAAMLKKLGDRKVKLVFEPGRALVGNAGALLTRVEYLKHTEAKNFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LYDAY I VSP EI +++VGPVCES DFLG +REL +G
Sbjct: 304 DAAMNDLMRPALYDAYHQIAEVSPDATPKEI--YEIVGPVCESGDFLGHDRELGLK-QGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY MSM+S YN + R E V
Sbjct: 361 LLAILSAGAYGMSMSSNYNTRPRAAEVMV 389
>gi|53804982|ref|YP_113352.1| diaminopimelate decarboxylase [Methylococcus capsulatus str. Bath]
gi|53758743|gb|AAU93034.1| diaminopimelate decarboxylase [Methylococcus capsulatus str. Bath]
Length = 415
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 154/393 (39%), Positives = 221/393 (56%), Gaps = 15/393 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + + E P Y+YS+ + R+ A+ AL ++ YA+KAN+N
Sbjct: 8 DGILHVEDVPLSAIAEQ-HGTPCYVYSRATLERHWHAFDAALGDCPHLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF---VNV 188
IL L +LG G +VS EL L AG DP++ +F+G GK ++L A G+ V V
Sbjct: 67 ILNLLARLGSGFDIVSVGELERVLAAGGDPSRVVFSGVGKREDELARALDTGIRCFNVEV 126
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLD 247
E D + + R G K V LR+NPDVD HPY++TG +KFGI E L +
Sbjct: 127 AEELDRLDRLAGER--GVKAPVSLRVNPDVDAGTHPYISTGLSENKFGIEVEEALVQYRR 184
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A + PN L++VG CH+GS +T F DA ++ + ++R +G + +L++GGGLGI
Sbjct: 185 AARM-PN-LEVVGIDCHIGSQLTSSMPFIDALDRVLALVARLRGEGIAIRHLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P + + + + ++IEPGR++ N L+ + +K N TK+F
Sbjct: 243 RYRDEDP--PHPTEYAEQLFRRLGRHDFEILIEPGRAVAGNAGILLTRLEYLKANQTKHF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TP 426
++D +M +L+RP+LY A+Q I V+P D E +DVVGPVCE+ DFLGK REL P
Sbjct: 301 AIVDAAMNDLLRPALYGAWQEIVPVAPR-NDVESHSYDVVGPVCETGDFLGKSRELRLVP 359
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY SM+S YN + RP E V
Sbjct: 360 --GDLLAVRSAGAYGFSMSSNYNSRPRPAEILV 390
>gi|71738109|ref|YP_277093.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482608|ref|ZP_05636649.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|289624630|ref|ZP_06457584.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. NCPPB 3681]
gi|289651144|ref|ZP_06482487.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|416013735|ref|ZP_11561715.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. B076]
gi|416022552|ref|ZP_11567701.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422406163|ref|ZP_16483197.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|422585196|ref|ZP_16660284.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|422683417|ref|ZP_16741677.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
gi|71558662|gb|AAZ37873.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326562|gb|EFW82613.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331372|gb|EFW87313.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330870014|gb|EGH04723.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330881320|gb|EGH15469.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|331012751|gb|EGH92807.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci str.
ATCC 11528]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDGEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|298156139|gb|EFH97245.1| Diaminopimelate decarboxylase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIANAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDGEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|119503712|ref|ZP_01625794.1| putative diaminopimelate decarboxylase [marine gamma
proteobacterium HTCC2080]
gi|119460220|gb|EAW41313.1| putative diaminopimelate decarboxylase [marine gamma
proteobacterium HTCC2080]
Length = 418
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE+V + D M + P Y+YS+ I + AY+ AL + +I YA+KAN+N IL
Sbjct: 11 LFCEEVAL-DEMASKYGTPLYVYSRACIEQAYLAYQTALADHDHLICYAVKANSNLAILS 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L KLG G +VS EL + AG DPTK +F+G K + A + G+ NV+SE +
Sbjct: 70 VLAKLGAGFDIVSLGELERVIAAGGDPTKVVFSGVCKTHAAIKRALEVGIHCFNVESESE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
LE + ++ +G + LR+NPDVD Q HPY+ATG K++KFG+ + L+ + AV A
Sbjct: 130 LEALSEVAQASGMVAPISLRVNPDVDAQTHPYIATGLKDNKFGVELDSALRLYRKAV-AL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
P +K +G CH+GS I + F +A +++ ++ ++++G ++++++GGGLGI Y +
Sbjct: 189 PG-IKPIGIDCHIGSQILDIAPFSEAMDHLIDVLENLKSEGIMLEHIDLGGGLGIPYGNE 247
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
A PK + + + + + +L LI+EPGRS++A L+ V +K KNF ++D
Sbjct: 248 NA--PKIADYVAALTQGLSDHSLTLILEPGRSIVAEAGVLLTEVMYLKPTPHKNFALVDA 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LY A+Q I ++ DA+ +D+VGPVCE+ DFLGK+R L + G L
Sbjct: 306 AMNDLLRPALYGAWQDIVPLNNRNGDAKC--WDIVGPVCETGDFLGKDRNLSLTE-GDVL 362
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY MAS YN + R E V
Sbjct: 363 AVMTAGAYGFVMASNYNTRPRSAEVMV 389
>gi|254000301|ref|YP_003052364.1| diaminopimelate decarboxylase [Methylovorus glucosetrophus SIP3-4]
gi|253986980|gb|ACT51837.1| diaminopimelate decarboxylase [Methylovorus glucosetrophus SIP3-4]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + + E P Y+YS+ + ++Q G++ ++ +A+KAN +
Sbjct: 8 NGQLHAEQVPLNQLAEEFST-PCYVYSRQALETAYRDFQQGFAGVDHLVCFAVKANPSLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L KLG G +VSG EL L AG D +K +F+G GK +++ A G+F NV+S
Sbjct: 67 VLSVFAKLGAGFDIVSGGELARVLAAGGDASKVVFSGVGKTADEMRAALTAGIFCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + GK V LR+NP+VD + HPY++TG KN+KFG+ E+
Sbjct: 127 AAELERLNEVAGSMGKIAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEQSLALYQQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN + + G CH+GS +T++ F DA ++ +D++ A G + +++ GGG+GI Y
Sbjct: 187 AMPN-IDVHGVDCHIGSQLTELSPFLDAFDRVLALVDQLEAAGIAIRHIDAGGGIGICYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + + R + L+ EPGR+L+ N L+ V +K KNF ++
Sbjct: 246 EE--TPPDFAAYAAAMLKKLGDRKVKLVFEPGRALVGNAGALLTRVEYLKHTEAKNFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LYDAY I VSP EI +++VGPVCES DFLG +REL +G
Sbjct: 304 DAAMNDLMRPALYDAYHQIAEVSPDATPKEI--YEIVGPVCESGDFLGHDRELGLK-QGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY MSM+S YN + R E V
Sbjct: 361 LLAILSAGAYGMSMSSNYNTRPRAAEVMV 389
>gi|334131119|ref|ZP_08504885.1| Diaminopimelate decarboxylase [Methyloversatilis universalis FAM5]
gi|333443749|gb|EGK71710.1| Diaminopimelate decarboxylase [Methyloversatilis universalis FAM5]
Length = 413
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 227/390 (58%), Gaps = 11/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV ++ + P ++YS+ +T AY AL G ++++ YA+K+N+N
Sbjct: 8 DGALYAEDVALERIAAEYGT-PTFVYSRAALTEAHAAYADALAGRDAMLCYAVKSNSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
I+ +LG G +VSG EL + AG DP K +F+G GK +++ A G++ NV+S
Sbjct: 67 IMNVFARLGTGFDIVSGGELARVIAAGGDPAKVVFSGVGKTRDEMRAALTHGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
E +L + + GK+ + LR+NPDVDP+ HPY++TG K +KFG+ + + +L+A
Sbjct: 127 EAELHRLAEVAASLGKRAPIALRVNPDVDPKTHPYISTGLKCNKFGVPIADAHRIYLEAA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
K +L++ G CH+GS + +AA +V + + G E+ +L++GGGLGI Y
Sbjct: 187 KL--PQLEIRGIACHIGSQLLDPAPVAEAAGKVVALAEALNRDGIELRHLDLGGGLGIRY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+P R+ + + ++ R L++EPGRSL+ N L++ V +K +NF +
Sbjct: 245 --DDETVPATRDYLAPLLAVLAGRKERLLLEPGRSLVGNAGVLLSKVEYLKRGEERNFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
ID +M +L RP+LYDAY I V P + A+I +DVVGPVCES DFLG+ REL
Sbjct: 303 IDAAMNDLARPALYDAYHRIAEVRPRGK-ADI--YDVVGPVCESGDFLGRARELAVEQED 359
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY M+M+S YN + R E V
Sbjct: 360 L-VAIFSAGAYGMTMSSNYNTRARAAEVMV 388
>gi|357386004|ref|YP_004900728.1| diaminopimelate decarboxylase [Pelagibacterium halotolerans B2]
gi|351594641|gb|AEQ52978.1| diaminopimelate decarboxylase [Pelagibacterium halotolerans B2]
Length = 426
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 217/388 (55%), Gaps = 4/388 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + G+++ EDV + V E + PFY YS+ TR++E A G ++++ YA+
Sbjct: 3 HHFTYRG-GWMFAEDVDLTAVAEEI-GTPFYCYSQATFTRHIEVMMNAFSGTDTLVAYAM 60
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L + G GA +VS EL ALRAG K IF+G GK ++ A G+
Sbjct: 61 KANSNQAMLAIAAQKGIGADVVSLGELERALRAGIPAQKIIFSGVGKSRAEMRRALDVGI 120
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + + V +RINPDVD + H ++TG +KFGI + +
Sbjct: 121 LCFNVESEPELERLNAVAAEMDRIAPVSVRINPDVDAKTHAKISTGKSENKFGIPYARAE 180
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ A N LK VG H+GS IT+++ F +A L+ + ++RA G ++ ++++GG
Sbjct: 181 AVYGRIAACKN-LKAVGVDMHIGSQITELEPFDNAFKLLAELVGRLRAAGHDIGHVDVGG 239
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y + P P VR +I+EPGR + N +V V VK
Sbjct: 240 GLGIPYQQDNSPPPDPVEYAKLVRRHTDPLGCKVILEPGRLIAGNAGVMVTRVEYVKKTD 299
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F+++D +M +LIRP+LY+A+ I + A A + D+VGPVCE+ D+LG +RE+
Sbjct: 300 KKSFVIVDAAMNDLIRPTLYEAHHDILPMQEAGAGANTIRADIVGPVCETGDYLGLDREM 359
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLK 451
G LVV AGAY M+STYN +
Sbjct: 360 AEVAEGDLLVVMSAGAYGAVMSSTYNTR 387
>gi|325294479|ref|YP_004280993.1| diaminopimelate decarboxylase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064927|gb|ADY72934.1| diaminopimelate decarboxylase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 420
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 11/390 (2%)
Query: 74 FLYCEDVRVQ----DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN 127
F+Y E+ +++ V E K P Y+YS+ + + + A + I +A+K+N
Sbjct: 8 FIYYENGKLKIDGISVEELARKYGTPLYVYSQSALEHWFKEFDSAFSSIEHITCFAVKSN 67
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV- 186
+N +L+ L++LG GA VS E+ AL AG DP K +F G GK ++++ ++G+ +
Sbjct: 68 SNISVLKVLKELGAGADTVSMGEIFRALTAGIDPKKIVFAGVGKRIDEIEYGLEKGILMF 127
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NV+SE +L I + GK + R+NPDV+P+ HPY++TG K SKFGI E
Sbjct: 128 NVESESELYAINRVAEKLGKVAPIAFRVNPDVNPKTHPYISTGLKTSKFGIAYEGAIELY 187
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
K N + +G H H+GS IT V +F +AA + + ++ + G E++Y + GGGLG
Sbjct: 188 KKAKNLKN-INPIGIHFHIGSQITDVSVFGEAARKIKEIVKELYSVGIEIEYFDAGGGLG 246
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P R L D + ++ LI+EPGR L N L++ V K K
Sbjct: 247 ISYNPNEPPVP-ARALADEIIPIIKDLGCKLILEPGRRLAGNAGILLSQVIYKKERHEKL 305
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D M +L RPSLY AY HI V + ++ + K DVVGP+CE+ D L ++RELP
Sbjct: 306 FYIVDAGMNDLARPSLYKAYHHI--VPASKKEGNLKKADVVGPICETGDILAEDRELPPL 363
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+ G + V AGAY +MAS YN + RP E
Sbjct: 364 NEGDIIAVLSAGAYGFTMASNYNSRPRPAE 393
>gi|422620376|ref|ZP_16689056.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. japonica
str. M301072]
gi|330900736|gb|EGH32155.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. japonica
str. M301072]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAAEYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ +++ + P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAW--MDVTAGRPRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|422591143|ref|ZP_16665791.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878499|gb|EGH12648.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAFADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DE--VPPLAGDYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|114319371|ref|YP_741054.1| diaminopimelate decarboxylase [Alkalilimnicola ehrlichii MLHE-1]
gi|114225765|gb|ABI55564.1| diaminopimelate decarboxylase [Alkalilimnicola ehrlichii MLHE-1]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 225/396 (56%), Gaps = 21/396 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L E V ++D+ E V P Y+YSK I + QAL + YA+KAN+N
Sbjct: 8 DGRLCAEAVPLEDIAEQVGT-PTYVYSKAAIESAWRGFDQALGDHPHQVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VSG EL L AG DP + +F+G GK +++ A + G+ NV+S
Sbjct: 67 VLQLLARLGSGFDIVSGGELERVLAAGGDPRRVVFSGVGKTADEMRRALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWF 245
+L + +R+AG+ V LR+NPDVD + HPY++TG + +KFG IR + +
Sbjct: 127 TAELSRL---NRVAGELRLTAPVSLRVNPDVDARTHPYISTGLRENKFGIDIREAEAIYR 183
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A AH L + G H+GS +T + DA ++ +D++ A+G + +L++GGGL
Sbjct: 184 QAANAAH---LSVEGVDFHIGSQLTDLSPIADALERVLALVDRLAAEGITIRHLDVGGGL 240
Query: 306 GIDYYHTG--AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GI Y A R L+D ++ R+L L++EPGR+++ N L+ V +K
Sbjct: 241 GIRYRDETPPAAEDYARVLLDGLQ----GRDLELLMEPGRAVVGNAGVLITRVQYLKDGS 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+ F V+D +M +L+RPSLYD + I V P D + +D+VGPVCE+ DFLGK+REL
Sbjct: 297 EQRFAVVDAAMNDLLRPSLYDGWHAITPVRPR-ADTDTLPWDIVGPVCETGDFLGKQREL 355
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L VH AGAY MAS YN + RP E V
Sbjct: 356 ALAE-GDLLAVHSAGAYGFVMASNYNTRPRPAEVLV 390
>gi|146305308|ref|YP_001185773.1| diaminopimelate decarboxylase [Pseudomonas mendocina ymp]
gi|145573509|gb|ABP83041.1| diaminopimelate decarboxylase [Pseudomonas mendocina ymp]
Length = 415
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSALAQRF-GTPTYVYSRAHIEAQYRAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG +P++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G K V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 127 SVELERLQKVAAELGLKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T ++ F DA ++ +D++ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LEVVGVDCHIGSQLTTLEPFLDALDRLLLLVDRLAARGIHIKHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VR+ + R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PLAGDYIAAVRKRLAGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSPVQ--PRDGEARHYDLVGPICETGDFLAKDRQL-VLEEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|90581046|ref|ZP_01236846.1| putative diaminopimelate decarboxylase [Photobacterium angustum
S14]
gi|90437742|gb|EAS62933.1| putative diaminopimelate decarboxylase [Vibrio angustum S14]
Length = 416
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 231/399 (57%), Gaps = 17/399 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + + L+ E+V + + E P Y+YS+ + R+ +A+ +A+ +I YA+KA
Sbjct: 4 FNYQQNNQLWAENVPLAQLAEQY-GTPLYVYSRATLERHWKAFDEAVATHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNVLARLGSGFDIVSQGELERVIAAGGDPAKVVFSGVGKTATEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNAVAEELGVTAPISLRINPDVDAKTHPYISTGLRDNKFGIVFDRAVEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L++VG CH+GS +T + F DA ++ +D+++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPH-LQVVGMDCHIGSQLTDISPFIDATDRLLALVDELKAEGIHIQHLDLGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVK 360
G+ Y P+P + +L+R +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVTYNDEQP--PQPADYASA----LLARLENYPDLELIFEPGRAIAANAGVLLTKVEFLK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +LIRP+LY A+Q I VSP +A + +D+VGP+CE+ DF+GK+
Sbjct: 296 HTEHKNFAIVDAAMNDLIRPTLYSAWQDIVPVSPRQGEAHV--YDLVGPICETGDFIGKD 353
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L +G L V AGAY MAS YN + R E V
Sbjct: 354 RSLCLA-QGDLLAVRSAGAYGFVMASNYNTRARAAEIMV 391
>gi|89074449|ref|ZP_01160926.1| putative diaminopimelate decarboxylase [Photobacterium sp. SKA34]
gi|89049737|gb|EAR55287.1| putative diaminopimelate decarboxylase [Photobacterium sp. SKA34]
Length = 416
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 231/399 (57%), Gaps = 17/399 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + + L+ E+V + + E P Y+YS+ + R+ +A+ +A+ +I YA+KA
Sbjct: 4 FNYQQNNQLWAENVPLAQLAEQY-GTPLYVYSRATLERHWKAFDEAVATHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNVLARLGSGFDIVSQGELERVIAAGGDPAKVVFSGVGKTAAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNAVAEELGVTAPISLRINPDVDAKTHPYISTGLRDNKFGIVFDRAVEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L++VG CH+GS +T + F DA ++ +D+++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPH-LQVVGMDCHIGSQLTDITPFIDATDRLLALVDELKAEGIHIQHLDLGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVK 360
G+ Y P+P + +L+R +L LI EPGR++ AN L+ V +K
Sbjct: 242 GVTYNDEQP--PQPSDYASA----LLARLENYPDLELIFEPGRAIAANAGVLLTKVEFLK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +LIRP+LY A+Q I VSP +A + +D+VGP+CE+ DF+GK+
Sbjct: 296 HTEHKNFAIVDAAMNDLIRPTLYSAWQDIVPVSPRQGEAHV--YDLVGPICETGDFIGKD 353
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L +G L V AGAY MAS YN + R E V
Sbjct: 354 RSLCLA-QGDLLAVRSAGAYGFVMASNYNTRARAAEIMV 391
>gi|422296262|ref|ZP_16383935.1| diaminopimelate decarboxylase [Pseudomonas avellanae BPIC 631]
gi|407992623|gb|EKG34212.1| diaminopimelate decarboxylase [Pseudomonas avellanae BPIC 631]
Length = 415
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAFADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DE--VPPLAGDYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|66043452|ref|YP_233293.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B728a]
gi|422672763|ref|ZP_16732126.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aceris str.
M302273]
gi|424070059|ref|ZP_17807499.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
gi|63254159|gb|AAY35255.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B728a]
gi|330970500|gb|EGH70566.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aceris str.
M302273]
gi|408001459|gb|EKG41767.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. avellanae
str. ISPaVe037]
Length = 415
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|402701240|ref|ZP_10849219.1| diaminopimelate decarboxylase [Pseudomonas fragi A22]
Length = 415
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL+G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALTAIAERF-GTPTYVYSRAHIEAQYNAFANALDGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T ++ F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLEPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D + +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDTQARAYDIVGPICETGDFLAKDRQLALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEILV 389
>gi|350552839|ref|ZP_08922031.1| diaminopimelate decarboxylase [Thiorhodospira sibirica ATCC 700588]
gi|349792803|gb|EGZ46651.1| diaminopimelate decarboxylase [Thiorhodospira sibirica ATCC 700588]
Length = 429
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 223/395 (56%), Gaps = 19/395 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ V P Y+YS+ Q+T N +A+ QAL +I YA+KAN++
Sbjct: 8 DGRLHLEGVDLRTVAAQYNT-PCYVYSQAQLTANWQAFDQALGEHPHLICYAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
IL+ L +LG G +VSG EL +RAG DP K +F+G GK +++ A G+ NV+S
Sbjct: 67 ILQQLARLGSGFDIVSGGELARVIRAGGDPAKVVFSGVGKRHDEMRAALTAGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
+L + + G K + LR+NPDVD HPY++TG K +KFG+ +E + + A
Sbjct: 127 SAELYRLNALAGEMGLKAPIALRVNPDVDAGTHPYISTGLKENKFGVDIDEAVSLYRQAA 186
Query: 250 K-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
AH L++ G CH+GS +T + F DA ++ + G + +L++GGGLGI
Sbjct: 187 TLAH---LEIKGLACHIGSQLTSLAPFLDALQRVLTLTQALAQIGITLQHLDLGGGLGIR 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y H P P + + + +++EPGR+++ N L+ V +K K F
Sbjct: 244 YRHE--TPPTPHDYGRALLAELAPLPYEILLEPGRAIVGNAGILLTRVEYLKQAPDKQFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHI----ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
++D SM+EL+RP+LYDA+Q I E +PA + FD+VGPVCESADFLGK+R L
Sbjct: 302 IVDASMSELLRPALYDAWQEIIPVVEHATPAK-----TLFDIVGPVCESADFLGKQRSL- 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L + AGAY M+S YN + RP E +
Sbjct: 356 SLHEGDLLAICSAGAYGYCMSSNYNSRTRPAEVMI 390
>gi|414165228|ref|ZP_11421475.1| diaminopimelate decarboxylase [Afipia felis ATCC 53690]
gi|410883008|gb|EKS30848.1| diaminopimelate decarboxylase [Afipia felis ATCC 53690]
Length = 421
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 146/406 (35%), Positives = 217/406 (53%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV V + ETV PFY YS + R+ + +A GL++++ YA+
Sbjct: 2 HHFHYR-DGVLHAEDVDVSRLAETV-GTPFYCYSTATLERHYRVFTEAFAGLDTLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG GA +VSG EL A AG K +F+G GK +L A E +
Sbjct: 60 KANSNQSVLRTLARLGAGADVVSGGELMRARAAGIPAEKIVFSGVGKTEAELRQALAENI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +LE + + G + LR+NPD+ H ++TG +KFGI E +
Sbjct: 120 LCINVESEPELELLSRIAHETGTTARISLRLNPDIGAGGHAKISTGKSENKFGIPLEGAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +++ G H+GS IT + A L+V+++ +R+ G +D+++ GG
Sbjct: 180 AVYARAAKLPG-IRVTGVDMHIGSQITDLGPMEAAFTLLVDFVRTLRSDGHVIDHIDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y V P P + V+ + + L+ EPGR ++ N LV+ V VK
Sbjct: 239 GLGIPYESDLPVPPAPDAYAEVVKRVTRGLDCTLMFEPGRMIVGNAGILVSRVIYVKHGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF++ID +M +LIRP+LY+A+ I V AE DVVGPVCE+ D+L R L
Sbjct: 299 ARNFVIIDAAMNDLIRPTLYEAHHEILPVRETSLQAEGIVADVVGPVCETGDYLALGRHL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G + V +GAY A TYN + PE V+ ++ P
Sbjct: 359 PALKAGDLVAVMSSGAYGAVQAGTYNTRGLVPEVLVKGDQYAVVRP 404
>gi|187930324|ref|YP_001900811.1| diaminopimelate decarboxylase [Ralstonia pickettii 12J]
gi|187727214|gb|ACD28379.1| diaminopimelate decarboxylase [Ralstonia pickettii 12J]
Length = 423
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 228/395 (57%), Gaps = 13/395 (3%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L E V + D + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 11 RQEGALMIEGVAL-DAIAAQFGTPTYVYSRAALTANYRAYAAACEGRNAHVQYAMKANSN 69
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VS EL+ LRAG +K +F+G GK +++ A + GV NV
Sbjct: 70 LAVLQVFAQLGAGFDIVSAGELKRVLRAGAPASKVVFSGVGKSADEMRFALEVGVACFNV 129
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ +++ A
Sbjct: 130 ESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYRA 189
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L +VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 190 AAAMPN-LHVVGIDCHIGSQITEVSPYLDALDKVLDVVTQLDAEGIHLSHIDVGGGLGIT 248
Query: 309 YYHTGAVLPK----PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
Y T P R L+D V + + ++ EPGRSL+ N L+ V +K +
Sbjct: 249 Y--TDETPPDITAFARTLLDRVEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEYLKPGAS 305
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +L RP++Y+AY HI V + Q A + +DVVGPVCES D+LG++R L
Sbjct: 306 KNFCIVDAAMNDLARPAMYEAYHHIVPVRES-QSAPVV-YDVVGPVCESGDWLGRDRSLA 363
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 364 V-QPGDVLAILSAGAYGFTMSSNYNTRNRAAEVIV 397
>gi|407697842|ref|YP_006822630.1| diaminopimelate decarboxylase [Alcanivorax dieselolei B5]
gi|407255180|gb|AFT72287.1| Diaminopimelate decarboxylase [Alcanivorax dieselolei B5]
Length = 413
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 224/391 (57%), Gaps = 13/391 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY E++ + + E P Y+YS+ + + A+ A + YA+KAN+N
Sbjct: 8 DGTLYVEELPLTLLAERF-GTPLYVYSRAALETHYRAFDDAFGDHPHQVCYAVKANSNVA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L + G G +VSG EL LRAG DP K +F+G GK +++ A Q G+ NV+S
Sbjct: 67 VLNVLARCGAGFDIVSGGELERVLRAGGDPDKIVFSGVGKTADEMARALQIGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + G++ + +R+NPDVD Q HPY++TG K +KFG+ K
Sbjct: 127 AAELELLNLVAGELGQEAPIAIRVNPDVDAQTHPYISTGLKENKFGVDIRKAPALYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ ++++G CH+GS +T+++ F DA ++ + +++ G E+ +L++GGGLG+ Y
Sbjct: 187 ELPH-IRILGIDCHIGSQLTRLEPFEDALERVLALLTELQELGIEIHHLDLGGGLGVTYN 245
Query: 311 HTGAVLPKPRNLIDTVRELV--LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
P D V L+ + L + IEPGR++ AN + V +K +NF
Sbjct: 246 DE-----TPPAHEDYVAALLRHIPGELPVHIEPGRAIAANAGVFLTQVLFLKPTEHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++DG+M +LIRPSLY A+Q ++V P +A+ +D+VGPVCE+ DFLGK+R L +
Sbjct: 301 IVDGAMNDLIRPSLYSAWQ--DIVPVTPHEADCRDWDIVGPVCETGDFLGKDRALAL-EA 357
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +MAS YN + RP E V
Sbjct: 358 GDLLAVRSAGAYGFAMASNYNSRGRPAEILV 388
>gi|421503008|ref|ZP_15949960.1| diaminopimelate decarboxylase [Pseudomonas mendocina DLHK]
gi|400346465|gb|EJO94823.1| diaminopimelate decarboxylase [Pseudomonas mendocina DLHK]
Length = 415
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSALAQRF-GTPTYVYSRAHIEAQYRAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG +P++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G K V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 127 SVELERLQKVAAELGLKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T ++ F DA ++ +D++ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LEVVGVDCHIGSQLTTLEPFLDALDRLLLLVDRLAARGIHIRHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VR+ + R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEQP--PLAGDYIAAVRKRLAGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSPVQ--PRDGEARHYDLVGPICETGDFLAKDRQL-VLEEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|339489960|ref|YP_004704488.1| diaminopimelate decarboxylase [Pseudomonas putida S16]
gi|338840803|gb|AEJ15608.1| diaminopimelate decarboxylase [Pseudomonas putida S16]
Length = 415
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVGLSAIAERY-GTPTYVYSRAHIEAQYRSYADALQGTEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA ++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEEP--PLVADYIKAIRERVGDRDLALVFEPGRYIVANAGVLLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFLGK+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVK--PRAGEGRAYDLVGPICETGDFLGKDRVLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVQSAGAYGFVMSSNYNTRGRCAEILV 389
>gi|258625070|ref|ZP_05719989.1| diaminopimelate decarboxylase [Vibrio mimicus VM603]
gi|258582621|gb|EEW07451.1| diaminopimelate decarboxylase [Vibrio mimicus VM603]
Length = 449
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 230/398 (57%), Gaps = 15/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 26 FNYQDDGQLWAEQVPLADLANQYGT-PLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 84
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 85 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 144
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 145 FNVESERELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 204
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 205 YRLAHSLSN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 263
Query: 306 GIDYYHTGAVLPKP----RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
G+ Y + P+P + L+D + R+L LI EPGR++ AN LV V +K
Sbjct: 264 GVVY--RDELPPQPSEYAKALLDRLER---HRDLELIFEPGRAIAANAGVLVTKVEFLKH 318
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF +ID +M +LIRP+LY A+Q +++ P+ E +D+VGPVCE++DFLGK+R
Sbjct: 319 TEHKNFAIIDAAMNDLIRPALYQAWQ--DIIPLRPRQGEAQTYDLVGPVCETSDFLGKDR 376
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+L + G L V +GAY +M+S YN + R E V
Sbjct: 377 DL-VLEEGDLLAVRSSGAYGFTMSSNYNSRPRVAEVMV 413
>gi|423204986|ref|ZP_17191542.1| diaminopimelate decarboxylase [Aeromonas veronii AMC34]
gi|404624807|gb|EKB21625.1| diaminopimelate decarboxylase [Aeromonas veronii AMC34]
Length = 416
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 231/395 (58%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G++Y P P + +++ + R+L L+ EPGR+++AN L+ V +K T+
Sbjct: 242 GVNY--GSEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGETR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF +ID M +++RPSLY A+ + IE+ S A + +DVVGPVCE+ DFLGKER L
Sbjct: 300 NFALIDAGMNDMLRPSLYGAWMNIIEVDSRAGHTPAL--YDVVGPVCETGDFLGKERTLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G+ L V AGAY +M+S YN + R E V
Sbjct: 358 IAE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|375129574|ref|YP_004991671.1| diaminopimelate decarboxylase [Vibrio furnissii NCTC 11218]
gi|315178745|gb|ADT85659.1| diaminopimelate decarboxylase [Vibrio furnissii NCTC 11218]
Length = 417
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 227/399 (56%), Gaps = 23/399 (5%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + + E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVSLAQLAEDY-GTPLYVYSRATLERHWHAFDKSVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGV 184
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ LA +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSAGELERVVAAGGDPAKVVFSGVGKTAAEMKRALALKIKC 122
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE---- 240
F NV+SE +LE + + G K + LRINPDVD + HPY++TG +++KFGI +
Sbjct: 123 F-NVESESELERLNQVAGEMGVKAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPD 181
Query: 241 --KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+L LD + H G CH+GS +T ++ F DA ++ ID ++A+G + +
Sbjct: 182 VYRLAQRLDHISIH-------GIDCHIGSQLTAIEPFIDATDRLLALIDNLKAEGIHIKH 234
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVT 357
L++GGGLG+ Y + P+P + L + L LI EPGR++ AN L+ V
Sbjct: 235 LDVGGGLGVVY--RDELPPQPSEYAKALLSRLANHQELELIFEPGRAIAANAGVLLTRVE 292
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K KNF +ID +M +L+RP+LY A+Q I VS P++ +D+VGPVCE+ DFL
Sbjct: 293 YLKHTEHKNFAIIDAAMNDLMRPALYQAWQDIVPVS--PREGAALTYDLVGPVCETGDFL 350
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
GK+R L +G L V AGAY +M+S YN + R E
Sbjct: 351 GKDRSL-VLQQGDLLAVRSAGAYGFAMSSNYNTRTRAAE 388
>gi|339482990|ref|YP_004694776.1| diaminopimelate decarboxylase [Nitrosomonas sp. Is79A3]
gi|338805135|gb|AEJ01377.1| diaminopimelate decarboxylase [Nitrosomonas sp. Is79A3]
Length = 417
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 141/394 (35%), Positives = 225/394 (57%), Gaps = 8/394 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V ++ + + P Y+YS+ +T+ + A + +I YA+KAN+N IL
Sbjct: 14 LYAESVPLKQIADEF-GTPCYVYSRSALTQAYLEFDSAFANRDHLICYAVKANSNIAILN 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL ++AG DP K +F+G GK ++ LA + NV+SE +
Sbjct: 73 LLAQLGSGFDIVSGGELLRVIKAGGDPKKIVFSGVGKNTYEMRLALDADILCFNVESEAE 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L + ++ GK V LR+NP+VD + HPY++TG K +KFGI + + + +
Sbjct: 133 LITLNQTAKDMGKIAPVSLRVNPNVDAKTHPYISTGLKENKFGIPASEAEKIYRSAHQYA 192
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ ++ G CH+GS +T+++ F A+ M+N +D +++QG E+ +L++GGGLGI Y T
Sbjct: 193 H-IRFTGLDCHIGSQLTELEPFMQASNKMLNLLDTLQSQGLEITHLDLGGGLGIRY--TN 249
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + + + L+IEPGRSL+ N L+ + +K ++NF ++D +
Sbjct: 250 ETPPSINDYVSALCACTQQVKQRLLIEPGRSLVGNAGILLTRIEYLKHTPSRNFAIVDAA 309
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L+RP+LYDAY E++ EI + +VGPVCE+ DFLG +R+L + G L
Sbjct: 310 MNDLMRPALYDAYH--EILPVIRNKEEIKNYQIVGPVCETGDFLGHDRKLGLIN-GDLLA 366
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY MSM+S YN + R E + + II
Sbjct: 367 IMSAGAYGMSMSSNYNTRPRATEIMIDKNTTHII 400
>gi|343513149|ref|ZP_08750259.1| diaminopimelate decarboxylase [Vibrio scophthalmi LMG 19158]
gi|342793729|gb|EGU29518.1| diaminopimelate decarboxylase [Vibrio scophthalmi LMG 19158]
Length = 417
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + D+ E P Y+YS+ + R+ A+ +A+ ++ +A+KA
Sbjct: 4 FNYQDDGQLWAEEVPLSDLAEQF-GTPLYVYSRATLERHWHAFDKAVGEHPHLVCFAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK ++ A + G+
Sbjct: 63 NSNIGVLNTLARLGSGFDIVSGGELERVIAAGGEPSKVVFSGLGKTEAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K V LRINPDVD Q HPY++TG + +KFGI ++
Sbjct: 123 FNVESEPELERLNKVAAELGVKAPVSLRINPDVDAQTHPYISTGLRENKFGIAFDRAPVV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L + G CH+GS +T ++ F DA ++ ID+++++G + +L++GGGL
Sbjct: 183 YELAVQLPH-LDVKGIDCHIGSQLTDLEPFIDATDRLLALIDELKSKGINIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLGRLDNHQDLELIFEPGRAICANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+D +DVVG +CE++DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVTPRDGAAKDYDVVGAICETSDFLGKDRSLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 358 LEPNDL-LAVRSAGAYGFVMSSNYNTRTRAAEVMV 391
>gi|197336405|ref|YP_002157271.1| diaminopimelate decarboxylase [Vibrio fischeri MJ11]
gi|197317895|gb|ACH67342.1| diaminopimelate decarboxylase [Vibrio fischeri MJ11]
Length = 417
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K DG L+ E++ + + E P Y+YS+ + R+ +A+ ++ ++ YA+KA
Sbjct: 4 FNYKDDGQLWAEELPITQLAEQF-GTPLYVYSRATLERHWKAFDNSVGNHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DPTK +F+G GK +++ A + +
Sbjct: 63 NSNIGVLNALARLGSGFDIVSQGELERVVAAGGDPTKVVFSGVGKTADEMRRALELKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNAVAAEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T ++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LDVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVNIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + L ++L LI EPGR++ AN LV V +K
Sbjct: 242 GVVYRDE--LPPQPSEYATALLGRLAEHQDLELIFEPGRAIAANAGILVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P DA+ +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVVPHEGDAQ--NYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V +GAY M+S YN + R E V
Sbjct: 357 VLEANDLLAVRSSGAYGFVMSSNYNTRCRAAEIMV 391
>gi|395781424|ref|ZP_10461842.1| diaminopimelate decarboxylase [Bartonella rattimassiliensis 15908]
gi|395420857|gb|EJF87115.1| diaminopimelate decarboxylase [Bartonella rattimassiliensis 15908]
Length = 424
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 137/409 (33%), Positives = 230/409 (56%), Gaps = 13/409 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + V PFY YS + + Y++A +G++S+I YA+KA
Sbjct: 3 FFSYHKGILHAEGCSLAILAQKV-GTPFYCYSANALVTRFKDYQKAFQGMSSLIAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N IL+ L G GA +VS ELR AL G + +++G GK + ++ A + ++
Sbjct: 62 NSNQAILQLLAINGAGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQNIYC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + K V LRINPDVD + H + TG +KFGI
Sbjct: 122 FNVESESELEQLSQRAVALSKTARVSLRINPDVDAKTHKKITTGKSENKFGIP------L 175
Query: 246 LDAVKAHPNE-----LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L A +A+ L++ G H+GS I ++ F +A +++ + + ++ + G+ + +++
Sbjct: 176 LLAREAYKKAVSLPGLQVCGIDMHIGSQICDLNPFEEAFIIIADLVRQLWSDGYTITHID 235
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
IGGGLGI Y +P P + V++ + +N+++EPGRS++ L+ V +K
Sbjct: 236 IGGGLGIAYGCETHTVPSPFDYAALVKKHIAPLGINIVVEPGRSIVGQAGVLMTSVLYLK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
+NF+++D +M +L+RP+LYDA+Q++ L+ AP+DA + + D+VG +CE+ D+L +
Sbjct: 296 RGQGRNFVIVDAAMNDLMRPTLYDAWQNVVLIKQAPKDAPLIRADIVGSICETGDYLALD 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R LP G L + GAY MASTYN ++ PE V++ +I P
Sbjct: 356 RCLPILASGDLLAITQTGAYGAVMASTYNSRLLVPEILVQNTRYAVIRP 404
>gi|260767552|ref|ZP_05876488.1| diaminopimelate decarboxylase [Vibrio furnissii CIP 102972]
gi|260617452|gb|EEX42635.1| diaminopimelate decarboxylase [Vibrio furnissii CIP 102972]
Length = 417
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 227/399 (56%), Gaps = 23/399 (5%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + + E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVSLAQLAEDY-GTPLYVYSRATLERHWHAFDKSVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGV 184
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ LA +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSAGELERVVAAGGDPAKVVFSGVGKTAAEMKRALALKIKC 122
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE---- 240
F NV+SE +LE + + G K + LRINPDVD + HPY++TG +++KFGI +
Sbjct: 123 F-NVESESELERLNQVAGEMGVKAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPD 181
Query: 241 --KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
+L LD + H G CH+GS +T ++ F DA ++ ID ++A+G + +
Sbjct: 182 VYRLAQRLDHISIH-------GIDCHIGSQLTAIEPFIDATDRLLALIDNLKAEGIHIKH 234
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVT 357
L++GGGLG+ Y + P+P + L + L LI EPGR++ AN L+ V
Sbjct: 235 LDVGGGLGVVY--RDELPPQPSEYAKALLSRLANHQELELIFEPGRAIAANAGVLLTRVE 292
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K KNF +ID +M +L+RP+LY A+Q I VS P++ +D+VGPVCE+ DFL
Sbjct: 293 YLKHTEHKNFAIIDAAMNDLMRPALYQAWQDIVPVS--PREGAALTYDLVGPVCETGDFL 350
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
GK+R L +G L V AGAY +M+S YN + R E
Sbjct: 351 GKDRSL-VLQQGDLLAVRSAGAYGFAMSSNYNTRTRAAE 388
>gi|261250031|ref|ZP_05942608.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417955623|ref|ZP_12598634.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260939535|gb|EEX95520.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342812554|gb|EGU47551.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 417
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + ++ + P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVSLTELAQQF-GTPLYVYSRATLERHWNAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG D K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNALARLGSGFDIVSGGELERVIAAGGDAAKVVFSGVGKTEAEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ N L + G CH+GS +T ++ F DA ++ ID ++AQG +++L++GGGL
Sbjct: 183 YKFAQSLDN-LDVRGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVTIEHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSEYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVIPREGEAVAYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN + R E V
Sbjct: 358 LEENDL-LAVRSAGAYGFVMSSNYNTRSRAAEVMV 391
>gi|397685611|ref|YP_006522930.1| diaminopimelate decarboxylase [Pseudomonas stutzeri DSM 10701]
gi|395807167|gb|AFN76572.1| diaminopimelate decarboxylase [Pseudomonas stutzeri DSM 10701]
Length = 415
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 151/398 (37%), Positives = 226/398 (56%), Gaps = 15/398 (3%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 AFSYR-DGQLFAEGVALPALAQRFGT-PTYVYSRAHIEAQYRAYADALSGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG P + +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGKPERIVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + + G V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 121 CFNVESTDELERLQLVAAELGVIAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAE- 179
Query: 245 FLDAVKAHPNE---LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
AV A +E LK+VG CH+GS +T + F DA ++ ID + +G + +L++
Sbjct: 180 ---AVYARADELSNLKVVGVDCHIGSQLTTLPPFLDALDRLLALIDHLAVRGIRIRHLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLG+ Y P + I VR+ + R+L L+ EPGRS++AN L+ V +K
Sbjct: 237 GGGLGVRYRDEQP--PLAGDYIKAVRQRIEGRDLALVFEPGRSIVANAGLLLTRVEYLKH 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
K+F ++D +M +LIRP+LY A+ +++V P++ E+ +D+VGP+CE+ DFL KER
Sbjct: 295 TEHKDFAIVDAAMNDLIRPALYQAW--MDVVPVQPRNGEVRHYDIVGPICETGDFLAKER 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + G L V AGAY M+S YN + R E V
Sbjct: 353 PLALAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|406674762|ref|ZP_11081956.1| diaminopimelate decarboxylase [Aeromonas veronii AMC35]
gi|404628765|gb|EKB25540.1| diaminopimelate decarboxylase [Aeromonas veronii AMC35]
Length = 416
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 230/394 (58%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ ADG L E +Q + E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDADGQLQAEQTSLQQLAEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPGKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G++Y P P + +++ + R+L L+ EPGR+++AN L+ V +K + T+
Sbjct: 242 GVNY--GSEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPSETR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF +ID M +++RPSLY A+ +I V A + +DVVGPVCE+ DFLGKER L
Sbjct: 300 NFALIDAGMNDMLRPSLYGAWMNIIEVDSRAGHAP-ALYDVVGPVCETGDFLGKERTLAI 358
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G+ L V AGAY +M+S YN + R E V
Sbjct: 359 AE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|207744536|ref|YP_002260928.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
IPO1609]
gi|206595942|emb|CAQ62869.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
IPO1609]
Length = 407
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 214/370 (57%), Gaps = 8/370 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ +T N AY A EG N+ + YA+KAN+N +L+ +LG G +VSG ELR
Sbjct: 17 PTYVYSRAALTANYRAYAAACEGRNARVQYAMKANSNLAVLQIFAQLGAGFDIVSGGELR 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG +F+G GK +++ LA + GV NV+S +L + + GK V
Sbjct: 77 RVLAAGGKAADVVFSGVGKTADEMRLALEAGVACFNVESIPELHRLNEVAGSLGKTAPVS 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K +KFG+ E++ A A PN L++VG CH+GS IT+
Sbjct: 137 LRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYRAAAAMPN-LRVVGIDCHIGSQITE 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA--VLPKPRNLIDTVREL 329
V + DA +++ + ++ +G + ++++GGGLGI Y + R L+D + +
Sbjct: 196 VSPYLDAIDKVLDVVARLDGEGIRLSHIDVGGGLGITYTDETPPDITAFARTLLDRIEQR 255
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
+ ++ EPGRSL+ N L+ V +K KNF ++D +M +L RP++Y+AY HI
Sbjct: 256 GFG-DRTVLFEPGRSLVGNAGLLLTRVEFLKPGAAKNFCIVDAAMNDLARPAMYEAYHHI 314
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
V A + +DVVGPVCES D+LG++R L G L + AGAY +M+S YN
Sbjct: 315 VPVRERSGAATV--YDVVGPVCESGDWLGRDRALDVQP-GDLLAILSAGAYGFTMSSNYN 371
Query: 450 LKMRPPEYWV 459
+ R E V
Sbjct: 372 TRNRAAEVIV 381
>gi|423687220|ref|ZP_17662028.1| diaminopimelate decarboxylase [Vibrio fischeri SR5]
gi|371493619|gb|EHN69220.1| diaminopimelate decarboxylase [Vibrio fischeri SR5]
Length = 417
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K DG L+ E++ + + E P Y+YS+ + R+ +A+ ++ ++ YA+KA
Sbjct: 4 FNYKDDGQLWAEELPITQLAEQF-GTPLYVYSRATLERHWKAFDNSVGNHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DPTK +F+G GK +++ A + +
Sbjct: 63 NSNIGVLNALARLGSGFDIVSQGELERVVAAGGDPTKVVFSGVGKTADEMRRALELKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNAVAAEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T ++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LDVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVNIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + L ++L LI EPGR++ AN LV V +K
Sbjct: 242 GVVYRDE--LPPQPSEYATALLGRLAEHQDLELIFEPGRAIAANAGILVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P DA+ +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVVPREGDAQ--NYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V +GAY M+S YN + R E V
Sbjct: 357 VLEANDLLAVRSSGAYGFVMSSNYNTRCRAAEIMV 391
>gi|424065381|ref|ZP_17802859.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
gi|408003405|gb|EKG43590.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. avellanae
str. ISPaVe013]
Length = 415
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLAGRDLGLLFEPGRFIVANAGALLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRVYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|326796187|ref|YP_004314007.1| diaminopimelate decarboxylase [Marinomonas mediterranea MMB-1]
gi|326546951|gb|ADZ92171.1| diaminopimelate decarboxylase [Marinomonas mediterranea MMB-1]
Length = 417
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 152/404 (37%), Positives = 228/404 (56%), Gaps = 10/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L+ E+V ++ V E P Y+YS+ R+ AY A +++ YA+KA
Sbjct: 3 FFNYTDQTLFAENVSLETVAEQF-GTPTYVYSRATFERHYNAYADAFASHPTLVCYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
+N IL L KLG G +VS EL +RAG DP+K +F+G GK ++ A + G+
Sbjct: 62 CSNIAILNVLAKLGAGFDIVSIGELERVVRAGGDPSKVMFSGLGKQEHEMRRALELGIHC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI--RNEKLQ 243
NV+SE +L + + G K V +R+NPDVD + HPY++TG K +KFGI ++
Sbjct: 122 FNVESEPELYRLNKVAGELGVKAPVSMRVNPDVDAKTHPYISTGLKENKFGIDIKDAPRI 181
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ + AH L ++G CH+GS +T++ F D ++ ID++ G E+ ++++GG
Sbjct: 182 YQVANEMAH---LNVMGVDCHIGSQLTELKPFLDTFDRLITLIDELAGLGIEIKHMDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y V P+P + + + + R+++L EPGRS+ AN L+ V +K
Sbjct: 239 GLGVRYRDE--VPPEPADYAQLILDKMKGRDISLAFEPGRSIAANAGLLLTKVEFLKCTE 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF VIDG+M +LIRPSLY A+ +I V+ +D+VGPVCE+ DFLGK+REL
Sbjct: 297 HKNFAVIDGAMNDLIRPSLYSAWMNIVPVNLEATSEGKRIYDLVGPVCETGDFLGKDREL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
G L V AGAY +MAS YN + R E V ++ +I
Sbjct: 357 DI-QAGDLLAVRSAGAYGFTMASNYNSRNRAAEVMVDGDVAHLI 399
>gi|372269307|ref|ZP_09505355.1| diaminopimelate decarboxylase [Alteromonas sp. S89]
Length = 419
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 151/388 (38%), Positives = 219/388 (56%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V ++ + E P Y+YS+ R AY AL +I YAIKAN+N I
Sbjct: 9 GSLWAEGVSLEQIAEQF-GTPTYVYSRAHYERQYRAYADALGDHPGLICYAIKANSNLGI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG DP K +F+G GK +++ A GV NV+SE
Sbjct: 68 LSVLAQLGAGFDIVSAGELERVLMAGGDPAKVVFSGVGKTADEMRRALSVGVHCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ + + G V LR+NPDVD HPY++TG K +KFGI E+ + + A
Sbjct: 128 SELDRLEAVAAEMGVAAPVSLRVNPDVDANTHPYISTGLKENKFGIAIERARAVYARI-A 186
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
L VG CH+GS +T++ F DA ++ ID++ G ++ +L++GGGLG+ Y
Sbjct: 187 DSQSLNAVGVDCHIGSQLTELAPFLDALDRLLLLIDELAEDGTKLKHLDLGGGLGVRY-- 244
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G P+ + + V+E + R L L++EPGRS+ AN L+ V +K NF ++D
Sbjct: 245 RGEEPPQVSDYLGAVKERLAGRELELVLEPGRSIAANGGALLTKVEFLKRTEEHNFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M + +RP+LY A+Q I V+P+ D E +D+VGPVCE+ DFLGK R L + G
Sbjct: 305 AAMNDNLRPALYQAWQDIVAVTPSNGDTE--SWDIVGPVCETGDFLGKHRSLAL-EEGQL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY +M+S YN + R E V
Sbjct: 362 LAMLSAGAYGFTMSSNYNSRTRAAEVLV 389
>gi|313683044|ref|YP_004060782.1| diaminopimelate decarboxylase [Sulfuricurvum kujiense DSM 16994]
gi|313155904|gb|ADR34582.1| diaminopimelate decarboxylase [Sulfuricurvum kujiense DSM 16994]
Length = 400
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 7/368 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y ++ E+ K+A G SI+ YA+KAN+N +++H +LG GA VS E+R
Sbjct: 14 PLYVYDFDKMKTQFESLKEAFRGRKSILAYAVKANSNLSVVKHFAQLGSGADCVSIGEVR 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL AG + IF+G GK +++ A + + ++NV+SE +L + + +R G K +
Sbjct: 74 RALMAGVPKYRIIFSGVGKRDDEIREAIESDILYINVESEAELGRVEMIARELGAKARIS 133
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP++DP+ HPY++TG ++KFG+ + K + + L VG H H+GS +T+
Sbjct: 134 IRVNPNIDPKTHPYISTGLHDNKFGVEIVAAKRMYIQAK-NSDHLDPVGIHFHIGSQLTE 192
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ +AAV++ + + ++A E+ + +IGGGLG+ Y + + +P + + +
Sbjct: 193 LEPIYEAAVIVADLLRSLQAIDIELKFFDIGGGLGVRYDNETTI--EPYDYAQAILSALK 250
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
++ +I EPGR L AN + V K NG K F+++DG+M +LIRPSLY AY IE
Sbjct: 251 GIDVTIICEPGRFLTANAGYFLTKVLYEKNNGAKRFVMVDGAMNDLIRPSLYKAYHRIEA 310
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+ + E S DVVGPVCES DFL K LP + LV+H AGAY M S YN +
Sbjct: 311 LD---KSGEESIADVVGPVCESGDFLAKNYPLPPMEHNDLLVIHSAGAYGFGMGSNYNTR 367
Query: 452 MRPPEYWV 459
R E V
Sbjct: 368 GRSAEIAV 375
>gi|262273212|ref|ZP_06051028.1| diaminopimelate decarboxylase [Grimontia hollisae CIP 101886]
gi|262222790|gb|EEY74099.1| diaminopimelate decarboxylase [Grimontia hollisae CIP 101886]
Length = 417
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 226/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ ED+ + + P Y+YS+ + R+ A+ +A+ +I YA+KA
Sbjct: 4 FNYQDDGQLWAEDLPLAQLAGQY-GTPLYVYSRATLERHWHAFDKAVGDHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNVLARLGSGFDIVSQGELERVVAAGGDPKKVVFSGVGKTAPEMARALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + GKK V LRINPDVD + HPY++TG K +KFGI ++ +
Sbjct: 123 FNVESEAELDRLNQIAGELGKKAPVSLRINPDVDAKTHPYISTGLKENKFGIAFDRAREV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L + G CH+GS +T + F ++ ++ ID +R G + +L++GGGL
Sbjct: 183 YHYANSLPH-LDVHGIDCHIGSQLTDLAPFIESTDRLLGLIDDLRQDGIHITHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y P+P + + E L + + L+ EPGR++ AN L+ V +K N
Sbjct: 242 GVTYNDEKP--PEPSDYAKALLERLANHQEIELVFEPGRAIAANAGVLLTKVEFLKHNEE 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q E+V P+ E +D+VGPVCE+ D+LGK+R L
Sbjct: 300 KNFAIIDAAMNDLLRPALYQAWQ--EIVPVKPRQGEAKTYDLVGPVCETGDYLGKDRSL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY M+S YN + R E V
Sbjct: 357 VLEAGDLLAVRSSGAYGFVMSSNYNTRCRAAEVMV 391
>gi|170718155|ref|YP_001785183.1| diaminopimelate decarboxylase [Haemophilus somnus 2336]
gi|168826284|gb|ACA31655.1| diaminopimelate decarboxylase [Haemophilus somnus 2336]
Length = 417
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 225/390 (57%), Gaps = 8/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L E+V V+ + E P Y+YS+ + R+ A+ AL +I +A+K+N N
Sbjct: 8 DGHLMAENVSVKKIAEQF-GTPAYIYSRATLERHWHAFDNALGDHPHLICFAVKSNPNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL + +LG G +VS EL L AG DP K +F+G K +++ A + G+ NV+S
Sbjct: 67 ILNIMARLGSGFDIVSQGELERVLFAGGDPKKVVFSGVAKSEQEIARALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I +R GK ++ LR+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 127 AAELTKINQVARKMGKIASISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYRQAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
N +K+VG CH+GS +T++ F DA ++ +++++ G ++++++GGGLG+ Y
Sbjct: 187 QLEN-IKIVGIDCHIGSQLTELQPFLDATDRLIVLMEQLKKDGITLEHVDLGGGLGVTYS 245
Query: 311 HTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
A P P + E L +NL +I+EPGR++ AN L+ V +K+N +++F +
Sbjct: 246 DEKA--PHPSEYATALLEKLKNYQNLEIILEPGRAITANAGILLTRVEYIKSNESRHFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M ++IRP+LY AY +I V E +DVVGP+CE++DFLGK+R L +G
Sbjct: 304 VDTGMNDMIRPALYQAYMNIIEVDRTL-SRETKVYDVVGPICETSDFLGKQRSLAIA-QG 361
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+V AGAY SMASTYN + R E V
Sbjct: 362 DFIVQRSAGAYGASMASTYNSRPRAIEIMV 391
>gi|307943498|ref|ZP_07658842.1| diaminopimelate decarboxylase [Roseibium sp. TrichSKD4]
gi|307773128|gb|EFO32345.1| diaminopimelate decarboxylase [Roseibium sp. TrichSKD4]
Length = 424
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/410 (37%), Positives = 222/410 (54%), Gaps = 12/410 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K +G L+ EDV V+ + E V PFY YS +TR+ E + A G+++++ YA+
Sbjct: 2 HHFQYK-NGTLFAEDVSVEAIAEEV-GTPFYCYSTATLTRHYEVFSSAFVGIDTLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L LG G +VS ELR A AG + +F+G GK + A E +
Sbjct: 60 KANSNQAVLRTLSDLGAGMDVVSEGELRRARAAGVPADRILFSGVGKTEAEQAYALDEDI 119
Query: 185 F-VNVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
NV+SE +L+ + VAS+I GK V LRINPDVD + H ++TG +KFGI +
Sbjct: 120 LCFNVESEPELDQLSRVASQI-GKTARVSLRINPDVDAKTHAKISTGKAENKFGISWRRA 178
Query: 243 QWFLDAVKAHPNEL---KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
+ V AH +L ++ G H+GS IT++ F DA + I +R+ G +D++
Sbjct: 179 R----EVYAHAAKLPGIQVSGIDMHIGSQITELQPFDDAFGRLGELIADLRSDGHAIDHI 234
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
++GGGLGI Y P P V++ V + ++ EPGR + N LV+ V +
Sbjct: 235 DLGGGLGIPYVADNDPPPHPDAYAQVVKKHVDKLDCKIVFEPGRLIAGNAGILVSKVIYL 294
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K K+F+++D M +LIRP+LYDAY + V D DVVGPVCE+ D+L +
Sbjct: 295 KEGDDKHFLIVDAGMNDLIRPTLYDAYHEVRPVREPADDTPRMTADVVGPVCETGDYLAQ 354
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
RELP G + V+ AGAY + TYN + PE V +I P
Sbjct: 355 LRELPRLQSGDLIAVYSAGAYGAVQSGTYNSRPLIPEVLVNKDEFAVIRP 404
>gi|410637745|ref|ZP_11348316.1| diaminopimelate decarboxylase [Glaciecola lipolytica E3]
gi|410142713|dbj|GAC15521.1| diaminopimelate decarboxylase [Glaciecola lipolytica E3]
Length = 416
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/394 (37%), Positives = 224/394 (56%), Gaps = 16/394 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E+V VQ + E P Y+YS+ I R+ A+ A +I YA+KAN+N
Sbjct: 8 DTTLFAENVPVQQIAEQY-GTPCYVYSRATIERHWHAFDNAAGKHPHLICYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L + KLG G +VSG EL + AG DP+K +F+G GK +++ A + + NV+S
Sbjct: 67 VLSVMAKLGSGFDIVSGGELSRVIEAGGDPSKVVFSGVGKTEQEIEFALSKNILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE I + K + +R+NPDVD + HPY++TG K +KFGI E
Sbjct: 127 APELERINKVASQLDVKAPISIRVNPDVDAKTHPYISTGLKANKFGIPRENAVAIYKLAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
++ L++ G CH+GS +T + F DA ++ ID++ G + +L++GGGLG+ Y
Sbjct: 187 SY-EHLEIKGMDCHIGSQLTDIVPFVDALDRLLLLIDELADMGIAISHLDVGGGLGVAY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P ++ + + +R L LI EPGR+++AN L+ V +K KNF +
Sbjct: 245 -KDETPPHPDTYVEALMTRMKTRPELKLIFEPGRAIMANAGILITKVEFIKHGEEKNFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHI---ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-T 425
+D +M +LIRP+LY A+Q+I E+ + P+ + +D+VGP+CE+ DF+GK+REL
Sbjct: 304 VDAAMNDLIRPALYSAWQNIIPAEISTNNPK----ATYDIVGPICETGDFIGKDRELEIA 359
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
PD LVV AGAY MAS YN + RP E V
Sbjct: 360 PDD--LLVVRSAGAYGFVMASNYNSRCRPAEIIV 391
>gi|388566312|ref|ZP_10152757.1| diaminopimelate decarboxylase [Hydrogenophaga sp. PBC]
gi|388266326|gb|EIK91871.1| diaminopimelate decarboxylase [Hydrogenophaga sp. PBC]
Length = 421
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 155/408 (37%), Positives = 233/408 (57%), Gaps = 16/408 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + G L+ EDV + D + P ++YSK + + + AY++ L G +I YA+KA
Sbjct: 6 FLTQRHGELHVEDVSL-DALARAHGTPLFVYSKAAMLQALGAYQRGLAGRAHLICYAMKA 64
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGV 184
N++ IL+ L + GCG +VSG EL AL AG P + IF+G GK ++ LA G
Sbjct: 65 NSSLAILQTLVRAGCGLDIVSGGELERALAAGCAPERIIFSGVGKTRAEMRRALAVGIGC 124
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
F NV+S +L + +R AG++ V +R+NPDVD + HPY++TG K++KFGI ++++
Sbjct: 125 F-NVESRAELAVLDEVARAAGRRARVSIRVNPDVDARTHPYISTGLKDNKFGIAHDEV-- 181
Query: 245 FLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+D + A L +VG CH+GS IT+ + DA +++ ++ I G + +++ G
Sbjct: 182 -IDTYRQAAACESLDVVGIDCHIGSQITQAGPYLDALERVLDLVEAIELTGTRLHHIDFG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNL---NLIIEPGRSLIANTCCLVNHVTGV 359
GGLGIDY+ G P L + + + R ++IEPGRS++ N + V
Sbjct: 241 GGLGIDYH--GDTPPAADELWAKLLQRLDVRGFGDRQIMIEPGRSIVGNAGVCLTEVLYQ 298
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K KNF+++D +M +L RP++Y AY IE V + D +DVVGPVCES D+LG+
Sbjct: 299 KPGEHKNFLIVDAAMNDLPRPAMYQAYHRIEPVR-SRTDTTALTWDVVGPVCESGDWLGR 357
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+REL G L V AGAYCMSMAS YN + R E V + +I
Sbjct: 358 DRELAVQP-GDVLAVLSAGAYCMSMASNYNTRGRAAEVLVDGAQATVI 404
>gi|258622843|ref|ZP_05717860.1| diaminopimelate decarboxylase [Vibrio mimicus VM573]
gi|258584904|gb|EEW09636.1| diaminopimelate decarboxylase [Vibrio mimicus VM573]
Length = 439
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 230/399 (57%), Gaps = 17/399 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 26 FNYQDDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 84
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 85 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 144
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 145 FNVESERELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 204
Query: 246 LDAVKAHP-NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
AH + L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGG
Sbjct: 205 YRL--AHSLSHLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 262
Query: 305 LGIDYYHTGAVLPKP----RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
LG+ Y + P+P + L+D + R+L LI EPGR++ AN LV V +K
Sbjct: 263 LGVVY--RDELPPQPSEYAKALLDRLER---HRDLELIFEPGRAIAANAGVLVTKVEFLK 317
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+
Sbjct: 318 HTEHKNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKD 375
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R+L + G L V +GAY +M+S YN + R E V
Sbjct: 376 RDL-VLEEGDLLAVRSSGAYGFTMSSNYNSRPRVAEVMV 413
>gi|260774852|ref|ZP_05883754.1| diaminopimelate decarboxylase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609277|gb|EEX35432.1| diaminopimelate decarboxylase [Vibrio coralliilyticus ATCC BAA-450]
Length = 417
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 227/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ EDV + D+ E P Y+YS+ R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEDVPLTDLAEQF-GTPLYVYSRATFERHWNAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG + +K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSGGELERVIAAGGEASKVVFSGVGKTAPEMKRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G K + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T ++ F DA ++ ID ++AQG +++L++GGGL
Sbjct: 183 YQFAQGLKN-LTIKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGINIEHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPEPSEYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVNPREGEPVTYDLVGPICETGDFLGKDRALV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V AGAY M+S YN + R E V
Sbjct: 358 LQENDL-LAVRSAGAYGFVMSSNYNTRTRVAEVMV 391
>gi|292493805|ref|YP_003529244.1| diaminopimelate decarboxylase [Nitrosococcus halophilus Nc4]
gi|291582400|gb|ADE16857.1| diaminopimelate decarboxylase [Nitrosococcus halophilus Nc4]
Length = 416
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 226/390 (57%), Gaps = 9/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E+V + ++ P Y+YS+ I A+ QA + + YA+KAN+N
Sbjct: 8 DNTLWAEEVPLPEIASRF-GTPCYVYSRAMIEHQWRAFDQAFQDYPHRLCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG DP + +F+G GK +++ A G+ NV+S
Sbjct: 67 VLNILARLGSGFDIVSVGELERVLAAGGDPGQVVFSGVGKRADEMHRALTAGIACFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAV 249
E +L ++ + G++ V LR+NPDVD + HPY+ATG + +KFGI ++ L+ + AV
Sbjct: 127 EAELAHLNDIAGKLGRQAPVSLRVNPDVDARTHPYIATGLRENKFGIEIDQALEVYAHAV 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ ++G CH+GS +T + F A+ ++ +D++ +G EV ++++GGGLGI Y
Sbjct: 187 TL--PYIDILGVDCHIGSQLTSLSPFLAASERVLALVDQLAERGIEVRHIDLGGGLGITY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P+ +RE ++ RNL + IEPGR+++ N L+ V +K K+F +
Sbjct: 245 RDEAP--PSPQQYATALREKLVGRNLEVWIEPGRAIVGNGGVLLTRVEYLKHTPHKDFAI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L+RP+LYDA+Q I V+ + D + FDVVGPVCE+ DFLGK+R L G
Sbjct: 303 VDAAMNDLLRPALYDAWQEIIPVTIS-TDGKSHLFDVVGPVCETGDFLGKQRHLAI-GVG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV AGAY +M+S YN + R E V
Sbjct: 361 ELLVARAAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|452851414|ref|YP_007493098.1| Diaminopimelate decarboxylase [Desulfovibrio piezophilus]
gi|451895068|emb|CCH47947.1| Diaminopimelate decarboxylase [Desulfovibrio piezophilus]
Length = 412
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/398 (36%), Positives = 225/398 (56%), Gaps = 12/398 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ E+V V ++ + P Y+YS R+ +A+ A L+ + +++
Sbjct: 2 HHFEYR-NGKLFAEEVNVSELAKQY-GTPAYIYSAATFRRHFQAFDSAFSDLDHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ L + G G +VSG EL AL+AG K +++G GK ++ A + G+
Sbjct: 60 KANSNLSVLKMLAEQGAGMDVVSGGELFRALKAGVAADKIVYSGVGKRAAEIKQALEAGI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+S +L I + GK + +RINPDVDPQ HPY++TG K +KFG+ ++
Sbjct: 120 LMFNVESIAELHKINDVAEEMGKIAKISIRINPDVDPQTHPYISTGMKKNKFGL---DIE 176
Query: 244 WFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
L+A K A + ++ +G CH+GS +T + F +A ++ + ++++ + YL++
Sbjct: 177 HSLEAYKLAAKLSHIEPIGMDCHIGSQLTSISPFLEALEKLLKFYERLKEINISIQYLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y P P + E + L +I+EPGR + N +V V K+
Sbjct: 237 GGGLGISY--EEEEPPHPSEFGKALAEKLAGVPLKVILEPGRVIAGNAGIMVTEVIYTKS 294
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
N TKNF+++D M +LIRPSLY +Y I V + E ++D+VGP+CES DFL +ER
Sbjct: 295 NPTKNFLIVDAGMNDLIRPSLYGSYHRIGEVE--KNERETKEYDIVGPICESGDFLARER 352
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+LP G L V AGAY +MAS YN + R E V
Sbjct: 353 DLPEVHDGELLAVFSAGAYGFTMASNYNSRPRACELIV 390
>gi|424810760|ref|ZP_18236101.1| diaminopimelate decarboxylase [Vibrio mimicus SX-4]
gi|342322132|gb|EGU17926.1| diaminopimelate decarboxylase [Vibrio mimicus SX-4]
Length = 428
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 229/396 (57%), Gaps = 11/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 15 FNYQDDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 73
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 74 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 133
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 134 FNVESERELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 193
Query: 246 LDAVKAHP-NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
AH + L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGG
Sbjct: 194 YRL--AHSLSHLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGG 251
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
LG+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 252 LGVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTE 309
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF +ID +M +LIRP+LY A+Q +++ P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 310 HKNFAIIDAAMNDLIRPALYQAWQ--DIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDL 367
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 368 -VLEEGDLLAVRSSGAYGFTMSSNYNSRPRVAEVMV 402
>gi|56476690|ref|YP_158279.1| diaminopimelate decarboxylase [Aromatoleum aromaticum EbN1]
gi|56312733|emb|CAI07378.1| Diaminopimelate decarboxylase [Aromatoleum aromaticum EbN1]
Length = 420
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 217/386 (56%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L EDV + + E P Y+YS+ + + +AY+ AL G +++ YA+KAN+N +L
Sbjct: 17 LQIEDVPLAAIAERF-GTPTYVYSRAALEQAFDAYRDALAGRRALVCYAVKANSNLGVLA 75
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
KLG G +VSG EL L AG DP K +F+G GK ++ A G+ NV+SE +
Sbjct: 76 VFAKLGAGFDIVSGGELSRVLAAGGDPGKVVFSGVGKSAGEMRQALAAGIRCFNVESEAE 135
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + + G + + LR+NPDVDP+ HPY++TG KN+KFG+ +
Sbjct: 136 LERLDMLAGELGTRAPIALRVNPDVDPKTHPYISTGLKNNKFGVAFDTALALYRRAAGMA 195
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++ G CH+GS + +AA ++ +D++ A+G +D++++GGGLGI Y
Sbjct: 196 N-VRISGIACHIGSQLLDSGPIAEAAEKVLGLVDELAAEGIHLDHIDLGGGLGIRYRDEA 254
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + + L+ R+ L EPGRSLI N L+ + +K +NF ++D +
Sbjct: 255 P--PSVAAYLAPLLRLLDGRSEELCFEPGRSLIGNAGLLLTRIEYLKPGAERNFAIVDAA 312
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L RP+LYDAY E V+ AP+D +++VGP+CES DFL +R L G +
Sbjct: 313 MNDLARPALYDAYH--EAVAVAPRDVPERNYEIVGPICESGDFLAHDRPLAVA-AGDLVA 369
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY M+M+S YN + R E V
Sbjct: 370 LLSAGAYGMAMSSNYNTRPRAAEVIV 395
>gi|423713383|ref|ZP_17687643.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395423424|gb|EJF89619.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp. arupensis
OK-94-513]
Length = 424
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 226/408 (55%), Gaps = 8/408 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS D L+ E + + ++ V PFY YS + +++ Y+ A + S+I YA+
Sbjct: 2 HFFSYHQD-VLHVEGLSLLELARNV-GTPFYCYSASALLAHLKDYQNAFRDMPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEG 183
KAN+N +L L G GA +VS ELR L G + +++G GK +E++ A AQ+
Sbjct: 60 KANSNQAVLRLLANHGAGADVVSEGELRRVLAVGIPAHRVVYSGVGKKVEEIDFALAQDI 119
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + K V LRINP+VD + H + TG +KFGI L
Sbjct: 120 CCFNVESEPELEQLSARAVALSKTARVSLRINPNVDAKTHKKITTGKSENKFGI-PLSLA 178
Query: 244 WFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
W DA K A L + G H+GS I + F DA ++ +++ ++ G+ + +++I
Sbjct: 179 W--DAYKKAAQLPSLDVCGVDLHIGSQICDLKPFEDAFMIAADFVRQLWNDGYAITHIDI 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y H +P P + + V++ + +N+I+EPGRS++ LV V +K
Sbjct: 237 GGGLGIPYGHEQHPIPSPFDYAELVKKHIAPLGINIILEPGRSIVGEAGVLVTSVLYLKK 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+NF+++D +M + +RP+LYDA+Q + V A +A + + D+VGPVCE+ D+L R
Sbjct: 297 GEGRNFVIVDAAMNDFMRPTLYDAWQDVIPVEKASMNAPLIRADIVGPVCETGDYLALNR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G L + AGAY MASTYN ++ PE V+ + ++ P
Sbjct: 357 SMPVVVSGDLLAITGAGAYGAVMASTYNSRLLVPEVLVQDMRYAVVRP 404
>gi|350570123|ref|ZP_08938494.1| diaminopimelate decarboxylase [Neisseria wadsworthii 9715]
gi|349797408|gb|EGZ51172.1| diaminopimelate decarboxylase [Neisseria wadsworthii 9715]
Length = 406
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 211/368 (57%), Gaps = 7/368 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + +AY+ A LN +I YA+KAN+N ++ +LG G +VSG EL
Sbjct: 20 PLYVYSRAALDEAFKAYQTAFATLNPLICYAVKANSNLSVIRRFAELGSGFDIVSGGELA 79
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
L AG D K IF+G GK ++ A + GV NV+S +L+ I + GK+ +
Sbjct: 80 RVLAAGGDAGKTIFSGVGKSEAEIEFALKSGVKCFNVESLPELDRINQVAAALGKQAPIS 139
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINPDVD + HPY++TG K +KFGI + + + P+ L + G CH+GS +
Sbjct: 140 LRINPDVDAKTHPYISTGLKANKFGIAMSEAEAAYRYAASLPH-LNITGIDCHIGSQLID 198
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+ +A ++ +DK+ A G + ++++GGG+GI Y++ P + D V +++
Sbjct: 199 LAPLTEACERILLLVDKLEAAGIALQHIDLGGGVGIVYHNEQK--PDLQAYADAVAKVMD 256
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
R L++EPGRSL+ N L+ V +K K+F+++D +M +L+RP+LY AY HIE
Sbjct: 257 KRPQQLVLEPGRSLVGNAGALLTRVEFIKQGEEKHFVIVDAAMNDLMRPALYQAYHHIE- 315
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+ P DA D+VGPVCE+ DFL + R++ G LVV AGAY SMAS YN +
Sbjct: 316 -NAEPTDAAPILADIVGPVCETGDFLAQNRKIAAKP-GDLLVVRSAGAYASSMASNYNTR 373
Query: 452 MRPPEYWV 459
R E V
Sbjct: 374 ARAAEVLV 381
>gi|168704235|ref|ZP_02736512.1| diaminopimelate decarboxylase [Gemmata obscuriglobus UQM 2246]
Length = 437
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 218/409 (53%), Gaps = 26/409 (6%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CEDV V ++ E P Y+YS+ + N+ + A N +I Y++KAN N
Sbjct: 8 DRTLFCEDVPVPELAEKY-GTPLYVYSEAALVANLNEVQTAFRDANPVICYSVKANGNLS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
I + + G G + S E + AL+AG K +F G GK ++ A + GVF+ +V+S
Sbjct: 67 ICRLMGQHGSGFDVTSQGEFQRALKAGPAAAKVVFAGVGKTDSEIEFALKNGVFLFDVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L I ++ G K +V LR+NPD+ P+ H T K KFG+ E + V
Sbjct: 127 EQELHAIGAVAQKLGVKADVALRVNPDLPPKTHVKTDTSVKGVKFGLDIETIVDVAKGVV 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
HP L +VG H HLGS I K D +R A + I + RAQG ++ YLN+GGG GI+Y
Sbjct: 187 GHPG-LSVVGLHMHLGSPILKADPYRMGAEKGLGLIKQFRAQGHDIKYLNMGGGFGINYR 245
Query: 311 HTGAVLPKPRN-LIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
A KP + D + +V LI+EPGR ++ N L++ V K+ G K++++
Sbjct: 246 KDEA---KPASAFADVILPVVKESGCQLILEPGRFIVGNAAVLLSRVVFTKSTGGKHYVI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPA------------PQDAE-------ISKFDVVGPV 410
D +M +LIRP+LY ++ I V+PA P D + K DVVGPV
Sbjct: 303 QDAAMNDLIRPTLYGSFHRIWPVAPAAGVPVTPDVNGDPDDPQPFREMPNCFKQDVVGPV 362
Query: 411 CESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
CES D+L K+R LP RG L V AGAY M+M+S YN + R E V
Sbjct: 363 CESGDYLAKDRPLPGLTRGDLLAVFSAGAYGMTMSSNYNSRCRAAEVLV 411
>gi|92115227|ref|YP_575155.1| diaminopimelate decarboxylase [Chromohalobacter salexigens DSM
3043]
gi|91798317|gb|ABE60456.1| diaminopimelate decarboxylase [Chromohalobacter salexigens DSM
3043]
Length = 418
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/389 (39%), Positives = 223/389 (57%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + D+ E P Y+YS+ TR+ +AY AL +I YA+KAN+N
Sbjct: 8 DGHLHAENVPLTDIAERF-GTPCYVYSRATFTRHFKAYSDALGDHPHLICYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ L +LG G +VS EL L AG DP K +F+G K ++ A + G+ NV+S
Sbjct: 67 VLDLLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVAKQAGEMARALEVGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G+ V LR+NPDVD + HPY++TG K +KFGI ++
Sbjct: 127 LPELERLNQVAGECGQVARVSLRVNPDVDAKTHPYISTGLKANKFGIAVDEAFAVYQRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T++ F DA ++ +D++ G +++L++GGGLG+ Y
Sbjct: 187 ELPN-LEIVGLDCHIGSQLTELAPFLDALDRLLILLDRLNEAGITIEHLDLGGGLGVPYQ 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + + E + R+L L+ EPGRS+ AN ++ V +K T++F ++
Sbjct: 246 DEQP--PAPYDYARALLERLDGRDLTLLFEPGRSIAANAGVMLTRVEYLKPGETQHFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRP+LY A+Q I V Q E + +DVVGPVCE+ DFLGK REL G
Sbjct: 304 DAGMNDLIRPALYQAWQRIVPVD-TRQARETAVYDVVGPVCETGDFLGKARELAIAP-GD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MAS YN + RP E V
Sbjct: 362 LLAVRSAGAYGFVMASHYNSRPRPAELMV 390
>gi|443473866|ref|ZP_21063887.1| Diaminopimelate decarboxylase [Pseudomonas pseudoalcaligenes KF707]
gi|442904801|gb|ELS29716.1| Diaminopimelate decarboxylase [Pseudomonas pseudoalcaligenes KF707]
Length = 415
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + D+ + P Y+YS+ I AY AL L +I YA+KAN+N
Sbjct: 8 DGELFAEGVALSDIAARFDT-PTYVYSRAAIEGAYRAYADALGDLPGMICYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG ++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNLLARLGAGFDIVSSGELERVLAAGGAASRIVFSGVGKSRDDMRRALEAGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + K V LR+NPDVD HPY+ATG K +KFGI ++ +
Sbjct: 127 RNELERLQDVAEEMDLKAPVSLRVNPDVDAGTHPYIATGLKENKFGIAIDEAEEVYALAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN L+++G CH+GS +T ++ F DA +++ +D++ ++G + +L++GGGLG+ Y
Sbjct: 187 SQPN-LEVIGVDCHIGSQLTSLEPFLDALDRLLDLVDRLESRGIAIRHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + VR+ + R L L++EPGRS++AN L+ V +K K+F VI
Sbjct: 246 DEHP--PQPAEYLAAVRQRLAGRRLELLLEPGRSIVANAGVLLTRVEYLKHTEHKDFAVI 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ +++V P +D+VGP+CE+ DFL +ER L D G
Sbjct: 304 DAAMNDLIRPALYEAW--MDVVPVQPHAGPERTYDLVGPICETGDFLARERTLAL-DEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY M+S YN + R E V
Sbjct: 361 LLAIRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|120602484|ref|YP_966884.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris DP4]
gi|120562713|gb|ABM28457.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris DP4]
Length = 412
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 221/398 (55%), Gaps = 10/398 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ EDV + D+ T P Y+YS + R+ A+ A + +++
Sbjct: 2 HLFQYR-EGSLFAEDVSIIDLASTY-GTPLYVYSAGTLERHYRAFDSAFGKAAHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KA +N IL+ L LG G +VSG EL AL AG + +++G GK +++ A + +
Sbjct: 60 KACSNIHILKLLGSLGAGVDIVSGGELHRALLAGIPGRRIVYSGVGKRPDEIRSALEADI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
+ NV+S +L I + G V LRINPDVDP HPY++TG + +KFGI + L
Sbjct: 120 LMFNVESLQELRTIEEVAASMGTTARVSLRINPDVDPHTHPYISTGLQKNKFGIEMTQAL 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ ++ A + P+ + +G CH+GS +T + F +A ++ + + + G ++ YL++G
Sbjct: 180 EGYMLA-RDLPH-IDPIGIDCHIGSQLTSLSPFLEALDKVLEFREHLSILGLDISYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P PR+ V E NL L++EPGR + N LV V KT
Sbjct: 238 GGLGITYGEE--TPPHPRDFGRAVLERTKGLNLTLVLEPGRVIAGNAGILVTEVLYTKTT 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+K F+++D +M +L+RPSLY +Y I V P + + DVVGP+CES DFL ++R
Sbjct: 296 PSKQFVIVDAAMNDLVRPSLYASYHRIAEVLPHGRTEQ--AVDVVGPICESGDFLARDRV 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
LP ++G L V AGAY SM+S YN + R E VR
Sbjct: 354 LPAVEQGELLAVFSAGAYGFSMSSQYNSRPRAAEVLVR 391
>gi|46580057|ref|YP_010865.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris str.
Hildenborough]
gi|387153499|ref|YP_005702435.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris RCH1]
gi|46449473|gb|AAS96124.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233943|gb|ADP86797.1| diaminopimelate decarboxylase [Desulfovibrio vulgaris RCH1]
Length = 412
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 221/398 (55%), Gaps = 10/398 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ EDV + D+ T P Y+YS + R+ A+ A + +++
Sbjct: 2 HLFQYR-EGSLFAEDVSIIDLASTY-GTPLYVYSAGTLERHYRAFDSAFGKAAHLTCFSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KA +N IL+ L LG G +VSG EL AL AG + +++G GK +++ A + +
Sbjct: 60 KACSNIHILKLLGSLGAGVDIVSGGELHRALLAGIPGRRIVYSGVGKRPDEIRSALEADI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
+ NV+S +L I + G V LRINPDVDP HPY++TG + +KFGI + L
Sbjct: 120 LMFNVESLQELRTIEEVAASMGTTARVSLRINPDVDPHTHPYISTGLQKNKFGIEMTQAL 179
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ ++ A + P+ + +G CH+GS +T + F +A ++ + + + G ++ YL++G
Sbjct: 180 EGYMLA-RDLPH-IDPIGIDCHIGSQLTSLSPFLEALDKVLEFREHLSILGLDISYLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLGI Y P PR+ V E NL L++EPGR + N LV V KT
Sbjct: 238 GGLGITYGEE--TPPHPRDFGRAVLERTKGLNLTLVLEPGRVIAGNAGILVTEVLYTKTT 295
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
+K F+++D +M +L+RPSLY +Y I V P + + DVVGP+CES DFL ++R
Sbjct: 296 PSKQFVIVDAAMNDLVRPSLYASYHRIAEVLPHGRTEQ--TVDVVGPICESGDFLARDRV 353
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
LP ++G L V AGAY SM+S YN + R E VR
Sbjct: 354 LPAVEQGELLAVFSAGAYGFSMSSQYNSRPRAAEVLVR 391
>gi|300113121|ref|YP_003759696.1| diaminopimelate decarboxylase [Nitrosococcus watsonii C-113]
gi|299539058|gb|ADJ27375.1| diaminopimelate decarboxylase [Nitrosococcus watsonii C-113]
Length = 417
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 227/395 (57%), Gaps = 17/395 (4%)
Query: 74 FLYCEDVRVQDVMETVE-----KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
F YC +V + + E P Y+YS+ I A+ QA E I YA+KAN+
Sbjct: 5 FHYCNNVLWAEEIPLPEIASRFGMPCYIYSRAAIEHQWRAFDQAFEEHPHQICYAVKANS 64
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +L+ L +LG G +VS EL L AG DP + +F+G GK +++ A G+ N
Sbjct: 65 NLAVLDILARLGSGFDIVSVGELERVLAAGGDPGRIVFSGVGKRTDEMERALAVGIACFN 124
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFL 246
V+SE +L + + G++ V LR+NPDVD + HPY+ATG +++KFGI ++ L +
Sbjct: 125 VESEAELLRLNEIAGKLGQRAPVSLRVNPDVDARTHPYIATGLRDNKFGIEIDQALAVYA 184
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
AV P+ + ++G CH+GS +T + F A ++ +D++ +G EV ++++GGGLG
Sbjct: 185 RAVTL-PH-IDILGVDCHIGSQLTSLSPFLAALERVLALVDQLAKRGIEVRHIDLGGGLG 242
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y P P+ +RE + R+L + IEPGR+++ N L+ + +K KN
Sbjct: 243 IIYRDEAP--PSPQQYAAALREKLAGRDLEIWIEPGRAIVGNGGVLLTRIEYLKQAPQKN 300
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDA--EISKFDVVGPVCESADFLGKERELP 424
F ++D +M +L+RP+LYDA+Q I P DA E FDVVGPVCE+ DFLGK+R+L
Sbjct: 301 FAIVDAAMNDLLRPALYDAWQEI---IPVTVDATREALLFDVVGPVCETGDFLGKQRQLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G LVV AGAY +M+S YN + R E V
Sbjct: 358 I-EAGDLLVVRAAGAYGFTMSSNYNSRPRAAEIMV 391
>gi|209693748|ref|YP_002261676.1| diaminopimelate decarboxylase [Aliivibrio salmonicida LFI1238]
gi|208007699|emb|CAQ77810.1| diaminopimelate decarboxylase [Aliivibrio salmonicida LFI1238]
Length = 417
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 224/395 (56%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K DG L+ E+ + + E P Y+YS+ + R+ A+ ++ ++ YA+KA
Sbjct: 4 FNYKDDGQLWAEERPITQLAEQY-GTPLYVYSRATLERHWNAFDSSVGEQPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L LG G +VS EL + AG DPTK +F+G GK +++ A + +
Sbjct: 63 NSNIGVLNALACLGSGFDIVSQGELERVVAAGGDPTKVVFSGVGKTAKEMRRALELNIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNAVAEEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQTLPN-LNIQGIDCHIGSQLTDITPFIDATDRLLALIDDLKAQGVNIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + R +L LI EPGR++ AN LV V +K
Sbjct: 242 GVVYRDE--LPPQPSEYATALLSRLTGREDLELIFEPGRAIAANAGILVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P++ E +D+VGP+CE+ DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVVPREGEAQSYDLVGPICETGDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V +GAY M+S YN + R E V
Sbjct: 357 VLEANDLLAVRSSGAYGFVMSSNYNTRTRAAEIMV 391
>gi|83313590|ref|YP_423854.1| diaminopimelate decarboxylase [Magnetospirillum magneticum AMB-1]
gi|82948431|dbj|BAE53295.1| Diaminopimelate decarboxylase [Magnetospirillum magneticum AMB-1]
Length = 424
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 218/393 (55%), Gaps = 7/393 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANNN 129
+G L+ EDV + + V PFY YS + R+ + +AL+ GL++ I +A KAN N
Sbjct: 8 NGELFAEDVAIARIAREV-GTPFYCYSTATLQRHYTVFAEALKAAGLDATICFAAKANPN 66
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
++ +LG GA +VS ELR AL AG + +F+G GK +L A +G+F +NV
Sbjct: 67 MAVIRTFAQLGAGADVVSEGELRQALAAGVPAARIVFSGVGKTRHELEFAVAKGIFQINV 126
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+SE +LE + + G+ + + +R+NPDVD H + TG K +KFGI + +
Sbjct: 127 ESEPELEMLSEIAAARGQVMPIAIRVNPDVDAGTHAKITTGKKENKFGIEWTRAREVYAR 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
KA P ++ V CH+GS +T++ FR+A + + + + +RA G ++ L++GGGLG+
Sbjct: 187 AKALPG-VEPVAIACHIGSQLTELTPFREAFLRVRDLVAMLRADGIDIRRLDLGGGLGVP 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P+P + ++ + + EPGR L+ N LV+ + VK T+ F+
Sbjct: 246 Y--DDETPPEPAAYAEVIKATLGDLGCRFVFEPGRLLVGNAGILVSRIIRVKEGSTRTFL 303
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L RPSLYDAY I V+ A +++ DVVGPVCE+ D K+R LP
Sbjct: 304 IVDAAMNDLARPSLYDAYHSIFPVAEPKAGAALAEVDVVGPVCETGDTFAKQRRLPPMRT 363
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L AGAY +M+STYN + PE V+
Sbjct: 364 DDLLAFGTAGAYGAAMSSTYNTRPLIPEVLVKG 396
>gi|425902285|ref|ZP_18878876.1| diaminopimelate decarboxylase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397882099|gb|EJK98587.1| diaminopimelate decarboxylase [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 415
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 217/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GQLFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALAGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGAADKIVFSGVGKTRDDMRRALEVGVHCFNVESS 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQQVAAELNVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 188 LPN-LEVVGVDCHIGSQLTTLAPFIDALDRLLDLVDRLGECGIYLRHIDLGGGLGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + + VRE + R+L L+ EPGR ++AN L+ V +K G K+F ++D
Sbjct: 247 EEP--PLAADYVKAVRERLDGRDLELVFEPGRFIVANAGVLLTRVEYLKHTGHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D + +D+VGP+CE+ DFL KER+L + G
Sbjct: 305 AAMNDLIRPALYQAWMDVSAVR--PRDGQARTYDIVGPICETGDFLAKERQLAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|374705203|ref|ZP_09712073.1| diaminopimelate decarboxylase [Pseudomonas sp. S9]
Length = 415
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +AY AL+G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYKAYANALQGMEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK D+ A GV NV+S
Sbjct: 67 VLNILARLGSGFDIVSRGELERVLAAGGSADKIVFSGVGKTRSDMQRALSVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAQMNVTAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAESVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN LK++G CH+GS +T + F DA ++ +D++ +G + +L++GGGLG+ Y
Sbjct: 187 DLPN-LKIIGVDCHIGSQLTTLPPFLDALDRLLVLVDRLAERGITLKHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGRS++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERIAGRDLALLFEPGRSIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ +++V+ P++ + +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAW--MDVVAVKPREGQGRNYDIVGPICETGDFLAKDRQLALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVCSAGAYGFVMSSNYNTRGRAAEVVV 389
>gi|343518137|ref|ZP_08755131.1| diaminopimelate decarboxylase [Haemophilus pittmaniae HK 85]
gi|343393933|gb|EGV06483.1| diaminopimelate decarboxylase [Haemophilus pittmaniae HK 85]
Length = 416
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 231/398 (58%), Gaps = 14/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + DG L+ E VQ + E P Y+YS+ + R+ A+ AL +I YA+KA
Sbjct: 3 FFQFQDGRLFAEKRAVQQLAEEF-GTPLYIYSRATLERHWHAFDSALGTHPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L + +LG G +VS EL L AG +P K +F+G K E+++ A + G+
Sbjct: 62 NSNIAVLNVMAQLGSGFDIVSQGELERVLAAGGEPGKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-- 243
NV+S +L NI + GK + LR+NPDVD HPY++TG K +KFG+ ++ +
Sbjct: 122 FNVESVAELHNINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEARAV 181
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ L A AH +K+VG CH+GS +T++ F DA ++ +++++ G E+ +L+ GG
Sbjct: 182 YKLAAGLAH---VKIVGMDCHIGSQLTELQPFLDATDRLLVLMEQLQQDGIELRHLDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GLG+ Y+ G P P + + +L L +I+EPGR++ AN LV+ V +K+N
Sbjct: 239 GLGVPYH--GETPPHPSDYARALLNKLKAYPQLEIILEPGRAISANAGILVSQVRYLKSN 296
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
++NF ++D M ++IRP+LY AY I E+ P+D+ I +DVVGP+CE++DFLGK R
Sbjct: 297 ESRNFAIVDAGMNDMIRPALYQAYMEIVEVDRNKPRDSAI--YDVVGPICETSDFLGKGR 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+L G + AGAY SM+S YN R E V
Sbjct: 355 QLAIA-AGDFIAQRSAGAYGASMSSNYNSHPRTAEVMV 391
>gi|213970728|ref|ZP_03398853.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
gi|301382616|ref|ZP_07231034.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
Max13]
gi|302061756|ref|ZP_07253297.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato K40]
gi|302133635|ref|ZP_07259625.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422659296|ref|ZP_16721723.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|213924562|gb|EEB58132.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
gi|331017916|gb|EGH97972.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 415
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAFADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|423092985|ref|ZP_17080781.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Q2-87]
gi|397882461|gb|EJK98948.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Q2-87]
Length = 415
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 218/388 (56%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + AL+G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALDGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL L AG K +F+G GK ED+ A Q GV N++S
Sbjct: 68 LNVLARLGAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALQVGVHCFNIEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 188 LPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I TVRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLVADYIKTVRERLEGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRDTVARSYDIVGPICETGDFLAKGRELAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|254492286|ref|ZP_05105460.1| diaminopimelate decarboxylase [Methylophaga thiooxidans DMS010]
gi|224462611|gb|EEF78886.1| diaminopimelate decarboxylase [Methylophaga thiooxydans DMS010]
Length = 416
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 222/394 (56%), Gaps = 8/394 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +AD L+ E+V V + + P Y+YS+ + R+ +A+ A ++ YA+KA
Sbjct: 4 FQYQADT-LHAENVSVTQITQQY-GTPTYVYSRATLARHWKAFDDAFSNHAHLVCYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VS EL + AG + K +F+G GK E++ A + +
Sbjct: 62 NSNLAVLNVLARLGSGFDIVSAGELARVIAAGGEAAKTVFSGVGKNREEIEYALNQNIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L I + + K V +R+NPDVD Q HPY++TG K +KFGI E +
Sbjct: 122 FNVESIPELARINDVAAMLNKVAPVSIRVNPDVDAQTHPYISTGLKENKFGIAIEDARTV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ K N L +VG CH+GS +T V F DA ++ ID++ G + +L+IGGGL
Sbjct: 182 YQSAKQMSN-LNVVGVDCHIGSQLTTVSPFVDALKRVLTLIDELAEDGITIKHLDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y P P + ++ L+ R+L +++EPGR++ N L+ V +K K
Sbjct: 241 GIHY--RDETPPTPAEYAEALQPLLTDRDLEILLEPGRAIAGNAGILLTQVEFIKPTEAK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
F ++D +M +L+RP+LY ++Q I+ V DAE + +D+VGP+CE+ DFLGK+R L
Sbjct: 299 QFAIVDAAMNDLLRPALYQSWQEIQPVM-LNSDAEEATYDIVGPICETGDFLGKDRLLAI 357
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+G L + AGAY +M+S YN + R E V
Sbjct: 358 K-QGDFLAIRSAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|395767630|ref|ZP_10448163.1| diaminopimelate decarboxylase [Bartonella doshiae NCTC 12862]
gi|395413993|gb|EJF80446.1| diaminopimelate decarboxylase [Bartonella doshiae NCTC 12862]
Length = 424
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/406 (33%), Positives = 227/406 (55%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS + G L+ E + + + + V PFY YS + + Y++A + + S+I YA+
Sbjct: 2 HFFSYR-QGTLHAEGLSLSSLAQDV-GTPFYCYSANALVTRFKKYQKAFQEIPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L G GA +VS ELR AL AG + +++G GK + ++ A + +
Sbjct: 60 KANSNQAVLRLLAANGSGADVVSEGELRRALSAGISADRIVYSGVGKTVREIDFALSQDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +LE + V + K + LRINPDVD + H + TG +KFGI +
Sbjct: 120 YCFNVESEPELEQLSVRAVALSKIARISLRINPDVDAKTHKKITTGKSENKFGIPLSLAK 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L++ G H+GS I + F DA +++ +++ ++ G+ + ++++GG
Sbjct: 180 EAYKKAVQLPG-LQVCGVDMHIGSQICDLKPFEDAFLIIADFVRQLWRDGYAITHIDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y + +P + V++ + +++I+EPGRS++ L+ V +K
Sbjct: 239 GLGIAYGNEQHSVPSLSDYAALVKKHIAPLGIHIIVEPGRSIVGEAGILLTSVLYLKRGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF+++D +M +LIRP+LYDA+Q++ LV P D E+ + D+VG VCE+ D+L +R +
Sbjct: 299 GRNFVIVDAAMNDLIRPTLYDAWQNVVLVKQVPADVELIRADIVGSVCETGDYLALDRRV 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G L + AGAY MA+TYN ++ PE V + +I P
Sbjct: 359 PILASGDLLAIMGAGAYGAVMANTYNSRLLIPEVLVEDMRYAVIRP 404
>gi|262404862|ref|ZP_06081416.1| diaminopimelate decarboxylase [Vibrio sp. RC586]
gi|262348946|gb|EEY98085.1| diaminopimelate decarboxylase [Vibrio sp. RC586]
Length = 417
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D++ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQDDGQLWAEQVPLADLVNQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ N L + G CH+GS +T + F DA ++ ID ++ +G + +L++GGGL
Sbjct: 183 YRLAHSLQN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKTEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q +++ P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQ--DIIPLRPRQGEAQTYDLVGPVCETSDFLGKDRDL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 357 VLEEGDLLAVRSSGAYGFTMSSNYNSRPRVAEVMV 391
>gi|59713092|ref|YP_205868.1| diaminopimelate decarboxylase, PLP-binding [Vibrio fischeri ES114]
gi|59481193|gb|AAW86980.1| diaminopimelate decarboxylase, PLP-binding [Vibrio fischeri ES114]
Length = 417
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 227/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K DG L+ E++ + + E P Y+YS+ + R+ +A+ ++ ++ YA+KA
Sbjct: 4 FNYKDDGQLWAEELPITQLAEQF-GTPLYVYSRATLERHWKAFDNSVGNHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DPTK +F+G GK +++ A + +
Sbjct: 63 NSNIGVLNALARLGSGFDIVSQGELERVVAAGGDPTKVVFSGVGKTADEMRRALELKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD + HPY++TG +++KFGI +
Sbjct: 123 FNVESEPELERLNAVAAEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDHAPEV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T ++ F DA ++ ID ++AQG + +L++GGGL
Sbjct: 183 YKFAQSLPN-LDVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVNIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + L ++L LI EPGR++ AN LV V +K
Sbjct: 242 GVVYRDE--LPPQPSEYATALLGRLAEHQDLELIFEPGRAIAANAGILVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P DA+ +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDIVPVVPREGDAQ--NYDLVGPICETGDFLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ L V +GAY M+S YN + R E V
Sbjct: 357 VLEANDLLAVRSSGAYGFVMSSNYNTRCRAAEIMV 391
>gi|91776793|ref|YP_546549.1| diaminopimelate decarboxylase [Methylobacillus flagellatus KT]
gi|91710780|gb|ABE50708.1| diaminopimelate decarboxylase [Methylobacillus flagellatus KT]
Length = 445
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/393 (36%), Positives = 221/393 (56%), Gaps = 14/393 (3%)
Query: 72 DGFLYCEDV---RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
+G L+ E+V R+ D T P Y+YS+ + + +G + ++ +A+K+N
Sbjct: 37 NGILHAENVPLTRIADEFGT----PTYVYSRAALESAYTRFAAGFDGQDHLVCFAVKSNP 92
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
+ +L +LG G +VSG EL L AG DP K +F+G GK ++ A G+F N
Sbjct: 93 SLAVLNLFARLGAGFDIVSGGELARVLAAGGDPAKVVFSGVGKTETEMETALNAGIFCFN 152
Query: 188 VDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
V+S +L+ + VA R+ GK V LR+NP+VD + HPY++TG KN+KFG+ E
Sbjct: 153 VESASELDRLNDVAGRL-GKTAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEDAFNLY 211
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
+ PN + + G CH+GS +T++ F DA ++ +D++ A+G V ++++GGG+G
Sbjct: 212 QHAASLPN-IAVHGVDCHIGSQLTELSPFMDAFDRVLALVDQLEAEGIRVAHIDLGGGIG 270
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y P + + + R + L+ EPGR+L+ N L+ V +K KN
Sbjct: 271 ICY--ADETPPDFAAYAAAMLQKLGDRKVKLVFEPGRALVGNAGALITKVEYLKHTEAKN 328
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L+RP+LYDAY I V PA + +++VGPVCES DFLG +R+L
Sbjct: 329 FAIVDAAMNDLMRPALYDAYHEIAAVVPATDPSSAQVYEIVGPVCESGDFLGHDRKLAL- 387
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+G L V AGAY MSM+S YN + R E V
Sbjct: 388 QQGDLLAVLSAGAYGMSMSSNYNTRPRAAEVMV 420
>gi|398804439|ref|ZP_10563434.1| diaminopimelate decarboxylase [Polaromonas sp. CF318]
gi|398094158|gb|EJL84529.1| diaminopimelate decarboxylase [Polaromonas sp. CF318]
Length = 429
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 230/395 (58%), Gaps = 14/395 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E++ +++ + P ++YSK + + AY++ G ++ I YA+KAN++
Sbjct: 16 EGELFVENLSLRE-LAAAHGTPLFVYSKAAMLSALAAYQRGFAGRDAQICYAMKANSSLG 74
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGVFVNVD 189
+L+ + GCG +VSG EL L AG + K IF+G GK ++ LAA G F NV+
Sbjct: 75 VLQVFARAGCGFDIVSGGELDRVLAAGGEAGKIIFSGVGKTRAEMRQALAAGIGCF-NVE 133
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDA 248
SE +L+ + + G + V +R+NP+VDP+ HPY++TG K++KFG+ +E+ L+ + A
Sbjct: 134 SEAELDVLSEVALAQGLRAPVSIRVNPNVDPKTHPYISTGLKDNKFGVAHEEALRIYRHA 193
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A L++VG CH+GS IT+ + DA +++ + I A G +++++ GGGLGI+
Sbjct: 194 --ASLKGLRVVGIDCHIGSQITEATPYLDAMDRVLDLVASIEAAGIPLEHIDFGGGLGIN 251
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y + P+ L + + +R L+IEPGRSL+ N + V VK K
Sbjct: 252 YNND--TPPEADALWQQLLARLDARGYGGKKLMIEPGRSLVGNAGVCLTQVLYVKPGEHK 309
Query: 366 NFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF +ID +M +L RP++Y A+ I L + A Q A +DVVGPVCES D++G++R L
Sbjct: 310 NFCIIDAAMNDLPRPAMYQAFHAIVPLSAAAAQGASEMTYDVVGPVCESGDWIGRDRTLA 369
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAYCMSMAS YN + R E V
Sbjct: 370 VA-AGDSLAVMSAGAYCMSMASNYNTRGRAAEVLV 403
>gi|422651138|ref|ZP_16713936.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330964219|gb|EGH64479.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 415
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I A+ AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAFADALSGMPHMVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAERIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYIRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLAGRDLGLLFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+E +D+VGP+CE+ DFL K REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDSEPRAYDIVGPICETGDFLAKGRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|383774635|ref|YP_005453704.1| diaminopimelate decarboxylase [Bradyrhizobium sp. S23321]
gi|381362762|dbj|BAL79592.1| diaminopimelate decarboxylase [Bradyrhizobium sp. S23321]
Length = 421
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 215/399 (53%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ V PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVSLSELAAAV-GTPFYCYSTATLERHYRVFTDAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L KLG GA +VSG EL+ AL AG +K +F+G GK ++L A A + + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPASKILFSGVGKTEDELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + LR+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATETGKTARISLRVNPDVDAGTHAKISTGKSENKFGIPIAHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G ++ +++ GGGLGI YY
Sbjct: 187 RLPG-IEVTGTDVHIGSQITDLSSMETAFRILAEFVQTLRADGHDISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDVYAAMVKRISHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ A + A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQAAKGAATILADVVGPVCETGDYLALDRTLPTPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LIAIMTAGAYGAVQAGTYNTRPLVPEVLVKGDQYAVVRP 404
>gi|154252052|ref|YP_001412876.1| diaminopimelate decarboxylase [Parvibaculum lavamentivorans DS-1]
gi|154156002|gb|ABS63219.1| diaminopimelate decarboxylase [Parvibaculum lavamentivorans DS-1]
Length = 422
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 216/401 (53%), Gaps = 10/401 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV + D+ + PFY YS + R+ E + A +G + + Y++
Sbjct: 2 HHFEYR-DGVLHAEDVAISDIAAAI-GTPFYCYSSATLERHYEVFAGAFKGQPARVCYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ L +LG GA +VS ELR AL AG K +F+G GK ++ A + G+
Sbjct: 60 KANSNLAVIATLARLGAGADVVSEGELRRALAAGIPAEKIVFSGVGKTEAEMAFALETGI 119
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + G V +R+NPDVD + H +ATG +KFGI ++
Sbjct: 120 DQFNVESEPELELLAELAAARGLTAQVAIRVNPDVDAKTHEKIATGKAENKFGISWKRAP 179
Query: 244 WFLDAVKAHPNELKLV---GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
AV A ELK V G H+GS +T ++ F A + ++ +RA+G E+ +++
Sbjct: 180 ----AVYARARELKGVKACGIDVHIGSQLTALEPFAAAFERVAGMVEALRAEGHEITHID 235
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
+GGGLGI Y V P P V+ + L EPGR + N LV+ V K
Sbjct: 236 LGGGLGIPYRGDNDVPPHPDEYAAMVKRTIGHLGCELTFEPGRLIAGNAGILVSRVIYEK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
+ F+++D +M +LIRP+LYDA+ I V+ + A +DVVGPVCE+ DF K
Sbjct: 296 QGDDRAFLIVDAAMNDLIRPTLYDAFHDIRPVTEPAEGAARVSYDVVGPVCETGDFFAKA 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
RELP G + + AGAY ASTYN + PE V+
Sbjct: 356 RELPRLKSGDLVAIMSAGAYSAVQASTYNTRPLVPEVMVKG 396
>gi|410996682|gb|AFV98147.1| hypothetical protein B649_09175 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 400
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 212/370 (57%), Gaps = 7/370 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + E+ K+A G SI+ YA+KAN+N +++H + G GA VS E+R
Sbjct: 14 PLYVYDFDAMKTQFESLKEAFRGRKSILAYAVKANSNLSVVKHFAQQGSGADCVSIGEVR 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL AG + IF+G GK +++ A + + ++NV+SE +L + + +R G K +
Sbjct: 74 RALMAGVPKYRVIFSGVGKRDDEIREAIESDILYINVESEAELGRVEMIARELGAKARIS 133
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP++DP+ HPY++TG ++KFG+ + K PN L VG H H+GS +T
Sbjct: 134 VRVNPNIDPKTHPYISTGLHDNKFGVEIVAAKRMYIQAKNSPN-LDPVGIHFHIGSQLTD 192
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ +AAV++ + + ++A E+ + +IGGGLG+ Y + + +P + + +
Sbjct: 193 LEPIYEAAVIVADLLRSLQAIDIELKFFDIGGGLGVRYDNETTI--EPYDYAQAILSALK 250
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
++ +I+EPGR L AN + V K NG K F+++DG+M +LIRPSLY AY +E
Sbjct: 251 GIDVTIIMEPGRFLTANAGYFLTKVLYEKNNGEKRFVMVDGAMNDLIRPSLYKAYHRVEA 310
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+ + + + DVVGPVCES DFL K LP + LV+H AGAY M S YN +
Sbjct: 311 LD---KTGDATPADVVGPVCESGDFLAKNYPLPPMEHNDLLVIHSAGAYGFGMGSNYNTR 367
Query: 452 MRPPEYWVRS 461
R E + +
Sbjct: 368 GRSAEIAIEA 377
>gi|395764815|ref|ZP_10445435.1| diaminopimelate decarboxylase [Bartonella sp. DB5-6]
gi|395413632|gb|EJF80094.1| diaminopimelate decarboxylase [Bartonella sp. DB5-6]
Length = 424
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/404 (34%), Positives = 225/404 (55%), Gaps = 3/404 (0%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + + V PFY YS + + Y++A + + S+I YA+KA
Sbjct: 3 FFTYHQGILHAEGLSLSALAQDV-GTPFYCYSASALVERFQEYQRAFQEMPSLIAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L G GA +VS ELR AL G + I++G GK ++++ A + ++
Sbjct: 62 NSNQAVLRLLGLNGSGADVVSEGELRRALAVGIPAQRIIYSGVGKTVQEIDFALSQDIYC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + K + LRINPDVD + H + TG +KFGI +
Sbjct: 122 FNVESESELEQLSARAAALSKTARISLRINPDVDAKTHEKITTGKSENKFGIPLLLAREA 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P L++ G H+GS I + F +A +++ +++ ++ + G+ + +++IGGGL
Sbjct: 182 YKKADSLPG-LQVCGVDMHIGSQICDLKPFEEAFLIVADFVRQLWSDGYAITHIDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y + +P + V++L+ +N+I+EPGRS++ LV V +K +
Sbjct: 241 GIAYGNEQHNIPSLFDYAALVKKLISPLGINIIVEPGRSIVGEAGVLVTSVLYLKRGKGR 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF+++D +M + IRP+LYDA+Q++ LV A DA + + D+VG VCE+ D+L +R +P
Sbjct: 301 NFVIVDAAMNDFIRPTLYDAWQNVVLVKQASNDASLIRADIVGSVCETGDYLALDRCVPI 360
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G LV AGAY MASTYN ++ PE V+ II P
Sbjct: 361 LATGDLLVFTGAGAYGAVMASTYNSRLLVPEVLVQDTRYAIIRP 404
>gi|375110140|ref|ZP_09756374.1| diaminopimelate decarboxylase [Alishewanella jeotgali KCTC 22429]
gi|397171647|ref|ZP_10495047.1| diaminopimelate decarboxylase [Alishewanella aestuarii B11]
gi|374569767|gb|EHR40916.1| diaminopimelate decarboxylase [Alishewanella jeotgali KCTC 22429]
gi|396086760|gb|EJI84370.1| diaminopimelate decarboxylase [Alishewanella aestuarii B11]
Length = 418
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 228/393 (58%), Gaps = 19/393 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL-NSIIGYAIKANNNYKIL 133
L+ E V + D+ P Y+YS+ I R+ A+ A +S++ YA+KAN+N +L
Sbjct: 11 LFAEQVALADIASQY-GTPTYVYSRATIERHYRAFADAAAAHPHSLVCYAVKANSNLAVL 69
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEF 192
L +LG G LVSG ELR + AG DP K +F+G GK E++ A Q G+ NV+S
Sbjct: 70 NLLARLGSGFDLVSGGELRRVIAAGGDPAKVVFSGVGKTAEEMHFALQLGIKCFNVESVS 129
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA- 251
+L + ++ GKK V LR+NPD+D + HPY++TG K +KFGI + D +A
Sbjct: 130 ELHRLQDVAKALGKKAPVSLRVNPDIDAKTHPYISTGLKANKFGI---DILLAADIYRAA 186
Query: 252 -HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ ++LVG CH+GS +T+ F DA ++ I+ ++A G E+ +++IGGGLG+ Y
Sbjct: 187 RELSHIELVGVDCHIGSQLTETQPFLDALEKLLALIEALKADGIELKHIDIGGGLGVTYD 246
Query: 311 HTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
V P P + I V E L L LI+EPGR+++AN L+ V +K K+F +
Sbjct: 247 QE--VPPSPADYISKVVERLKAYPQLELIMEPGRAIMANAGILLTKVEFLKPGQEKHFAI 304
Query: 370 IDGSMAELIRPSLYDAYQHI---ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
+D +M +LIRP+LY A+ +I L + P+ +DVVGPVCE+ DFLGK+REL
Sbjct: 305 VDAAMNDLIRPALYSAWMNIVPVVLNNSLPR----QNYDVVGPVCETGDFLGKDRELAIA 360
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 361 E-GDLLAVRSAGAYGFTMSSNYNSRPRAAEVMV 392
>gi|158426283|ref|YP_001527575.1| diaminopimelate decarboxylase [Azorhizobium caulinodans ORS 571]
gi|158333172|dbj|BAF90657.1| diaminopimelate decarboxylase [Azorhizobium caulinodans ORS 571]
Length = 420
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 214/399 (53%), Gaps = 4/399 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L EDV + + E V PFY YS + R+ +K A ++ YA+KAN+N
Sbjct: 8 DGRLKAEDVDIATLAEEV-GTPFYCYSTATLERHYRVFKAAFAEREMLLCYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
++ L ++G GA +VSG EL+ AL AG + +F+G GK E++ A + G+ NV+S
Sbjct: 67 VIATLARMGAGADIVSGGELKRALAAGIPGERIVFSGVGKTREEMAQALEAGILCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + G+ N+ +RINPDVD + H ++TG +KFGI + +
Sbjct: 127 EPELSALSQVATAMGRTANISIRINPDVDAKTHAKISTGKSENKFGIPISRARTVYAEAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P LK+ G H+GS IT + F +A +LM + AQG + +L++GGGLG+ Y
Sbjct: 187 TLPG-LKVAGIDMHIGSQITDLGPFENATLLMAELARDLLAQGHALHHLDLGGGLGVPYV 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P P + + +L L+ E GR ++AN LV V VK K F+++
Sbjct: 246 AGDPVPPSPDAYAAVITRALKGLDLPLVFEMGRMIVANAGILVARVIYVKHGEGKTFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V P A +K DVVGPVCE+ D+L +RELP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDIVPVHQRPS-APTAKVDVVGPVCETGDYLALDRELPELMPGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ V AGAY ASTYN + E V + ++ P
Sbjct: 365 LIAVMTAGAYGAVQASTYNTRPLIAEVLVSGHQAAVVRP 403
>gi|451942685|ref|YP_007463322.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451902072|gb|AGF76534.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 424
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 229/408 (56%), Gaps = 8/408 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS + D L+ E V + + V PFY YS + +++ Y+ A + + S+I YA+
Sbjct: 2 HFFSYRQD-VLHVEGVSLLQLARDV-GTPFYCYSANALLAHLKDYQNAFQDMPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEG 183
KAN+N +L L G GA +VS ELR L G + +++G GK +E++ A A++
Sbjct: 60 KANSNQAVLRLLANHGAGADVVSEGELRRVLAVGIPAHRVVYSGVGKKVEEMDFALAKDI 119
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + K V LRINP+VD + H + TG +KFGI L
Sbjct: 120 CCFNVESEPELEQLSARAVALSKTARVSLRINPNVDAKTHKKITTGKSENKFGIP-LSLA 178
Query: 244 WFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
W DA K A L + G H+GS I + F DA V+ +++ ++ G+ + +++I
Sbjct: 179 W--DAYKKAAQLPGLDVCGVDLHIGSQICDLKPFEDAFVIAADFVRQLWNGGYAITHVDI 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y H +P P + V++ + +++I+EPGRS+I + LV V +K
Sbjct: 237 GGGLGIPYGHEQHPIPSPFDYAALVKKHIAPLGIHIILEPGRSIIGDAGVLVTSVLYLKK 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+NF+++D +M + +RP+LYDA+Q++ LV A +A + DVVGPVCE+ D+L R
Sbjct: 297 GEGRNFVIVDAAMNDFMRPTLYDAWQNVILVEKAAMNAPLINVDVVGPVCETGDYLALNR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G +V+ AGAY M++TYN ++ PE V+ + ++ P
Sbjct: 357 SMPLVAAGDFIVITGAGAYGAVMSNTYNSRLLVPEVLVQHMRYAVVRP 404
>gi|113461849|ref|YP_719918.1| diaminopimelate decarboxylase [Haemophilus somnus 129PT]
gi|112823892|gb|ABI25981.1| diaminopimelate decarboxylase [Haemophilus somnus 129PT]
Length = 417
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 225/390 (57%), Gaps = 8/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L E+V V+ + E P Y+YS+ + R+ A+ AL +I +A+K+N N
Sbjct: 8 DGHLMAENVSVKKIAEQF-GTPAYIYSRATLERHWYAFDNALGDHPHLICFAVKSNPNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL + KLG G +VS EL L AG DP K +F+G K +++ A + G+ NV+S
Sbjct: 67 ILNIMAKLGSGFDIVSQGELERVLFAGGDPKKVVFSGVAKSEQEIARALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I +R GK ++ LR+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 127 AAELIRINQVARKMGKIASISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYRQAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
N +K+VG CH+GS +T++ F DA ++ +++++ G ++++++GGGLG+ Y
Sbjct: 187 QLEN-IKIVGIDCHIGSQLTELQPFLDATDRLIVLMEQLKKDGITLEHVDLGGGLGVTYS 245
Query: 311 HTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
A P P + E L +NL +I+EPGR++ AN L+ V +K+N +++F +
Sbjct: 246 DEKA--PHPSEYATALLEKLKNYQNLEIILEPGRAITANAGILLTRVEYIKSNESRHFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M ++IRP+LY AY +I V E +DVVGP+CE++DFLGK+R L +G
Sbjct: 304 VDTGMNDMIRPALYQAYMNIIEVDRTL-SRETKVYDVVGPICETSDFLGKQRSLAIA-QG 361
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+V AGAY SMASTYN + R E V
Sbjct: 362 DFIVQRSAGAYGASMASTYNSRPRAIEIMV 391
>gi|451823413|ref|YP_007459687.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451776213|gb|AGF47254.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 418
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 220/372 (59%), Gaps = 12/372 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ I + Y +A+ N +I Y +KAN+N IL+ +LG G +VSG EL
Sbjct: 30 PLYVYSRAAIKDSWNRYAKAILNKNCLICYGMKANSNLAILKEFSELGSGFDIVSGGELE 89
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL G +P K +F+G GK +++ A + G+ N++SE +L I + +
Sbjct: 90 RALAIGANPQKIVFSGVGKQEWEIIYALKSGIKCFNIESEAELHKISDIASNLHITAPIS 149
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
+R+NPDVD + HPY++TG K +KFGI L + A K + +VG CH+GS +T
Sbjct: 150 IRVNPDVDAKTHPYISTGLKENKFGISIKNALNCYKTASKLP--FIDIVGIDCHIGSQLT 207
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
++ F DA ++ I ++ + +L+IGGGLGI Y V+P P+ +ID+V +
Sbjct: 208 EIPPFIDALDKLIPLIKELIKNNISIKHLDIGGGLGITY--KDEVIPDPKQIIDSVILKL 265
Query: 331 LSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQ 387
NL+ LI+EPGRSLI N L+ V +K + +NF+++D +M +L+RP+LY +Y
Sbjct: 266 KESNLDHLELILEPGRSLIGNCGILLTKVIYIKHSEDRNFVIVDAAMNDLLRPALYQSYH 325
Query: 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAST 447
++ V+P +A+ ++DVVGP+CESAD+L K R L + L++ AGAYC +M+S
Sbjct: 326 EVKPVAPRTGNAK--EYDVVGPICESADWLAKNRLLNVQENDL-LIIESAGAYCTTMSSN 382
Query: 448 YNLKMRPPEYWV 459
YN ++RP E V
Sbjct: 383 YNSRVRPAEVIV 394
>gi|398872707|ref|ZP_10627990.1| diaminopimelate decarboxylase [Pseudomonas sp. GM74]
gi|398201865|gb|EJM88728.1| diaminopimelate decarboxylase [Pseudomonas sp. GM74]
Length = 415
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG P K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGTPDKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRQSAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|399518949|ref|ZP_10759757.1| lysA [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399112773|emb|CCH36315.1| lysA [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 415
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 224/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSALAQRF-GTPTYVYSRAHIEGQYRAYADALAGMPHLVCFAVKANSNIG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG +P++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G K V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 127 SVELERLQKVAAELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA ++ +DK+ A+G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LEVIGVDCHIGSQLTTLEPFLDALDRLLLLVDKLAARGITIKHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VR+ + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEQP--PLAGDYITAVRKRLQGRDLGLVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P++ E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSPVQ--PREGESRNYDLVGPICETGDFLAKDRQLVLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|393763559|ref|ZP_10352177.1| diaminopimelate decarboxylase [Alishewanella agri BL06]
gi|392605481|gb|EIW88374.1| diaminopimelate decarboxylase [Alishewanella agri BL06]
Length = 418
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 228/393 (58%), Gaps = 19/393 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL-NSIIGYAIKANNNYKIL 133
L+ E V + D+ P Y+YS+ I R+ A+ A +S++ YA+KAN+N +L
Sbjct: 11 LFAEQVALADIASQY-GTPTYVYSRATIERHYRAFADAAAAHPHSLVCYAVKANSNLAVL 69
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEF 192
L +LG G LVSG ELR + AG DP K +F+G GK E++ A Q G+ NV+S
Sbjct: 70 NLLARLGSGFDLVSGGELRRVIAAGGDPAKVVFSGVGKTAEEMHFALQLGIKCFNVESVS 129
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA- 251
+L + ++ GKK V LR+NPD+D + HPY++TG K +KFGI + D +A
Sbjct: 130 ELHRLQDVAKALGKKAPVSLRVNPDIDAKTHPYISTGLKANKFGI---DILLATDIYRAA 186
Query: 252 -HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ ++LVG CH+GS +T+ F DA ++ I+ ++A G E+ +++IGGGLG+ Y
Sbjct: 187 RELSHIELVGVDCHIGSQLTETQPFLDALEKLLALIEALKADGIELKHIDIGGGLGVTYD 246
Query: 311 HTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
V P P + I V E L L LI+EPGR+++AN L+ V +K K+F +
Sbjct: 247 QE--VPPSPADYISKVVERLKAYPQLELIMEPGRAIMANAGILLTKVEFLKPGQEKHFAI 304
Query: 370 IDGSMAELIRPSLYDAYQHI---ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
+D +M +LIRP+LY A+ +I L + P+ +DVVGPVCE+ DFLGK+REL
Sbjct: 305 VDAAMNDLIRPALYSAWMNIVPVVLNNSLPR----QNYDVVGPVCETGDFLGKDRELAIA 360
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + R E V
Sbjct: 361 E-GDLLAVRSAGAYGFTMSSNYNSRPRAAEVMV 392
>gi|222109911|ref|YP_002552175.1| diaminopimelate decarboxylase [Acidovorax ebreus TPSY]
gi|221729355|gb|ACM32175.1| diaminopimelate decarboxylase [Acidovorax ebreus TPSY]
Length = 431
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/406 (36%), Positives = 221/406 (54%), Gaps = 9/406 (2%)
Query: 58 THTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN 117
TH H D L E +R+ D+ P Y+YS+ + + AY++ G
Sbjct: 2 THPVLPGHPHLHYHDQALQLEGLRLADLAREFGT-PLYVYSQAAMLDALGAYQRGFAGRK 60
Query: 118 SIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV 177
I YA+KAN++ +L+ + GCG +VS EL+ + AG DP K IF+G GK ++
Sbjct: 61 VQICYAMKANSSLAVLQLFARHGCGFDIVSAGELQRVIAAGGDPAKVIFSGVGKTRAEMR 120
Query: 178 LAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
A + G+ NV+SE +LE + ++ G + + +R+NP+VD + HPY++TG K +KFG
Sbjct: 121 QALEVGIGCFNVESEAELEVLSEVAQSMGLRAPISIRVNPNVDAKTHPYISTGLKGNKFG 180
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
I +E+ A P L++VG CH+GS IT+ + DA M++ + I A G V
Sbjct: 181 IAHERTVATYQRAAALPG-LRVVGIDCHIGSQITEESPYLDAMDRMLDLVQAIEAAGIAV 239
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLV 353
+++ GGGLGIDY G P+ L + + +R + L+IEPGRSL+ N +
Sbjct: 240 HHIDFGGGLGIDY--NGDTPPRADALWAKLLAKLDARGYGDRQLMIEPGRSLVGNAGVCL 297
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
V +K KNF ++D +M +L RP++Y AY I + A +DVVGP+CES
Sbjct: 298 TEVLYLKPGEQKNFCIVDAAMNDLPRPAMYQAYHAIVPLQATAPTAVSHVYDVVGPICES 357
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D++G++R L G L V AGAYC SM STYN + RP E V
Sbjct: 358 GDWIGRDRNLAVA-AGDMLAVLSAGAYCSSMGSTYNTRPRPAEVLV 402
>gi|456352692|dbj|BAM87137.1| diaminopimelate decarboxylase [Agromonas oligotrophica S58]
Length = 421
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 217/400 (54%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + TV PFY YS + R+ + A G + +I YA+KAN+N
Sbjct: 8 DGVLHAEAVNLTSLAATV-GTPFYCYSTATLERHYRVFADAFAGQDVLICYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG K +F+G GK +L A + +N++S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPARKIVFSGVGKTEAELRAALAADIHCLNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + ++ G + +R+NPDVD H ++TG +KFGI E + A
Sbjct: 127 EPELDLLARLAQETGHTARISVRVNPDVDAGTHAKISTGKSENKFGIPLEHARKVY-ARA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A + + G H+GS IT + A ++ ++ +RA G + +++ GGGLGI Y+
Sbjct: 186 AKMKGIAVTGVDVHIGSQITDLGPMETAFRILTEFVQTLRADGHTISHVDFGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
GAV P+P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 LDGAVPPEPAAYAAMVKRISHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGEAKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+A+ I V PAP +A DVVGPVCES D+L +R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVKQPAP-NAPAFVADVVGPVCESGDYLALDRALPEPAPG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY A TYN + PE V+ + +I P
Sbjct: 365 DLLAIMTAGAYGAVQACTYNTRALVPEVLVKGDQAAVIRP 404
>gi|327401963|ref|YP_004342802.1| diaminopimelate decarboxylase [Archaeoglobus veneficus SNP6]
gi|327317471|gb|AEA48087.1| diaminopimelate decarboxylase [Archaeoglobus veneficus SNP6]
Length = 427
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 227/397 (57%), Gaps = 14/397 (3%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
+ DG L+ E V V D+++ + P Y+ S+ ++ N++AY QA ++ + YA+KANN
Sbjct: 9 RSVDGVLHVEGVSVLDLVKEL-GSPLYVTSRGRLEENMKAYMQAFP--DARLLYAVKANN 65
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNV 188
N I++ + + G GA + S EL LAL AGF P K +FNGN K E++ + + G + +V
Sbjct: 66 NLSIMKIISRAGFGADVFSDGELYLALLAGFKPEKILFNGNSKSEEEIRMGVRAGTYFSV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
DS +L + + G++V + RINPD+ P+ HP ++TG + SKFGI E++
Sbjct: 126 DSIDELHVLSEVAVEEGEEVKIAFRINPDISPETHPKISTGLRTSKFGIPWEEVANAYRL 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
P + G HCH+GS I + F +A + + + + G +V++L++GGGLGID
Sbjct: 186 AVEMPG-IVPAGIHCHIGSQILDISPFVEALNRLFDVAEVLEDMGIDVEFLDLGGGLGID 244
Query: 309 YYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
Y G+ P P + + R+ L+ N L +EPGRS+I NT L+ V VK
Sbjct: 245 YEGKGS--PTPADFAAKILPVFEERKERLNSNPELWLEPGRSIIGNTTILLTKVNAVK-K 301
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF+ +D L+RP++Y+AY + + + ++ E + +VGP+CES D L ++R+
Sbjct: 302 AYKNFVAVDAGFNLLMRPAMYNAYHRVAIANKMDREEE-EVYTIVGPICESGDVLAEDRK 360
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +RG + + DAGAY SM+S YN + R E V
Sbjct: 361 LPRVERGDIIAIFDAGAYGFSMSSQYNGRRRCAEVLV 397
>gi|444376029|ref|ZP_21175278.1| Diaminopimelate decarboxylase [Enterovibrio sp. AK16]
gi|443679800|gb|ELT86451.1| Diaminopimelate decarboxylase [Enterovibrio sp. AK16]
Length = 417
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 228/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ ED+ + + E P Y+YS+ + R+ A+ +A+ +I YA+KA
Sbjct: 4 FNYQDDGQLWAEDLPLAQLAEQY-GTPLYVYSRATLERHWHAFDKAVGDHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP K +F+G GK ++ A + G+
Sbjct: 63 NSNLGVLNVLARLGSGFDIVSQGELERVLAAGGDPKKVVFSGVGKTEPEMARALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + GK + LRINPDVD + HPY++TG K +KFGI ++ +
Sbjct: 123 FNVESEAELDRLNKVAGELGKVAPISLRINPDVDAKTHPYISTGLKENKFGIAFDRAREV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P+ L + G CH+GS +T++ F ++ ++ ID + G +D+L++GGGL
Sbjct: 183 YQYANSLPH-LSVHGIDCHIGSQLTELAPFIESTDRLLALIDALGQDGISIDHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + + L +++ L+ EPGR++ AN L+ V +K N
Sbjct: 242 GVTY--SDEKPPEPSDYAKALLDRLSNHQDIELVFEPGRAIAANAGVLLTKVEFLKHNEE 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGPVCE+ D+LGK+R L
Sbjct: 300 KNFAIIDAAMNDLLRPALYQAWQDI--VPVQPRQGEAKTYDLVGPVCETGDYLGKDRAL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY M+S YN + R E V
Sbjct: 357 VLEAGDLLAVRSSGAYGFVMSSNYNTRCRAAEVMV 391
>gi|320106738|ref|YP_004182328.1| diaminopimelate decarboxylase [Terriglobus saanensis SP1PR4]
gi|319925259|gb|ADV82334.1| diaminopimelate decarboxylase [Terriglobus saanensis SP1PR4]
Length = 437
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 225/409 (55%), Gaps = 37/409 (9%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
A G L C+ V +Q + + P Y+YS Q+ + + + + YA+KAN+
Sbjct: 23 AGGELVCDGVSLQKLAKKFGT-PLYVYSAAQMVERAGMFAREFADVQHTVCYAVKANSAL 81
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPT-----KCIFNGNGKLLEDLVLAAQEGVF 185
+L+ L GCG +VSG EL +RA D + +F+G GK ++ LA +EG+
Sbjct: 82 GVLKLLAAQGCGFDIVSGGELERVIRAAGDKRAEVCGRVVFSGVGKQPAEIDLALREGIL 141
Query: 186 V-NVDSEFDLENIVVASRIAGKKVN--VLLRINPDVDPQVHPYVATGNKNSKFGI----- 237
+ NV+SE +LE +VA R A K+ + LR+NPDV + HPY++TG + KFGI
Sbjct: 142 LFNVESEGELE--LVAERAAKLKIKARIALRVNPDVFAETHPYISTGLREHKFGIDIRLA 199
Query: 238 -----RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
R +L+W L+ G H+GS I V+ F A +V I ++RA
Sbjct: 200 RKVYKRAAQLKW-----------LEPAGVSVHIGSQIRSVEPFAAALSRVVALIKQLRAD 248
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTVRELVLSRNLNLIIEPGRSLIANTC 350
G ++ Y + GGGLGIDY G P + ++ + + +L+L++EPGR ++A
Sbjct: 249 GHDIRYADAGGGLGIDY-GAGNFEPAKQVAKYAKALKGALGTMDLHLLLEPGRFIVAQAG 307
Query: 351 CLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPV 410
LV+ V VK NGTK F++ D +M +LIRP+LY A H E+V ++ K DVVGPV
Sbjct: 308 ALVSQVLFVKKNGTKTFVIADAAMNDLIRPALYQA--HHEIVPLKQTSRKLRKVDVVGPV 365
Query: 411 CESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
CES DF ++RE+ RG G+ + DAGAY +S++S YN ++RP E +
Sbjct: 366 CESGDFFARDREMAPLKRGDGIALLDAGAYGLSLSSNYNTRVRPAEVLI 414
>gi|456062420|ref|YP_007501390.1| Diaminopimelate decarboxylase [beta proteobacterium CB]
gi|455439717|gb|AGG32655.1| Diaminopimelate decarboxylase [beta proteobacterium CB]
Length = 432
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 235/408 (57%), Gaps = 23/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN----SIIGYAIKAN 127
+G Y E++ + D+ + P Y+YSK +T +AY +A + + + YA+KAN
Sbjct: 18 NGTWYAEEIPLADLAKEF-GTPLYVYSKKALTEAYQAYDKACVDSSGKRRARVHYAMKAN 76
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FV 186
+N +++ +KLG G LVSG EL AL G DP +F G GK ++ A + GV +
Sbjct: 77 SNLAVIDCFKKLGSGFDLVSGGELARALAVGADPKSLVFAGVGKSAPEIAQALEAGVKCI 136
Query: 187 NVDSEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
NV+S +L I +R+A K + + LR+NPDVD Q HPY++TG K +KFGI +E L
Sbjct: 137 NVESIAELHQI---NRVATKLNCRAPISLRVNPDVDAQTHPYISTGLKGNKFGIAYHEVL 193
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + +A A +++ +VG CH+GS IT + DA ++ + +++ +G E+ +L++G
Sbjct: 194 KTYREA--ALLSQIDVVGIDCHIGSQITTTAPYLDALDKVLELVAQLKKEGIEIHHLDLG 251
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGV 359
GGLGI Y P + +T+ V R +L++++EPGRSL+ N L+ V +
Sbjct: 252 GGLGISYGDDNP--PDITDFTNTLLNRVAERGFAHLDVVLEPGRSLVGNAGVLLTQVEYL 309
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K KNF ++D +M EL+RP+LY+AY I V + S +D+VGPVCES D+LG+
Sbjct: 310 KPGAEKNFCIVDAAMTELMRPALYEAYHGI--VPVQTKQVASSTYDIVGPVCESGDWLGR 367
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+REL + G L + AGAY MAS YN + +P E V + +I
Sbjct: 368 DRELAV-EEGDLLAILSAGAYGFVMASNYNTRPKPAEIMVDGKNAFVI 414
>gi|359782404|ref|ZP_09285625.1| diaminopimelate decarboxylase [Pseudomonas psychrotolerans L19]
gi|359369671|gb|EHK70241.1| diaminopimelate decarboxylase [Pseudomonas psychrotolerans L19]
Length = 415
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 222/395 (56%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
F+ +A G L+ E V + V + P Y+YS+ I AY AL GL ++ +A+K
Sbjct: 3 VFAVRA-GELHAEGVALSAVAQEFGT-PAYVYSRAHIEGQYRAYTDALAGLPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP + +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPHRVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 121 CFNVESTDELERLQQVAAELGVVAPISLRVNPDVDAGTHPYISTGLKENKFGIDIADAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
PN L+++G CH+GS +T + F DA ++ ID++ +G + +L++GGG
Sbjct: 181 VYARAAELPN-LEILGVDCHIGSQLTTLPPFLDALDRLLALIDRLAERGIVLRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + RNL L+ EPGR ++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIQAIRERIAGRNLTLVFEPGRFIVANAGVLLTRVEYLKHTAH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ E V+ DA ++D+VGP+CE+ DFL K+REL
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMAAEPVTARQGDAR--RYDLVGPICETGDFLAKDRELV 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L + AGAY +M+S YN + R E V
Sbjct: 356 LAE-GDLLAIRSAGAYGFTMSSNYNTRGRAAEVMV 389
>gi|39937799|ref|NP_950075.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris CGA009]
gi|39651659|emb|CAE30181.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris CGA009]
Length = 421
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 219/403 (54%), Gaps = 11/403 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + V PFY YS + R+ + +A GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEGVSLASIAQDV-GTPFYCYSSATLERHYRVFTEAFAGLDALVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L KLG GA +VSG EL+ AL AG P+K +F+G GK +L A + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELQRALAAGIPPSKIVFSGVGKTEAELRAALDHDIKCLNVES 126
Query: 191 EFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E +LE + SRIA G+ + LR+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELEQL---SRIAVETGRTARISLRVNPDVDSGTHAKISTGKSENKFGIPIRHAREVYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
P +++ G H+GS I + A + +I +R G V++++ GGGLGI
Sbjct: 184 RAAKLPG-IQVTGVDVHIGSQIIDLAPMEAAFRKVAEFIHVLRGDGHTVNHVDFGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
YY P+P + V+ + + L+ EPGR ++ N LV V VK K F
Sbjct: 243 PYYEDRDAPPEPFAYAEMVKRVTHNLGCTLLFEPGRMIVGNAGILVAKVIYVKHGDGKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
++ID +M +LIRP+LY+AY I + +PAP A + DVVGPVCE+ D+L +R+LP
Sbjct: 303 VIIDAAMNDLIRPTLYEAYHEILPVAAPAPGVATMVA-DVVGPVCETGDYLALDRKLPEL 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + + AGAY A TYN + PE V+ ++ P
Sbjct: 362 KAGDLIAIMTAGAYGAVQACTYNTRALVPEVLVKDDQVAVVRP 404
>gi|296135146|ref|YP_003642388.1| diaminopimelate decarboxylase [Thiomonas intermedia K12]
gi|295795268|gb|ADG30058.1| diaminopimelate decarboxylase [Thiomonas intermedia K12]
Length = 430
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 224/385 (58%), Gaps = 16/385 (4%)
Query: 93 PFYLYSKPQITRNVEAYKQALEG--LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P Y+YS+ I + Y QA + ++ + YA+KAN+N +L+ L +LG G +VS E
Sbjct: 39 PTYVYSRASIEEAAQRYSQAAQASPVHVALRYAVKANSNLAVLQLLARLGWGFDIVSAGE 98
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
L+ L AG + K +F+G GK +D+ A GV NV+S +L + ++ AGK
Sbjct: 99 LKRVLAAGGEAGKVVFSGVGKSADDMRFALDVGVECFNVESPSELAALNRVAQAAGKVAR 158
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
V LR+NPDVD HPY++TG K +KFGI +++ Q L A +++LVG CH+GS
Sbjct: 159 VALRVNPDVDAGTHPYISTGLKTNKFGISQDQAAQLALQ--TAQFEQVQLVGIACHIGSQ 216
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
IT V+ + DA +++ ++++ +G +++++++GGGLGI Y T P P+ + +
Sbjct: 217 ITTVEPYLDALDKVLDLVEQMERKGAKIEHIDLGGGLGIRY--TDETPPTPQEWLSPLLA 274
Query: 329 LVLSRNL---NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDA 385
+ +R ++IEPGRS++ N L+ +K+ K+F V+D M +LIRP+LY A
Sbjct: 275 RISARGFGHRTIVIEPGRSIVGNAGVLLTRTLFLKSTPVKHFAVVDAGMNDLIRPALYSA 334
Query: 386 YQHIELVSPAPQ-DAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSM 444
Q V PA Q + K+D+VGPVCESAD+L ++R L + G L + +GAY M M
Sbjct: 335 EQA---VVPAEQREGSALKYDIVGPVCESADWLARDRALVLAE-GDLLAILSSGAYGMVM 390
Query: 445 ASTYNLKMRPPEYWVRSLISIIILP 469
AS YN + RP E V + +I P
Sbjct: 391 ASNYNSRGRPAEVMVDGATATLIRP 415
>gi|407892737|ref|ZP_11151767.1| diaminopimelate decarboxylase [Diplorickettsia massiliensis 20B]
Length = 414
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 220/397 (55%), Gaps = 21/397 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ V +M+ P Y YS + + A+ AL+ I YA+KAN+N +L
Sbjct: 10 LYIEDIPVLSLMQQY-GSPCYFYSNAVLQQRWVAFTTALQDYPHQICYAVKANSNLALLR 68
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGVFVNVDSEF 192
L K G G +VSG EL + A DPT+C+F+G GK + ++ L A G F NV+S
Sbjct: 69 LLAKQGAGFDVVSGGELARVITASGDPTRCVFSGVGKCIAEIRAALQASIGCF-NVESRE 127
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
+L+ I + G + + LRINP++D HPY+ TG K SKFG+ +E+ L + A
Sbjct: 128 ELQQIEAQAAALGIQAPIALRINPNIDANTHPYITTGIKTSKFGV-SEQEACALYRLAAQ 186
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
LK+ G CHLGS +T + F +A + A+ + +++IGGGLGI Y
Sbjct: 187 SPHLKIEGIACHLGSQLTTLSPFLEA----------LAAESIHLKHIDIGGGLGIAYNQE 236
Query: 313 GAVLPKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+P P+ + + + R+ L LIIEPGR+LI LV V +KTN +F ++
Sbjct: 237 S--VPTPQAYGQAIIKKLAGRDPALRLIIEPGRALIGQAGILVTRVEYLKTNLDHHFAIV 294
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M EL+RP+LY A Q I V P E K+DVVGP+CES+DFLGK R L + G
Sbjct: 295 DAGMTELLRPALYQAEQRIGSVIQKPYLPE-KKYDVVGPICESSDFLGKNRLLQI-EGGD 352
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
LVV+D GAY SM+S YN + R E +V+ S +I
Sbjct: 353 YLVVYDCGAYGFSMSSQYNTRPRCAEVFVQGKQSTLI 389
>gi|254458657|ref|ZP_05072081.1| diaminopimelate decarboxylase [Sulfurimonas gotlandica GD1]
gi|373866972|ref|ZP_09603370.1| diaminopimelate decarboxylase [Sulfurimonas gotlandica GD1]
gi|207084423|gb|EDZ61711.1| diaminopimelate decarboxylase [Sulfurimonas gotlandica GD1]
gi|372469073|gb|EHP29277.1| diaminopimelate decarboxylase [Sulfurimonas gotlandica GD1]
Length = 402
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 212/372 (56%), Gaps = 8/372 (2%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K P Y+Y +++ + K+A G SI+ YA+KAN+N +++H LG GA VS E
Sbjct: 11 KTPLYVYDLDYMSKQYQELKEAFRGRKSILAYAVKANSNLSVVKHFANLGSGADCVSIGE 70
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
+R A AG K IF+G GK +++ A ++ + ++NV+SE +L + + ++ K
Sbjct: 71 VRRAFLAGIPAYKIIFSGVGKSDDEIREAIEKDILYINVESEAELFRVAIIAKELNKISR 130
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +R+NP++DPQ HPY++TG ++KFG+ N + ++ + + L VG H H+GS
Sbjct: 131 ISIRVNPNIDPQTHPYISTGLHDNKFGVDINTAKRMYI--FSKNSDSLDPVGVHFHIGSQ 188
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
+T ++ ++AV++ + + + A E+ + +IGGGLGI Y + KP + +
Sbjct: 189 LTNLEPIYESAVIVADLVRSLEAIDIELKFFDIGGGLGITYDDEATI--KPYDYAQAILG 246
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ +L +I EPGR L AN + V K NG K F+V+DG+M +L+RP+LY AY
Sbjct: 247 TLKGLDLTVICEPGRFLTANAGYFLTKVLYEKQNGAKKFVVVDGAMNDLLRPALYGAYHR 306
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
IE ++ + +E D+VGPVCES DF K+ LP + LVVH AGAY M S Y
Sbjct: 307 IEAITDSA--SEPRTVDIVGPVCESGDFFAKDYLLPELNHNDLLVVHSAGAYGFGMGSNY 364
Query: 449 NLKMRPPEYWVR 460
N + R E V
Sbjct: 365 NTRGRSAEVAVE 376
>gi|163869282|ref|YP_001610538.1| hypothetical protein Btr_2591 [Bartonella tribocorum CIP 105476]
gi|161018985|emb|CAK02543.1| Diaminopimelate decarboxylase [Bartonella tribocorum CIP 105476]
Length = 424
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 223/398 (56%), Gaps = 3/398 (0%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E + D+ + V PFY YS + + Y++A +G+ ++I YA+KAN+N I
Sbjct: 9 GMLHAEGCSLTDLAQEV-GTPFYCYSANALVTRFKDYQKAFQGMPTLIAYAVKANSNQAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L L G GA +VS ELR AL G + +++G GK + ++ A + ++ NV+SE
Sbjct: 68 LRLLAANGAGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQNIYCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + K V LRINPDVD + H + TG +KFGI + +
Sbjct: 128 PELEQLSQRAVALSKTARVSLRINPDVDAKTHKKITTGKSENKFGIPLFLAREAYKKAAS 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
P L++ G H+GS I + F +A +L+ + + ++ + G + +++IGGGLGI Y
Sbjct: 188 LPG-LQVCGIDMHIGSQICDLKPFEEAFLLIADCVRQLWSDGCAITHIDIGGGLGIAYGC 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
LP P + V++ + +++++EPGRS++ LV V +K +NF+++D
Sbjct: 247 EQHTLPSPFDYAALVKKHIAPLGIDIVVEPGRSIVGQAGVLVTSVLYLKKGQGRNFVIVD 306
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +L+RP+LYDA+Q++ LV A +DA + + D+VG VCE+ D+L +R LP G
Sbjct: 307 AAMNDLMRPTLYDAWQNVVLVKQAAKDAPLIRADIVGSVCETGDYLALDRCLPILAPGDL 366
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY MASTYN ++ PE V+ +I P
Sbjct: 367 LAITQAGAYGAVMASTYNSRLLIPEVLVQDTRYAVIRP 404
>gi|395792720|ref|ZP_10472144.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|395432277|gb|EJF98266.1| diaminopimelate decarboxylase [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 424
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 143/408 (35%), Positives = 225/408 (55%), Gaps = 8/408 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS D L+ E + ++ V PFY YS + +++ Y+ A + S+I YA+
Sbjct: 2 HFFSYHQD-VLHVEGFSLLELARNV-GTPFYCYSASALLAHLKDYQNAFRDMPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEG 183
KAN+N +L L G GA +VS ELR L G + +++G GK +E++ A AQ+
Sbjct: 60 KANSNQAVLRLLANHGAGADVVSEGELRRVLAVGIPAHRVVYSGVGKKVEEIDFALAQDI 119
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + + K V LRINP+VD + H + TG +KFGI L
Sbjct: 120 CCFNVESEPELEQLSARAVALSKTARVSLRINPNVDAKTHKKITTGKSENKFGI-PLSLA 178
Query: 244 WFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
W DA K A L + G H+GS I + F DA ++ +++ ++ G+ + +++I
Sbjct: 179 W--DAYKKAAQLPGLDVCGVDLHIGSQICDLKPFEDAFMIAADFVRQLWNDGYAITHIDI 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y H +P P + + V++ + +N+I+EPGRS++ LV V +K
Sbjct: 237 GGGLGIPYGHEQHPIPSPFDYAELVKKHIAPLGINIILEPGRSIVGEAGVLVTSVLYLKK 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+NF+++D +M + +RP+LYDA+Q + V A +A + + D+VGPVCE+ D+L R
Sbjct: 297 GEGRNFVIVDAAMNDFMRPTLYDAWQDVIPVEKASMNAPLIRADIVGPVCETGDYLALNR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G L + AGAY MASTYN ++ PE V+ + ++ P
Sbjct: 357 SMPVVVSGDLLAITGAGAYGAVMASTYNSRLLVPEVLVQDMRYAVVRP 404
>gi|399007665|ref|ZP_10710167.1| diaminopimelate decarboxylase [Pseudomonas sp. GM17]
gi|398119437|gb|EJM09126.1| diaminopimelate decarboxylase [Pseudomonas sp. GM17]
Length = 415
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGQLFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGAADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 SDELERLQQVAAELKVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLAPFIDALDRLLDLVDRLGECGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYVKAVRERLDGRDLELVFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D + +D+VGP+CE+ DFL KER+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSAVR--PRDGQARTYDIVGPICETGDFLAKERQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|296271966|ref|YP_003654597.1| diaminopimelate decarboxylase [Arcobacter nitrofigilis DSM 7299]
gi|296096141|gb|ADG92091.1| diaminopimelate decarboxylase [Arcobacter nitrofigilis DSM 7299]
Length = 402
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 216/378 (57%), Gaps = 19/378 (5%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K P+Y+Y IT K A S++ YA+KAN+N +++HL LG GA VS E
Sbjct: 13 KTPYYVYDFDHITSQYNELKDAFRARKSLVAYAVKANSNLSVIKHLANLGAGADCVSIGE 72
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDSEFDLENIVVASRIAGKKVN 209
+R AL+ G P K IF+G GK+ ++ A + + + +NV+S+ +L + + ++ K
Sbjct: 73 VRRALKVGIAPYKIIFSGVGKIDAEIREALSLDILMINVESDAELNRVEMIAKELDKIAR 132
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
+ +R+NP++DPQ HPY++TG +KFG+ + + K N L VG H H+GS +
Sbjct: 133 ISIRVNPNIDPQTHPYISTGLHENKFGVDIDTAKRMYIQCKNSDN-LDPVGIHLHIGSQL 191
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT---- 325
T++D +++ ++ + + ++A E+ +++IGGGLGI Y LIDT
Sbjct: 192 TQLDPIKESVKIVADLVRNLKAIKIELSFMDIGGGLGIVY--------DNEKLIDTNEYA 243
Query: 326 --VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
V E + ++ ++ EPGR ++ N + V K NG K F+++DG+M +LIRP+LY
Sbjct: 244 QSVLETMFGLDITVVCEPGRFMVGNAGIFITKVLYEKVNGNKRFVIVDGAMNDLIRPALY 303
Query: 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMS 443
+A IE++ + ++IS ++VGP+CES DF K ELP + + ++ AGAYC +
Sbjct: 304 NAQHKIEVIDKS---SDISDCNLVGPICESGDFFAKNIELPKTEHNDLVAIYSAGAYCFT 360
Query: 444 MASTYNLKMRPPEYWVRS 461
MAS YN + R E V +
Sbjct: 361 MASNYNTRGRVAEIAVEN 378
>gi|71905849|ref|YP_283436.1| diaminopimelate decarboxylase [Dechloromonas aromatica RCB]
gi|71845470|gb|AAZ44966.1| diaminopimelate decarboxylase [Dechloromonas aromatica RCB]
Length = 420
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 224/393 (56%), Gaps = 11/393 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL----EGLNSIIGYAIKAN 127
+G L+ E V + + + P Y+YS+ + ++ + L G +++ YA+KAN
Sbjct: 8 NGVLHAESVALPAIADQF-GTPAYVYSRAALEASLREFHDVLGGHVAGQGALVCYAVKAN 66
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-V 186
+N IL +LG G +VSG EL+ L AG DP K +F+G GK +++ LA G+F
Sbjct: 67 SNLAILNVFARLGAGFDIVSGGELQRVLAAGADPKKVVFSGVGKTADEMKLALDVGIFCF 126
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NV+S +LE + + GKK + LR+NP+VDP+ HPY++TG K +KFG+ +
Sbjct: 127 NVESAAELERLNEVASQCGKKAPISLRVNPNVDPKTHPYISTGLKGAKFGVAYDNALDLY 186
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
A P+ +++ G CH+GS + F +A ++ +D++ A+G + +L++GGGLG
Sbjct: 187 RRAAALPS-IEVTGIDCHIGSQLLDPSPFVEALDRILALVDQMAAEGIHIHHLDLGGGLG 245
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y A P + + + + + R L +++EPGR L+ N L+ + +K KN
Sbjct: 246 IKYNAEQA-QPTVASYLTPLLDKLAGRGLQVVLEPGRRLVGNAGLLLTRIEYLKQGEAKN 304
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F +ID +M +L+RP+LY+A+ I V P+ +++DVVGPVCE+ DFLG+ R L
Sbjct: 305 FAIIDAAMNDLMRPALYEAWHDINPV--VPRSGVATEYDVVGPVCETGDFLGQARPL-VV 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+MAS YN + R E V
Sbjct: 362 EAGDLLAVMSAGAYGMAMASNYNTRPRAVEVMV 394
>gi|423201493|ref|ZP_17188073.1| diaminopimelate decarboxylase [Aeromonas veronii AER39]
gi|404616850|gb|EKB13792.1| diaminopimelate decarboxylase [Aeromonas veronii AER39]
Length = 416
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 149/394 (37%), Positives = 229/394 (58%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ A G L E +Q ++E P Y+YS+ + R+ A+ +A + +I YA+KA
Sbjct: 4 FNYDAAGQLQAEQTSLQQLVEQY-GTPLYVYSRATLERHWHAFDKAAGDIPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L +LG G +VSG EL L AG DP K +F+G K ++ LA + +
Sbjct: 63 NSNLALLNLLARLGSGFDIVSGGELSRVLAAGGDPAKVVFSGVAKSEAEMRLALDKEILC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++SE +LE + + GKK V +R+NPD+D HPY++TG K +KFGI E
Sbjct: 123 FNLESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIELAPAI 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A N +++VG CH+GS +T+++ F +AA ++ ID + A+G + +L++GGGL
Sbjct: 183 YRKAAAMAN-IEIVGVDCHIGSQLTELNPFMEAADKLLRLIDGLAAEGIHIHHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G++Y P P + +++ + R+L L+ EPGR+++AN L+ V +K T+
Sbjct: 242 GVNY--GSEQPPHPTEYAEALKQKLAGRDLTLLFEPGRAIVANAGVLLTRVEYLKPGETR 299
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF +ID M +++RPSLY A+ +I V A + +DVVGPVCE+ DFLGKER L
Sbjct: 300 NFALIDAGMNDMLRPSLYGAWMNIIEVDSRAGHAP-ALYDVVGPVCETGDFLGKERTLAI 358
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G+ L V AGAY +M+S YN + R E V
Sbjct: 359 AE-GSLLAVRSAGAYGFTMSSNYNTRPRAAEVLV 391
>gi|154245684|ref|YP_001416642.1| diaminopimelate decarboxylase [Xanthobacter autotrophicus Py2]
gi|154159769|gb|ABS66985.1| diaminopimelate decarboxylase [Xanthobacter autotrophicus Py2]
Length = 422
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 214/406 (52%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ EDV + + V + PFY YS + R+ + + +A G + ++ YA+
Sbjct: 2 HHFDYR-NGRLFAEDVDITPLAAEV-RTPFYCYSSATLERHYQVFMEAFSGRDVLLCYAL 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ L +LG GA +VS EL A AG + +F+G GK E++ A G+
Sbjct: 60 KANSNQSVIATLARLGAGADIVSAGELARARAAGVPAERIVFSGVGKTREEMAAALDGGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + G V +R+NPDVD + H ++TG +KFGI + +
Sbjct: 120 LCFNVESEPELAALSEVATAMGVSAPVSIRVNPDVDAKTHKKISTGKSATKFGIPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
D P L + G H+GS IT + F +A L+ + A G + ++++GG
Sbjct: 180 EVYDYAARLPG-LAITGVDMHIGSQITDMAPFDNAVTLLAELARDLLAAGHRLHHMDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y + V P P + V + L L+ E GR L+AN LV V VK
Sbjct: 239 GLGVPYAASDPVPPPPSAYAEVVSRALGDLKLPLVFEMGRMLVANAGILVTRVIYVKEGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+V+D +M +LIRP+LY+A+ I V DA + DVVGPVCE+ DFL +R L
Sbjct: 299 GKTFVVVDAAMNDLIRPTLYEAHHDIIPVVEPAADAPLVVADVVGPVCETGDFLALDRPL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G L V AGAY ASTYN + PE VR + ++ P
Sbjct: 359 PRLKAGDLLAVMTAGAYGAVQASTYNTRPLVPEVLVRGAAAAVVRP 404
>gi|192293581|ref|YP_001994186.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris TIE-1]
gi|192287330|gb|ACF03711.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris TIE-1]
Length = 421
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 149/403 (36%), Positives = 218/403 (54%), Gaps = 11/403 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + V PFY YS + R+ + +A GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEGVSLASIAQDV-GTPFYCYSSATLERHYRVFTEAFAGLDALVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L KLG GA +VSG EL+ AL AG P+K +F+G GK +L A A + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELQRALAAGIPPSKIVFSGVGKTEAELRAALAHDIKCLNVES 126
Query: 191 EFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E +LE + SRIA G+ + LR+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELEQL---SRIAVETGRTARISLRVNPDVDSGTHAKISTGKSENKFGIPIRHAREVYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
P +++ G H+GS I + A + +I +R G V +++ GGGLGI
Sbjct: 184 RAAKLPG-IQVTGVDVHIGSQIVDLAPMEAAFRKVAEFIHVLRGDGHTVSHVDFGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
YY P+P + V+ + + L+ EPGR ++ N LV V VK K F
Sbjct: 243 PYYEDRDAPPEPFAYAEMVKRVTHNLGCTLLFEPGRMIVGNAGILVAKVIYVKHGDGKTF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVS-PAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
++ID +M +LIRP+LY+AY I V PAP A + DVVGPVCE+ D+L +R+LP
Sbjct: 303 VIIDAAMNDLIRPTLYEAYHEIIAVQQPAPGVATMVA-DVVGPVCETGDYLALDRKLPEL 361
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + + AGAY A TYN + PE V+ ++ P
Sbjct: 362 KAGDLIAIMTAGAYGAVQACTYNTRALVPEVLVKDDQVAVVRP 404
>gi|329118402|ref|ZP_08247108.1| diaminopimelate decarboxylase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465448|gb|EGF11727.1| diaminopimelate decarboxylase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 406
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 151/389 (38%), Positives = 217/389 (55%), Gaps = 14/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L CE++ ++ E P Y+YS+ + AY+ A LN +I YA+KAN N ++
Sbjct: 3 LRCENLSYTELAERYGT-PLYVYSQSALDEAFAAYQTAFAALNPLICYAVKANGNLSLIR 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+LG G +VSG EL L AG K IF+G GK ++ A + G+ NV+S +
Sbjct: 62 RFAELGSGFDIVSGGELARVLAAGGSAAKTIFSGVGKSAAEMEYALKAGIKCFNVESLPE 121
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
LE + + IAG+ + V LRINPDVD Q HPY++TG K +KFGI +
Sbjct: 122 LERL---NGIAGRLNTRAPVSLRINPDVDAQTHPYISTGLKANKFGIAMRDAEAAYARAA 178
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L++VG CH+GS + ++D +A ++ D++ AQG E+ ++++GGG+GI Y
Sbjct: 179 ELPH-LRIVGIDCHIGSQLIRLDPLIEACERILALADRLAAQGIELQHIDLGGGVGIVYR 237
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P V++L+ SR L LI+EPGRSL+ N L+ V VK N KNF+++
Sbjct: 238 DEDT--PDLSAYAAAVQKLIGSRPLGLILEPGRSLVGNAGDLLTRVEYVKRNEDKNFVIV 295
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY AY IE P + D+VGPVCE+ DFL K+R + G
Sbjct: 296 DAAMNDLMRPALYQAYHRIEPAEPPAAAPFTA--DIVGPVCETGDFLAKDRRI-AAQAGD 352
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LVV AGAY SMA YN + R E V
Sbjct: 353 LLVVRGAGAYAASMAGNYNARRRAAEVLV 381
>gi|83953467|ref|ZP_00962189.1| diaminopimelate decarboxylase [Sulfitobacter sp. NAS-14.1]
gi|83842435|gb|EAP81603.1| diaminopimelate decarboxylase [Sulfitobacter sp. NAS-14.1]
Length = 421
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ V PFY+YS + R+ +A+ AL+G++ ++ YA+KAN+N
Sbjct: 8 DGALFAEDVAISEIAAAV-GTPFYVYSTATLLRHFKAFDDALDGMDHLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L + G G +VS E A AG K +F+G GK + ++ LA + G+ NV+S
Sbjct: 67 VLKTLAQAGAGMDVVSAGEYLRAKAAGVPGDKIVFSGVGKTVSEIRLALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + +R GK + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEVLDAVARSMGKVAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYRMAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++VG H+GS +T + F A + +++RA G + L++GGGLGI Y
Sbjct: 187 AMPG-LEVVGIDVHIGSQLTDLTPFELAYQKVAELTEQLRADGHTIRRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ A P P + V++ + + IEPGR + N +V+ V VK+ ++F++I
Sbjct: 246 RSNAAPPLPTDYGAMVQKTLGHLGCEIEIEPGRLIAGNAGLMVSEVIYVKSGEGRDFLII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP++Y+A+ I V A AE +D+VGPVCES D K+R +P G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIIPVVEAEAGAEQQPYDIVGPVCESGDTFAKQRMMPKLVAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMASEYNSRALIPEVLV 394
>gi|404397570|ref|ZP_10989360.1| diaminopimelate decarboxylase [Ralstonia sp. 5_2_56FAA]
gi|348612659|gb|EGY62273.1| diaminopimelate decarboxylase [Ralstonia sp. 5_2_56FAA]
Length = 423
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 226/393 (57%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L E V + D + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 11 RQEGALMIEGVAL-DAIAAQFGTPTYVYSRAALTANYRAYAAACEGRNAHVQYAMKANSN 69
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VS EL+ L AG K +F+G GK +++ A + GV NV
Sbjct: 70 LAVLQVFAQLGAGFDIVSAGELKRVLAAGAPAAKVVFSGVGKSADEMRFALKVGVACFNV 129
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ +++ A
Sbjct: 130 ESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYRA 189
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 190 AAAMPN-LRVVGIDCHIGSQITEVSPYLDALDKVLDVVTQLDAEGIRLAHIDVGGGLGIT 248
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D V + + ++ EPGRSL+ N L+ V +K +KN
Sbjct: 249 YTDETPPDITAFARTLLDRVEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEYLKPGASKN 307
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V + Q A + +DVVGPVCES D+LG++R L
Sbjct: 308 FCIVDAAMNDLARPAMYEAYHHIVPVRES-QSAPVV-YDVVGPVCESGDWLGRDRSLAV- 364
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 365 QPGDVLAILSAGAYGFTMSSNYNTRNRAAEVIV 397
>gi|399003750|ref|ZP_10706404.1| diaminopimelate decarboxylase [Pseudomonas sp. GM18]
gi|398121988|gb|EJM11597.1| diaminopimelate decarboxylase [Pseudomonas sp. GM18]
Length = 415
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G + ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGTSHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGRADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDTAARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|238021782|ref|ZP_04602208.1| hypothetical protein GCWU000324_01685 [Kingella oralis ATCC 51147]
gi|237866396|gb|EEP67438.1| hypothetical protein GCWU000324_01685 [Kingella oralis ATCC 51147]
Length = 403
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 213/371 (57%), Gaps = 13/371 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + +T AY+ A G ++ YA+KAN N ++ H +LG G VS E+
Sbjct: 16 PLYVYHQAALTAAFAAYQTAFSGCQPLVCYAVKANGNLSVIRHFAQLGSGFDTVSAGEIA 75
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI-VVASRIAGKKVNV 210
L AG D +K IF+G GK ++ A G+ NV+S +LE + VA R+ GK +
Sbjct: 76 RVLAAGGDASKIIFSGVGKTEAEMEYALNAGIKCFNVESLPELERLNDVAGRL-GKIAPI 134
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
RINPDVD + HPY++TG K +KFGI + + P+ +K++G CH+GS +T
Sbjct: 135 SFRINPDVDAKTHPYISTGLKANKFGIAMRDAEQAYQRAASLPH-IKIIGVDCHIGSQLT 193
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY--HTGAVLPKPRNLIDTVRE 328
+ A ++ IDK+ AQG + +L++GGG+GI Y HT P V
Sbjct: 194 DLSPLIAACERLIALIDKLSAQGIALQHLDLGGGVGIVYKDEHT----PDLHAYAQAVEP 249
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
L+ +R L+L++EPGRSL+ N L+ V VK KNF+V+D +M +L+RP+LY AY
Sbjct: 250 LLKARGLSLVLEPGRSLVGNAGVLLTRVEYVKHGEEKNFVVVDAAMNDLMRPALYQAYHA 309
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
+E VS P +I+ D+VGP+CE+ DF+GKER++ +G L + AGAY SMAS Y
Sbjct: 310 VENVS-RPDAPQITA-DIVGPICETGDFIGKERQIGAA-QGDILAIRSAGAYASSMASNY 366
Query: 449 NLKMRPPEYWV 459
N + R E +
Sbjct: 367 NARCRAAEVMI 377
>gi|330501238|ref|YP_004378107.1| diaminopimelate decarboxylase [Pseudomonas mendocina NK-01]
gi|328915524|gb|AEB56355.1| diaminopimelate decarboxylase [Pseudomonas mendocina NK-01]
Length = 415
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 223/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSALAQRF-GTPTYVYSRAHIEWQYRAYADALAGMPHLVCFAVKANSNIG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG +P++ +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSSGELERVLAAGGEPSRIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G K V LR+NPDVD HPY++TG K +KFGI E+ +
Sbjct: 127 SVELERLQKVAAELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L ++G CH+GS +T ++ F DA ++ +DK+ +G + +L++GGGLG+ Y
Sbjct: 187 ELPN-LDVIGVDCHIGSQLTTLEPFLDALDRLLLLVDKLAERGITIKHLDLGGGLGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VR+ + R+L+L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEQP--PLAGDYIAAVRKRLAGRDLSLVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P++ E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSPVQ--PREGEARNYDLVGPICETGDFLAKDRQL-VLEEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|407773068|ref|ZP_11120369.1| diaminopimelate decarboxylase [Thalassospira profundimaris WP0211]
gi|407283532|gb|EKF09060.1| diaminopimelate decarboxylase [Thalassospira profundimaris WP0211]
Length = 423
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 228/404 (56%), Gaps = 14/404 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY E V ++++ + V PF+ YS + R+ + Y A +GL++ + +A+KAN+N
Sbjct: 8 NGELYAEGVSIREMADKV-GTPFFCYSTATLERHYKVYADAFDGLDATVCFAVKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG GA +VS E+R ALRAG P K IF+G GK ++ A + +NV+S
Sbjct: 67 VLKTLANLGAGADVVSVGEMRRALRAGMPPAKIIFSGVGKADAEMREALDADIAQINVES 126
Query: 191 EFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFL 246
+ +V +R+A GKK + LR+NP VD + H +ATG +KFGI ++ +
Sbjct: 127 ---IPELVELNRVAIDMGKKARIALRVNPHVDAKTHEKIATGKAENKFGIDWTRAIEVYR 183
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
+A A + +++ G H+GS +T + FR+A + ++++R++G ++ L++GGGLG
Sbjct: 184 EA--AAMDGIEVTGIAMHIGSQLTDLAPFREAFTRLAGLVEQLRSEGIDIRNLDLGGGLG 241
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y G P P VRE V ++ +EPGR + N +V+ V +K K
Sbjct: 242 IAY--QGETPPLPDAYGQMVRETVGHLGCHITLEPGRLIAGNAGIMVSRVMYIKDGEAKR 299
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +LIRP+LY AY I V + K DVVGPVCE+ D GK+R+LP
Sbjct: 300 FVILDAAMNDLIRPTLYGAYHEIIPVDEQTDGDKQVKVDVVGPVCETGDTFGKDRDLPDD 359
Query: 427 DRGAGLV-VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ LV V AGAY M+STYN + PE V+ I+ P
Sbjct: 360 LKAGDLVAVMSAGAYGAVMSSTYNTRALTPEVLVKGNNFAIVRP 403
>gi|387896319|ref|YP_006326616.1| diaminopimelate decarboxylase [Pseudomonas fluorescens A506]
gi|387159516|gb|AFJ54715.1| diaminopimelate decarboxylase [Pseudomonas fluorescens A506]
Length = 415
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 221/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I ++ AL+G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRSFTDALDGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKIVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFLDALDRLLALIDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIQAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V+ P+ +E +D+VGP+CE+ DFL K+REL T + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVT--PRTSEARAYDIVGPICETGDFLAKDREL-TLEEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|17986368|ref|NP_539002.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|17981958|gb|AAL51266.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
Length = 421
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 217/386 (56%), Gaps = 3/386 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + G++ NV+S
Sbjct: 67 VLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPE 456
+ + GAY ++STYN ++ PE
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPE 391
>gi|309782874|ref|ZP_07677594.1| diaminopimelate decarboxylase [Ralstonia sp. 5_7_47FAA]
gi|308918298|gb|EFP63975.1| diaminopimelate decarboxylase [Ralstonia sp. 5_7_47FAA]
Length = 419
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 148/393 (37%), Positives = 226/393 (57%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L E V + D + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 7 RQEGALMIEGVAL-DAIAAQFGTPTYVYSRAALTANYRAYAAACEGRNAHVQYAMKANSN 65
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VS EL+ L AG K +F+G GK +++ A + GV NV
Sbjct: 66 LAVLQVFAQLGAGFDIVSAGELKRVLAAGAPAAKVVFSGVGKSADEMRFALKVGVACFNV 125
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ +++ A
Sbjct: 126 ESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYRA 185
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 186 AAAMPN-LRVVGIDCHIGSQITEVSPYLDALDKVLDVVTQLDAEGIRLAHIDVGGGLGIT 244
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D V + + ++ EPGRSL+ N L+ V +K +KN
Sbjct: 245 YTDETPPDITAFARTLLDRVEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEYLKPGASKN 303
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V + Q A + +DVVGPVCES D+LG++R L
Sbjct: 304 FCIVDAAMNDLARPAMYEAYHHIVPVRES-QSAPVV-YDVVGPVCESGDWLGRDRSLAV- 360
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 361 QPGDVLAILSAGAYGFTMSSNYNTRNRAAEVIV 393
>gi|410692773|ref|YP_003623394.1| Diaminopimelate decarboxylase (DAP decarboxylase ) [Thiomonas sp.
3As]
gi|294339197|emb|CAZ87551.1| Diaminopimelate decarboxylase (DAP decarboxylase ) [Thiomonas sp.
3As]
Length = 430
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 223/384 (58%), Gaps = 14/384 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEG--LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P Y+YS+ I + Y QA + ++ + YA+KAN+N +L+ L +LG G +VS E
Sbjct: 39 PTYVYSRASIEEAAQRYSQAAQASSVHVALRYAVKANSNLAVLQLLARLGWGFDIVSAGE 98
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
L+ L AG + K +F+G GK +D+ A GV NV+S +L + ++ AGK
Sbjct: 99 LKRVLAAGGEAGKVVFSGVGKSADDMRFALDVGVECFNVESPSELAALNRVAQAAGKVAR 158
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
V LR+NPDVD HPY++TG K +KFGI +++ Q L A +++LVG CH+GS
Sbjct: 159 VALRVNPDVDAGTHPYISTGLKTNKFGISQDQAAQLALQ--TAQLEQVQLVGIACHIGSQ 216
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
IT V+ + DA +++ ++++ +G +++++++GGGLGI Y T P P+ + +
Sbjct: 217 ITTVEPYLDALDKVLDLVEQMEHKGAKIEHIDLGGGLGIRY--TDETPPTPQEWLSPLLA 274
Query: 329 LVLSRNL---NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDA 385
+ +R ++IEPGRS++ N L+ +K+ K+F V+D M +LIRP+LY A
Sbjct: 275 RISARGFGHRTVVIEPGRSIVGNAGVLLTRTLFLKSTPVKHFAVVDAGMNDLIRPALYSA 334
Query: 386 YQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA 445
Q + L ++ K+D+VGPVCESAD+L ++R L + G L + +GAY M MA
Sbjct: 335 EQAVVLAE--QREGSALKYDIVGPVCESADWLARDRAL-VLEEGDLLAILSSGAYGMVMA 391
Query: 446 STYNLKMRPPEYWVRSLISIIILP 469
S YN + RP E + + +I P
Sbjct: 392 SNYNSRGRPAEVMIDGATATLIRP 415
>gi|88861274|ref|ZP_01135906.1| putative diaminopimelate decarboxylase [Pseudoalteromonas tunicata
D2]
gi|88816755|gb|EAR26578.1| putative diaminopimelate decarboxylase [Pseudoalteromonas tunicata
D2]
Length = 416
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 219/390 (56%), Gaps = 9/390 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E V VQD+ T P Y+YS+ + R+ A+ A G + ++ YA+KAN+N
Sbjct: 8 DNQLFAEGVSVQDIA-TQFGTPCYVYSRATLERHYHAFTDAAAGQHHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL + AG DP K +F+G K ++ A + G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSQGELARVVAAGGDPRKVVFSGVAKTAHEIRYALELGIKCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE I + G+ + +R+NPD+D + HPY++TG K +KFGI +
Sbjct: 127 EAELERISDVATELGQTAPISIRVNPDIDAKTHPYISTGLKENKFGIEIHRAVSVYQHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P + + G H+GS +T+V+ F A ++ I +++ + +L++GGGLG+ Y
Sbjct: 187 TLPG-ISIEGIDFHIGSQLTEVEPFLAALDKVLAIIKQLKTLNIHIKHLDVGGGLGVAYL 245
Query: 311 HTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P + + V L +L L+ EPGR++ AN L+ V +K N KNF +
Sbjct: 246 AEEP--PHPSSYVSQLVERLSEFSDLELVFEPGRAIAANAGILITQVEFLKQNQGKNFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D M +L+RPSLY A+Q+I VS P+ S +D+VGPVCE+ DFLGK+REL + +G
Sbjct: 304 VDAGMNDLLRPSLYQAWQNIIAVS--PRSGTPSSYDIVGPVCETGDFLGKDREL-SLQQG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY SM+S YN + R E V
Sbjct: 361 DLLAVRSAGAYGFSMSSNYNSRPRVAEIMV 390
>gi|331005625|ref|ZP_08328994.1| Diaminopimelate decarboxylase [gamma proteobacterium IMCC1989]
gi|330420550|gb|EGG94847.1| Diaminopimelate decarboxylase [gamma proteobacterium IMCC1989]
Length = 417
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 221/397 (55%), Gaps = 12/397 (3%)
Query: 75 LYCEDVRVQDVMETVEKR---PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
L CE Q ++T+ K+ P Y+YS+ T++ Y+ AL +I YA+KAN+N
Sbjct: 11 LMCE----QLSLDTIAKQYGTPAYVYSRAAFTQHYCEYRDALGDHPGMICYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG G +VS EL ++AG DP + +F+G K ++ A + GV+ N++S
Sbjct: 67 VLNVLAKLGSGFDIVSIGELERVIQAGGDPQRIVFSGVAKTEGEMRRALELGVYCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L + + G + + LR+NPDVD + HPY++TG K +KFG+ +
Sbjct: 127 IPELSRLQTVAESMGVQAPISLRVNPDVDAETHPYISTGLKENKFGVDIDHAVEIYQHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L + G CH+GS +T V F DA ++ ID++ QG +++L++GGGLG+ Y
Sbjct: 187 TLPN-LTIKGVDCHIGSQLTSVAPFLDALDRVLALIDQLAEQGIIIEHLDLGGGLGVVYN 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
PK + ID V+ + RNL+L EPGRS+ AN L+ V +K KNF +I
Sbjct: 246 DEQP--PKIGDYIDEVKRRIAGRNLSLSFEPGRSIAANAGVLLTKVEFLKPTEHKNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M + IRPSLY A+Q + V+ D +D+VGPVCE+ DFL K+REL D G
Sbjct: 304 DAGMNDNIRPSLYRAWQKVLPVTETKADTATELWDLVGPVCETGDFLAKDRELAL-DEGD 362
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L + +GAY +M+S YN + R E V S II
Sbjct: 363 YLALMSSGAYGFTMSSNYNSRGRAIEIMVDGDKSHII 399
>gi|395785280|ref|ZP_10465012.1| diaminopimelate decarboxylase [Bartonella tamiae Th239]
gi|423717821|ref|ZP_17692011.1| diaminopimelate decarboxylase [Bartonella tamiae Th307]
gi|395424827|gb|EJF90998.1| diaminopimelate decarboxylase [Bartonella tamiae Th239]
gi|395427221|gb|EJF93337.1| diaminopimelate decarboxylase [Bartonella tamiae Th307]
Length = 425
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 212/388 (54%), Gaps = 3/388 (0%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E+V + + + V PFY YS I Y+ A ++I YA+KAN+N I
Sbjct: 10 GILHAENVSLPLIAQQV-GTPFYCYSTRYINEQFALYRDAFSTQRAMIAYALKANSNQAI 68
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSE 191
L L G GA +VS EL AL+AG + +++G GK E++ A + NV+SE
Sbjct: 69 LTLLANQGAGADVVSKGELMRALQAGIPAKRIVYSGVGKTTEEIDFALSNDICSFNVESE 128
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE++ S GK + LRINPDVD + H +ATG +KFGI +
Sbjct: 129 PELEHLSARSVALGKTARISLRINPDVDAKTHKKIATGKSENKFGIPIKNASQTYQHALQ 188
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
P L + G H+GS I+++ F DA ++ +++ +RA G ++++++GGGLGI Y H
Sbjct: 189 LPG-LSVQGVDVHIGSQISELQPFDDAFTIVADFVRHLRADGILIEHVDVGGGLGIQYRH 247
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+LP V++ N+ +I+EPGR+++ N LV+ V K KNF+++D
Sbjct: 248 DNHILPSVEEYARIVKKHFDPLNVEIILEPGRNIVGNAGILVSSVIYFKKGEGKNFVIVD 307
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LYDA+Q I + A E D+VGPVCE+ D+LG ER LP
Sbjct: 308 AAMNDLIRPTLYDAWQDIMPIKEAVIGVESVVADIVGPVCETGDYLGLERSLPLLHSDDL 367
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY +A+TYN + PE V
Sbjct: 368 IAILGAGAYGAVLANTYNTRRLIPEVLV 395
>gi|149191481|ref|ZP_01869730.1| diaminopimelate decarboxylase [Vibrio shilonii AK1]
gi|148834669|gb|EDL51657.1| diaminopimelate decarboxylase [Vibrio shilonii AK1]
Length = 417
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 228/392 (58%), Gaps = 9/392 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+ + + E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAEETSLTQLAEQY-GTPLYVYSRATLERHWNAFDKSVGDHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VSG EL + AG +P+K +F+G GK +++ A + G+
Sbjct: 63 NSNIGVLNTLARLGSGFDIVSGGELERVVAAGGEPSKVVFSGVGKTAQEMRRALELGIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + G + LRINPDVD HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELERLNQVAGEMGVVAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ PN L + G CH+GS +T ++ F DA ++ ID++RA G + +L++GGGL
Sbjct: 183 YKFAQSLPN-LAVHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGVNIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVYRDE--LPPQPSDYAKALLARLENHPELELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF ++D +M +L+RP+LY A+Q I VS P++ E +D+VGP+CE+ DF+GK+R L
Sbjct: 300 KNFAIVDAAMNDLMRPALYQAWQDIIPVS--PREGEAITYDLVGPICETGDFIGKDRSL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
++ L V AGAY M+S YN + R E
Sbjct: 357 VLEQNDLLAVRSAGAYGFVMSSNYNTRPRVAE 388
>gi|336316578|ref|ZP_08571472.1| diaminopimelate decarboxylase [Rheinheimera sp. A13L]
gi|335879125|gb|EGM77030.1| diaminopimelate decarboxylase [Rheinheimera sp. A13L]
Length = 416
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 231/396 (58%), Gaps = 20/396 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ EDV + D+ P Y+YS+ I R+ +A+ +A G + ++ YA+KAN+N
Sbjct: 8 DQNLFAEDVALADIAAEF-GTPTYVYSRATIERHYKAFAEAAPGRDLLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS ELR L+AG D K +F+G GK + ++ A Q G+ NV+S
Sbjct: 67 LLNLLARLGSGFDIVSEGELRRVLQAGGDAKKVVFSGVGKSVTEIEYALQTGIKCFNVES 126
Query: 191 EFDLENI-VVASRIAGKKVNVL----LRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244
+LE I VASR+ N++ +R+NPD+D + HPY++TG K +KFGI N+ +
Sbjct: 127 IPELERIQQVASRL-----NIIAPISIRVNPDIDAKTHPYISTGLKANKFGIDINDAVAM 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ A A + LK+ G CH+GS +T+ F DA ++ IDK+ G + +++IGGG
Sbjct: 182 YQQADAA--SHLKVCGVDCHIGSQLTETQPFLDALDKLLALIDKLATLGIHLSHIDIGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
LG+ Y G P P V E L L++I EPGR+++AN L+ V +K
Sbjct: 240 LGVPY--DGETPPHPAEYAAKVVEKLEAYPQLSIIFEPGRAIMANAGVLLTKVEYLKPGQ 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F ++D +M +LIRP+LY A+Q I V P ++ +DVVGPVCE+ DFLGK+R L
Sbjct: 298 EKHFAIVDAAMNDLIRPALYSAWQAIIAVQQKPHIPAVT-YDVVGPVCETGDFLGKDRAL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G LVV AGAY +M+S YN + R E V
Sbjct: 357 AL-EPGDLLVVRSAGAYGFTMSSNYNSRPRAAEVLV 391
>gi|421138409|ref|ZP_15598473.1| diaminopimelate epimerase [Pseudomonas fluorescens BBc6R8]
gi|404510422|gb|EKA24328.1| diaminopimelate epimerase [Pseudomonas fluorescens BBc6R8]
Length = 415
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I ++ ALEG S++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSFADALEGTPSLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKADKIVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTSLPPFLDALDRLLALVDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLVSDYIKAVRERLEGRDLTLMFEPGRYIVANAGLLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V P+ E +D+VGP+CE+ DFL KER+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVK--PRAGEGRSYDIVGPICETGDFLAKERQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|384173420|ref|YP_005554797.1| diaminopimelate decarboxylase [Arcobacter sp. L]
gi|345473030|dbj|BAK74480.1| diaminopimelate decarboxylase [Arcobacter sp. L]
Length = 402
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 133/378 (35%), Positives = 217/378 (57%), Gaps = 19/378 (5%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
+ P+Y+Y IT+ E K A S+I YA+KAN+N +++HL LG GA VS E
Sbjct: 13 QTPYYVYDFDHITKQYEELKGAFRARKSLIAYAVKANSNLSVIKHLANLGAGADCVSIGE 72
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVN 209
++ AL+ G K IF+G GK+ +++ A + + +N++S +L+ + V ++ GK
Sbjct: 73 VKRALKVGIPAYKIIFSGVGKIDDEIRQALELDILMINIESAAELDRVEVIAKELGKVAR 132
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
+ +R+NP++DP+ HPY++TG +KFG+ + + K N L VG HCH+GS +
Sbjct: 133 ISIRVNPNIDPKTHPYISTGLHENKFGVDIDTAKRMYIQCKNSEN-LDPVGIHCHIGSQL 191
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT---- 325
T+++ ++A ++ + + ++A E+ +++IGGGLGI Y K LIDT
Sbjct: 192 TQLEPIKEAVKIVADLVRNLKAIKIELSFMDIGGGLGIVY--------KDEKLIDTNEYA 243
Query: 326 --VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
V E + ++ +I EPGR L+ N + V K NG K F+++DG+M +LIRP+LY
Sbjct: 244 QSVLETMFGLDITVICEPGRFLVGNCGTFITKVLYEKINGNKRFVIVDGAMNDLIRPALY 303
Query: 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMS 443
+AY IE+++ + E S ++VGPVCES DF K EL + ++ AGAY +
Sbjct: 304 NAYHKIEVLN---DNKEFSDCNLVGPVCESGDFFAKNIELQKTQHNDLVAIYSAGAYGFT 360
Query: 444 MASTYNLKMRPPEYWVRS 461
M+S YN + + E V +
Sbjct: 361 MSSNYNTRGKVAEIAVEN 378
>gi|330812549|ref|YP_004357011.1| diaminopimelate decarboxylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380657|gb|AEA72007.1| diaminopimelate decarboxylase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 415
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 217/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + ALEG+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALEGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 68 LNVLARLGAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 188 LPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRDTAARSYDIVGPICETGDFLAKGRELAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|359440183|ref|ZP_09230107.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20429]
gi|392535086|ref|ZP_10282223.1| diaminopimelate decarboxylase [Pseudoalteromonas arctica A 37-1-2]
gi|358038018|dbj|GAA66356.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20429]
Length = 417
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 218/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVASIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTSDEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
LK++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LKIIGVDCHIGSQLTEVRPFLEALDKLMALIDELKTNGIELTHLDIGGGLGVPYNNEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E L ++L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLANYKHLELIFEPGRAIAANAGILVTQVEFIKQNQDKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRDDETPTHNFDIVGPVCETGDFLGKDRELAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|423700044|ref|ZP_17674534.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Q8r1-96]
gi|387996744|gb|EIK58074.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Q8r1-96]
Length = 415
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 217/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + ALEG+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALEGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 68 LNVLARLGAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 188 LPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRDTAARSYDIVGPICETGDFLAKGRELAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|398837691|ref|ZP_10594983.1| diaminopimelate decarboxylase [Pseudomonas sp. GM102]
gi|398118706|gb|EJM08436.1| diaminopimelate decarboxylase [Pseudomonas sp. GM102]
Length = 415
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+++ +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRNSAARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|398900653|ref|ZP_10649640.1| diaminopimelate decarboxylase [Pseudomonas sp. GM50]
gi|398180482|gb|EJM68060.1| diaminopimelate decarboxylase [Pseudomonas sp. GM50]
Length = 415
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+++ +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRNSAARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|121593140|ref|YP_985036.1| diaminopimelate decarboxylase [Acidovorax sp. JS42]
gi|120605220|gb|ABM40960.1| diaminopimelate decarboxylase [Acidovorax sp. JS42]
Length = 431
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/406 (36%), Positives = 220/406 (54%), Gaps = 9/406 (2%)
Query: 58 THTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN 117
TH H D L E +R+ D+ P Y+YS + + AY++ G
Sbjct: 2 THPVLPGHPHLHYHDQALQLEGLRLADLAREFGT-PLYVYSHAAMLDALGAYQRGFAGRK 60
Query: 118 SIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV 177
I YA+KAN++ +L+ + GCG +VS EL+ + AG DP K IF+G GK ++
Sbjct: 61 VQICYAMKANSSLAVLQLFARHGCGFDIVSAGELQRVIAAGGDPAKVIFSGVGKTRAEMR 120
Query: 178 LAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
A + G+ NV+SE +L+ + ++ G + + +R+NP+VD + HPY++TG K +KFG
Sbjct: 121 QALEVGIGCFNVESEAELDVLSEVAQSMGLRAPISIRVNPNVDAKTHPYISTGLKGNKFG 180
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
I +E+ A P L++VG CH+GS IT+ + DA M++ + I A G V
Sbjct: 181 IAHERTVATYQRAAALPG-LRVVGIDCHIGSQITEESPYLDAMDRMLDLVQAIEAAGIAV 239
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLV 353
+++ GGGLGIDY G P+ L + + +R + L+IEPGRSL+ N +
Sbjct: 240 HHIDFGGGLGIDY--NGDTPPRADALWAKLLAKLDARGYGDRQLMIEPGRSLVGNAGVCL 297
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
V +K KNF ++D +M +L RP++Y AY I + A +DVVGP+CES
Sbjct: 298 TEVLYLKPGEQKNFCIVDAAMNDLPRPAMYQAYHAIVPLQATAPTAVSHVYDVVGPICES 357
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D++G++R L G L V AGAYC SM STYN + RP E V
Sbjct: 358 GDWIGRDRNLAVA-AGDMLAVLSAGAYCSSMGSTYNTRPRPAEVLV 402
>gi|414071098|ref|ZP_11407073.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. Bsw20308]
gi|410806486|gb|EKS12477.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. Bsw20308]
Length = 417
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 218/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVASIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTSDEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
LK++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LKVIGVDCHIGSQLTQVRPFLEALDKLMALIDELKTNGIELTHLDIGGGLGVPYNNEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E L ++L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLANYKHLELIFEPGRAIAANAGILVTQVEFIKQNQDKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRDDETPTHNFDIVGPVCETGDFLGKDRELAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|89901687|ref|YP_524158.1| diaminopimelate decarboxylase [Rhodoferax ferrireducens T118]
gi|89346424|gb|ABD70627.1| diaminopimelate decarboxylase [Rhodoferax ferrireducens T118]
Length = 433
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 227/398 (57%), Gaps = 13/398 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE++R+ D++ P ++YSK + + AY++ G N I YA+KAN +++
Sbjct: 19 LFCEEIRLSDLVRA-HGTPLFVYSKSAMLAALAAYQRGFAGRNVQICYAMKANPALGVIQ 77
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ GCG +VSG ++ L AG K IF+G GK ++ A + G+ NV+SE +
Sbjct: 78 VFAEAGCGFDIVSGGDMDRVLAAGGRAEKIIFSGVGKTRAEMRRALRAGIGCFNVESEAE 137
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAH 252
LE + + G V +R+NP+VDP+ HPY++TG K+SKFG+ +E+ L + AVK
Sbjct: 138 LEVLSEVALSMGVAAPVSIRVNPNVDPKTHPYISTGLKDSKFGVAHERVLPTYQRAVKL- 196
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+++VG CH+GS IT+ + DA M++ ++ I A G + +++ GGGLGIDY+
Sbjct: 197 -AGVRVVGIDCHIGSQITQEGPYLDAVDRMLDLVEAIEAAGIPLHHIDFGGGLGIDYH-- 253
Query: 313 GAVLPKPRNLIDTVRELVLSRNL---NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
G P L + + +R +L+IEPGRSL+ N ++ V +K KNF +
Sbjct: 254 GETPPDAGLLWQKLLARLDARGFGQRHLMIEPGRSLVGNAGVCLSEVLYLKPGEQKNFCI 313
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
ID +M +L RP++Y A+ I ++ P + +DVVGP+CES D++G +R L G
Sbjct: 314 IDAAMNDLPRPAMYQAFHQIVPLNRRPGAPD--TYDVVGPICESGDWIGHDRSLAV-QPG 370
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAYCMSMAS YN + R E V + +I
Sbjct: 371 DLLAVLSAGAYCMSMASNYNSRGRAAEILVDGAQAYVI 408
>gi|302879299|ref|YP_003847863.1| diaminopimelate decarboxylase [Gallionella capsiferriformans ES-2]
gi|302582088|gb|ADL56099.1| diaminopimelate decarboxylase [Gallionella capsiferriformans ES-2]
Length = 417
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 213/387 (55%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + D+ V + P Y+YS+ +T + AL+G +I YA+KAN N IL
Sbjct: 14 LHAEDVSLSDIA-AVHETPCYVYSRAALTEGFREFSDALQGREHLICYAVKANANLAILN 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+LG G +VSG EL+ L AG D K +F+G GK ++ LA G+ NV+S +
Sbjct: 73 VFARLGAGFDIVSGGELQRVLAAGGDARKVVFSGVGKTRAEMRLALDAGILCFNVESAAE 132
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + + GK + LR+NPDVD + HPY++TG K +KFG+ +
Sbjct: 133 LDRLNEVAGSMGKIAAISLRVNPDVDAKTHPYISTGLKQNKFGVAYTEAVALYRKASGLK 192
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L++ G CH+GS +T+ F A ++ +D++ ++G +++L++GGGLGI Y
Sbjct: 193 N-LRITGMDCHIGSQLTETSPFIAAIEKILLLVDELASEGIALEHLDLGGGLGICY--DD 249
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P I + + R LI+EPGR L+ N L+ V +K KNF ++D +
Sbjct: 250 ETPPAIGEYIAALLGALQGRTQKLILEPGRVLVGNAGVLLTRVEYIKPGEEKNFAIVDAA 309
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAE-ISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +L+RP+LYDAY I P ++A + ++VVGP+CE+ DF+G REL L
Sbjct: 310 MNDLMRPALYDAYHGI---LPVVREAHAVQSYEVVGPICETGDFIGHARELAIAPHSL-L 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY MSM+S YN + R E V
Sbjct: 366 AVMSAGAYGMSMSSNYNTRPRAAEVMV 392
>gi|332534419|ref|ZP_08410259.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036153|gb|EGI72628.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 417
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 218/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVASIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTSDEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
LK++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LKVIGVDCHIGSQLTQVRPFLEALDKLMALIDELKTNGIELTHLDIGGGLGVPYDNEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E L ++L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLANYKHLELIFEPGRAIAANAGILVTQVEFIKQNQDKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRDDETPTHNFDIVGPVCETGDFLGKDRELAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|410093898|ref|ZP_11290362.1| diaminopimelate decarboxylase [Pseudomonas viridiflava UASWS0038]
gi|409758681|gb|EKN43956.1| diaminopimelate decarboxylase [Pseudomonas viridiflava UASWS0038]
Length = 415
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL+G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRAYTDALDGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQSVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAS 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T ++ F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVIGVDCHIGSQLTTLEPFIDALDRLLDLVDRLGDCGIHLHHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLVADYIKAVRERLAGRDLGLMFEPGRFIVANAGVLLTRVEYLKHTEQKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL +
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRDGVARPYDIVGPICETGDFLAKGRELVLAEADL 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 -LAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|310823824|ref|YP_003956182.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
gi|309396896|gb|ADO74355.1| Diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
Length = 413
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 212/389 (54%), Gaps = 9/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E V P Y+YS+ +T + + +A +I Y++KAN+ +
Sbjct: 9 GALHAESVPLGAIAEAVGT-PTYVYSQAALTGHFQVLDKAFGESPHLICYSVKANSTLAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L +G G +VSG EL +A D K +F G GK E++ A G+ + NV+S
Sbjct: 68 LGLFAGMGSGFDIVSGGELARVRQARGDMGKTVFAGVGKTQEEMARALAAGILLFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + R AG++ LR+NPDVD + H Y++TG K SKFG+ E + + A K
Sbjct: 128 EELEALDAVGRQAGRRAPFGLRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYARARK 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
++ +G CH+GS +T+ + A + +++AQG ++YL+IGGGLGI Y
Sbjct: 188 M--KGVRALGVDCHIGSQLTRTAPVKAALSKVAGLYAELKAQGHPLEYLDIGGGLGITYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P+ TV E+V LI+EPGRSL+ N L+ V K K F+V+
Sbjct: 246 DE--TPPSPQEYARTVLEVVKGTGARLILEPGRSLVGNAGVLLTRVLYRKQAPAKTFVVV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRP+LY+A H L+ Q + + DVVGPVCES D L + R L P +GA
Sbjct: 304 DAGMNDLIRPALYEA--HHALLPVVKQRGKAVEVDVVGPVCESTDVLARARPLVLPRQGA 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY MSMASTYN + RP E V
Sbjct: 362 LFAVMSAGAYGMSMASTYNSRPRPAEVLV 390
>gi|241664492|ref|YP_002982852.1| diaminopimelate decarboxylase [Ralstonia pickettii 12D]
gi|240866519|gb|ACS64180.1| diaminopimelate decarboxylase [Ralstonia pickettii 12D]
Length = 423
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/393 (37%), Positives = 226/393 (57%), Gaps = 9/393 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L E V + D + P Y+YS+ +T N AY A EG N+ + YA+KAN+N
Sbjct: 11 RQEGALMIEGVAL-DAIAAQFGTPTYVYSRAALTANYRAYAAACEGRNAHVQYAMKANSN 69
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L+ +LG G +VS EL+ L AG K +F+G GK +++ A + GV NV
Sbjct: 70 LAVLQVFAQLGAGFDIVSAGELKRVLAAGAPAAKVVFSGVGKSADEMRFALKVGVACFNV 129
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V LRINPDVD + HPY++TG K +KFG+ +++ A
Sbjct: 130 ESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYRA 189
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT+V + DA +++ + ++ A+G + ++++GGGLGI
Sbjct: 190 AAAMPN-LRVVGIDCHIGSQITEVSPYLDALDKVLDVVTQLDAEGIRLAHIDVGGGLGIT 248
Query: 309 YYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
Y + R L+D V + + ++ EPGRSL+ N L+ V +K +KN
Sbjct: 249 YTDETPPDITAFARTLLDRVEQRGFG-DRTVLFEPGRSLVGNAGLLLTRVEYLKPGASKN 307
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F ++D +M +L RP++Y+AY HI V + Q A + +DVVGPVCES D+LG++R L
Sbjct: 308 FCIVDAAMNDLARPAMYEAYHHIVPVRES-QSAPVV-YDVVGPVCESGDWLGRDRSLAV- 364
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G + + AGAY +M+S YN + R E V
Sbjct: 365 QPGDVVAILSAGAYGFTMSSNYNTRNRAAEVIV 397
>gi|374628651|ref|ZP_09701036.1| diaminopimelate decarboxylase [Methanoplanus limicola DSM 2279]
gi|373906764|gb|EHQ34868.1| diaminopimelate decarboxylase [Methanoplanus limicola DSM 2279]
Length = 431
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 152/398 (38%), Positives = 214/398 (53%), Gaps = 16/398 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL--NSIIGYAIKANNN 129
DG L D+ E+ P Y+ + +I N Y AL+ N + YA KAN N
Sbjct: 11 DGHLMIGSHDCNDLAESY-GTPLYVTDEKRIRENFTRYNSALKKHYNNVRMLYAAKANGN 69
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVD 189
+L+ LG GA + S EL LAL AG +P +FNG+ K EDL LA +GV V+VD
Sbjct: 70 MAVLKTFADLGAGADVFSSGELHLALLAGMNPENLLFNGSSKTKEDLELAVDKGVRVSVD 129
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
S +L + ++ GK V + RINP +D HP +ATG SKFGI +++ LDA
Sbjct: 130 SFDELAQLSEVAKAKGKDVEISFRINPAIDVPTHPKIATGLATSKFGIPADQI---LDAY 186
Query: 250 KA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+A + + VG HCH+GS I +V F AA +MV K+ G ++ +++IGGGLGI
Sbjct: 187 RAALEADNIDPVGMHCHIGSQILEVLPFAKAAEIMVKIAGKLTDIGVKLKFIDIGGGLGI 246
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSR------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y+H P P D V + L L +EPGR+L+ +T L+ V VKT
Sbjct: 247 PYHHDSDNAPTPEEYADAVMPVFLEGIARIGIKPELWVEPGRNLMGDTTILLTGVNSVKT 306
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
K F+ +D L+RP++YD+Y + + + A Q E+ ++ V GP+CES D + +R
Sbjct: 307 -AHKKFVNVDAGFNLLLRPAMYDSYHEVIVANRADQKPEL-EYTVTGPICESGDIIAADR 364
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +RG + V D GAY SMAS YN + R PE V
Sbjct: 365 MLPHVERGDLIAVLDCGAYGYSMASQYNCRPRCPEIMV 402
>gi|389682338|ref|ZP_10173680.1| diaminopimelate decarboxylase [Pseudomonas chlororaphis O6]
gi|388553781|gb|EIM17032.1| diaminopimelate decarboxylase [Pseudomonas chlororaphis O6]
Length = 415
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGQLFAEGVALSAIAERF-GTPTYVYSRAHIEAQYHAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGAADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 SDELERLQQVAAELNVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLAPFIDALDRLLDLVDRLGECGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYVKAVRERLDGRDLELVFEPGRFIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P++ + +D+VGP+CE+ DFL KER+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVSAVR--PRNGQARTYDIVGPICETGDFLAKERQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|386284969|ref|ZP_10062188.1| diaminopimelate decarboxylase [Sulfurovum sp. AR]
gi|385344372|gb|EIF51089.1| diaminopimelate decarboxylase [Sulfurovum sp. AR]
Length = 403
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 213/366 (58%), Gaps = 9/366 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y I K A G S+I YA+KAN+N ++ HL KLG GA VS E++
Sbjct: 15 PLYMYDFDYIENRYTTLKDAFAGKKSLINYAVKANSNLSVIAHLAKLGAGADCVSIGEVK 74
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL AG D K IF+G GK +++ A ++ + +N++SE +++ + + ++ GK+ +
Sbjct: 75 RALTAGVDKYKIIFSGVGKRDDEIREALEQDILLLNLESEAEMKRVEMVAKELGKEARIS 134
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE-LKLVGAHCHLGSTIT 270
+R+NP++DPQ HPY++TG +KFG+ + + + A+ +E L VG H H+GS +T
Sbjct: 135 IRVNPNIDPQTHPYISTGLHENKFGVEIDMAKRMY--IYANKSEFLNPVGIHFHIGSQLT 192
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
K++ R++ +++ + + ++A ++ + ++GGG+G+ Y +P + E
Sbjct: 193 KIEPIRESCMIVADLVRSLKAIKIDIKFFDVGGGIGV-VYDDEVTIP-AEVYTQAIFEAT 250
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
++ L+ EPGR ++AN V K N K F+++DG+M +LIRPSLY+AY IE
Sbjct: 251 KGLDVTLLCEPGRYMVANAGAFFTKVLYEKVNDGKRFVIVDGAMNDLIRPSLYNAYHKIE 310
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
V ++ E + DVVGPVCES DF GK LP + +VVH AGAY +MAS YN
Sbjct: 311 AVL---KEGEKTPADVVGPVCESGDFFGKNVPLPPLEHNDLIVVHSAGAYGFTMASNYNT 367
Query: 451 KMRPPE 456
+ + E
Sbjct: 368 RAKAAE 373
>gi|115372602|ref|ZP_01459909.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
gi|115370323|gb|EAU69251.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
Length = 457
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 212/389 (54%), Gaps = 9/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E V P Y+YS+ +T + + +A +I Y++KAN+ +
Sbjct: 53 GALHAESVPLGAIAEAVGT-PTYVYSQAALTGHFQVLDKAFGESPHLICYSVKANSTLAV 111
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L +G G +VSG EL +A D K +F G GK E++ A G+ + NV+S
Sbjct: 112 LGLFAGMGSGFDIVSGGELARVRQARGDMGKTVFAGVGKTQEEMARALAAGILLFNVESA 171
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + R AG++ LR+NPDVD + H Y++TG K SKFG+ E + + A K
Sbjct: 172 EELEALDAVGRQAGRRAPFGLRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYARARK 231
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
++ +G CH+GS +T+ + A + +++AQG ++YL+IGGGLGI Y
Sbjct: 232 M--KGVRALGVDCHIGSQLTRTAPVKAALSKVAGLYAELKAQGHPLEYLDIGGGLGITYA 289
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P+ TV E+V LI+EPGRSL+ N L+ V K K F+V+
Sbjct: 290 DE--TPPSPQEYARTVLEVVKGTGARLILEPGRSLVGNAGVLLTRVLYRKQAPAKTFVVV 347
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRP+LY+A H L+ Q + + DVVGPVCES D L + R L P +GA
Sbjct: 348 DAGMNDLIRPALYEA--HHALLPVVKQRGKAVEVDVVGPVCESTDVLARARPLVLPRQGA 405
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY MSMASTYN + RP E V
Sbjct: 406 LFAVMSAGAYGMSMASTYNSRPRPAEVLV 434
>gi|398869280|ref|ZP_10624657.1| diaminopimelate decarboxylase [Pseudomonas sp. GM78]
gi|398230800|gb|EJN16808.1| diaminopimelate decarboxylase [Pseudomonas sp. GM78]
Length = 415
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALVGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL KEREL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRTTAAR--PYDIVGPICETGDFLAKERELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|388466728|ref|ZP_10140938.1| diaminopimelate decarboxylase [Pseudomonas synxantha BG33R]
gi|388010308|gb|EIK71495.1| diaminopimelate decarboxylase [Pseudomonas synxantha BG33R]
Length = 415
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I ++ AL+G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRSFTDALDGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L ++G G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARMGAGFDIVSRGELERVLAAGGQAEKIVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEEVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFLDALDRLLALIDRLGECGIYLQHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLISDYIQAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V+ P+ +E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVT--PRASEARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|367474065|ref|ZP_09473597.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 285]
gi|365273637|emb|CCD86065.1| diaminopimelate decarboxylase [Bradyrhizobium sp. ORS 285]
Length = 446
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 212/399 (53%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + D+ + PFY YS + R+ + A G + +I YA+KAN+N
Sbjct: 33 DGVLHAEAVNLADLAAQIGT-PFYCYSTATLERHYRVFADAFAGQDVLICYAMKANSNQS 91
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L K G GA +VSG EL+ AL AG K +F+G GK +L A + +N++S
Sbjct: 92 VLRTLAKCGAGADVVSGGELKRALAAGIPSRKIVFSGVGKTEAELRAALAADIHCLNIES 151
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G + +R+NPDVD H ++TG +KFGI + +
Sbjct: 152 EPELDLLARLAVETGHTARISIRVNPDVDAGTHAKISTGKSENKFGIPLDHARRVYARAA 211
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT + A ++ ++ +RA G ++ +++ GGGLGI Y+
Sbjct: 212 KMPG-IKVTGVDVHIGSQITDLGPMETAFRILAEFVQTLRADGHDISHVDFGGGLGIPYH 270
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
AV P+P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 271 MDRAVPPEPAAYAAMVKRISHNLGCTLMFEPGRMIVGNAGILVARVIYVKHGEAKNFVII 330
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V A + DVVGPVCES D+L +R LP P G
Sbjct: 331 DAAMNDLIRPTLYEAHHDILPVKQAAPNTPAFVADVVGPVCESGDYLALDRALPEPAPGD 390
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY A TYN + PE V+ S +I P
Sbjct: 391 LLAIMTAGAYGAVQACTYNTRALVPEVLVKGNQSAVIRP 429
>gi|332529506|ref|ZP_08405464.1| diaminopimelate decarboxylase [Hylemonella gracilis ATCC 19624]
gi|332041026|gb|EGI77394.1| diaminopimelate decarboxylase [Hylemonella gracilis ATCC 19624]
Length = 440
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/407 (37%), Positives = 227/407 (55%), Gaps = 19/407 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL----NSIIGYAIKANNNY 130
L+ E VR+ D+ T P ++YS+ + + AY++ L + I YA+KAN++
Sbjct: 23 LHLEGVRLADLART-HGTPLFVYSQQAMLDALAAYQRGLASRLAQGKARICYALKANSSL 81
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGVFV-- 186
IL+ + GCG +VSG EL L AG DP + IF+G GK ++ L A +G +
Sbjct: 82 AILQLFARAGCGFDIVSGGELERVLAAGGDPARVIFSGVGKTRAEMRQALNAGQGAGIGC 141
Query: 187 -NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + GK V +R+NPDVD + HPY++TG K +KFGI +E+
Sbjct: 142 FNVESEAELDVLNEVATALGKVAPVSIRVNPDVDAKTHPYISTGLKGNKFGIAHERAVAV 201
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
P LK+VG CH+GS IT+ + DA +++ ++ I A G + ++++GGGL
Sbjct: 202 YQHAARLPG-LKVVGIDCHIGSQITEERPYLDALERVLDLVEAIEAAGIPLHHIDLGGGL 260
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GIDY+ G P L + V +R + + IEPGRSL+ N + V +K
Sbjct: 261 GIDYH--GDTPPAADALWHKLLARVDARGHADKAIFIEPGRSLVGNAGVCLTEVLYLKPG 318
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSP--APQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +L RP++Y+AY I ++P Q ++VVGP+CES D+LG +
Sbjct: 319 EQKNFCIVDAAMNDLPRPAMYEAYHQIVPLAPREPAQAGGAVNYEVVGPICESGDWLGHD 378
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
R L G L V AGAYCMSMAS YN + R E V+ +I+I
Sbjct: 379 RALSV-QAGDQLAVLSAGAYCMSMASNYNTRGRAAEVLVQGDQAILI 424
>gi|398881564|ref|ZP_10636553.1| diaminopimelate decarboxylase [Pseudomonas sp. GM60]
gi|398201203|gb|EJM88090.1| diaminopimelate decarboxylase [Pseudomonas sp. GM60]
Length = 415
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSTIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRATAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|149926604|ref|ZP_01914864.1| diaminopimelate decarboxylase [Limnobacter sp. MED105]
gi|149824533|gb|EDM83749.1| diaminopimelate decarboxylase [Limnobacter sp. MED105]
Length = 435
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 222/402 (55%), Gaps = 17/402 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSI-IGYA 123
H KA G L E+ + + + P Y+YS I AY A +GL + I YA
Sbjct: 14 HLQFDKASGELQFENTELSGLAQEF-GTPLYVYSASSIKAAYRAYASACQGLAHVTICYA 72
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN+N IL+ L + G G +VS EL + AG P K +F G GK ++++ A +G
Sbjct: 73 VKANSNIHILKLLAQEGAGFDIVSAGELARVIAAGGAPEKAVFAGVGKSMQEIEYALGQG 132
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
V NV+SE ++E + + + +K NV LR+NPDVD + HPY++TG K +KFG+
Sbjct: 133 VGCFNVESEAEMERVALVAEKLQRKANVSLRVNPDVDAKTHPYISTGLKENKFGVSMNAA 192
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ AHP L + G CH+GS +T + DA ++ +D++ A+G E+++L++G
Sbjct: 193 KRVYQFANAHP-WLNVHGIDCHIGSQLTDASPYFDALDRVLALLDQLSAEGIEINHLDLG 251
Query: 303 GGLGIDYYHT-----GAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVN 354
GG+GI Y VLPK LI V+ ++ + L EPGRS++ N L+
Sbjct: 252 GGIGIRYLDETPPTPAEVLPK---LIAKVQSWAQAKGRSMPTLSFEPGRSIVGNAGVLLT 308
Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
V +K N K+F ++D +M +L+RP++Y A+ + V P A ++DVVGPVCES
Sbjct: 309 QVEFLKENEGKHFAIVDAAMNDLMRPAMYKAFHGVVAVQNNPH-AAAQEYDVVGPVCESG 367
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
D+L K R L ++G L + AGAY +MAS YN + R E
Sbjct: 368 DWLAKNRTLAI-EQGDYLAILSAGAYGQTMASNYNSRGRAAE 408
>gi|372467160|pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
gi|372467161|pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 225/404 (55%), Gaps = 5/404 (1%)
Query: 54 AKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL 113
A++Q + V H F + +G L+ E+V + ++ + V PFY+YS+ I R+ + A
Sbjct: 14 AQTQGPGSMVNH-FEYR-NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAF 70
Query: 114 EGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLL 173
+++++ YA+ AN+N +L L KLG GA VS E+R AL AG + +F+G GK
Sbjct: 71 ADMDTLVTYALXANSNQAVLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTP 130
Query: 174 EDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232
++ A + G++ NV+SE +LE + + AGK V LRINPDVD + H ++TG
Sbjct: 131 REMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSE 190
Query: 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
+KFGI +K + + P L +VG H+GS I ++ F +A LM + +++A
Sbjct: 191 NKFGIPRDKARAAYARAASLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 249
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCL 352
G + ++++GGGLGI Y P P V + + L + EPGR ++ N L
Sbjct: 250 GHNIRHVDVGGGLGIPYRTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLL 309
Query: 353 VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCE 412
V V VK KNF+++D +M +LIRP+LYDA+ I V +A + D VGPVCE
Sbjct: 310 VTEVIFVKEGDAKNFVIVDAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCE 369
Query: 413 SADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+ D+LG +RE+ P G + + GAY ++STYN ++ PE
Sbjct: 370 TGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPE 413
>gi|451941266|ref|YP_007461904.1| diaminopimelate decarboxylase [Bartonella australis Aust/NH1]
gi|451900653|gb|AGF75116.1| diaminopimelate decarboxylase [Bartonella australis Aust/NH1]
Length = 423
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 222/409 (54%), Gaps = 11/409 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H FS G L+ E+ + + + VE PFY YS + ++ Y+ A + ++I YA+
Sbjct: 2 HFFSYH-QGILHAENFSLSTLAQNVET-PFYCYSASALIARLKDYQDAFREMPNLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L G GA +VS ELR AL G + +++G GK+++++ A +
Sbjct: 60 KANSNQAVLRLLAANGAGADVVSEGELRRALAVGIPAHRIVYSGVGKMVKEIDFALAHDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
F NV+SE +LE + + K + LRINPD+D + H + TG +KFGI
Sbjct: 120 FCFNVESEPELEQLSARAVALSKTARISLRINPDIDAKTHKKITTGKSENKFGIPLSS-A 178
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
W + A L++ G H+GS I + F DA + N++ ++R+ G + +++IGG
Sbjct: 179 WSVYEKAAQLPGLRVCGVDMHIGSQICDLRPFEDAFSIAANFVHQLRSGGHNITHVDIGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y + +P P + V++ + +++IIEPGRS+ L+ V VK
Sbjct: 239 GLGISYGNEQHSIPSPFDYAALVKKYIAPLGVDIIIEPGRSIAGEAGALITSVVYVKKGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQH---IELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
+NF+++D +M + +RP+LYDA+Q ++ +S P + D+VGPVCE+ D+LG
Sbjct: 299 GRNFVIVDAAMNDFLRPTLYDAWQDVIPVKQISMVP----LMNADIVGPVCETGDYLGLN 354
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R LP G L + AGAY MASTYN + PE V++ +I P
Sbjct: 355 RSLPMLAAGDLLAIMGAGAYGAVMASTYNSRPLVPEILVKNAHYSVIRP 403
>gi|240851353|ref|YP_002972756.1| diaminopimelate decarboxylase [Bartonella grahamii as4aup]
gi|240268476|gb|ACS52064.1| diaminopimelate decarboxylase [Bartonella grahamii as4aup]
Length = 424
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/404 (33%), Positives = 223/404 (55%), Gaps = 3/404 (0%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ E + + + V PFY YS + + YK+A +G+ S++ YA+KA
Sbjct: 3 FFSYHQGMLHAEGCSLAVLAQEV-GTPFYCYSANALVTRFKDYKKAFQGMPSLLAYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L G GA +VS ELR AL G + +++G GK + ++ A + ++
Sbjct: 62 NSNQAVLRLLANNGAGADVVSEGELRRALAVGIPAHRIVYSGVGKTMREIDFALAQDIYC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + K V LRINPDVD + H + TG +KFGI +
Sbjct: 122 FNVESEPELEQLSQRAVALSKIARVSLRINPDVDAKTHKKITTGKSENKFGIPLLLAREA 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ P L++ G H+GS I + F +A L+ + + ++ + G+ + +++IGGGL
Sbjct: 182 YKKADSLPG-LQVCGIDMHIGSQICDLKPFEEAFFLIADCVRQLWSDGYAITHIDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y +P P + V++ + +N+++EPGRS++ L+ V +K +
Sbjct: 241 GIAYGCEQHTVPSPFDYAALVKKYIAPLGINIVVEPGRSIVGQAGVLMTSVLYLKRGQGR 300
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF+++D +M +L+RP+LYDA+Q++ LV A +DA + + D+VG VCE+ D+L +R LP
Sbjct: 301 NFVIVDAAMNDLMRPTLYDAWQNVVLVKKAAKDAPLIRADIVGSVCETGDYLALDRCLPI 360
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY MASTYN ++ PE V+ ++ P
Sbjct: 361 LAPGDLLAITQAGAYGAVMASTYNSRLLVPEVLVQDTCYAVVRP 404
>gi|152990136|ref|YP_001355858.1| diaminopimelate decarboxylase [Nitratiruptor sp. SB155-2]
gi|151421997|dbj|BAF69501.1| diaminopimelate decarboxylase [Nitratiruptor sp. SB155-2]
Length = 400
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 213/370 (57%), Gaps = 7/370 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y ++ +N EA K+A + SII YA+KAN+N +L+HL +LG GA VS E++
Sbjct: 13 PLYVYDFNEVAKNYEAIKEAFKARKSIIAYAVKANSNMSLLKHLAELGSGADCVSIGEVK 72
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL AG K IF+G GK +++ A + + ++N++SE + + ++ GK V
Sbjct: 73 RALLAGIPNYKIIFSGVGKRDDEIEEALLKDILYINIESEAETYRVEEIAKKLGKVARVS 132
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
R+NP++DP+ HPY++TG +KFG+ E + K P + V H H+GS +T+
Sbjct: 133 FRVNPNIDPKTHPYISTGLHENKFGVEIETAKKLYLYAKNSPF-INPVAIHFHIGSQLTE 191
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ ++A+ ++ + + ++ ++ + ++GGGLGI Y + +P + + +
Sbjct: 192 LEPIKEASAIVADLVRSLQKLDIDIKFFDVGGGLGIRYKDEKTI--EPYDYAQAILSTLR 249
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
++ ++ EPGR ++ N + V K + K F+++DG+M +L+RPSLY+AY +E+
Sbjct: 250 GTDMTIVCEPGRYIVGNAGVFLTKVLYEKQSDKKRFVIVDGAMNDLLRPSLYNAYHEVEV 309
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
V + + S DVVGPVCES DFL K R LP G +VV AGAY MAS YN +
Sbjct: 310 VGKSGNE---SLADVVGPVCESGDFLAKNRMLPPTKHGDVIVVKSAGAYGFVMASNYNTR 366
Query: 452 MRPPEYWVRS 461
RP E + +
Sbjct: 367 PRPAEVAIEN 376
>gi|359454039|ref|ZP_09243334.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20495]
gi|358048990|dbj|GAA79583.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20495]
Length = 417
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 217/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVASIAQQY-GTPCYVYSRATFERHYLAFANATTNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTSDEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
LK++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LKVIGVDCHIGSQLTQVRPFLEALDKLMALIDELKTNGIELTHLDIGGGLGVPYNNEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E L ++L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLANYKHLELIFEPGRAIAANAGILVTQVEFIKQNQDKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRNDETPTHNFDIVGPVCETGDFLGKDRELAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|423694251|ref|ZP_17668771.1| diaminopimelate decarboxylase [Pseudomonas fluorescens SS101]
gi|388002517|gb|EIK63846.1| diaminopimelate decarboxylase [Pseudomonas fluorescens SS101]
Length = 415
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I ++ AL+G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRSFTDALDGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKIVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFLDALDRLLALIDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIQAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V+ P+ +E +D+VGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVT--PRTSEARAYDIVGPICETGDFLAKDRELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|398878212|ref|ZP_10633337.1| diaminopimelate decarboxylase [Pseudomonas sp. GM67]
gi|398200469|gb|EJM87380.1| diaminopimelate decarboxylase [Pseudomonas sp. GM67]
Length = 415
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQIVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRATAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|322513198|ref|ZP_08066326.1| diaminopimelate decarboxylase [Actinobacillus ureae ATCC 25976]
gi|322121029|gb|EFX92862.1| diaminopimelate decarboxylase [Actinobacillus ureae ATCC 25976]
Length = 416
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 233/396 (58%), Gaps = 10/396 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQY-GTPAYIYSRATLERHWHAFDKAFGSHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG DP+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGDPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L I + GK + LR+NPDVD HPY++TG K +KFG+ N+ + +L A K+
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNQAREVYLLA-KSL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN +K+ G CH+GS +T++ F DA ++ +D+++ G E+ +L++GGGLG+ Y
Sbjct: 189 PN-VKITGMDCHIGSQLTELQPFLDATDRLIVLMDQLKEDGIELHHLDLGGGLGVPY--N 245
Query: 313 GAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
G P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 246 GEEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVD 305
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK REL ++G
Sbjct: 306 TGMNDMIRPALYEAYMQITEVDQSLV-REKTVYDVVGPICETSDFLGKGRELAI-EQGDL 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ + AGAY +M+STYN + + E V S ++ +I
Sbjct: 364 IAMRSAGAYGAAMSSTYNSRPQAVEIMVDSDLAHLI 399
>gi|365540296|ref|ZP_09365471.1| diaminopimelate decarboxylase [Vibrio ordalii ATCC 33509]
Length = 417
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 226/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + ++ E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVALTELAEQY-GTPLYVYSRATLERHWHAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSAGELERVVVAGGDPAKVVFSGVGKTEAEMKRALELKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD Q HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELARLNKVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRALDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ N L + G CH+GS +T + F DA ++ ID+++ +G + +L++GGGL
Sbjct: 183 YRLAQSLEN-LSIHGIDCHIGSQLTAIAPFIDATDRLLALIDQLKEEGITIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVY--RDELPPQPSDYAKALLARLSNHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGPVCE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVVPRQGEALTYDLVGPVCETGDFLGKDRSL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G L V AGAY M+S YN + R E V
Sbjct: 357 VLDEGDLLAVRSAGAYGFVMSSNYNTRTRVAEVMV 391
>gi|83721058|ref|YP_443535.1| diaminopimelate decarboxylase [Burkholderia thailandensis E264]
gi|167620699|ref|ZP_02389330.1| diaminopimelate decarboxylase [Burkholderia thailandensis Bt4]
gi|257137679|ref|ZP_05585941.1| diaminopimelate decarboxylase [Burkholderia thailandensis E264]
gi|83654883|gb|ABC38946.1| diaminopimelate decarboxylase [Burkholderia thailandensis E264]
Length = 423
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 227/404 (56%), Gaps = 14/404 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V D+ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVCTADLAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRAQNVVFSGVGKSADEMRIALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVEQIEADGVKIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P + V E + +R + + EPGRSL N L+ V +K K
Sbjct: 246 Y--DDETPPDIGAYVRAVLERIDARGHGHREIWFEPGRSLTGNAGILLTRVEFLKQGEEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y A+ IE V+P D + +DVVGPVCES D+LG++R L
Sbjct: 304 NFAIVDAAMNDLARPAMYQAFHAIEPVTPR-TDVAAAVYDVVGPVCESGDWLGRDRSLAI 362
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 363 AP-GDLLAIRSAGAYGFTMSSNYNARPRAAEVIVDGASAYLVRP 405
>gi|323135718|ref|ZP_08070801.1| diaminopimelate decarboxylase [Methylocystis sp. ATCC 49242]
gi|322398809|gb|EFY01328.1| diaminopimelate decarboxylase [Methylocystis sp. ATCC 49242]
Length = 421
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 156/411 (37%), Positives = 226/411 (54%), Gaps = 14/411 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV V + + V PFY YS I R+ + QA +GL++++ YA+
Sbjct: 2 HHFDYR-DGALHAEDVAVSAIADCV-GTPFYCYSAATIRRHFRVFAQAFDGLDAMVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L K G G +VSG EL AL AG + ++G GK E++ A +
Sbjct: 60 KANSNQAVLRLLAKEGAGMDVVSGGELARALAAGAPGGRITYSGVGKTEEEIAAALDADI 119
Query: 185 F-VNVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEK 241
F NV+SE +LE I VA+R+ GK V LR+NPDVD + H ++TG +KFG+ +
Sbjct: 120 FCFNVESEPELEAISRVATRM-GKVARVSLRVNPDVDARTHKKISTGKAENKFGVPLSHA 178
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
+ + A K + + GA H+GS +T ++ F +A L+ + +RA G + ++++
Sbjct: 179 REVYARAAKF--RGVDITGADMHIGSQLTDLEPFDEAFSLLAELVVDLRADGHHISHVDL 236
Query: 302 GGGLGIDYYHTGAVLPK---PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
GGGLGI YH G P+ P VR+ N L++EPGR ++ N LV V
Sbjct: 237 GGGLGIP-YHEGDD-PQSYHPERYAAIVRKHFAGLNCKLVLEPGRLIVGNAGVLVTRVIY 294
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
VK K F+++D M +L+RP+LYDA+ I V A EI+ DVVGPVCE+ D+L
Sbjct: 295 VKHGEAKTFVIVDAGMNDLVRPTLYDAHHDIIPVRAAADREEITA-DVVGPVCETGDYLA 353
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+R++P G L V AGAY A TYN + PE V +I P
Sbjct: 354 LDRKMPEARPGELLAVLTAGAYGAVQAGTYNTRPLIPEVLVDGERFAVIRP 404
>gi|398862192|ref|ZP_10617804.1| diaminopimelate decarboxylase [Pseudomonas sp. GM79]
gi|398231162|gb|EJN17158.1| diaminopimelate decarboxylase [Pseudomonas sp. GM79]
Length = 415
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 218/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGVPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGTADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+++ +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVR--PRNSAARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|152977874|ref|YP_001343503.1| diaminopimelate decarboxylase [Actinobacillus succinogenes 130Z]
gi|150839597|gb|ABR73568.1| diaminopimelate decarboxylase [Actinobacillus succinogenes 130Z]
Length = 415
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 222/387 (57%), Gaps = 9/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED + + E P Y+YSK + R+ A+ A +I +A+K+N+N +L+
Sbjct: 11 LYAEDCEITQLAEQF-GTPLYVYSKATLERHWHAFDDAFGDYPHLICFAVKSNSNIAVLQ 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ +LG G +VS EL L AG DP K +F+G K ++ A + G+ NV+S +
Sbjct: 70 TMARLGSGFDIVSQGELERVLAAGGDPGKVVFSGVAKTETEITRALEVGIRCFNVESIPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LYRINEVAGKLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDQAREVYRRAAELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ + + G CH+GS +T++ F DAA +V +++++ G ++ +L++GGGLG+ Y +
Sbjct: 190 H-IAVTGMDCHIGSQLTELQPFLDAADRLVVLMEQLKQDGVQLKHLDLGGGLGVTY--SN 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P + + + + + NL +I+EPGR++ AN LV V +K+N T NF ++D
Sbjct: 247 ETPPHPTDYATALLQKLQAYNLEIILEPGRAICANAGVLVTKVEYLKSNETHNFAIVDAG 306
Query: 374 MAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY + IE P+ + +DVVGP+CE++DFLGK+REL G L
Sbjct: 307 MNDMIRPALYEAYMNIIEADRTLPRAKAV--YDVVGPICETSDFLGKKRELAIA-AGDYL 363
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY SM+S YN + R E V
Sbjct: 364 VQRSAGAYGASMSSNYNSRPRTAEVMV 390
>gi|52426139|ref|YP_089276.1| LysA protein [Mannheimia succiniciproducens MBEL55E]
gi|52308191|gb|AAU38691.1| LysA protein [Mannheimia succiniciproducens MBEL55E]
Length = 416
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 225/385 (58%), Gaps = 8/385 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ V ++ E P Y+YS+ + R+ +A+ AL ++ +A+K+
Sbjct: 3 FFQYKNNKLYAEDLLVSELAEQF-GTPLYIYSRATLERHWKAFDSALGDHPHLVCFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N N IL+ + KLG G +VS EL + AG DP K +F+G K +++ A + +
Sbjct: 62 NPNIAILQVMAKLGAGFDIVSQGELERVIAAGGDPHKVVFSGVAKNEKEIARALELDIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L+ I + +GK + LR+NPDVD HPY++TG K +KFG+ ++ +
Sbjct: 122 FNVESLAELQRINEVAGKSGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ ++++R G E+++L++GGGL
Sbjct: 182 YRLASRLPN-IKVTGMDCHIGSQLTEIQPFLDATDRLILLLEQLREDGIELEHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P P + +L NL +I+EPGR++ AN+ LV V +K+N T
Sbjct: 241 GVTY--SDETPPHPSEYATALLNKLKQYTNLEIIMEPGRAISANSGILVTKVEYLKSNET 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF ++D M ++IRP+LY AY +I + + + E +DVVGP+CE++DFLGK+R L
Sbjct: 299 HNFAIVDAGMNDMIRPALYQAYMNI-IEADRTLNRESKIYDVVGPICETSDFLGKQRRLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYN 449
G LV AGAY SM+STYN
Sbjct: 358 IAP-GDYLVQRSAGAYGASMSSTYN 381
>gi|224373130|ref|YP_002607502.1| diaminopimelate decarboxylase [Nautilia profundicola AmH]
gi|223589760|gb|ACM93496.1| diaminopimelate decarboxylase [Nautilia profundicola AmH]
Length = 400
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 215/370 (58%), Gaps = 6/370 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y K A +G SII YA+KAN+N +++ LG GA VS E++
Sbjct: 13 PLYVYDFHHFENQFNELKNAFKGRKSIISYAVKANSNLSVIKKFATLGSGADCVSIGEVK 72
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AG D K IF+G GK +++ A + + +NV+SE +L + + G +
Sbjct: 73 RALMAGVDRYKVIFSGVGKRDDEIEEALKLDILMINVESEAELNRVADIAEKLGVVARIS 132
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP++DP+ HPY++TG +KFG+ + + K + + L VG H H+GS +T+
Sbjct: 133 IRVNPNIDPKTHPYISTGLHENKFGVDIDTAKKMYLFAKNNSS-LNPVGIHFHIGSQLTE 191
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ ++A+ ++ + + ++A ++ + ++GGGLGI Y + KP + + +
Sbjct: 192 LEPIKEASQIVADLVRSLKAINIDIKFFDVGGGLGIKYKDEETI--KPYDYAQAILSTLS 249
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
++ ++ EPGR L+ N + V K NG K F+++DG+M +LIRPSLY+AY IE+
Sbjct: 250 GLDVTIVCEPGRFLVGNGGWFLTSVLYEKVNGDKRFVIVDGAMNDLIRPSLYNAYHKIEV 309
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
++ ++ EISK ++VGP+CES DF K+ ELP+ + G +V+H AGAY +M+S YN +
Sbjct: 310 ITD--KNGEISKANLVGPICESGDFFAKDIELPSTNHGDLVVIHSAGAYGFTMSSNYNTR 367
Query: 452 MRPPEYWVRS 461
R E V +
Sbjct: 368 PRAAEIAVEN 377
>gi|218778271|ref|YP_002429589.1| diaminopimelate decarboxylase [Desulfatibacillum alkenivorans
AK-01]
gi|218759655|gb|ACL02121.1| diaminopimelate decarboxylase [Desulfatibacillum alkenivorans
AK-01]
Length = 417
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 224/390 (57%), Gaps = 11/390 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCEDV V D+ + P ++YS +TR+ +A+ +A ++ II Y+ KAN N IL+
Sbjct: 11 LYCEDVPVADIAANL-GTPLFIYSHATLTRHFQAFDKAFGDVDHIICYSAKANTNGAILK 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
+G G +VSG EL L+AG K + G GK +++ LA G+ + NV+S +
Sbjct: 70 MFADMGTGLDVVSGGELHRGLKAGIPANKIAYAGVGKTQDEIDLALNSGILMFNVESFEE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-- 251
L+ I ++ GKK + LR+NP+VD + HPY++TG K +KFGI E + ++A KA
Sbjct: 130 LQAINARAKALGKKAPISLRVNPNVDAKTHPYISTGMKKNKFGIAKEAV---VEAYKAAH 186
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
+ ++VG H+GS IT+V F +A + + +++ G ++YL++GGGLGI+Y
Sbjct: 187 ELDSTEVVGIDFHIGSQITQVGPFVEAMESVKSLAAELKGMGIGINYLDVGGGLGINYDD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P+P + +++ + +++EPGR+++ N +V +K TKNFI++D
Sbjct: 247 E--EPPEPDEYAKAICKVIADFPITVVLEPGRAMVGNAGIMVTRFLYLKEGATKNFIIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M +LIRPS+Y A+ I+ V+ D DVVGP+CES DFL K+RE+ G
Sbjct: 305 AGMNDLIRPSIYGAFHLIQPVNKREGDPLTG--DVVGPICESTDFLAKDREIGAVVPGDL 362
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY +M+S YN + R E V+
Sbjct: 363 LAVMSAGAYGFAMSSNYNSRPRACEVMVKG 392
>gi|451812554|ref|YP_007449008.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778456|gb|AGF49404.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 420
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 154/400 (38%), Positives = 231/400 (57%), Gaps = 13/400 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K + L+ E++ V ++E + P Y+YSK I ++Y QA++ N ++ Y +
Sbjct: 4 HNFKFK-NNLLFVENISVPSIIEKL-GTPLYIYSKKAILEAWDSYYQAIKNRNCLVCYGM 61
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L+ KLG G +VSG EL L DP K +F+G GK ++ A + G+
Sbjct: 62 KANSNLAVLKEFSKLGSGFDIVSGGELERVLAIKADPKKVVFSGVGKQSWEIEKAIKAGI 121
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKL 242
NV+SE +L NI ++ G + LR+NPDVD HPY++TG K +KFGI N
Sbjct: 122 KCFNVESEAELHNISRIAKHFGLVAPISLRVNPDVDANTHPYISTGLKENKFGISINTAF 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ A K PN + +VG CH+GS +T++ F D+ ++ I+KI G ++ +++IG
Sbjct: 182 DCYQVASKL-PN-IDIVGIDCHIGSQLTEIKPFIDSLEKIILLINKINTYGIQIKHIDIG 239
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRN---LNLIIEPGRSLIANTCCLVNHVTGV 359
GG+GI Y + PK LID V + + N L +I+EPGRSLI N LV V +
Sbjct: 240 GGIGIQYKEESCISPKE--LIDKVFDKLEDNNLEHLQVILEPGRSLIGNAGILVTKVQYL 297
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K + +NF ++D +M +LIRP+LY +Y E+V+ ++ ++DVVGP+CES+D+L K
Sbjct: 298 KESEDRNFAIVDAAMNDLIRPALYHSYH--EIVTVVERNVAKKEYDVVGPICESSDWLAK 355
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L G L + GAYCM+MAS YN + R E V
Sbjct: 356 NRLLNELQEGELLAIESIGAYCMTMASNYNTRGRAAEIMV 395
>gi|145588275|ref|YP_001154872.1| diaminopimelate decarboxylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046681|gb|ABP33308.1| diaminopimelate decarboxylase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 432
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/402 (37%), Positives = 234/402 (58%), Gaps = 18/402 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL---EG-LNSIIGY 122
FS++ +G Y ED+ + D+ P Y+YSK +++ +AY +A +G + I Y
Sbjct: 14 FSER-NGNWYAEDIALADLAREF-GTPLYVYSKSALSKAYQAYDKACVDKQGKRRARIHY 71
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+KAN+N ++ ++LG G LVSG EL AL G DP +F G GK +++ A +
Sbjct: 72 AMKANSNLAVINCFKELGAGFDLVSGGELARALAIGADPKSLVFAGVGKSAKEIAEALKA 131
Query: 183 GV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NE 240
GV +NV+S +L I + G + + LR+NPDVD Q HPY++TG K +KFGI +E
Sbjct: 132 GVKCINVESIAELHKINRVATELGLRAPISLRVNPDVDAQTHPYISTGLKGNKFGIAYHE 191
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L+ + +A + ++ +VG CH+GS IT + DA +++ + +++ +G + +L+
Sbjct: 192 VLKTYREA--SQLAQIDVVGIDCHIGSQITTTAPYLDALDKVLDLVAQLKKEGIVIHHLD 249
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVT 357
+GGGLGI Y + P + DT+ V R +L++++EPGRSL+ N L+ V
Sbjct: 250 LGGGLGISY--SDETPPDITDFTDTLLNRVAERGFGHLDVVLEPGRSLVGNAGVLLTTVE 307
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFL 417
+K KNF ++D +M EL+RP+LY+A+ I V + A+ +DVVGPVCES D+L
Sbjct: 308 YLKPGAEKNFCIVDAAMTELMRPALYEAHHGI--VPVQAKQAKALTYDVVGPVCESGDWL 365
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G++R L + G L + AGAY MAS YN + +P E V
Sbjct: 366 GRDRHLAV-EEGDLLAILSAGAYGFVMASNYNTRPKPAEIIV 406
>gi|336122724|ref|YP_004564772.1| Diaminopimelate decarboxylase [Vibrio anguillarum 775]
gi|335340447|gb|AEH31730.1| Diaminopimelate decarboxylase [Vibrio anguillarum 775]
Length = 417
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 226/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E+V + ++ E P Y+YS+ + R+ A+ +++ ++ YA+KA
Sbjct: 4 FNYQDDGQLWAENVALTELAEQY-GTPLYVYSRATLERHWHAFDKSVGEHPHLVCYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL + AG DP K +F+G GK ++ A + +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSAGELERVVVAGGDPAKVVFSGVGKTEAEMKRALELKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L + + G K + LRINPDVD Q HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELARLNKVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRALDV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
++ N L + G CH+GS +T + F DA ++ ID+++ +G + +L++GGGL
Sbjct: 183 YRLAQSLEN-LSIHGIDCHIGSQLTAIAPFIDATDRLLALIDQLKEEGITIKHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L ++L LI EPGR++ AN L+ V +K
Sbjct: 242 GVVY--RDELPPQPSDYAKALLARLSNHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +L+RP+LY A+Q I V P+ E +D+VGP+CE+ DFLGK+R L
Sbjct: 300 KNFAIIDAAMNDLMRPALYQAWQDI--VPVVPRQGEALTYDLVGPICETGDFLGKDRSL- 356
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G L V AGAY M+S YN + R E V
Sbjct: 357 VLDEGDLLAVRSAGAYGFVMSSNYNTRTRVAEVMV 391
>gi|359432156|ref|ZP_09222549.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20652]
gi|357921248|dbj|GAA58798.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20652]
Length = 417
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 218/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVASIAQQY-GTPCYVYSRATFERHYLAFDNATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTADEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIKTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
LK++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LKIIGVDCHIGSQLTEVRPFLEALDKLIALIDELKTNGIELTHLDIGGGLGVPYNNEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E L ++L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLANYKHLELIFEPGRAIAANAGILVTQVEFIKQNQDKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+R+L +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRDDETPTHNFDIVGPVCETGDFLGKDRKLALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|408479697|ref|ZP_11185916.1| diaminopimelate decarboxylase [Pseudomonas sp. R81]
Length = 415
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 222/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I ++ AL+G++ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRSFTDALDGVSHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKAEKIVFSGVGKTREDMRRALEVGVHCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFLDALDRLLALIDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIKAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V+ P+ +E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVT--PRASEARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L +H AGAY M+S YN + R E V
Sbjct: 361 LLAIHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|395799850|ref|ZP_10479129.1| diaminopimelate decarboxylase [Pseudomonas sp. Ag1]
gi|395335692|gb|EJF67554.1| diaminopimelate decarboxylase [Pseudomonas sp. Ag1]
Length = 415
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 219/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I ++ ALEG S++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSFADALEGTPSLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKADKIVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTSLPPFLDALDRLLALVDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLVSDYIKAVRERLEGRDLTLMFEPGRYIVANAGLLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V P+ E +D+VGP+CE+ DFL KER+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVK--PRAGEGRSYDIVGPICETGDFLAKERQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|167582586|ref|ZP_02375460.1| diaminopimelate decarboxylase [Burkholderia thailandensis TXDOH]
Length = 423
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 227/404 (56%), Gaps = 14/404 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V D+ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVCTADLAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRAQNVVFSGVGKSADEMRIALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVEQIEADGVKIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P + V E + +R + + EPGRSL N L+ V +K K
Sbjct: 246 Y--DDETPPDIGAYVRAVLERIDARGHGHREIWFEPGRSLTGNAGILLTRVEFLKQGEEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y A+ IE V+P D + +DVVGPVCES D+LG++R L
Sbjct: 304 NFAIVDAAMNDLARPAMYQAFHAIEPVTPR-TDVAAAVYDVVGPVCESGDWLGRDRSLAI 362
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 363 AP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGASAYLVRP 405
>gi|398887670|ref|ZP_10642329.1| diaminopimelate decarboxylase [Pseudomonas sp. GM55]
gi|398192138|gb|EJM79307.1| diaminopimelate decarboxylase [Pseudomonas sp. GM55]
Length = 415
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 215/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALVGTPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRTTAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|407367256|ref|ZP_11113788.1| diaminopimelate decarboxylase [Pseudomonas mandelii JR-1]
Length = 415
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/388 (37%), Positives = 216/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALVGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 188 LPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+ A +D+VGP+CE+ DFL K+REL + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRTAAARAYDIVGPICETGDFLAKDRELAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|398939618|ref|ZP_10668711.1| diaminopimelate decarboxylase [Pseudomonas sp. GM41(2012)]
gi|398163940|gb|EJM52089.1| diaminopimelate decarboxylase [Pseudomonas sp. GM41(2012)]
Length = 415
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRTTAAR--PYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAVEVLV 389
>gi|407794792|ref|ZP_11141813.1| diaminopimelate decarboxylase [Idiomarina xiamenensis 10-D-4]
gi|407210728|gb|EKE80603.1| diaminopimelate decarboxylase [Idiomarina xiamenensis 10-D-4]
Length = 421
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 154/403 (38%), Positives = 230/403 (57%), Gaps = 14/403 (3%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
E F+++ADG L + + ++ + E P Y+YS +TRN +A+ + + + YA
Sbjct: 5 EAAFTRQADGQLAVDGLPLKTLAERY-GTPLYIYSDAALTRNWQAFARHWPAPHRLC-YA 62
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN+N IL+ L +LG G +VSG EL L AG D + +F+G K + ++ A G
Sbjct: 63 VKANSNLAILQRLAQLGAGFDIVSGGELARVLAAGGDAAQVVFSGVAKSVTEITQALTAG 122
Query: 184 V-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEK 241
+ NV+S +L+ I + G V LRINPDVD Q HPY+ATG K +KFGI ++
Sbjct: 123 IGCFNVESLAELDRINAIAADLGCIAPVSLRINPDVDAQTHPYIATGLKANKFGIAMDDA 182
Query: 242 LQWFLDAVK-AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+ F+ A AH +K+VGA CH+GS I VD F DAA M++ + ++ + + +L+
Sbjct: 183 VASFVYAASLAH---VKVVGADCHIGSQILSVDPFLDAAQRMLDLVAELARRDIPLQHLD 239
Query: 301 IGGGLGIDYYHTG--AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
+GGG+GI Y A+ + L V+E +L L++EPGR+L+ N+ LV V
Sbjct: 240 MGGGMGIQYQQEAPFALAEYLQRLQALVKE--QQPHLTLMLEPGRALVGNSGVLVTQVEY 297
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
+K + K F ++D M +L+RP+LY A+ I V A + + + DVVGPVCE+ DFLG
Sbjct: 298 LKRSADKCFALVDAGMNDLVRPALYQAWHDIVPVH-ASTEPQATLVDVVGPVCETGDFLG 356
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
R L G L V +AGAY +MAS YN + R E VR+
Sbjct: 357 HARHLAV-KAGDYLAVMNAGAYGFTMASNYNTRPRAAELLVRA 398
>gi|148252717|ref|YP_001237302.1| diaminopimelate decarboxylase [Bradyrhizobium sp. BTAi1]
gi|146404890|gb|ABQ33396.1| diaminopimelate decarboxylase [Bradyrhizobium sp. BTAi1]
Length = 421
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/400 (36%), Positives = 217/400 (54%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + V PFY YS + R+ + +A G + +I YA+KAN+N
Sbjct: 8 DGVLHAEAVNLAGLAAQV-GTPFYCYSTATLERHYRVFAEAFTGQDVLICYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG K +F+G GK +L A + +N++S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPARKIVFSGVGKTEAELRAALAADIHCLNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L+ + + G + +R+NPDVD H ++TG +KFGI E + A
Sbjct: 127 EPELDLLARLANETGHTARISVRVNPDVDAGTHAKISTGKSENKFGIPLEHARKVY-ARA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A +++ G H+GS IT + A ++ ++ +RA G + +++ GGGLGI Y+
Sbjct: 186 AKMKGIEVTGVDVHIGSQITDLGPMETAFRILAEFVQTLRADGHTISHVDFGGGLGIPYH 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
AV P+P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDRAVPPEPAAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGEAKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+A+ I ++ PAP +A DVVGPVCES D+L +R LP P G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVIQPAP-NAPAFVADVVGPVCESGDYLALDRTLPEPRPG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + +GAY A TYN + PE V+ S +I P
Sbjct: 365 DLLAIMTSGAYGAVQACTYNTRALVPEVLVKGDQSAVIRP 404
>gi|77163847|ref|YP_342372.1| diaminopimelate decarboxylase [Nitrosococcus oceani ATCC 19707]
gi|254436067|ref|ZP_05049574.1| diaminopimelate decarboxylase [Nitrosococcus oceani AFC27]
gi|76882161|gb|ABA56842.1| diaminopimelate decarboxylase [Nitrosococcus oceani ATCC 19707]
gi|207089178|gb|EDZ66450.1| diaminopimelate decarboxylase [Nitrosococcus oceani AFC27]
Length = 417
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 224/391 (57%), Gaps = 17/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E++ + ++ + P Y+YS+ I A+ QA E I YA+KAN+N +L
Sbjct: 12 LWAEEIPLPEIASRFDT-PCYVYSRAAIEHQWRAFDQAFEKHPHQICYAVKANSNLAVLN 70
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL L AG DP + +F+G GK +++ A G+ NV+SE +
Sbjct: 71 ILARLGSGFDIVSVGELERVLAAGGDPGRIVFSGVGKRADEMERALAVGIACFNVESEAE 130
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L + + IAGK + V LR+NPDVD + HPY+ATG +++KFGI ++
Sbjct: 131 L---IRLNEIAGKLEQRAPVSLRVNPDVDARTHPYIATGLRDNKFGIEIDQALAVYARAA 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ + ++G CH+GS +T + F A ++ +D++ +G ++ ++++GGGLGI Y
Sbjct: 188 TLPH-IDILGVDCHIGSQLTSLSPFLAALERVLALVDQLAERGIKIRHIDLGGGLGIIYR 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P+ +R+ + RNL + IEPGR+++ N L+ + +K KNF ++
Sbjct: 247 DEAP--PSPQQYAAALRQKLAGRNLEIWIEPGRAIVGNGGVLLTRIEYLKQAPQKNFAIV 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDA--EISKFDVVGPVCESADFLGKERELPTPDR 428
D +M +L+RP+LYDA+Q I P DA E FDVVGPVCE+ DFLGK R+L +
Sbjct: 305 DAAMNDLLRPALYDAWQEI---IPVAVDATGEPLFFDVVGPVCETGDFLGKRRQLAI-EA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LVV AGAY +M+S YN + R E V
Sbjct: 361 GDLLVVRAAGAYGFTMSSNYNSRPRAAEIMV 391
>gi|398959673|ref|ZP_10678222.1| diaminopimelate decarboxylase [Pseudomonas sp. GM33]
gi|398144941|gb|EJM33750.1| diaminopimelate decarboxylase [Pseudomonas sp. GM33]
Length = 415
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 215/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGTPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRQSAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|113869390|ref|YP_727879.1| diaminopimelate decarboxylase [Ralstonia eutropha H16]
gi|113528166|emb|CAJ94511.1| diaminopimelate decarboxylase [Ralstonia eutropha H16]
Length = 419
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 231/399 (57%), Gaps = 13/399 (3%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
F + DG L E V + + P Y+YS+ +T +AY A +G + + YA+K
Sbjct: 3 AFFHRQDGALAVEQVPLARIAAEF-GTPTYVYSRAALTAAYQAYAAACQGRKAQVQYAMK 61
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGV 184
AN+N +L+ KLG G +VSG EL+ L AG DP K +F+G GK ++ LA A +
Sbjct: 62 ANSNLAVLQVFAKLGAGFDIVSGGELKRVLAAGGDPRKVVFSGVGKSAAEMELALAHDVR 121
Query: 185 FVNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +L+ + VA R+ GK+ V LRINPDVD + HPY++TG K +KFGI E +
Sbjct: 122 CFNVESIPELDRLNEVAGRV-GKRARVSLRINPDVDAKTHPYISTGLKGNKFGIAFEDVL 180
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A A P+ L++ G CH+GS IT+V+ + +A +++ ++ + G ++++++GG
Sbjct: 181 PTYRAAAALPH-LEVTGIDCHIGSQITEVEPYLEALDKVLDVVEALERDGIRLEHIDVGG 239
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVK 360
GLGI Y T P T+ E V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 240 GLGITY--TDETPPDITGFATTLLERVAARGHGHREVLFEPGRSLVGNAGVLLTQVEFLK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +L RP++Y+AY IE V +DA+ + +D+VGPVCES D+LG++
Sbjct: 298 PGAAKNFCIVDAAMNDLARPAMYEAYHRIEPV--VLRDAQAATYDIVGPVCESGDWLGRD 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L G L V AGAY +M+S YN + R E V
Sbjct: 356 RALAVQP-GDLLAVMSAGAYGFTMSSNYNTRPRAAEVMV 393
>gi|398992577|ref|ZP_10695541.1| diaminopimelate decarboxylase [Pseudomonas sp. GM21]
gi|398136586|gb|EJM25667.1| diaminopimelate decarboxylase [Pseudomonas sp. GM21]
Length = 415
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 216/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L+++G CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 188 LPN-LEILGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLAGDYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K+R+L + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRDTAARAYDIVGPICETGDFLAKDRQLAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|398822234|ref|ZP_10580619.1| diaminopimelate decarboxylase [Bradyrhizobium sp. YR681]
gi|398227058|gb|EJN13295.1| diaminopimelate decarboxylase [Bradyrhizobium sp. YR681]
Length = 421
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 216/399 (54%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFADAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L KLG GA +VSG EL+ AL AG K +F+G GK ++L A A + + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPAGKILFSGVGKTEDELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATEMGKTARISVRVNPDVDAGTHAKISTGKSENKFGIPLAHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G ++ +++ GGGLGI YY
Sbjct: 187 KLPG-IQVTGTDVHIGSQITDLSKMEIAFRILSEFVQTLRADGHDISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ AP+ A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQAPKGAATIMADVVGPVCETGDYLALDRALPTPKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LIAIMTAGAYGAVQAGTYNTRPLVPEVLVKGDQYAVVRP 404
>gi|74316244|ref|YP_313984.1| diaminopimelate decarboxylase [Thiobacillus denitrificans ATCC
25259]
gi|74055739|gb|AAZ96179.1| diaminopimelate decarboxylase [Thiobacillus denitrificans ATCC
25259]
Length = 414
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 220/393 (55%), Gaps = 12/393 (3%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L+ E V + + E P Y+YS+ + AY++A +I YA+KAN++
Sbjct: 6 RIDGRLHLEGVALDTLAERC-GTPLYVYSRAALEAAYRAYEEAFAATPHLICYAVKANSS 64
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L ++G G +VSG EL L A DP K +F+G GK ++++ A + G+ NV
Sbjct: 65 LALLNLFARMGAGFDIVSGGELARVLSAQGDPRKVVFSGVGKRVDEMRAALEAGILCFNV 124
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L + + GK V R+NPDVDP+ HPY++TG K +KFG+ +
Sbjct: 125 ESTSELHRLNRVAGELGKVAPVSFRVNPDVDPKTHPYISTGLKENKFGVPIAEAPALYRT 184
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A P+ +++ G CH+GS + + DAA + +D + A+G ++++++GGG+GI
Sbjct: 185 AAALPH-IRVTGIDCHIGSQLLDLSPLADAADRVFALVDALAAEGIALEHIDLGGGVGIS 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y G P + E R LI+EPGRSL+ N L+ V +K KNF
Sbjct: 244 Y--RGETAPDLAGYGRVLAERFAGRRETLIVEPGRSLVGNAGLLLARVEYLKLGADKNFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHI-ELVS-PAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
++D +M +L+RP+LY+AY I E+++ P P+ ++DVVGP+CE+ DFLG REL +
Sbjct: 302 IVDAAMNDLMRPALYEAYHEIVEVIARPLPK----RRYDVVGPICETGDFLGSAREL-SL 356
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G + + +GAY MSM+S YN + R E V
Sbjct: 357 DEGDLVALLSSGAYGMSMSSNYNSRPRAAEILV 389
>gi|395791723|ref|ZP_10471179.1| diaminopimelate decarboxylase [Bartonella alsatica IBS 382]
gi|395408026|gb|EJF74646.1| diaminopimelate decarboxylase [Bartonella alsatica IBS 382]
Length = 424
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 138/400 (34%), Positives = 225/400 (56%), Gaps = 7/400 (1%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G LY E + + + + V PFY YS + ++A + + S+I YA+KAN+N +
Sbjct: 9 GMLYVEGLSLSALAQEV-GTPFYCYSANALVTRFRDCQKAFQEMPSLIAYAVKANSNQAV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L+ L G GA +VS ELR AL G + +++G GK + ++ A + ++ NV+SE
Sbjct: 68 LQLLAANGSGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQDIYCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK- 250
+LE + + K V LRINPD+D + H + TG +KFGI L + +A K
Sbjct: 128 PELEQLSQRAVALSKTARVSLRINPDIDAKTHKKITTGKSENKFGI---PLLFARNAYKK 184
Query: 251 -AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A L++ G H+GS I + F +A +++ N++ ++ + G+ + +++IGGGLGI Y
Sbjct: 185 AASLPGLQVSGVDMHIGSQICDLKPFEEAFLVIANFVRQLWSDGYAITHIDIGGGLGITY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+ ++P + V++ + +N+I+EPGRS++ LV V +K +NF++
Sbjct: 245 GNEEHIIPSFFDYAALVKKHIAPLGINIIVEPGRSIVGEAGVLVTSVLYLKKGKGRNFVI 304
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +LIRP+LYDA+Q++ LV P DA + + D+VG VCE+ D+L R +P G
Sbjct: 305 VDAAMNDLIRPTLYDAWQNVVLVKQTPVDAALIRADIVGAVCETGDYLALNRCVPILAPG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY MASTYN ++ PE V+ +I P
Sbjct: 365 DLLAITGAGAYGAVMASTYNSRLLVPEVLVQDTRYAVIRP 404
>gi|381198123|ref|ZP_09905462.1| diaminopimelate decarboxylase [Acinetobacter lwoffii WJ10621]
Length = 416
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 221/388 (56%), Gaps = 7/388 (1%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E +Q + + P Y+YSK ++ +A + ++ I +A+K+N+N +
Sbjct: 8 GVLHAEQCSLQQLAQQF-GTPLYVYSKATFEKHFTEMDRAFDFIDHQICFAVKSNSNIAV 66
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L KLG G +V+G EL L+AG D +K +F+G GK D+ A + G+ NV+S
Sbjct: 67 LNVLAKLGAGFDIVTGGELARVLKAGGDASKIVFSGLGKTEIDVQKALEVGIACFNVESH 126
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 127 AELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVFETYQYAAT 186
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L ++G CH+GS +T+ F DA ++ ID+++ G ++ +++IGGGLG+ Y
Sbjct: 187 LPN-LDIIGIDCHIGSQLTETQPFVDALDRVIVMIDQLKTMGIQLKHIDIGGGLGVTY-- 243
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
V P + ++ + L + +EPGRS+ AN L+ V +K +NF +ID
Sbjct: 244 KDEVPPTVFEYANAMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTIHRNFAIID 303
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY+A+ I+LV+P D E ++DVVG +CE+ DFLGKER L +
Sbjct: 304 AAMNDLIRPALYEAWMDIQLVTPR-SDVEAKEWDVVGAICETGDFLGKERLLALKENDV- 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 362 LAVLGAGAYGFVMSSNYNSRGRAAEVMV 389
>gi|299132212|ref|ZP_07025407.1| diaminopimelate decarboxylase [Afipia sp. 1NLS2]
gi|298592349|gb|EFI52549.1| diaminopimelate decarboxylase [Afipia sp. 1NLS2]
Length = 421
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 215/406 (52%), Gaps = 4/406 (0%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ EDV + + E V PFY YS + R+ + +A GL++++ YA+
Sbjct: 2 HHFHYR-NGVLHAEDVDIDRLAEAVGT-PFYCYSTATLERHYRVFAEAFAGLDTLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG GA +VSG EL A AG + +F+G GK +L A E +
Sbjct: 60 KANSNQSVLRTLARLGAGADVVSGGELMRARAAGIPADRIVFSGVGKTESELRQALAENI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +L+ + + G + LR+NPD+ H ++TG +KFGI E +
Sbjct: 120 LCINVESEPELDLLSRIAHETGNTARISLRLNPDIGAGGHAKISTGKSENKFGIPLEGAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P +++ G H+GS IT + A L+V+++ +RA G +D+++ GG
Sbjct: 180 AVYARAAKLPG-IRVTGVDMHIGSQITDLGPMESAFTLLVDFVRTLRADGHAIDHIDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y V P P D V+ + + L+ EPGR ++ N LV+ V VK
Sbjct: 239 GLGIPYESDLPVPPAPDAYADVVKRVTRGLDCTLMFEPGRMIVGNAGILVSRVIYVKHGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF++ID +M +LIRP+LY+A+ I V + DVVGPVCE+ D+L R L
Sbjct: 299 ARNFVIIDAAMNDLIRPTLYEAHHDIIPVREVSSPGDGIVADVVGPVCETGDYLALGRHL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
P G + V +GAY A TYN + PE V+ ++ P
Sbjct: 359 PALKAGDLVAVMSSGAYGAVQAGTYNTRGLVPEVLVKGDQYAVVRP 404
>gi|410664069|ref|YP_006916440.1| diaminopimelate decarboxylase [Simiduia agarivorans SA1 = DSM
21679]
gi|409026426|gb|AFU98710.1| diaminopimelate decarboxylase [Simiduia agarivorans SA1 = DSM
21679]
Length = 416
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 219/366 (59%), Gaps = 9/366 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P ++Y +I+++ Y AL G +++ YA+KAN+N +L HL LG G +VSG EL
Sbjct: 28 PAFVYDLDKISQHYRDYANAL-GDGNLLCYAVKANSNLSVLRHLVALGAGFDIVSGGELL 86
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
+RAG +P K +F+G GK ++ LA G+ NV+SE +L I + GK +
Sbjct: 87 RVVRAGGNPAKVVFSGVGKSDAEIRLALDMGIKCFNVESESELRRISRQAVDLGKVAPIS 146
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
+R+NPDVD Q HPY+ATG K++KFGI ++ L + A + + L++VG CH+GS +T
Sbjct: 147 IRVNPDVDAQTHPYIATGMKDNKFGIAMDQALACYTLATEL--SNLRIVGVDCHIGSQLT 204
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
++ F DA ++ +D++ QG ++++++GGGLGI Y + LP + + RE +
Sbjct: 205 QLAPFADAFERVLALVDQLAEQGIHLNHVDMGGGLGIAYGNEN--LPDKASYLALFRETL 262
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
+R L LIIEPGRSL+ + L+ V +K K F+V+D +M + +RP+LY A I
Sbjct: 263 AARGLQLIIEPGRSLVGDAGVLITEVLCIKDTAEKRFVVLDTAMNDNLRPALYGAKHRIS 322
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
++ + ++VGPVCESAD + ++++L D G L+VHD GAY +M+S YN
Sbjct: 323 VLQSGCTEPA-RACELVGPVCESADVIARDQKLAL-DEGDLLLVHDVGAYGFAMSSNYNA 380
Query: 451 KMRPPE 456
+ R E
Sbjct: 381 RPRAAE 386
>gi|73542823|ref|YP_297343.1| diaminopimelate decarboxylase [Ralstonia eutropha JMP134]
gi|72120236|gb|AAZ62499.1| diaminopimelate decarboxylase [Ralstonia eutropha JMP134]
Length = 419
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/398 (36%), Positives = 222/398 (55%), Gaps = 11/398 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
F + DG L E V + + P Y+YS+ +T + Y A +G + + YA+K
Sbjct: 3 AFFHRQDGALMAEQVPLAQIAAEF-GTPAYVYSRAALTAAYQGYAAACKGRKAQVQYAMK 61
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGV 184
AN+N +L+ KLG G +VSG EL+ L AG DP K +F+G GK ++ LA A +
Sbjct: 62 ANSNLAVLQVFAKLGAGFDIVSGGELKRVLAAGGDPRKVVFSGVGKNAAEMELALAHDVR 121
Query: 185 FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +L+ + + GK+ V LRINPDVD + HPY++TG K +KFGI E +
Sbjct: 122 CFNVESIPELDRLNAVAGQIGKRARVSLRINPDVDAKTHPYISTGLKGNKFGIAFEDVLP 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A PN +++ G CH+GS IT+V + +A +++ ++ + +G ++++++GGG
Sbjct: 182 TYRAAAALPN-IEVTGIDCHIGSQITEVAPYLEALDKVLDVVEALEREGIVLEHIDVGGG 240
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
LGI Y T P T+ + V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 241 LGITY--TDETPPDITGFATTLLDRVAARGHAHREVLFEPGRSLVGNAGVLLTQVEFLKP 298
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y+AY IE V + +D+VGPVCES D+LG++R
Sbjct: 299 GAAKNFCIVDAAMNDLARPAMYEAYHRIEPVKANGGSQVV--YDIVGPVCESGDWLGRDR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L G L V AGAY M+S YN + R E V
Sbjct: 357 ALAV-QPGDLLAVMSAGAYGFVMSSNYNTRPRAAEVMV 393
>gi|378953596|ref|YP_005211084.1| protein LysA [Pseudomonas fluorescens F113]
gi|359763610|gb|AEV65689.1| LysA [Pseudomonas fluorescens F113]
Length = 415
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 216/388 (55%), Gaps = 8/388 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + ALEG+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALEGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 68 LNVLARLGAGFDIVSSGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + + + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELERLQIVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAAQ 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 188 LPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYRD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++D
Sbjct: 247 EEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIVD 304
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 305 AAMNDLIRPALYQAWMDVTAVR--PRDTAARSYDIVGPICETGDFLAKGRELAL-EEGDL 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 362 LAVHSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|426412181|ref|YP_007032280.1| diaminopimelate decarboxylase [Pseudomonas sp. UW4]
gi|426270398|gb|AFY22475.1| diaminopimelate decarboxylase [Pseudomonas sp. UW4]
Length = 415
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 215/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I AY AL G ++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYLAYADALTGTPHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T + F DA ++ +D++ G + ++++GGGLG+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTLPPFIDALDRLLGLVDRLGDCGIYLRHIDLGGGLGVRYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLDGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVRPRQSAAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|397677205|ref|YP_006518743.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395397894|gb|AFN57221.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 421
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 215/387 (55%), Gaps = 10/387 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---SIIGYA 123
FS K +G L ED+ + ++ P Y+YS +T + +AL+G +++ +A
Sbjct: 4 FSLK-NGMLCVEDIPLPEIAAQY-GTPCYVYSHSYLTERARRFTKALDGAGKGKALVAFA 61
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN + IL K G GA +VS E+R A+ AG P + +F+G GK E++ A + G
Sbjct: 62 VKANPSQAILASFAKEGLGADVVSAGEIRRAVHAGIPPERIVFSGVGKTAEEMRYALEIG 121
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S ++E + + GKK V LRINPDVDP H +ATG ++KFGI E+
Sbjct: 122 IGQFNIESVSEIEMLAEVAASLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEEA 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ V ++P+ LK+ G H+GS IT + F AA + I + G ++ +++G
Sbjct: 182 MSAYEKVASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHTIETVDLG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLG+ Y P + ++ + N LI EPGRSLIAN L++ V VK +
Sbjct: 241 GGLGVRYKDDQPEPPSIEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGILLSKVIRVKES 300
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
T F+++D +M +L+RP+LYDAY I+ V+P+ A+ + D+VGPVCE+ D + R
Sbjct: 301 KTARFVILDAAMNDLVRPTLYDAYHEIKAVTPS---AQAYQADIVGPVCETGDIFARNRS 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYN 449
+P + + AGAY +MAS YN
Sbjct: 358 IPAVKPDDLVAIMSAGAYGATMASAYN 384
>gi|254487951|ref|ZP_05101156.1| diaminopimelate decarboxylase [Roseobacter sp. GAI101]
gi|214044820|gb|EEB85458.1| diaminopimelate decarboxylase [Roseobacter sp. GAI101]
Length = 421
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 221/400 (55%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ TV PFY+YS + R+ +A+ ALEG++ ++ YA+KAN+N
Sbjct: 8 DGALFAEDVAISEIAATV-GTPFYVYSTATLLRHFKAFDDALEGMDHLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L + G G +VS E A AG K +F+G GK ++ LA + G+ NV+S
Sbjct: 67 VLRTLAQAGAGMDVVSAGEYLRAKAAGVPGDKIVFSGVGKTAAEIRLALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + +R GK + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEVLDTVARSLGKVAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYRMAG 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A L+++G H+GS +T + F A + + +RA G + L++GGGLGI Y
Sbjct: 187 AMAG-LEVIGIDVHIGSQLTDLAPFEQAYDKVAELTEVLRADGHNIRRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P PR+ V+ + + IEPGR + N +++ V VK+ ++F+++
Sbjct: 246 RSNEAPPLPRDYGAMVQRKLGHLGCEVEIEPGRLIAGNAGLMISEVIYVKSGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+A+ I +V PAP AE +D+VGPVCES D K+R +P G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIIPVVEPAP-GAEQQPYDIVGPVCESGDTFAKQRMMPALAAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY M+S YN + PE V+ +I P
Sbjct: 365 DLVAFRSAGAYGAVMSSEYNSRALIPEVLVKDDQFAVIRP 404
>gi|307262007|ref|ZP_07543662.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868290|gb|EFN00112.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 416
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 225/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQ-HGTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMVRLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + +GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQSGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|121603580|ref|YP_980909.1| diaminopimelate decarboxylase [Polaromonas naphthalenivorans CJ2]
gi|120592549|gb|ABM35988.1| diaminopimelate decarboxylase [Polaromonas naphthalenivorans CJ2]
Length = 428
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 230/405 (56%), Gaps = 18/405 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ EDVR ++ T P ++YSK + + +Y++ EG ++ I YA+KAN++
Sbjct: 16 DNALFAEDVRASELAATY-GTPLFIYSKTAMLSALASYQRGFEGRDAQICYAMKANSSLA 74
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGVFVNVD 189
+L+ + CG +VSG EL AG D K IF+G GK ++ LAA G F NV+
Sbjct: 75 VLQVFARADCGFDIVSGGELERVQAAGGDLKKVIFSGVGKTRAEMCQALAAGIGCF-NVE 133
Query: 190 SEFDLE---NIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWF 245
SE +L+ + VA ++ + V +R+NP+VDP+ HPY++TG K +KFG+ +E L+ +
Sbjct: 134 SEAELDVLSEVAVAMKL---RAPVSIRVNPNVDPKTHPYISTGLKGNKFGVAHEDALRIY 190
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A A LK+VG CH+GS IT+V + DA +++ + I A G + +++ GGGL
Sbjct: 191 QHA--ASLEGLKVVGIDCHIGSQITEVTPYLDAMDRVLDLVAAIEAAGIALAHIDFGGGL 248
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTN 362
GI+Y + P+ L + + +R L+IEPGRSL+ N + V +K
Sbjct: 249 GINY-SADDMPPEADALWRQLLAKLDARGYGGKKLMIEPGRSLVGNAGICITEVLYLKPG 307
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF +ID +M +L RP++Y A+ I V A + +DVVGPVCES D++G++R
Sbjct: 308 EQKNFCIIDAAMNDLPRPAMYQAFHAIVPVERAATETAGVIYDVVGPVCESGDWIGRDRI 367
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L G L V AGAYCMSMAS YN + R E V ++ +I
Sbjct: 368 LDVA-AGDQLAVMSAGAYCMSMASNYNTRGRAAELLVDGDLARLI 411
>gi|392539831|ref|ZP_10286968.1| diaminopimelate decarboxylase [Pseudoalteromonas marina mano4]
Length = 417
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 217/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVGIAAIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDAGKVVFSGVAKTADEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLVAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G CH+GS +T+V F +A ++ ID++++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LNIIGVDCHIGSQLTEVKPFLEALDKLLALIDELKSVGIELSHLDIGGGLGVPYDNEQ 248
Query: 314 AVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + V L R+L LI EPGR++ AN L+ V +K N +K F ++D
Sbjct: 249 P--PHPSEYAEQVTARLENYRHLELIFEPGRAIAANAGVLITQVEFIKQNQSKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS D FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDDTPTHNFDIVGPVCETGDFLGKDRELALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|407717327|ref|YP_006838607.1| diaminopimelate decarboxylase [Cycloclasticus sp. P1]
gi|407257663|gb|AFT68104.1| Diaminopimelate decarboxylase [Cycloclasticus sp. P1]
Length = 423
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 224/394 (56%), Gaps = 7/394 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
+ + D L+ E+V VQ ++E P Y+YS+ + R+ +A+ QA EG +I YA+KA
Sbjct: 3 YFQYQDKQLFAENVSVQSIVEQFSS-PTYIYSRATLERHWKAFDQAFEGRPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG P K +F+G GK +++ A G+
Sbjct: 62 NSNIAVLNVLARLGSGFDIVSIGELERVLTAGGQPEKIVFSGVGKRHDEIRRALDVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+ +L+ I + G N+ +R+NPDVD Q HPY++TG K +KFG+ E
Sbjct: 122 FNVEVSAELDRINEIAGELGHIANISIRVNPDVDAQTHPYISTGLKENKFGLDIETAFME 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A P+ L + G CH+GS +T V F DA +++ +D+++ G +D+L++GGGL
Sbjct: 182 YQRANALPH-LNITGLDCHIGSQLTDVAPFVDALDRVLSLLDRLQGVGIRIDHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y P P + + + + + +++EPGR++ N LV V +K K
Sbjct: 241 GICYRDEQP--PLPADYVKALYQKLGDLPYEILLEPGRAIAGNAGILVTKVEYIKPVEGK 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
F ++D +M +L+RP+LY A+Q+I V+ A+ + +D+VGPVCE+ DFLGK+REL
Sbjct: 299 RFAIVDAAMNDLMRPALYQAWQNIVPVN-LTSTAKTACYDIVGPVCETGDFLGKDRELAI 357
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY +M+S YN + E V
Sbjct: 358 -EEGDLLAVRSAGAYGFTMSSNYNSRPSAAEVMV 390
>gi|437999654|ref|YP_007183387.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|429338888|gb|AFZ83310.1| diaminopimelate decarboxylase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
Length = 401
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/380 (39%), Positives = 226/380 (59%), Gaps = 12/380 (3%)
Query: 82 VQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC 141
+ ++E +E P Y+YSK IT ++Y QA++ N ++ Y +KAN+N +L+ +LG
Sbjct: 1 MSSIVEKLET-PLYIYSKRAITEAWDSYYQAIKNRNCLVCYGMKANSNLAVLKEFSRLGS 59
Query: 142 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVA 200
G +VSG EL L DP K +F+G GK ++ A + G+ NV+SE +L NI
Sbjct: 60 GFDIVSGGELERVLAIKADPKKVVFSGVGKQSWEIEKAIKSGIKCFNVESESELYNISKI 119
Query: 201 SRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAHPNELKLV 259
++ G + LR+NPDVD HPY++TG K +KFGI N + AV PN L++V
Sbjct: 120 AKNIGVIAPISLRVNPDVDANTHPYISTGLKENKFGISINTAYDCYKIAV-GLPN-LEIV 177
Query: 260 GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKP 319
G CH+GS +T++ F D+ ++ I+K++A G ++ +++IGGG+GI Y + PK
Sbjct: 178 GIDCHIGSQLTEIKPFIDSIEKIILLINKLKASGIQIKHIDIGGGIGIQYKEESCISPK- 236
Query: 320 RNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAE 376
L+D V + +L +I+EPGRSLI N LV V +K + +NF+++D +M +
Sbjct: 237 -ELVDKVFAKLEDNDLGDLQVILEPGRSLIGNAGILVTKVQYLKKSEDRNFVIVDAAMND 295
Query: 377 LIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHD 436
LIRP+LY +Y E+V +D ++DVVGPVCES+D+ K+R L G L +
Sbjct: 296 LIRPALYQSYH--EIVPVIKRDGAKKEYDVVGPVCESSDWFAKDRLLNELYEGELLAIES 353
Query: 437 AGAYCMSMASTYNLKMRPPE 456
AGAYCM+MAS YN + R E
Sbjct: 354 AGAYCMTMASNYNTRGRAAE 373
>gi|119469651|ref|ZP_01612520.1| putative diaminopimelate decarboxylase [Alteromonadales bacterium
TW-7]
gi|119446898|gb|EAW28169.1| putative diaminopimelate decarboxylase [Alteromonadales bacterium
TW-7]
Length = 417
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 217/387 (56%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVGIAAIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDAGKVVFSGVAKTADEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLVAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G CH+GS +T+V F +A ++ ID++++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LNVIGVDCHIGSQLTEVKPFLEALDKLLALIDELKSVGIELSHLDIGGGLGVPYDNEQ 248
Query: 314 AVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + V L R+L LI EPGR++ AN L+ V +K N +K F ++D
Sbjct: 249 P--PHPSEYAEQVTARLENYRHLELIFEPGRAIAANAGVLITQVEFIKQNQSKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS D FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDDTPTHNFDIVGPVCETGDFLGKDRELALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|333982104|ref|YP_004511314.1| diaminopimelate decarboxylase [Methylomonas methanica MC09]
gi|333806145|gb|AEF98814.1| diaminopimelate decarboxylase [Methylomonas methanica MC09]
Length = 416
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 223/391 (57%), Gaps = 17/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED V D+ P Y+YS+ + R+ A+ A G +I YA+KAN+N IL
Sbjct: 11 LFAEDSAVDDIAAEF-GTPCYVYSRATLERHWRAFDDAFNGYPHLICYAVKANSNLAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS E++ L AG P K +F+G GK +++ A Q G+ NV+ +
Sbjct: 70 LLARLGSGFDIVSVGEMQRVLAAGGMPEKIVFSGVGKREDEIRAALQVGIRCFNVEVSGE 129
Query: 194 LENIVVASRIAGKK---VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L+ I +R+AG+ V R+NPDVD + HPY++TG K +KFGI +Q + +
Sbjct: 130 LDRI---NRLAGELGVIAPVSFRVNPDVDAKTHPYISTGLKENKFGI---DIQSAIHEYR 183
Query: 251 --AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
AH +K+VG CH+GS +T+ F DA ++ +D+++++G + +L++GGGLGI
Sbjct: 184 RAAHMPNIKIVGIDCHIGSQLTETSPFLDAMDRVLALVDQLQSEGISLHHLDLGGGLGIC 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P P + + + + R +++EPGR+++ N L+ V +K KNF
Sbjct: 244 YRDEQP--PLPAEYVSALLDKLGGRGFEIMLEPGRAIVGNAGILLTKVEYLKPTAGKNFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D +M +L+RPSLY A+Q I + + AE +D+VGPVCE+ DFLGK REL
Sbjct: 302 IVDAAMNDLVRPSLYGAWQDI-IPADEYSKAEPLTWDIVGPVCETGDFLGKNRELKIAP- 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY +M+S YN + RP E V
Sbjct: 360 GDLLAVRSAGAYGFTMSSNYNSRPRPAEVMV 390
>gi|190150854|ref|YP_001969379.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307264204|ref|ZP_07545795.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915985|gb|ACE62237.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870450|gb|EFN02203.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 416
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 225/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQ-HGTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K+ P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|395651933|ref|ZP_10439783.1| diaminopimelate decarboxylase [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 415
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I ++ L+G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSFTDPLDGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKVVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 AEELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFLDALDRLLALVDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIKAVRERIEGRDLTLMFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V P+D++ +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVK--PRDSQARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|229593312|ref|YP_002875431.1| diaminopimelate decarboxylase [Pseudomonas fluorescens SBW25]
gi|229365178|emb|CAY53443.1| diaminopimelate decarboxylase [Pseudomonas fluorescens SBW25]
Length = 415
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I ++ AL+G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSFTDALDGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKADKIVFSGVGKTREDMRRALEVGVHCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQGVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTSLPPFLDALDRLLALIDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIQAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V+ P+++E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVT--PRNSEARAYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|291612946|ref|YP_003523103.1| diaminopimelate decarboxylase [Sideroxydans lithotrophicus ES-1]
gi|291583058|gb|ADE10716.1| diaminopimelate decarboxylase [Sideroxydans lithotrophicus ES-1]
Length = 433
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 225/403 (55%), Gaps = 24/403 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V + ++ + P Y+YS+ +T + + +AL+ + +I YA+KAN+N IL
Sbjct: 12 LYAEKVALSEIAQRF-GTPCYVYSRAALTDSYRQFAEALKSRDHLICYAVKANSNLAILN 70
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+LG G +VSG EL+ L AG +K +F+G GK ++ A + + NV+S +
Sbjct: 71 LFARLGAGFDIVSGGELQRVLAAGGAASKVVFSGVGKSEAEMRQALEAEILCFNVESAPE 130
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAH 252
L+ + + GK V LR+NPDVD + HPY++TG K +KFG+ E L+ + A A
Sbjct: 131 LDRLNALAGSMGKVAPVSLRVNPDVDAKTHPYISTGLKQNKFGVAYTEALELYRKAA-AM 189
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN L++ G CH+GS +T+ F AA ++ +DK+ A G +++L++GGGLGI Y
Sbjct: 190 PN-LRVTGMDCHIGSQLTETSPFIAAAEKVLALVDKLAAAGITLEHLDLGGGLGIRY--D 246
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P + ++ R+ LI+EPGR L+ N L+ + +K KNF ++D
Sbjct: 247 DETPPSIAEYGKALLAVLQGRSEKLIVEPGRVLVGNAGVLLTRIEYLKHGEEKNFAIVDA 306
Query: 373 SMAELIRPSLYDAY---------QHIELVSPAPQDAEISK-------FDVVGPVCESADF 416
+M +L+RP+LYDA+ Q+ L + PQ E + ++VVGP+CE+ DF
Sbjct: 307 AMNDLMRPALYDAWHAILPVQRRQNAPLSNSLPQAGERTSEKSNSQIYEVVGPICETGDF 366
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+G RE+ D+G L V AGAY MSM+S YN + R E V
Sbjct: 367 IGHAREMAV-DKGDALAVMSAGAYGMSMSSNYNTRPRAAEVMV 408
>gi|77359070|ref|YP_338645.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
TAC125]
gi|76873981|emb|CAI85202.1| putative diaminopimelate decarboxylase [Pseudoalteromonas
haloplanktis TAC125]
Length = 417
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 216/387 (55%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSIASIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDASKVVFSGVAKTADEIAYALKLGIKCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI + + P
Sbjct: 130 LERISEVACELNLAAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G CH+GS +T+ F +A ++ ID+++A E+ +L+IGGGLG+ Y
Sbjct: 190 G-LNIIGVDCHIGSQLTETRPFLEALDKLLTLIDELKACNIELTHLDIGGGLGVTYNDEQ 248
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V E LV R+L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTERLVNYRHLELIFEPGRAIAANAGVLVTQVEFIKQNQDKYFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RP+LY A+Q I VS + FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPALYQAWQKIIPVSVRDDETPTHNFDIVGPVCETGDFLGKDRELALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN + R E V
Sbjct: 366 VQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|170719432|ref|YP_001747120.1| diaminopimelate decarboxylase [Pseudomonas putida W619]
gi|169757435|gb|ACA70751.1| diaminopimelate decarboxylase [Pseudomonas putida W619]
Length = 415
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 222/389 (57%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G+ ++ +A+KAN+N
Sbjct: 8 DGGLFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSYTDALQGVEHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L ++G G +VSG EL L AG + +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARMGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L++VG CH+GS +T V+ F DA +++ +D++ G + +L++GGG+G+ Y
Sbjct: 187 QLPN-LEVVGVDCHIGSQLTTVEPFLDALDRLLDLVDRLADCGIHLRHLDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I +RE V R+L L+ EPGR ++AN L+ V +K K+F +I
Sbjct: 246 DEEP--PLVADYIKAIRERVGDRDLALVFEPGRYIVANAGALLTRVEYLKHTEHKDFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V+ P++ E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMGVSAVT--PREGEGRAYDLVGPICETGDFLAKDRQLNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVQSAGAYGFVMSSNYNTRGRCAEILV 389
>gi|406035508|ref|ZP_11042872.1| diaminopimelate decarboxylase [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 416
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E + + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLDQLAQQF-GTPLYVYSKATFEKHYLDMHRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG DP K +F+G GK D+ A G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVTGGELARVLAAGGDPAKIVFSGLGKSEADIEKALTVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVNETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L++VG CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 184 AASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVILMIEQLKGLGINLKHIDIGGGLGVC 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPSVEEYANAMRPALEKLGLKVYMEPGRSISANAGVLLTRVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V+P P D E+ +D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQSVNPNP-DVEVKTWDLVGAICETGDFLGKERDLALQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|167838175|ref|ZP_02465034.1| diaminopimelate decarboxylase [Burkholderia thailandensis MSMB43]
gi|424907057|ref|ZP_18330548.1| diaminopimelate decarboxylase [Burkholderia thailandensis MSMB43]
gi|390927414|gb|EIP84823.1| diaminopimelate decarboxylase [Burkholderia thailandensis MSMB43]
Length = 423
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 153/404 (37%), Positives = 226/404 (55%), Gaps = 14/404 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V D+ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSAADLAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRAQNVVFSGVGKNADEMRIALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVEQIEADGVKIGHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P + V E + +R + + EPGRSL N L+ V +K K
Sbjct: 246 Y--DDETPPDIGAYVRAVLERIDARGHGHREIWFEPGRSLTGNAGILLTRVEFLKQGEEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y A+ IE V+P D + +DVVGPVCES D+LG+ R L
Sbjct: 304 NFAIVDAAMNDLARPAMYQAFHAIEPVTPR-MDVAAAVYDVVGPVCESGDWLGRGRSLAI 362
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 363 AP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|119475311|ref|ZP_01615664.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2143]
gi|119451514|gb|EAW32747.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2143]
Length = 415
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 137/368 (37%), Positives = 210/368 (57%), Gaps = 6/368 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + + +Y++AL G +I YA+KAN+N +L L +LG G +VSG EL
Sbjct: 28 PTYVYSRGYLEQQFLSYQRALAGRQHMICYAVKANSNIAVLNVLARLGAGFDIVSGGELE 87
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG DP K +F+G K ++ A + G+ N++SE +L + + G ++
Sbjct: 88 RVLAAGGDPAKVVFSGVAKTPAEMRQALEAGIHCFNLESESELGVLQQVAADLGVSASIS 147
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NPDVD HPY++TG K +KFGI ++ + + + ++G CH+GS +
Sbjct: 148 IRVNPDVDANTHPYISTGLKENKFGIDIDRAPAVYRRAR-DLSHINIIGVDCHIGSQLVD 206
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
F DA ++ ID + G + +L++GGGLG+ Y T P P I+ V +
Sbjct: 207 TTPFLDALDRLLKLIDTLANDGIHISHLDLGGGLGVCY--TDEQPPSPAEYIEKVLTHIG 264
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
R++ L EPGRS+ AN L+ V +K N KNF VID +M ++IRP+LY A+ I+
Sbjct: 265 DRDITLAFEPGRSICANAGVLLTKVEYLKCNPEKNFAVIDAAMNDMIRPALYQAWMDIKA 324
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
V P ++ +D+VGPVCE+ DFLGK+R+L + G L V AGAY +M+S YN +
Sbjct: 325 VCPR-KNEPTKTWDIVGPVCETGDFLGKDRQLELRE-GDLLSVSSAGAYGFTMSSNYNSR 382
Query: 452 MRPPEYWV 459
+R E V
Sbjct: 383 VRAAEVMV 390
>gi|392952207|ref|ZP_10317762.1| diaminopimelate decarboxylase [Hydrocarboniphaga effusa AP103]
gi|391861169|gb|EIT71697.1| diaminopimelate decarboxylase [Hydrocarboniphaga effusa AP103]
Length = 419
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 224/392 (57%), Gaps = 13/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY E+V + + E P Y+YS+ + + A+ +AL + + YA+KAN+N
Sbjct: 8 NGELYAENVPLSSIAEQ-HGTPTYVYSRAALEQQYRAFDEALASIPHQVCYAVKANSNVA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS ELR L+AG DPTK +F+G GK ++L A G+ NV+S
Sbjct: 67 VLQVLARLGSGFDIVSAGELRRVLKAGGDPTKVVFSGVGKTADELRFALDTGIGCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG---IRNEKLQWFLD 247
E +L + +R GK+ ++ LR+NPDVD + HPY++TG K +KFG + E+L + +
Sbjct: 127 EAELRQLDTIARSLGKRADIALRVNPDVDAKTHPYISTGLKQNKFGVDLVTAERL--YRE 184
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A A+ L++VG H+GS + V + DA ++ +DK+ G E +++++GGGLG+
Sbjct: 185 A--ANMGGLRIVGIASHIGSQLLDVAPYLDALDRVLALVDKLEKAGIEFEHIDVGGGLGV 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + +P + + + R L + EPGR++ L+ V +K KNF
Sbjct: 243 RYRDEQPL--EPASWAAAILPKLAGRGLAVHTEPGRAIAGAAGVLLTRVELLKQTEEKNF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
VID +M +L+RP+LY A+ I + A+ +D+VGPVCES D++GKEREL +
Sbjct: 301 AVIDAAMNDLLRPALYQAWMDIVPLRE-KSGAKPLNYDLVGPVCESGDWIGKERELAL-E 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V AGAY M+S YN + R E V
Sbjct: 359 AGDLLAVKTAGAYGFVMSSNYNTRGRAAEIMV 390
>gi|359298519|ref|ZP_09184358.1| diaminopimelate decarboxylase [Haemophilus [parainfluenzae] CCUG
13788]
gi|402307111|ref|ZP_10826141.1| diaminopimelate decarboxylase [Haemophilus sputorum HK 2154]
gi|400373503|gb|EJP26433.1| diaminopimelate decarboxylase [Haemophilus sputorum HK 2154]
Length = 418
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 226/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V + D+++ P Y+YS+ + R+ A+ A +I +A+K+N+N +L
Sbjct: 11 LFAEEVAIADIIKA-HGTPAYIYSRATLERHWHAFDNAFGEHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K ++ A + GV NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSHSEIARALEVGVRCFNVESIPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD + HPY++TG K +KFG+ ++ + K+ P
Sbjct: 130 LHRINEVAGKMGKVAPISLRVNPDVDAKTHPYISTGLKENKFGVSVQQAREVYRLAKSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y+ G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPYH--G 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L NL +I+EPGR++ AN LV V +K+N +NF ++D
Sbjct: 247 EQPPHPTEYAKALLEKLKAYPNLEIILEPGRAISANAGILVTKVEYLKSNEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + + E S +DVVGP+CE++DFLGK R L + G +
Sbjct: 307 GMNDMIRPALYEAYMEITEVDQS-LNREASVYDVVGPICETSDFLGKARTLSVSE-GDYV 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEILV 391
>gi|298293363|ref|YP_003695302.1| diaminopimelate decarboxylase [Starkeya novella DSM 506]
gi|296929874|gb|ADH90683.1| diaminopimelate decarboxylase [Starkeya novella DSM 506]
Length = 422
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 209/398 (52%), Gaps = 4/398 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + DG L+ ED + D+ V PFY YS + R+ + + +A + + YA+
Sbjct: 2 HHFAYR-DGLLHAEDASLVDIAHAV-GTPFYAYSTATLERHYKVFTEAFADARATLCYAL 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N ++ KLG GA +VSG EL+ AL AG P K +F+G GK E++ A GV
Sbjct: 60 KANSNQAVIATFAKLGAGADIVSGGELKRALAAGIAPHKIVFSGVGKTREEMAAALDAGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + G + +R+NPDVD + H ++TG +KFGI + +
Sbjct: 120 MCFNVESEPELLTLSEVAVSHGVAAPISVRVNPDVDAKTHHKISTGKSENKFGIPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P +++ G H+GS IT + F +A L+V + A G + +L++GG
Sbjct: 180 EVYRHAAALPG-IRITGVDMHIGSQITDLTPFDNATALLVELARDLMADGHRLTHLDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P P + + V+ + L L+ E GR L+AN LV V VK
Sbjct: 239 GLGVPYVAGDPEPPLPLHYAELVKRHTHNLGLGLVFEIGRMLVANAGILVTRVLYVKEGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D +M +LIRP+LYDA+ I V A DVVGPVCES DFL R L
Sbjct: 299 GKRFVIVDAAMNDLIRPTLYDAHHEILPVREAKSGEGQIVADVVGPVCESGDFLALGRRL 358
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
P G + V GAY ASTYN + PE V+
Sbjct: 359 PPLKAGDLVAVMTTGAYGAVQASTYNTRPLVPEVLVKG 396
>gi|359449564|ref|ZP_09239054.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20480]
gi|358044644|dbj|GAA75303.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20480]
Length = 417
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 216/387 (55%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSIAAIAQQY-GTPCYVYSRATFERHYLAFANATKNHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG D K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGSGFDIVSKGELARVIKAGGDAGKVVFSGVAKTADEIAYALKLGIKCFNVESASE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI + A P
Sbjct: 130 LERISEVACELNLVAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQQAAALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L ++G CH+GS +T+V F +A ++ ID+++ G E+ +L+IGGGLG+ Y +
Sbjct: 190 G-LNIIGVDCHIGSQLTEVKPFLEALDKLLALIDELKNVGIELSHLDIGGGLGVPYDNEQ 248
Query: 314 AVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + V L R+L LI EPGR++ AN L+ V +K N +K F ++D
Sbjct: 249 P--PHPSEYAEQVTARLENYRHLELIFEPGRAIAANAGVLITQVEFIKQNQSKFFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS D FD+VGPVCE+ DFLGK+REL +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDDTPTHNFDIVGPVCETGDFLGKDRELALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY +M+S YN + R E V
Sbjct: 366 AQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|165976954|ref|YP_001652547.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303253397|ref|ZP_07339540.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246442|ref|ZP_07528515.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307248567|ref|ZP_07530582.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307255425|ref|ZP_07537232.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259877|ref|ZP_07541591.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|165877055|gb|ABY70103.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302647742|gb|EFL77955.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306852646|gb|EFM84878.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306854917|gb|EFM87105.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306861609|gb|EFM93596.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866047|gb|EFM97921.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 416
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQ-HGTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|339327475|ref|YP_004687168.1| diaminopimelate decarboxylase LysA [Cupriavidus necator N-1]
gi|338167632|gb|AEI78687.1| diaminopimelate decarboxylase LysA [Cupriavidus necator N-1]
Length = 518
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 227/397 (57%), Gaps = 11/397 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + DG L E V + + P Y+YS+ +T +AY A +G + + YA+KA
Sbjct: 103 FFHRQDGALAVEQVPLARIAAEFGT-PTYVYSRAALTAAYQAYAAACQGRKAQVQYAMKA 161
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVF 185
N+N +L+ KLG G +VSG EL+ L AG DP K +F+G GK ++ LA A +
Sbjct: 162 NSNLAVLQVFAKLGAGFDIVSGGELKRVLAAGGDPRKVVFSGVGKSAAEMELALAHDVRC 221
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L+ + + GK+ V LRINPDVD + HPY++TG K +KFGI E +
Sbjct: 222 FNVESIPELDRLNEMAGRMGKRARVSLRINPDVDAKTHPYISTGLKGNKFGIAFEDVLPT 281
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A A P+ L++ G CH+GS IT+V+ + +A +++ ++ + G ++++++GGGL
Sbjct: 282 YRAAAALPH-LEVTGIDCHIGSQITEVEPYLEALDKVLDVVEALERDGIRLEHIDVGGGL 340
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GI Y T P T+ E V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 341 GITY--TDETPPDITGFATTLLERVAARGHGHREVLFEPGRSLVGNAGVLLTQVEFLKPG 398
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF ++D +M +L RP++Y+AY IE V +DA+ +D+VGPVCES D+LG++R
Sbjct: 399 AAKNFCIVDAAMNDLARPAMYEAYHRIEPV--VRRDAQAVTYDIVGPVCESGDWLGRDRA 456
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L G L V AGAY +M+S YN + R E V
Sbjct: 457 LAV-QPGDLLAVMSAGAYGFTMSSNYNTRPRAAEVMV 492
>gi|83944426|ref|ZP_00956880.1| diaminopimelate decarboxylase [Sulfitobacter sp. EE-36]
gi|83844749|gb|EAP82632.1| diaminopimelate decarboxylase [Sulfitobacter sp. EE-36]
Length = 421
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 216/389 (55%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L EDV + ++ V PFY+YS + R+ +A+ AL+G++ ++ YA+KAN+N
Sbjct: 8 DGALLAEDVAISEIAAAV-GTPFYVYSTATLLRHFKAFDDALDGMDHLVCYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L + G G +VS E A AG K +F+G GK + ++ LA + G+ NV+S
Sbjct: 67 VLKTLAQAGAGMDVVSAGEYLRAKAAGVPGDKIVFSGVGKTVSEIRLALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + +R K + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEVLDAVARSMDKVAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYRMAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++VG H+GS +T + F A + +++RA G + L++GGGLGI Y
Sbjct: 187 AMPG-LEVVGIDVHIGSQLTDLTPFELAYQKVAELTEQLRADGHTIRRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ A P P + V++ + + IEPGR + N +V+ V VK+ ++F++I
Sbjct: 246 RSNAAPPLPTDYGAMVQKTLGHLGCEIEIEPGRLIAGNAGLMVSEVIYVKSGEGRDFLII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP++Y+A+ I V A AE +D+VGPVCES D K+R +P G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIIPVVEAEAGAEQQPYDIVGPVCESGDTFAKQRMMPKLAAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMASEYNSRALIPEVLV 394
>gi|88705498|ref|ZP_01103208.1| Diaminopimelate decarboxylase [Congregibacter litoralis KT71]
gi|88700011|gb|EAQ97120.1| Diaminopimelate decarboxylase [Congregibacter litoralis KT71]
Length = 414
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 223/394 (56%), Gaps = 9/394 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
FS + +G L+ E++ + + E P YLYS+ + + Y AL G ++ YA+KA
Sbjct: 3 FSYR-EGRLFAEELDCETLAEEY-GTPCYLYSRAAMEAALAEYHDALSGCEHLVCYAVKA 60
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L+ L + G G +VS EL L AG DP K +F+G K E++ A + G+
Sbjct: 61 NSNLAVLDTLARQGAGFDIVSVGELERVLAAGGDPGKVVFSGVVKRREEMHRALELGIRC 120
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +LE + + GK+ V +R+NPDVD HPY++TG + +KFG+ +
Sbjct: 121 FNVESEAELEVLQEVAAALGKRAPVSVRVNPDVDAGTHPYISTGLRENKFGVATDVAMKL 180
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
L K PN + ++G CH+GS +T + ++ ++ +D + A+G + +L++GGG+
Sbjct: 181 LRHGKTLPN-IDVIGLDCHIGSQLTDMAPLLESLRQLLVMVDTLEAEGIRIHHLDLGGGI 239
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
G+ Y P + I VR+ + R L L+ EPGRS++AN L+ V K
Sbjct: 240 GVRYKDEEP--PAIADYIAAVRKALGDRKLCLVFEPGRSIVANAGVLLTRVHYTKETDAH 297
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
+F ++D +M + IRP+LY A+ +++ + AP + I +++VGPVCE+ DFLGK+R+L
Sbjct: 298 SFALVDAAMNDFIRPALYQAW--VDIQTTAPSEEPIRTWNIVGPVCETGDFLGKDRDLAL 355
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L +H AGAY M+S YN + R E +
Sbjct: 356 AP-GTLLAIHGAGAYGFVMSSNYNTRPRAAEVMI 388
>gi|387770744|ref|ZP_10126921.1| diaminopimelate decarboxylase [Pasteurella bettyae CCUG 2042]
gi|386903755|gb|EIJ68559.1| diaminopimelate decarboxylase [Pasteurella bettyae CCUG 2042]
Length = 416
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 224/385 (58%), Gaps = 8/385 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + L+ ED+ V ++ E P Y+YS+ + + +A+ A ++ +A+K+
Sbjct: 3 FFQYKNNKLFAEDLAVTELAEQF-GTPLYIYSRATLECHWKAFDSAFGEHPHLVCFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N N IL+ + KLG G +VS EL + AG DP K +F+G K +++ A + G+
Sbjct: 62 NPNIAILQVMAKLGAGFDIVSQGELERVMVAGGDPHKVVFSGVAKNAKEIARALELGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S+ +L I + GK + LRINPDVD HPY++TG K +KFGI +K +
Sbjct: 122 FNVESQAELYRINEIAGQLGKIAPISLRINPDVDAHTHPYISTGLKENKFGISVDKAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
P+ +K+ G CH+GS +T++ F DA ++ I+++ G +++L++GGGL
Sbjct: 182 YHLATKLPH-IKVTGMDCHIGSQLTEIQPFLDAVDRLMILIEQLTQDGIILEHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + E L NL +I+EPGR++ AN LV V +KTN T
Sbjct: 241 GVTY--TNETPPHPTDYAKALLEKLKHYENLEIILEPGRAISANAGILVTKVEYLKTNET 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF ++D M ++IRP+LY+AY +I + + E +DVVGP+CE++DFLGK+R+L
Sbjct: 299 RNFAIVDAGMNDMIRPALYEAYMNI-IEADRTLTRESQVYDVVGPICETSDFLGKQRQLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYN 449
+G LV AGAY SM+STYN
Sbjct: 358 IA-QGDYLVQRSAGAYGASMSSTYN 381
>gi|226938955|ref|YP_002794026.1| DcdA [Laribacter hongkongensis HLHK9]
gi|226713879|gb|ACO73017.1| DcdA [Laribacter hongkongensis HLHK9]
Length = 417
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 219/388 (56%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L ED+ + + E P Y+Y++ +T+ AY A G+ ++ YA+KAN+N ++
Sbjct: 11 LCVEDIPLARIAEQYGT-PCYVYAESALTQAYSAYSNAFAGMPHLVCYALKANSNLSVIR 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
H LG G VS E+ L AG + K +F+G GK ++ A + G+ NV+S +
Sbjct: 70 HFASLGAGFDTVSIGEIERVLAAGGEAGKIVFSGVGKSAAEMRRALEIGIHCFNVESVNE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + +R GK+ V LRINP+VD + HPY++TG KN+KFGI + + P
Sbjct: 130 LERLDTVARELGKRAPVSLRINPNVDARTHPYISTGLKNNKFGIAYDIARQSYRRAAELP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L ++G CH+GS +T DA ++ +D++ G + +++IGGGLGI Y
Sbjct: 190 N-LDVIGIDCHIGSQLTDSTPLIDALDRLLVLVDQLSEDGIRLRHVDIGGGLGIRY--AD 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + D +RE + R+L L++EPGRSL+ N L+ V +K K+F V+D +
Sbjct: 247 ETPPDLQQYADAIRERLAGRDLALLMEPGRSLVGNAGVLLTRVEYLKEGDGKHFAVVDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEI--SKFDVVGPVCESADFLGKERELPTPDRGAG 431
M +L+RPS Y A+ I V+ DAE+ + +DVVGP+CES+DFLGK+R L + G
Sbjct: 307 MNDLMRPSYYQAFHDIRPVTQ--HDAELLPALYDVVGPICESSDFLGKDRALALRE-GDL 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V +GAY +M+S YN + R E V
Sbjct: 364 IAVMSSGAYGSTMSSNYNTRPRAAEVLV 391
>gi|427426952|ref|ZP_18916997.1| Diaminopimelate decarboxylase [Caenispirillum salinarum AK4]
gi|425883653|gb|EKV32328.1| Diaminopimelate decarboxylase [Caenispirillum salinarum AK4]
Length = 425
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 155/413 (37%), Positives = 225/413 (54%), Gaps = 33/413 (7%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGY 122
H F+ + DG L+CEDV ++ + V P Y+YS +TR+ + AL+ GL++ + +
Sbjct: 2 HHFTSR-DGVLHCEDVSLETIAAEVGT-PVYVYSTATLTRHWGVFTGALKDAGLDATVCF 59
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A KAN N +L L LG GA +VSG EL +A AG + +F+G GK ++L A E
Sbjct: 60 ATKANGNVAVLRTLADLGAGADVVSGGELFVARHAGVPADRIVFSGVGKTRDELAYALDE 119
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241
G+F +NV+S+ +LE + +R G K + +RINPDV+ H + TG ++KFGI
Sbjct: 120 GIFQINVESKSELEMLDAVAREKGVKAPIAIRINPDVEAGTHEKITTGKFDNKFGI---- 175
Query: 242 LQWFLDAVKAHPNELKLVGAH--------CHLGSTITKVDIFRDAAVLMVNYIDKIRAQG 293
W +AH K G H+GS I + F A M + + +R G
Sbjct: 176 -AW----TQAHALYRKAAGMDGIAVKAIAMHIGSQIADLSPFDAAFGRMRDLLAILRRDG 230
Query: 294 FEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLN-----LIIEPGRSLIAN 348
E++ L+IGGGLG+ Y G P P D R V++RNL L++EPGR + AN
Sbjct: 231 IEIERLDIGGGLGVPYDREGD--PTPMPPADYAR--VIARNLGDLGCRLVLEPGRLITAN 286
Query: 349 TCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVV 407
L++ V K T++F++ D M +L RP++YDA+ IE V +PAP E DVV
Sbjct: 287 AGVLLSRVVHRKEGATRSFLICDAGMNDLARPAMYDAFHAIEPVRAPAPG-VENEHVDVV 345
Query: 408 GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
GP+CES+D GK+R LP G LV AGAY +M++ YN + PE V+
Sbjct: 346 GPICESSDVFGKQRALPPMQAGDLLVFRTAGAYGATMSNMYNGRPLVPEVLVK 398
>gi|431805556|ref|YP_007232457.1| diaminopimelate decarboxylase [Liberibacter crescens BT-1]
gi|430799531|gb|AGA64202.1| Diaminopimelate decarboxylase [Liberibacter crescens BT-1]
Length = 421
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 224/402 (55%), Gaps = 4/402 (0%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
K D LY ED V+++ + V PFY YS I +N A+ QA E ++ +I YA+KAN+
Sbjct: 5 KYIDNSLYMEDASVEEISKVV-GTPFYCYSTAIIKQNYHAFSQAFENMDVMICYAMKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N I++ L+ LG G +VS EL AL AG + +F+G GK ++ LA ++G++ +N
Sbjct: 64 NQAIIKTLKNLGSGLDIVSEGELHRALIAGVSAERIVFSGVGKTPHEMDLALKKGIYCLN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + + GK + R+NPD+D H ++TG K KFGI +++
Sbjct: 124 VESEAELEILNQRAISLGKVAPIAFRVNPDIDANTHKKISTGKKEDKFGIPLHRIRSIYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
K P +++ G H+GS I ++ +F +A + + +++R+ G ++++++IGGGLGI
Sbjct: 184 YAKTLPG-IQIKGIDMHIGSQINEMTVFNEAFKFLRHLTEELRSDGHKIEHIDIGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y+ L P V+E + +I EPGR L+ N L+ V VK G K+F
Sbjct: 243 SYHKNDHSL-SPIVYAKLVKEHFGDLDCRIITEPGRFLVGNAGVLITQVLYVKDTGDKHF 301
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
I+ID +M + +RP+LY A+ I+ V + + + D+VG +CES DF+ ++E+ P
Sbjct: 302 IIIDAAMNDFMRPTLYGAHHEIKPVKISSMNLKPIIADIVGAICESGDFIALDKEIEPPK 361
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY + TYN ++ PE V+ II P
Sbjct: 362 PEDLLYIETAGAYGAVQSGTYNSRLLIPEVLVKGSQFHIIRP 403
>gi|167564379|ref|ZP_02357295.1| diaminopimelate decarboxylase [Burkholderia oklahomensis EO147]
gi|167571526|ref|ZP_02364400.1| diaminopimelate decarboxylase [Burkholderia oklahomensis C6786]
Length = 423
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 226/404 (55%), Gaps = 14/404 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ E P ++YS+ +T +AY +A G + + A+KAN+N
Sbjct: 10 DGTLHAERVAAAELAERF-GTPLFVYSRAALTAAYDAYAKACAGRRASVHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRAQNVVFSGVGKSADEMRAALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI ++ + A
Sbjct: 129 TPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDEARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L +VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LDVVGIDCHIGSQITELSPYLDAIDKLLDLVEQIEADGVKIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P + V E + +R + + EPGRSL N L+ V +K K
Sbjct: 246 Y--DDETPPDIGAYVRAVLERIDARGHGHREIWFEPGRSLTGNAGILLTRVEFLKQGDEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y+A+ IE V P D + +DVVGPVCES D+LG+ER L
Sbjct: 304 NFAIVDAAMNDLARPAMYEAFHAIEPVKPR-TDIATAVYDVVGPVCESGDWLGRERSLAI 362
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 363 AP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAYLVRP 405
>gi|319789610|ref|YP_004151243.1| diaminopimelate decarboxylase [Thermovibrio ammonificans HB-1]
gi|317114112|gb|ADU96602.1| diaminopimelate decarboxylase [Thermovibrio ammonificans HB-1]
Length = 419
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/408 (35%), Positives = 213/408 (52%), Gaps = 18/408 (4%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + +G LY E++ ++ E P Y+YS + A + +A+KA
Sbjct: 9 FIELRNGELYIEELPALEIAEKF-STPAYVYSANAFRWWFNEFNSAFSQVEHTTCFAVKA 67
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L+ L +LG GA VS E+ AL AG P K +F G GK +++ A + +
Sbjct: 68 NSNVWVLKLLAELGAGADTVSAGEIHRALTAGISPKKIVFAGVGKRPDEIEFALERDILM 127
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
+NV+SE +LE + GKK + LR+NP+VDP+ HPY++TG +KFG+ E+
Sbjct: 128 INVESESELETVNRVGEKLGKKAPIALRVNPEVDPKTHPYISTGLHEAKFGVDYERAVEL 187
Query: 246 LDAVKAHPNELKLV---GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
K E+K V G H H+GS IT F +AA + + ++ + G EV+ + G
Sbjct: 188 YKKAK----EMKWVNPVGIHFHIGSQITDTSAFGEAAEKVAELVKELHSLGIEVELFDAG 243
Query: 303 GGLGIDYYHTGAVLPK---PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
GGLG++Y +P + LI V+EL LI+EPGR + AN L+ + +
Sbjct: 244 GGLGVNYNPQEPPVPSEELAKQLIPAVKEL----GCKLILEPGRRISANAGVLLTKLLYI 299
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K K F ++D M +L RP+LY AY HI V + + DVVGP+CE+ D L K
Sbjct: 300 KRRPNKTFYIVDAGMNDLARPALYGAYHHI--VPVVNKGRKTETVDVVGPICETGDILAK 357
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
RELP G L V AGAY +MAS YN + RPPE V + +I
Sbjct: 358 GRELPECSEGDILAVLSAGAYGFTMASNYNSRPRPPEILVEGSSTRVI 405
>gi|261495167|ref|ZP_05991630.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309143|gb|EEY10383.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 416
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 223/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V + D++E P Y+YS+ + R++ A+ A ++ +A+K+N+N +L
Sbjct: 11 LFAEEVAIADIIEQY-GTPAYVYSRSTLERHLHAFNNAFGSHPHLVCFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + +K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEASKVVFSGVAKSHSEIKRALEVGIRCFNIESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINQVAGELGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ ++++R G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIILMEQLREDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L NL +IIEPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYENLEIIIEPGRAITANAGILVTKVEYLKQNEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + + + +DVVGP+CE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDKT-LNRDKAVYDVVGPICETSDFLGKQRELAISE-GDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AIRSAGAYGAAMSSTYNSRPQAAEIMV 391
>gi|194290982|ref|YP_002006889.1| diaminopimelate decarboxylase [Cupriavidus taiwanensis LMG 19424]
gi|193224817|emb|CAQ70828.1| DIAMINOPIMELATE DECARBOXYLASE PROTEIN [Cupriavidus taiwanensis LMG
19424]
Length = 419
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/399 (38%), Positives = 229/399 (57%), Gaps = 13/399 (3%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
F + DG L E V + + P Y+YS+ +T +AY A G + + YA+K
Sbjct: 3 AFFHRQDGALAVEQVPLARIAAEFGT-PTYVYSRAALTAAYQAYAAACAGRKAQVQYAMK 61
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGV 184
AN+N +L+ +LG G +VSG EL+ L AG DP K +F+G GK ++ LA AQ+
Sbjct: 62 ANSNLAVLQVFARLGAGFDIVSGGELKRVLAAGGDPRKVVFSGVGKSAAEMELALAQDVR 121
Query: 185 FVNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +L+ + VA R+ GK+ V LRINPDVD + HPY++TG K +KFGI E +
Sbjct: 122 CFNVESIPELDRLNEVAGRV-GKRARVSLRINPDVDARTHPYISTGLKGNKFGIAFEDVL 180
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A A P+ L + G CH+GS IT+V+ + +A +++ ++ + +G ++++++GG
Sbjct: 181 PTYRAAAALPH-LAVTGIDCHIGSQITEVEPYLEALDKVLDVVEALEREGISLEHIDVGG 239
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVK 360
GLGI Y T P T+ E V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 240 GLGITY--TDETPPDITGFATTLLERVAARGHGHREVLFEPGRSLVGNAGVLLTQVEFLK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +L RP++Y+AY IE V A +D +D+VGPVCES D+LG++
Sbjct: 298 PGAAKNFCIVDAAMNDLARPAMYEAYHRIEPV--ALRDGAAVTYDIVGPVCESGDWLGRD 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L G L V AGAY +M+S YN + R E V
Sbjct: 356 RALAVQP-GDLLAVMSAGAYGFTMSSNYNTRPRAAEVMV 393
>gi|27376494|ref|NP_768023.1| diaminopimelate decarboxylase [Bradyrhizobium japonicum USDA 110]
gi|27349634|dbj|BAC46648.1| diaminopimelate decarboxylase [Bradyrhizobium japonicum USDA 110]
Length = 421
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 215/399 (53%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFADAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L +LG GA +VSG EL+ AL AG K +F+G GK ++L A A + + +NV+S
Sbjct: 67 VLRTLARLGAGADVVSGGELKRALAAGIPARKILFSGVGKTEDELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATEMGKTARISVRVNPDVDAGTHAKISTGKSENKFGIPIAHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G ++ +++ GGGLGI YY
Sbjct: 187 KLPG-IQVTGTDVHIGSQITDLSKMETAFRILSEFVQTLRADGHDISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ +DA DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQPARDAATMVADVVGPVCETGDYLALDRTLPTPKAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LLAIMTAGAYGAVQAGTYNTRPLVPEVLVKDDQYAVVRP 404
>gi|307257594|ref|ZP_07539354.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863897|gb|EFM95820.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 416
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQ-HGTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMVRLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|440737385|ref|ZP_20916951.1| diaminopimelate decarboxylase [Pseudomonas fluorescens BRIP34879]
gi|447918996|ref|YP_007399564.1| diaminopimelate decarboxylase [Pseudomonas poae RE*1-1-14]
gi|440382087|gb|ELQ18598.1| diaminopimelate decarboxylase [Pseudomonas fluorescens BRIP34879]
gi|445202859|gb|AGE28068.1| diaminopimelate decarboxylase [Pseudomonas poae RE*1-1-14]
Length = 415
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 220/389 (56%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I ++ L G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRSFTDPLNGVPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKIVFSGVGKSRDDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L ++G CH+GS +T + F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LDVLGVDCHIGSQLTSLPPFLDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+ + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PQIADYIQAVRERIEGRDLALLFEPGRYIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V+ P+D+E +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVT--PRDSEARAYDIVGPICETGDFLAKDRQLALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L +H AGAY M+S YN + R E V
Sbjct: 361 LLAIHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|345869295|ref|ZP_08821253.1| diaminopimelate decarboxylase [Thiorhodococcus drewsii AZ1]
gi|343923218|gb|EGV33910.1| diaminopimelate decarboxylase [Thiorhodococcus drewsii AZ1]
Length = 415
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 224/392 (57%), Gaps = 13/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ E P Y+YSK + R+ A+ +A ++ +A+K+N+N
Sbjct: 8 DGILHAEDVPLTEIAERFGT-PCYVYSKATLERHWRAFDRAFRDHPHLVCFAVKSNSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VSG EL L AG DP K +F+G GK +++ A Q G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSGGELERVLAAGGDPAKVVFSGVGKREDEIQRALQVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E +L I RIAG+ K + LR+NPDVD Q HPY++TG K +KFGI +
Sbjct: 127 ESELLRI---DRIAGELGLKAPISLRVNPDVDAQTHPYISTGLKENKFGIDIRVAESVYT 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ N +++ G CH+GS +T + F DA ++ D++ A G +++L++GGGLGI
Sbjct: 184 QAASLAN-IRICGIDCHIGSQLTDLAPFVDALDRVLLLADRLCAAGIAIEHLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P + R + R +I+EPGR++ N L+ V +K ++F
Sbjct: 243 RYRDEQPPEPAAYAAAMSYR--LAERPYEVILEPGRAIAGNAGVLLTRVEHLKHTDHRHF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY A Q I V A DAE +++D+VGPVCE+ DFLGKER LP +
Sbjct: 301 AILDAAMNDLLRPALYQANQDIVRVVGA-SDAEPARYDLVGPVCETGDFLGKERLLPL-N 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V +GAY +M+S YN + R E V
Sbjct: 359 EGDLLAVRGSGAYGFTMSSNYNSRPRVAEIMV 390
>gi|421465806|ref|ZP_15914493.1| diaminopimelate decarboxylase [Acinetobacter radioresistens
WC-A-157]
gi|400204073|gb|EJO35058.1| diaminopimelate decarboxylase [Acinetobacter radioresistens
WC-A-157]
Length = 416
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 222/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLKQLAQQF-GTPLYVYSKQAFEKHYTDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG DP K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLGVLAKLGAGFDIVTGGELARVLAAGGDPAKVVFSGLGKTEADIEKALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + G+K V LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAEKLGQKAPVSLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA ++ I+++ G ++ +++IGGGLG+
Sbjct: 184 AASLPN-LDIVGIDCHIGSQLTETKPFVDALERVMLMIEQLNGLGIQLKHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y V P + D ++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDEVPPTVQEYADALKPALQKLGLKVYMEPGRSISANAGILLTRVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V P QD + ++D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQPVEPH-QDMQEQEWDIVGAICETGDFLGKERKLALAED 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DL-LAVLGAGAYGFVMSSNYNTRARAAEVMV 389
>gi|395495582|ref|ZP_10427161.1| diaminopimelate decarboxylase [Pseudomonas sp. PAMC 25886]
Length = 415
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 216/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + P Y+YS+ I ++ ALEG S++ +A+KAN+N
Sbjct: 8 DGELFAEGVALSAIAGRF-GTPTYVYSRAHIEAQYRSFADALEGTPSLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK ED+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGKADKIVFSGVGKSREDMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ ID++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTSLPPFLDALDRLLALIDRLGECGIYLHHIDLGGGVGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLVSDYIKAVRERTEGRDLTLMFEPGRYIVANAGLLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+ E +DVVGP+CE+ DFL KER+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVK--PRAGEGRTYDVVGPICETGDFLAKERQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRTAEVLV 389
>gi|124268300|ref|YP_001022304.1| diaminopimelate decarboxylase [Methylibium petroleiphilum PM1]
gi|124261075|gb|ABM96069.1| diaminopimelate decarboxylase [Methylibium petroleiphilum PM1]
Length = 424
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 218/379 (57%), Gaps = 10/379 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + + Y++AL G +I YA+KA+++ +L+ + GCG +VSG EL
Sbjct: 33 PLYVYSRRAMLAALAPYQRALAGREHLICYAMKASSSLAVLQTFAQAGCGFDIVSGGELD 92
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
L AG DP K +F+G GK ++ A + GV NV+SE +L+ + + G+ V
Sbjct: 93 RVLAAGGDPGKVVFSGLGKTRAEMRRALEIGVRCFNVESEAELDVLSEVALSLGRVAPVS 152
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K +KFGI +++ P LK+VG CH+GS IT+
Sbjct: 153 LRVNPDVDAKTHPYISTGLKGNKFGIAHDRAVAAYRRAAQLPG-LKVVGIDCHIGSQITE 211
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+ + DAA +++ ++ I + G + +L++GGGLGI Y T P LI + +
Sbjct: 212 IAPYLDAADRVLDLVEAIESSGLRIHHLDLGGGLGIQY--TDERPPAADALIGALLARLD 269
Query: 332 SRN---LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+R L+ EPGRSL+ N L++ V +K KNF V+D +M +L+RP+LY+A
Sbjct: 270 ARGHGARTLVFEPGRSLVGNAGVLLSEVLYLKPGTHKNFCVVDAAMNDLMRPALYEATMS 329
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I V +D +DVVGPVCES D+LG++R L G + V AGAY MSMAS Y
Sbjct: 330 I--VPCRLRDGVPVVYDVVGPVCESGDWLGRDRALAL-QPGDAVAVLSAGAYGMSMASNY 386
Query: 449 NLKMRPPEYWVRSLISIII 467
N + R E V ++ +I
Sbjct: 387 NSRPRAAEVMVDGDVATLI 405
>gi|312963815|ref|ZP_07778286.1| Diaminopimelate decarboxylase [Pseudomonas fluorescens WH6]
gi|311281850|gb|EFQ60460.1| Diaminopimelate decarboxylase [Pseudomonas fluorescens WH6]
Length = 415
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 217/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + P Y+YS+ I ++ AL G+ ++ YA+KAN+N
Sbjct: 8 DGELFAEGVALSAIAQRF-GTPTYVYSRAHIEAQYRSFTDALNGIPHLVCYAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG K +F+G GK +D+ A + GV N++S
Sbjct: 67 VLNVLARLGAGFDIVSRGELERVLAAGGQADKIVFSGVGKTRDDMRRALEVGVHCFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
PN L+++G CH+GS +T + F DA ++ D++ G + ++++GGG+G+ Y
Sbjct: 187 QLPN-LEVLGVDCHIGSQLTTLPPFIDALDRLLALTDRLGDCGIYLQHIDLGGGVGVQYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLIADYIQAVRERIEGRDLTLMFEPGRYIVANAGVLLTQVEYLKHTEYKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ ++ V+P A +D+VGP+CE+ DFL K+R+L + G
Sbjct: 304 DAAMNDLIRPALYQAWMNVTAVTPRASVAR--AYDIVGPICETGDFLAKDRQLAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|117927014|ref|YP_867631.1| diaminopimelate decarboxylase [Magnetococcus marinus MC-1]
gi|117610770|gb|ABK46225.1| diaminopimelate decarboxylase [Magnetococcus marinus MC-1]
Length = 419
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 218/392 (55%), Gaps = 7/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CE+V ++ + + V PFY YS+ + +++ ++QA +S+I Y++KAN+N
Sbjct: 8 DDQLFCEEVALEQIAQAV-GTPFYCYSERTLLHHLQVFQQAFASQDSLICYSVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L+ L K G G +VSG EL R G + +F+G GK ++ A GV NV+S
Sbjct: 67 VLDALAKQGAGFDIVSGGELERVRRVGCPGERVVFSGVGKSRAEIQAALAYGVRMFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAV 249
+L+ I + V LRINPDVDP+ HPY++TG K +KFGI E + + A
Sbjct: 127 IPELQRIQEVALAMDVAAPVTLRINPDVDPKTHPYISTGLKRNKFGIPFGEAVAVYQQA- 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A + +++VG CH+GS +T++ F DA ++ I ++ G E+ L++GGGLGI
Sbjct: 186 -AQMSHVQVVGLDCHIGSQLTQLSPFVDALKRVMVLIQALKGHGIEIKNLDLGGGLGIP- 243
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
Y G P P L + E + + +I+EPGR+++ N LV V VK ++F++
Sbjct: 244 YEDGDTPPSPAELAAALLEQLDGMPVTVILEPGRAIVGNAGVLVTRVEYVKKGEQRHFVI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D M +L+RP++Y+AY H + D E DVVGP+CE+ DF ++R L +G
Sbjct: 304 TDAGMNDLLRPAIYNAY-HGVIPLQRKFDREEQVVDVVGPICETGDFFARDRYLSEVYQG 362
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY M+S YN + R E VR
Sbjct: 363 ELLAVRSAGAYGFVMSSNYNTRPRVAEVLVRG 394
>gi|46143532|ref|ZP_00204500.1| COG0019: Diaminopimelate decarboxylase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208989|ref|YP_001054214.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126097781|gb|ABN74609.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 416
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQY-GTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMRITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|357404595|ref|YP_004916519.1| diaminopimelate decarboxylase [Methylomicrobium alcaliphilum 20Z]
gi|351717260|emb|CCE22925.1| diaminopimelate decarboxylase [Methylomicrobium alcaliphilum 20Z]
Length = 419
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/398 (35%), Positives = 225/398 (56%), Gaps = 11/398 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F G L+ ED V+++ P Y+YS+ + R+ A+ + +I YA+KA
Sbjct: 3 FFNYKSGELFAEDCPVREIAAK-HGTPCYIYSRATLERHWHAFDRPFGDRPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP K +F+G GK ++++ A + G+
Sbjct: 62 NSNLAVLNILARLGSGFDIVSAGELERVLAAGGDPKKIVFSGVGKRSDEILSALKTGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
N++ +L+ I + G K V R+NPDVD + HPY++TG K +KFGI E+
Sbjct: 122 FNIEVGGELDRINELAGELGVKAPVSFRVNPDVDAKTHPYISTGLKENKFGIAIEQALLE 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A PN + ++G CH+GS +T F DA +++ +D+++ G + +L++GGGL
Sbjct: 182 YQRAAAMPN-IDIIGIDCHIGSQLTDTTPFLDALGRILDLVDELKKMGIALHHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRN----LIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GI Y P+P + L++ + + L+ ++ +++EPGR++ N LV V +KT
Sbjct: 241 GIRYRDEQP--PEPADYVEALLNRLNQSKLTDDVEILLEPGRAIAGNAGILVTQVEYLKT 298
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +LIRPSLY A+Q I V + A+ + +D+VGPVCE+ DFLGK+R
Sbjct: 299 TADKNFAIVDAAMNDLIRPSLYSAWQEIIPVR-SQSSADENHWDIVGPVCETGDFLGKDR 357
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+L L V +GAY +M+S YN + R E V
Sbjct: 358 KLRLSPEDL-LAVRSSGAYGFTMSSNYNSRPRAAEVMV 394
>gi|34556768|ref|NP_906583.1| diaminopimelate decarboxylase dap decarboxylase [Wolinella
succinogenes DSM 1740]
gi|34482482|emb|CAE09483.1| DIAMINOPIMELATE DECARBOXYLASE DAP DECARBOXYLASE [Wolinella
succinogenes]
Length = 401
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 212/369 (57%), Gaps = 15/369 (4%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y QI K+A G S+I YAIKAN+N +++HL KL GA VS E++
Sbjct: 13 PLYVYDFDQIKSQFLQLKEAFAGRKSLIAYAIKANSNLSVIQHLGKLESGADCVSIGEVK 72
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDSEFDLENIVVASRIAGKKVNVL 211
AL+AG P K IF+G GK E+++ A + E + +NV+SE +L + ++ GK +
Sbjct: 73 RALKAGIPPYKIIFSGVGKRDEEILEALSLEILMINVESEAELLRVESLAKSLGKVARIS 132
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NPD+DP+ HPY++TG +KFG+ E + L + A L VG H H+GS +T+
Sbjct: 133 IRVNPDIDPKTHPYISTGLSENKFGVDIESAKR-LYILCAKSESLHPVGIHFHIGSQLTE 191
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ ++A + + + A E+ + ++GGGLGI Y P NL D + ++
Sbjct: 192 LEPLLESAKKVADLTRSLLALKIEIKFFDVGGGLGIRYKDE-----TPINLYDYAQGILA 246
Query: 332 S---RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ ++ ++ EPGR ++ N C + V K N K F+++DG+M +L+RPSLY AY
Sbjct: 247 ALHGLDVTIVCEPGRFIVGNAGCFLTRVLYEKQNEKKRFVIVDGAMNDLLRPSLYKAYHE 306
Query: 389 IELVSPAPQDAE-ISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAST 447
+ AP+ E S+ D+VGPVCES D+L K LP + G +V+ AGAY SM+S
Sbjct: 307 ----AFAPKGGESFSEADIVGPVCESGDWLAKGVMLPPLEHGDLIVIKSAGAYGFSMSSQ 362
Query: 448 YNLKMRPPE 456
YN + R E
Sbjct: 363 YNSRARAAE 371
>gi|303250943|ref|ZP_07337133.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650215|gb|EFL80381.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 416
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQY-GTPAYIYSRATLERHWHAFDKAFGAHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMVRLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|333910270|ref|YP_004484003.1| diaminopimelate decarboxylase [Methanotorris igneus Kol 5]
gi|333750859|gb|AEF95938.1| diaminopimelate decarboxylase [Methanotorris igneus Kol 5]
Length = 436
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 220/388 (56%), Gaps = 20/388 (5%)
Query: 83 QDVMETVEK--RPFYLYSKPQITRNVEAYKQALE------GLNSIIGYAIKANNNYKILE 134
D +E EK P Y+ S+ QI RN E Y A + G I+ YA KAN N + +
Sbjct: 20 HDAVELAEKFGTPLYVMSETQIKRNYEKYVDAFKIYEKETGKEFIVAYAYKANANLAVTK 79
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L KLGCGA +VSG EL +A +G K +FNGN K E++++ + + NVDS +
Sbjct: 80 LLSKLGCGADVVSGGELYIAKLSGVPSNKIVFNGNCKTKEEIIMGIETNIRAFNVDSISE 139
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-- 251
L I ++ G+ NV RINP+VDP+ HP ++TG K +KFG+ E + A+K
Sbjct: 140 LILINETAKEMGEVANVAFRINPNVDPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMAL 198
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
+ +VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLG+ YY
Sbjct: 199 EMENVNVVGVHCHIGSQLTDISPFVEETRKVMDFVVELKKEGIEIEDVNLGGGLGVPYYK 258
Query: 312 TGAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
+ P +L D + +L NLI+EPGRSL+A L+ V +K
Sbjct: 259 DKEI-PTQYDLADAIINTMLEYQDKVEMPNLILEPGRSLVATAGVLLGKVHHIKETPVAK 317
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
+I+ID M +++RP++Y+AY E+ +D E K ++ G +CES+D +GK+REL
Sbjct: 318 WIMIDAGMNDMMRPAIYEAYH--EITPCVIRDGEKEKVNIAGGLCESSDVMGKDRELTPI 375
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRP 454
+ G + + D GAY +SMA+ YN + RP
Sbjct: 376 EVGDVVAILDVGAYGISMANNYNARGRP 403
>gi|307250800|ref|ZP_07532729.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857159|gb|EFM89286.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 416
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 223/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQ-HGTPAYIYSRATLERHWHAFDKAFGSHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGKPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK+REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQS-LSREKAVYDVVGPICETSDFLGKDRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|389875986|ref|YP_006369551.1| diaminopimelate decarboxylase [Tistrella mobilis KA081020-065]
gi|388526770|gb|AFK51967.1| diaminopimelate decarboxylase [Tistrella mobilis KA081020-065]
Length = 419
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/402 (35%), Positives = 220/402 (54%), Gaps = 11/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + V P Y+YS+ +TR+ ++ AL GL+ +I YA+KAN N
Sbjct: 8 NGILHAEDVPLTRIAAEV-GTPVYVYSRATLTRHARVFRDALAGLDPLICYAVKANGNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L G GA +VS E++ AL AG K +F+G K ++ A + G+ NV+S
Sbjct: 67 VLKLLAAEGYGADVVSAGEMKRALAAGIPAGKIVFSGVAKTDAEIRAALEAGILQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+ +L+ I + G V LRINPDVD H + TG ++KFGI ++ +D V
Sbjct: 127 DAELDAIEQVAAAMGVTARVSLRINPDVDAGTHAKITTGKADNKFGIAWDRA---ID-VY 182
Query: 251 AHPNELKLV---GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
AH L V G H+GS ++K++ F A V I +++A+G + +L++GGGLGI
Sbjct: 183 AHARRLPHVEATGIDLHIGSQLSKLEPFEAAFTRTVELIRRLKAEGHPIRHLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + P P+ + V + + +L LI EPGR ++ N +++ V VK +K F
Sbjct: 243 PY--SDETPPAPQAYAEMVHRVTGNLDLKLIFEPGRVIVGNAGLMLSEVVYVKETASKRF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D M +L+RP+LYDAY + V+ A ++VGPVCES D +ER +P
Sbjct: 301 LILDAGMNDLMRPALYDAYHEVVAVNEPAAGAPRDPVEIVGPVCESTDVFARERPMPPVA 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
RG + AGAY +M++TYN + PE V +I P
Sbjct: 361 RGDLVAFRSAGAYGATMSNTYNARELVPEVLVDGDRYAVIRP 402
>gi|340379335|ref|XP_003388182.1| PREDICTED: diaminopimelate decarboxylase-like [Amphimedon
queenslandica]
Length = 435
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 153/396 (38%), Positives = 221/396 (55%), Gaps = 11/396 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL--NSIIGYAIKAN 127
+ +G L EDV + V E P Y+YS+ YK+ALE + YA+KAN
Sbjct: 6 RLEGQLKVEDVLLSSVAEKY-GTPCYVYSRSGCETGYNEYKKALEWCPGGGRVCYAVKAN 64
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV- 186
+N IL L LG G +VS EL L AG + K +F G K ++ A + G+F
Sbjct: 65 SNLSILSLLADLGSGFEIVSVGELERVLAAGGEGQKVVFCGVCKEEHEIRRALEVGIFCF 124
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NV+SE +LE I + K + LR+NPD+DPQ HPY++TG K +KFGI ++K
Sbjct: 125 NVESEKELELIQKVAESMKKVAPISLRVNPDIDPQTHPYISTGLKENKFGIESKKAVSVY 184
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN +K+VG CH+GS I ++ +A + + +++ G +++++IGGGLG
Sbjct: 185 QKAAVLPN-VKIVGIACHIGSQILTMEPLLEAFDCITGLVQELKDLGITINHIDIGGGLG 243
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVL--SRNL-NLIIEPGRSLIANTCCLVNHVTGVKTNG 363
+ Y P P + ++ +L SR++ ++I++PGRS++A LV V +K
Sbjct: 244 V-RYSDDENPPSPSEYLSRIKSKLLEQSRDIPDIIVQPGRSIVAPAGVLVTRVNFIKETS 302
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F +ID SM +L+RPSLY AY IE V EI + DVVGPVCES DF+GK+R L
Sbjct: 303 NKSFAIIDASMTDLLRPSLYGAYHKIEPVDYDENKTEI-ECDVVGPVCESGDFIGKKRRL 361
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G +VV+ AGAY M+S YN + RP E V
Sbjct: 362 RIID-GDLIVVYGAGAYGHCMSSNYNSRNRPAEVLV 396
>gi|383458440|ref|YP_005372429.1| diaminopimelate decarboxylase [Corallococcus coralloides DSM 2259]
gi|380733269|gb|AFE09271.1| diaminopimelate decarboxylase [Corallococcus coralloides DSM 2259]
Length = 413
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 215/390 (55%), Gaps = 11/390 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + V P Y+YS +T +A +A +G +I Y++KAN+N I
Sbjct: 9 GVLHAEQVPLPAIADAVGT-PTYVYSTAALTERFQAVTEAFQGQKHLICYSVKANSNLAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L +LG G +VSG EL +AG +P + +F G GK +++ A +G+ + NV+S
Sbjct: 68 LGLFARLGSGFDIVSGGELARVKQAGGEPGRTVFAGVGKTPDEMAQALSQGLLLFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + R G++ LR+NPDVD + H Y++TG K SKFG+ E + + A K
Sbjct: 128 EELEALDAVGRKLGRRAPFALRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYAKAKK 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
L+ +G CH+GS +T+ + A + + ++A+G ++YL++GGGLGI Y
Sbjct: 188 M--KGLQALGLDCHIGSQLTRTAPMKAALTKVADLYVTLKARGHALEYLDVGGGLGITY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P+ TV L++EPGR+L+ N L+ V K + F+V+
Sbjct: 245 -SDETPPSPQEYARTVLNATEGTGATLLLEPGRALVGNAGVLLTRVLYRKPTEARTFVVV 303
Query: 371 DGSMAELIRPSLYDAYQHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D M +L+RP+LY+A+ ++ +V +D E+ DVVGPVCES D L + R L P +
Sbjct: 304 DAGMNDLMRPALYEAHHDLQPVVKRRGRDVEV---DVVGPVCESTDVLARARPLVLPRQD 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY MSMASTYN + RP E V
Sbjct: 361 DLYAFMSAGAYGMSMASTYNSRPRPAEVLV 390
>gi|407789717|ref|ZP_11136816.1| diaminopimelate decarboxylase [Gallaecimonas xiamenensis 3-C-1]
gi|407205924|gb|EKE75887.1| diaminopimelate decarboxylase [Gallaecimonas xiamenensis 3-C-1]
Length = 416
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/394 (36%), Positives = 225/394 (57%), Gaps = 9/394 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L ED V D+ + P YLYS+ I + +A+ L+G +I +A+KAN+N +L
Sbjct: 10 LMLEDAAVADLADQF-GTPLYLYSRAAIEQAYQAFASPLKGRKHLICFAVKANSNLAVLN 68
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL L AG DP K +F+G GK ++ A + G+ NV+S +
Sbjct: 69 LLARLGAGFDIVSGGELARVLAAGGDPAKVVFSGVGKTRSEMAQALKAGIHCFNVESVAE 128
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ + + G + +R+NPDVD + HPY+ATG K +KFGI + P
Sbjct: 129 LDRLNGVAGELGLVAPISIRVNPDVDAKTHPYIATGLKENKFGIDILMAPDAFRKAASLP 188
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N LK++G CH+GS +T+ + F A ++ ++++A G E+ +++IGGGLG+ Y T
Sbjct: 189 N-LKVLGVDCHIGSQLTETEPFVAALKRLLALREQLQADGIELAHIDIGGGLGVTY--TD 245
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
PKP + + + L+ + L L++EPGR+L+AN LV V K NG K F+++D
Sbjct: 246 EQPPKPADYLAEILPLIPA-GLTLVLEPGRALVANAGLLVGRVEMTKDNGFKRFVILDTG 304
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L+RP+LY A + ++ A Q+ +S D+VGPVCE+ D+L K+ L + G +
Sbjct: 305 MNDLMRPTLYQAVMPVLPINQAQQNGPLS--DLVGPVCETGDWLAKDVPLGA-EEGDLVA 361
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY M+S YN + R E V+ +++I
Sbjct: 362 IGGAGAYGFVMSSQYNSRPRAAEVMVQGSQAVLI 395
>gi|288941801|ref|YP_003444041.1| diaminopimelate decarboxylase [Allochromatium vinosum DSM 180]
gi|288897173|gb|ADC63009.1| diaminopimelate decarboxylase [Allochromatium vinosum DSM 180]
Length = 423
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 226/392 (57%), Gaps = 13/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + ++ E P Y+YS+ + R+ A+++A +I +++K+N+N
Sbjct: 8 DGLLHAEEVPLTEIAERF-GTPCYVYSRATLERHWRAFERAFRDHPHLICFSVKSNSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L AG DP + +F+G GK +++ A + G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSVGELERVLAAGGDPARVVFSGVGKRADEIRRALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E +L I RIAG+ + V LR+NPDVDPQ H Y++TG K +KFGI ++ +
Sbjct: 127 ESELTRI---DRIAGELGVRAPVSLRVNPDVDPQTHHYISTGLKENKFGIDIQEAESVYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A PN LK+VG CH+GS +T + F DA ++ D++ A G +++L++GGGLGI
Sbjct: 184 LAAAMPN-LKVVGIDCHIGSQLTDLAPFIDALGRVLALADRLCASGIAIEHLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P + L+ R +I+EPGR+++ N L+ V +K K+F
Sbjct: 243 RYREEHPPEPA--AYAAAMSHLLADRPYEVILEPGRAIVGNAGVLLTQVEYLKHGPHKHF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY A I V DA+ S++D+VGPVCE+ DFLGK+R L +
Sbjct: 301 AILDAAMNDLLRPALYQAGHEIVRVV-QETDADPSRYDLVGPVCETGDFLGKDRTLAL-E 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G + V AGAY +M+S YN + R E V
Sbjct: 359 EGDLVAVRGAGAYGFTMSSNYNSRPRAAEVMV 390
>gi|52550218|gb|AAU84067.1| diaminopimelate decarboxylase [uncultured archaeon GZfos36D8]
Length = 425
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 214/387 (55%), Gaps = 14/387 (3%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLN--SIIGYAIKANNNYKILEHLRKL 139
DV+E E+ P Y+ + ++ N ++YK A E N + I YA+KAN N +L+ L
Sbjct: 14 DVVELAERYGTPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASE 73
Query: 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVV 199
G GA + S EL L AG K +FNGN K +DL A + GV V+VDS +L +
Sbjct: 74 GAGADVFSAGELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSA 133
Query: 200 ASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLV 259
+ G++V + +R+NPDV P VH +ATG K SKFGI + + + PN L L
Sbjct: 134 VANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEEAEKLPNVL-LA 192
Query: 260 GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH-TGAVLPK 318
G HCH+GS I + +F +A M+ ++++ +G ++ ++++GGGLGI Y A P
Sbjct: 193 GLHCHIGSQILDITVFGEATEKMMALVERVYERGMQLKFVDLGGGLGIGYRQEEKATAPT 252
Query: 319 PRNLIDTVRELV------LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P +L + + L L +L L++EPGRS++ + L++ V VK KNF+ ID
Sbjct: 253 PEDLAEMILPLFENKIRDLGISLKLVLEPGRSIVGASTILLSRVNAVK-RANKNFVAIDA 311
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
LIRP +YDAY + + + + A + VVG VCES D + K+R LP +RG +
Sbjct: 312 GFNLLIRPVMYDAYHEVVVANKVNERAS-ELYTVVGNVCESGDIMAKDRMLPKVERGDLV 370
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ D GAY SM+S YN + R E V
Sbjct: 371 AILDTGAYGFSMSSQYNGRPRCAEVLV 397
>gi|328954155|ref|YP_004371489.1| diaminopimelate decarboxylase [Desulfobacca acetoxidans DSM 11109]
gi|328454479|gb|AEB10308.1| diaminopimelate decarboxylase [Desulfobacca acetoxidans DSM 11109]
Length = 420
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 217/390 (55%), Gaps = 7/390 (1%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
++G LYCE V + PFYLYS + + + + +A ++ +A+K+N+N
Sbjct: 7 SNGQLYCEGV-AVAAIAAKVGTPFYLYSHATLQHHFQVFDRAFGETPHLVCFAVKSNSNL 65
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVD 189
IL G G +VSG EL ALRAG P K +++G GK +++ A ++G+ + N++
Sbjct: 66 AILRIFINQGGGVDIVSGGELFRALRAGVAPGKVVYSGVGKRPDEIRYALEQGILMFNIE 125
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
S +L+ + A+ G++ + LR+NPDVDPQ HPY++TG K +KFGI ++
Sbjct: 126 SPQELQVLNQAAGQMGRRARIALRVNPDVDPQTHPYISTGLKQNKFGIDIDRSVAEYLIA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
K P+ L++VG CH+GS +T++ F + + I ++R + ++ YL+IGGGLGI Y
Sbjct: 186 KQLPH-LEIVGVACHIGSQLTQLSPFIETLGRLKELIARLRREDIQIRYLDIGGGLGIQY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P P ++ + + + LI+EPGR L+ N LV V K K FI+
Sbjct: 245 --NEETPPHPVEYGRSIIQELQGLDCTLILEPGRVLVGNAGILVTKVLFTKQTEAKYFII 302
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +L RPSLY +Y I+ V +D +VGP+CES DFL K+R +P D G
Sbjct: 303 ADAAMNDLARPSLYGSYHGIQPV--VEKDRREVTASLVGPICESGDFLAKDRLMPAFDPG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ V AGAY +M+S YN + R PE V
Sbjct: 361 ELVAVMSAGAYGFTMSSNYNSRPRVPEILV 390
>gi|403052640|ref|ZP_10907124.1| diaminopimelate decarboxylase [Acinetobacter bereziniae LMG 1003]
Length = 414
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L+ E + D + P Y+YSK ++ +A ++ I +A+K+N+N
Sbjct: 5 RIDGVLHAEQCSL-DQLAMQYGTPLYVYSKATFEKHYLDMDKAFSFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLGCG +V+G EL L AG DP+K +F+G GK ED+ A + G+ NV
Sbjct: 64 LAVLNVLAKLGCGFDIVTGGELARVLAAGGDPSKIVFSGLGKQEEDIQKALEVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ G+K + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQNVAARL-GQKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDVVFETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L +VG CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LDVVGIDCHIGSQLTETQPFVDALDRIMMMIEQLKTLGIHLQHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P +++R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 TY--KDETPPSVVEYAESMRPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTQHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRPSLY+A+ I+ V + D E +D+VG +CE+ DFLGK REL +
Sbjct: 300 AIIDAAMNDLIRPSLYEAWMDIQPVK-SRTDVENKTWDIVGAICETGDFLGKARELALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDH-LAVLGAGAYGFVMSSNYNSRGRAAEVMVDGEQSHVI 397
>gi|254360888|ref|ZP_04977034.1| diaminopimelate decarboxylase [Mannheimia haemolytica PHL213]
gi|261493013|ref|ZP_05989555.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|452744889|ref|ZP_21944729.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype 6
str. H23]
gi|153092367|gb|EDN73430.1| diaminopimelate decarboxylase [Mannheimia haemolytica PHL213]
gi|261311357|gb|EEY12518.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|452087131|gb|EME03514.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype 6
str. H23]
Length = 416
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 222/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E+V + D++E P Y+YS+ + R+ A+ A ++ +A+K+N+N +L
Sbjct: 11 LFAEEVAIADIIEQY-GTPAYVYSRSTLERHWHAFNNAFGSHPHLVCFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + +K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEASKVVFSGVAKSHSEIKRALEVGIRCFNIESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K P
Sbjct: 130 LHRINQVAGELGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ ++++R G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIILMEQLREDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L NL +IIEPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYENLEIIIEPGRAITANAGILVTKVEYLKQNEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + + + +DVVGP+CE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDKT-LNRDKAVYDVVGPICETSDFLGKQRELAISE-GDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AIRSAGAYGAAMSSTYNSRPQAAEIMV 391
>gi|325266603|ref|ZP_08133280.1| diaminopimelate decarboxylase [Kingella denitrificans ATCC 33394]
gi|324982046|gb|EGC17681.1| diaminopimelate decarboxylase [Kingella denitrificans ATCC 33394]
Length = 407
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 213/375 (56%), Gaps = 20/375 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ ++T+ Y+ A LN +I YA+KAN+N I+ H +LG G VSG E+
Sbjct: 19 PLYVYSENELTQAYARYQTAFVALNPLICYAVKANSNLSIIRHFARLGSGFDTVSGGEIA 78
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
L AG K IF+G GK ++ A G+ NV+S +L+ I ++ GK V
Sbjct: 79 RVLAAGGSADKIIFSGVGKSEVEIEFALNAGIKCFNVESLPELDRINAVAQRLGKTAPVS 138
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
LRINPDVD + HPY++TG K +KFGI + Q + A H L++VG CH+GS +
Sbjct: 139 LRINPDVDAKTHPYISTGLKANKFGIAMADAEQAYRHAGSLH--HLRIVGIDCHIGSQLM 196
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
+ +A ++ D++ QG ++++++GGG+GI Y + + P V+ L+
Sbjct: 197 DLSPLIEACERLLQLTDRLAGQGIVLEHIDLGGGIGIAYQNEQS--PDLAAYAAAVQTLL 254
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
R +L++EPGRSL+ N L+ V VK KNF+++D +M +L+RP+LY AY +IE
Sbjct: 255 AGRPQSLVLEPGRSLVGNAGTLLTRVEYVKRGEEKNFVIVDAAMNDLMRPALYQAYHNIE 314
Query: 391 LVSPAPQDAEISK------FDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSM 444
+AE S+ D+VGP+CE+ DFL ++R + + G L+V AGAY SM
Sbjct: 315 -------NAETSERQPVFLADIVGPICETGDFLARDR-MISAQAGDLLLVRSAGAYASSM 366
Query: 445 ASTYNLKMRPPEYWV 459
AS YN + R E V
Sbjct: 367 ASNYNTRGRAAEVLV 381
>gi|386813819|ref|ZP_10101043.1| diaminopimelate decarboxylase [planctomycete KSU-1]
gi|386403316|dbj|GAB63924.1| diaminopimelate decarboxylase [planctomycete KSU-1]
Length = 433
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 222/402 (55%), Gaps = 18/402 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CE V++++++ V P Y+YSK I K A + N++I +++K+N+N
Sbjct: 13 DKSLFCEKVKIENIISKV-GTPAYIYSKNAILTRYRELKSAFQNANTLICFSVKSNSNLS 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
I + L + G G +VSG EL A+R+G D +K +F G GK +++ A +F+ NV+S
Sbjct: 72 ICKILAEEGSGFDVVSGGELFRAMRSGGDLSKIVFAGVGKTDKEIRYALGNDIFMFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE+I + GK V LRINPD+D + H TG K +KFGI + + +
Sbjct: 132 VSELEHINTLAGEMGKIPKVALRINPDIDAKTHVKTTTGKKENKFGIDLTEAEKIIRQST 191
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ N + L G H HLGS I V + A +V ++ + + GF+++Y+NIGGG I Y
Sbjct: 192 KYVN-INLCGLHVHLGSPIYTVAPYVHALKKIVAFVRRCKDAGFDIEYMNIGGGYCISY- 249
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK-TNGTKNFIV 369
TG + +P+ + V NLI+EPGR ++ N+ L+ VT K T K FI+
Sbjct: 250 -TGEKVIRPKEYASKILPFVKEMQCNLIMEPGRFIVGNSGILITRVTYTKETLHGKKFII 308
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPA--------PQDAEISK----FDVVGPVCESADFL 417
D +M +LIRP+LYDA+ I V+P P EI K D+VGPVCE++D
Sbjct: 309 CDAAMNDLIRPALYDAFHRIWPVNPRVKMPKVEIPNKPEIKKGMYFVDIVGPVCETSDAF 368
Query: 418 GKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+R LP + G L + AGAY +M+S+YN + RP E V
Sbjct: 369 ATKRALPKVEEGDLLAIFSAGAYGFTMSSSYNSRPRPCEVLV 410
>gi|429331016|ref|ZP_19211790.1| diaminopimelate decarboxylase [Pseudomonas putida CSV86]
gi|428764343|gb|EKX86484.1| diaminopimelate decarboxylase [Pseudomonas putida CSV86]
Length = 415
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/389 (37%), Positives = 215/389 (55%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + E P Y+YS+ I +Y AL+G + ++ +A+KAN+N
Sbjct: 8 DGELFAEGVGLSVLAERFGT-PTYVYSRAHIEAQYRSYTDALQGTSHLVCFAVKANSNLG 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VSG EL L AG + +F+G GK D+ A + GV NV+S
Sbjct: 67 VLNVLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTRADMRRALEVGVHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + G + V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 127 TEELERLAQVAAEMGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEEVYIRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ L +VG CH+GS +T ++ F DA ++ +D++ G + +L++GGGLG+ Y
Sbjct: 187 QLPS-LDVVGVDCHIGSQLTSLEPFLDALDRILMLVDRLGDCGILLQHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLGDRDLALVFEPGRHIVANAGVLLTRVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ I V P+ E +DVVGP+CE+ DFL K+R L + G
Sbjct: 304 DAAMNDLIRPALYQAWMDISAVR--PRAGEPRHYDVVGPICETGDFLAKDRALNLAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 361 LLAVRSAGAYGFVMSSNYNTRGRCAEVLV 389
>gi|89052972|ref|YP_508423.1| diaminopimelate decarboxylase [Jannaschia sp. CCS1]
gi|88862521|gb|ABD53398.1| diaminopimelate decarboxylase [Jannaschia sp. CCS1]
Length = 421
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 220/399 (55%), Gaps = 7/399 (1%)
Query: 63 VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGY 122
++H K +G L+ EDV V D+ +V PFY+YS +TR+ + +++AL G++ +I +
Sbjct: 1 MDHFLYK--NGALHAEDVPVADIAASV-GTPFYVYSTATLTRHFQLFEEALGGMDHLICF 57
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+K+N+N +L H+ LG G +VSG E A AG K +F+G GK +++ LA
Sbjct: 58 AVKSNSNQAVLSHMAMLGAGMDVVSGGEYLRAKAAGVPGDKIVFSGIGKTEDEMRLALNG 117
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241
G+ NV+SE ++ + + G V + +R+NPDVD + H +ATG K KFGI +
Sbjct: 118 GIRQFNVESEPEMHRLSRVATALGVTVPITVRVNPDVDAKTHAKIATGRKEDKFGIPIAR 177
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
+ + P L+++G H+GS +T ++ F A + +++R G + L++
Sbjct: 178 AREVYALAASLPG-LQVIGIDVHIGSQLTDLEPFEIAYAKVAELTEQLREDGHTITRLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y + + P P + ++ V + IEPGR + N LV VK
Sbjct: 237 GGGLGIPYERSNSAPPLPIEYGEVIKRTVGHLGCEIEIEPGRLISGNAGLLVASTIYVKH 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
++F+++D +M +LIRP++Y AY I +V PAP AE S +D+VGPVCES D K+
Sbjct: 297 GEDRDFLILDAAMNDLIRPAMYGAYHDIIPVVEPAP-GAEQSPYDIVGPVCESGDTFAKQ 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R+LP + AGAY M+S YN + PE V
Sbjct: 356 RDLPPVKEADLIAFRSAGAYGAVMSSEYNTRPLIPEVLV 394
>gi|52549770|gb|AAU83619.1| diaminopimelate decarboxylase [uncultured archaeon GZfos32E4]
Length = 425
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 214/387 (55%), Gaps = 14/387 (3%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLN--SIIGYAIKANNNYKILEHLRKL 139
DV+E E+ P Y+ + ++ N ++YK A E N + I YA+KAN N +L+ L
Sbjct: 14 DVVELAERYGTPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASE 73
Query: 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVV 199
G GA + S EL L AG K +FNGN K +DL A + GV V+VDS +L +
Sbjct: 74 GAGADVFSAGELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSA 133
Query: 200 ASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLV 259
+ G++V + +R+NPDV P VH +ATG K SKFGI + + + PN L L
Sbjct: 134 VANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEEAEKLPNVL-LA 192
Query: 260 GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH-TGAVLPK 318
G HCH+GS I + +F +A M+ ++++ +G ++ ++++GGGLGI Y A P
Sbjct: 193 GLHCHIGSQILDISVFGEATEKMMALVERMYERGMKLKFVDLGGGLGIGYRQEEKATAPT 252
Query: 319 PRNLIDTVRELV------LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P +L + + L L +L L++EPGRS++ + L++ V VK KNF+ ID
Sbjct: 253 PEDLAEMILPLFENKIRDLGISLKLVLEPGRSIVGASTILLSRVNAVK-RANKNFVAIDA 311
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
LIRP +YDAY + + + + A + VVG VCES D + K+R LP +RG +
Sbjct: 312 GFNLLIRPVMYDAYHEVVVANKVNERAS-ELYTVVGNVCESGDIMAKDRMLPKVERGDLV 370
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ D GAY SM+S YN + R E V
Sbjct: 371 AILDTGAYGFSMSSQYNGRPRCAEVLV 397
>gi|150400645|ref|YP_001324411.1| diaminopimelate decarboxylase [Methanococcus aeolicus Nankai-3]
gi|150013348|gb|ABR55799.1| diaminopimelate decarboxylase [Methanococcus aeolicus Nankai-3]
Length = 435
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 224/398 (56%), Gaps = 30/398 (7%)
Query: 70 KADGFLYCEDVRVQDVMETVEKR--PFYLYSKPQITRNVEAYKQALE------GLNSIIG 121
K DGF DV E E+ P Y+ S+ QI +N Y +A + G I+
Sbjct: 16 KIDGF---------DVSELAEQHGTPLYVMSESQIVKNFTRYTEAFKEYSEKTGKEFIVS 66
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
YA KAN+N +L+ L LGCGA +VSG EL A D +K +FNGN KL E++++ +
Sbjct: 67 YAYKANSNLAVLKILTNLGCGADVVSGGELYTAKMVSVDSSKIVFNGNCKLEEEIIMGIE 126
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+ NVDS +LE I + GK NV RINP+V+P+ HP ++TG K++KFG+ E
Sbjct: 127 TNIRAFNVDSISELELINEVAGKLGKVANVAFRINPNVNPKTHPKISTGLKSNKFGLDVE 186
Query: 241 KLQWFLDAVK--AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
L A+K +K+VG HCH+GS +T + F + +++++ ++ QG +++
Sbjct: 187 A-GIALKAIKMAKEMKNVKIVGIHCHIGSQLTDISPFVEETKKVMDFVVSLKEQGIKIED 245
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNL----IDTVRELVLSRNL-NLIIEPGRSLIANTCCLV 353
+NIGGGLG+ Y +P ++L I+T+ E L NLIIEPGRSL+A L+
Sbjct: 246 VNIGGGLGVP-YDKNTEIPVQKDLANAVINTMLEYADKVELPNLIIEPGRSLVATAGVLL 304
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
V +K + +I+ID M +++RP++Y+AY I +P E ++ G +CES
Sbjct: 305 GKVHHIKETPSAKWIMIDAGMNDMMRPAIYEAYHEI---TPCTIRDEKEVVNIAGGLCES 361
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+D GKERELP + + + D GAY +SMA+ YN +
Sbjct: 362 SDVFGKERELPKIEVKDTIAILDVGAYGISMANNYNAR 399
>gi|445421661|ref|ZP_21436043.1| diaminopimelate decarboxylase [Acinetobacter sp. WC-743]
gi|444757289|gb|ELW81816.1| diaminopimelate decarboxylase [Acinetobacter sp. WC-743]
Length = 414
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ DG L+ E + D + P Y+YSK ++ +A ++ I +A+K+N+N
Sbjct: 5 RIDGVLHAEQCSL-DQLAMQYGTPLYVYSKATFEKHYLDMDKAFSFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLGCG +V+G EL L AG DP+K +F+G GK ED+ A + G+ NV
Sbjct: 64 LAVLNVLAKLGCGFDIVTGGELARVLAAGGDPSKIVFSGLGKQEEDIQKALEVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I +A+R+ G+K + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQNIAARL-GQKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDVVFETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L +VG CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LDVVGIDCHIGSQLTETQPFVDALDRIMMMIEQLKTLGIHLQHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P +++R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 TY--KDETPPSVVEYAESMRPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTQHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRPSLY+A+ I+ V + D E +D+VG +CE+ DFLGK REL +
Sbjct: 300 AIIDAAMNDLIRPSLYEAWMDIQPVK-SRTDVENKTWDIVGAICETGDFLGKARELALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDH-LAVLGAGAYGFVMSSNYNSRGRAAEVMVDGEQSHVI 397
>gi|119943834|ref|YP_941514.1| diaminopimelate decarboxylase [Psychromonas ingrahamii 37]
gi|119862438|gb|ABM01915.1| diaminopimelate decarboxylase [Psychromonas ingrahamii 37]
Length = 421
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 233/407 (57%), Gaps = 13/407 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E + V+ V++ P Y+YS+ I R+ +A+ A +I YA+KA
Sbjct: 4 FNYQNDGRLFVEGLPVEQVVKKT-GTPAYIYSRATIERHWQAFDSAAGKHPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L + ++G G +VS EL ++AG DP K +F+G GK ++ A Q +
Sbjct: 63 NSNLAVLNLMARMGSGFDIVSVGELMRVIQAGGDPKKIVFSGVGKTEIEISAALQANIMC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L I ++ K + +RINP++D HPY++TG K +KFGI E+
Sbjct: 123 FNVESISELYRINSVAKALNVKAPISIRINPNIDAGTHPYISTGLKENKFGIEIEQA--- 179
Query: 246 LDAVKAHPNE--LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
LD K + L++ G CH+GS +T++ F +A ++ ID + +G + +L++GG
Sbjct: 180 LDVYKIASDLEFLEIKGVDCHIGSQLTEIAPFIEALDKLLILIDLLAEKGITISHLDLGG 239
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLG+ Y P+P + + + R+L LI EPGR+++AN LV V +K N
Sbjct: 240 GLGVPY--DDETPPEPAEYMTAIINRMAGRSLKLIFEPGRAIMANAGVLVTKVEFLKLND 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAE---ISKFDVVGPVCESADFLGKE 420
KNF ++D +M +LIRP+LY A+Q+I ++ QD + + +D+VGP+CE+ DFLGKE
Sbjct: 298 YKNFAIVDAAMNDLIRPALYSAWQNIIPLNTDYQDGQDRPVRSYDIVGPICETGDFLGKE 357
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
R+L + G LV+ GAY +M+S YN + R E V + I+
Sbjct: 358 RQLALAE-GDYLVIRSTGAYGSTMSSNYNSRCRAAEILVDGEKAFIV 403
>gi|398853474|ref|ZP_10610075.1| diaminopimelate decarboxylase [Pseudomonas sp. GM80]
gi|398239709|gb|EJN25414.1| diaminopimelate decarboxylase [Pseudomonas sp. GM80]
Length = 415
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 223/389 (57%), Gaps = 10/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG P K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSPEKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI + ++ A
Sbjct: 128 DELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA-- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
AH L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 186 AHLPNLEVVGVDCHIGSQLTTLPPFLDALDRLLDLVDRLGDCGIHLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLNGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+ K+D+VGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVK--PRDSAARKYDIVGPICETGDFLAKDRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|255320350|ref|ZP_05361534.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SK82]
gi|262379367|ref|ZP_06072523.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SH164]
gi|255302545|gb|EET81778.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SK82]
gi|262298824|gb|EEY86737.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SH164]
Length = 416
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 222/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLKQLAQQF-GTPLYVYSKQAFEKHYTDMDRAFNFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG DP K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLGVLAKLGAGFDIVTGGELARVLAAGGDPAKVVFSGLGKTEIDIEKALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I ++ G+K V LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAKKLGQKAPVSLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA ++ I+++ G ++ +++IGGGLG+
Sbjct: 184 AASLPN-LNIVGIDCHIGSQLTETKPFVDALERVMLMIEQLNELGIQLKHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y V P + D ++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDEVPPTVQEYADALKPALQKLGLKVYMEPGRSISANAGILLTRVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V P QD + ++D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQPVEPH-QDIQEKEWDIVGAICETGDFLGKERKLALAEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DL-LAVLGAGAYGFVMSSNYNTRARAAEVMV 389
>gi|76810164|ref|YP_335101.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1710b]
gi|167740511|ref|ZP_02413285.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 14]
gi|167904581|ref|ZP_02491786.1| diaminopimelate decarboxylase [Burkholderia pseudomallei NCTC
13177]
gi|167912845|ref|ZP_02499936.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 112]
gi|254190340|ref|ZP_04896848.1| diaminopimelate decarboxylase [Burkholderia pseudomallei Pasteur
52237]
gi|254258974|ref|ZP_04950028.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1710a]
gi|76579617|gb|ABA49092.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1710b]
gi|157938016|gb|EDO93686.1| diaminopimelate decarboxylase [Burkholderia pseudomallei Pasteur
52237]
gi|254217663|gb|EET07047.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1710a]
Length = 423
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V D+ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSTIDLAERFGT-PLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 SLAIAP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|237814107|ref|YP_002898558.1| diaminopimelate decarboxylase [Burkholderia pseudomallei MSHR346]
gi|237505838|gb|ACQ98156.1| diaminopimelate decarboxylase [Burkholderia pseudomallei MSHR346]
Length = 423
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSTVELAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAAQPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 SLAIAP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|145630464|ref|ZP_01786244.1| diaminopimelate decarboxylase [Haemophilus influenzae R3021]
gi|144983854|gb|EDJ91296.1| diaminopimelate decarboxylase [Haemophilus influenzae R3021]
Length = 415
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 228/395 (57%), Gaps = 8/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E + P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQFDT-PLYVYSRATLERHWHAFDSAFGKRPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K+N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF + D M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELS 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G + AGAY SM+S YN + R E V
Sbjct: 358 IAE-GDYIAQCSAGAYGASMSSNYNSRARTAEVLV 391
>gi|251793705|ref|YP_003008435.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus NJ8700]
gi|422337699|ref|ZP_16418669.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus F0387]
gi|247535102|gb|ACS98348.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus NJ8700]
gi|353345031|gb|EHB89329.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus F0387]
Length = 416
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 222/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A+ +A ++ YA+K+N N IL
Sbjct: 11 LMAENLPVKQLAEQF-GTPLYIYSKATLERHWYAFDKAFGEHPHLVCYAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG +P K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLVAGGNPAKVVFSGVAKSEPEITRALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I +R GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINEVARRLGKTAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLAATLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAVDRLIVLMEQLKQDGIALKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLNAFSELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L +G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIA-QGDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSHPRTAEVMV 391
>gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040048|gb|ACT56844.1| diaminopimelate decarboxylase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 431
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/403 (33%), Positives = 222/403 (55%), Gaps = 6/403 (1%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
K +G L+ E+V ++ + V+ PFY YS I +N + A +G+++++ YA+KAN+
Sbjct: 5 KYFEGSLHAENVSLEKLAHVVQT-PFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS 63
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
N +++ L LG G +VS ELR AL A + +F+G GK ++++ LA Q G++ N
Sbjct: 64 NQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFN 123
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +L+ + + GKK + R+NPD++ H ++TG K KFGI ++
Sbjct: 124 VESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
P +K+ G H+GS I +++ F A L+ + ++R+ G + ++++GGGLGI
Sbjct: 184 YASTLPG-VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y H+ P + + + + +I+EPGR L+A+ LV V +K + K F
Sbjct: 243 AY-HSDHRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTF 301
Query: 368 IVIDGSMAELIRPSLYDAYQHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
+++D +M + +RP+LYDAY I +V+PA I D+VGP+CE+ DF+ R++ P
Sbjct: 302 VILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHA-DIVGPICETGDFIALNRKIALP 360
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L + GAY + TYN ++ PE V II P
Sbjct: 361 RPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRP 403
>gi|171910232|ref|ZP_02925702.1| diaminopimelate decarboxylase [Verrucomicrobium spinosum DSM 4136]
Length = 433
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 221/400 (55%), Gaps = 19/400 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + G L+CE+V ++ + P Y+YSK IT + + AL+ L+ +I YA+
Sbjct: 2 HSF-RYIQGRLHCENVDLES-LSAKHGTPLYVYSKETITDHYKRLDGALDRLDHLICYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL+ + LG G +VSG EL ++AG ++C F G GK ++ A Q+G+
Sbjct: 60 KANSNLAILQTIADLGGGFDIVSGGELYRVIQAGGRASQCTFAGVGKTRAEIEYALQQGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ N +SE +L I + GKK V LR+NP+VD + H Y++TG +KFG+ +++
Sbjct: 120 YSFNAESEAELRQINEVAGTLGKKAPVALRVNPNVDAKTHKYISTGKSENKFGVDFDRIL 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A+ L + G H+GS +T +D F +AA + ++K++ + + + +IGG
Sbjct: 180 DAYAAIATECEHLDIRGLQMHIGSQLTSIDPFVEAAKKVAPLVEKLKER-HHIKFFSIGG 238
Query: 304 GLGIDYYHT---------GAVLPKPRNLI-----DTVRELVLSRNLNLIIEPGRSLIANT 349
GLGI Y + G R L D + ++ L +++EPGR ++ N
Sbjct: 239 GLGIVYRESLDSGDQTWWGEKEEAERPLTIQSYADALVPILEPLKLRILLEPGRFMVGNA 298
Query: 350 CCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGP 409
L++ V +K K F+++D M +LIRP+LY+ + I + A + AE+ K DVVGP
Sbjct: 299 GALLSKVLYLKKGNAKKFVIVDAGMNDLIRPALYEGWHQITPLHKA-EGAELEKVDVVGP 357
Query: 410 VCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
+CE+ DFL ++RELP G L V AGAY +MAS YN
Sbjct: 358 ICETGDFLAQDRELPPVQAGDTLAVLSAGAYGFTMASNYN 397
>gi|421854743|ref|ZP_16287128.1| diaminopimelate decarboxylase [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|403189758|dbj|GAB73329.1| diaminopimelate decarboxylase [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 416
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLKQLAQQF-GTPLYVYSKQAFEKHYTDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L G DP K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLGVLAKLGAGFDIVTGGELARVLAVGGDPAKVVFSGLGKTEADIEKALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + G+K V LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAEKLGQKAPVSLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA ++ I+++ G ++ +++IGGGLG+
Sbjct: 184 AASLPN-LNIVGIDCHIGSQLTETKPFVDALERVMLMIEQLNGLGIQLKHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y V P + D ++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDEVPPTVQEYADALKPALQKLGLKVYMEPGRSISANAGILLTRVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V P QD + ++D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQPVEPH-QDIQEKEWDIVGAICETGDFLGKERKLALAED 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DL-LAVLSAGAYGFVMSSNYNTRARAAEVMV 389
>gi|262369521|ref|ZP_06062849.1| diaminopimelate decarboxylase [Acinetobacter johnsonii SH046]
gi|262315589|gb|EEY96628.1| diaminopimelate decarboxylase [Acinetobacter johnsonii SH046]
Length = 416
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 220/388 (56%), Gaps = 7/388 (1%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E +Q + + P Y+YSK ++ +A + ++ I +A+K+N+N +
Sbjct: 8 GVLHAEQCSLQQLAQQF-GTPLYVYSKATFEKHFTEMDRAFDFIDHQICFAVKSNSNIAV 66
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L KLG G +V+G EL L+AG D +K +F+G GK D+ A + G+ NV+S
Sbjct: 67 LNVLAKLGAGFDIVTGGELARVLKAGGDASKIVFSGLGKTEIDVQKALEVGIACFNVESH 126
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 127 AELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVFETYQYAAT 186
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN L ++G CH+GS +T+ F DA ++ ID+++ G ++ +++IGGGLG+ Y
Sbjct: 187 LPN-LDIIGIDCHIGSQLTETQPFVDALDRVIVMIDQLKTMGIQLKHIDIGGGLGVTY-- 243
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
V P + ++ + L + +EPGRS+ AN L+ V +K +NF +ID
Sbjct: 244 KDEVPPTVFEYANAMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTIHRNFAIID 303
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP+LY+A+ I+ V+P D E ++DVVG +CE+ DFLGKER L +
Sbjct: 304 AAMNDLIRPALYEAWMDIQPVTPR-SDVEAKEWDVVGAICETGDFLGKERLLALKENDV- 361
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 362 LAVLGAGAYGFVMSSNYNSRGRAAEVMV 389
>gi|240947851|ref|ZP_04752291.1| Diaminopimelate decarboxylase [Actinobacillus minor NM305]
gi|240297813|gb|EER48249.1| Diaminopimelate decarboxylase [Actinobacillus minor NM305]
Length = 416
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 225/389 (57%), Gaps = 8/389 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED+ V D+++ P Y+YS+ + R+ A+ A +I +A+K+N+N +L
Sbjct: 11 LFAEDIAVSDIVKE-HGTPAYIYSRATLERHWHAFDNAFGDHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG DP+K +F+G K ++ A + G+ NV+S +
Sbjct: 70 IMARLGSGFDIVSQGELERVLAAGGDPSKVVFSGVAKSHAEIARALEVGIRCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVQQAREVYRLASHLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y+ G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIRLHHLDLGGGLGVPYH--G 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L ++L +I+EPGR++ AN LV V +KTN + F ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKDYQDLEIILEPGRAITANAGILVTKVEYLKTNEDRRFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY + V + E + +DVVGP+CE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMELTEVDRS-LSREKAVYDVVGPICETSDFLGKQRELAIAE-GDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY +M+STYN + + E V S
Sbjct: 365 AMRSAGAYGATMSSTYNSRPQAVEIMVDS 393
>gi|254300613|ref|ZP_04968058.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 406e]
gi|157810592|gb|EDO87762.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 406e]
Length = 423
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSTVELAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 SLAIAPGGL-LAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|345429417|ref|YP_004822535.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus
parainfluenzae T3T1]
gi|301155478|emb|CBW14944.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus
parainfluenzae T3T1]
Length = 416
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 225/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ V+ + E P Y+YS+ + R+ A+ AL +I YA+KAN+N IL
Sbjct: 11 LYVEDLPVKQLAEEF-GTPLYIYSRATLERHWHAFDSALGDHPHLICYAVKANSNIGILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLEAGGEASKVVFSGVAKSRAEIMRALEVGIRCFNVESVAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L +I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LHHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLAATLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +++ G CH+GS +T++ F DA ++ I++++ G + +L++GGGLG+ Y T
Sbjct: 190 H-VRITGMDCHIGSQLTELQPFLDATDRLIRLIEQLQEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + +L NL +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYAAALLNKLKGYENLEIILEPGRAIAANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY + IE+ ++ I +DVVGPVCE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLGREKAI--YDVVGPVCETSDFLGKQRELAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY SM+S YN + R E V
Sbjct: 364 IAQRSAGAYGASMSSNYNSRPRTAEVLV 391
>gi|148826629|ref|YP_001291382.1| diaminopimelate decarboxylase [Haemophilus influenzae PittEE]
gi|148716789|gb|ABQ98999.1| diaminopimelate decarboxylase [Haemophilus influenzae PittEE]
Length = 450
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 228/396 (57%), Gaps = 8/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K+N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF + D M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIVEIDRT-LEREKAIYDVVGPVCETSDFLGKQRELS 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+ G + AGAY SM+S YN + R E + R
Sbjct: 358 IAE-GDYIAQCSAGAYGASMSSNYNSRARTAEVFSR 392
>gi|373458158|ref|ZP_09549925.1| diaminopimelate decarboxylase [Caldithrix abyssi DSM 13497]
gi|371719822|gb|EHO41593.1| diaminopimelate decarboxylase [Caldithrix abyssi DSM 13497]
Length = 418
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 221/397 (55%), Gaps = 15/397 (3%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
++ L+ E++ +Q+ PFYLYS+ +I +N +A A +GL+ + +A+KAN N
Sbjct: 8 SENILHAENLNLQEFAAN-HPTPFYLYSQSRIEQNCQAVINAGKGLDFLPCFALKANYNP 66
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L+ ++ +G GA +VSG EL AL+AGF P+K +F G GK E++ LA + + +N++
Sbjct: 67 ALLKLIKNMGFGADVVSGGELVFALKAGFAPSKIVFAGVGKTAEEIRLAIESRIHSINIE 126
Query: 190 SEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
S +E V +IA + + RINPD++ H Y+ATG +KFGI E
Sbjct: 127 S---IEEFKVVQKIAEELEIPTGIAFRINPDIEAPTHDYIATGKHINKFGITFEDALPLY 183
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
A HP LK VG H H+GS I + + F AA ++ +D +R QG V L++GGG+G
Sbjct: 184 RAAAKHP-WLKPVGLHIHIGSQILEAEPFLKAADYLIEKVDFLRDQGLPVTVLDLGGGIG 242
Query: 307 IDY---YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
IDY + P P+ L V + L+ E GR+++ + L+ V K
Sbjct: 243 IDYTEDFFETTRWPLPQILSAFVARFK-GLEIKLLAELGRAIVGDAGLLITKVLYKKQTP 301
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K F+++D M L+RPSLY AY I + AEI DVVGPVCES DF ++R+L
Sbjct: 302 LKKFVIVDAGMNNLLRPSLYRAYHPIVPLQRRNAPAEI--VDVVGPVCESGDFFAQDRKL 359
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
++G L + AGAY ++AS YNL+ PEY V+
Sbjct: 360 QAVEQGDFLAIGGAGAYGQALASNYNLRPLIPEYLVK 396
>gi|301311439|ref|ZP_07217366.1| diaminopimelate decarboxylase [Bacteroides sp. 20_3]
gi|423337875|ref|ZP_17315618.1| diaminopimelate decarboxylase [Parabacteroides distasonis
CL09T03C24]
gi|300830525|gb|EFK61168.1| diaminopimelate decarboxylase [Bacteroides sp. 20_3]
gi|409235948|gb|EKN28758.1| diaminopimelate decarboxylase [Parabacteroides distasonis
CL09T03C24]
Length = 386
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 201/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIAANGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIINELAATKNKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K N +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKN-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|414171551|ref|ZP_11426462.1| diaminopimelate decarboxylase [Afipia broomeae ATCC 49717]
gi|410893226|gb|EKS41016.1| diaminopimelate decarboxylase [Afipia broomeae ATCC 49717]
Length = 419
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 7/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + + V PFY YS + R+ + +A + S++ YA+KAN+N
Sbjct: 8 NGVLHAEDVSLARLADEV-GTPFYCYSTATLERHYRVFAEAFADVPSLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG GA +VSG EL+ A AG +K +F+G GK +L A E + +NV+S
Sbjct: 67 VLRTLARLGAGADVVSGGELKRARAAGIPASKILFSGVGKTEAELRHALAEDILCINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G+ + +RINPDVD + H ++TG +KFGI + +
Sbjct: 127 EPELELLSKLASETGRTARISIRINPDVDAKTHAKISTGKSENKFGIPLSRAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K+ G H+GS IT + DA LMV+++ +RA G + +++ GGGLGI Y
Sbjct: 187 KLPG-IKVTGVDTHIGSQITDLGPLEDAFKLMVDFVATLRADGHTISHVDFGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
H P+P V+ + + L+ EPGR ++ N LV V VK KNF+VI
Sbjct: 246 HDLPNPPEPSVYAAMVKRVTKGIDATLMFEPGRLIVGNAGILVARVIYVKHGDAKNFVVI 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKF-DVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+A+ V P +DA + DVVGPVCE+ D+L +R++ P
Sbjct: 306 DAAMNDLIRPTLYEAHHD---VLPVREDAARNFVADVVGPVCETGDYLALDRKMAEPKPA 362
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY + +YN + PE V ++ P
Sbjct: 363 DLVAIMTAGAYGAVQSGSYNTRALVPEVLVNGERYAVVRP 402
>gi|417840671|ref|ZP_12486780.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M19501]
gi|341950859|gb|EGT77441.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M19501]
Length = 415
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 143/396 (36%), Positives = 231/396 (58%), Gaps = 10/396 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A + +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHSHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G ++ +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIILMEQLKEDGIKLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY + IE+ ++ I +DVVGPVCE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLAREKAI--YDVVGPVCETSDFLGKQRELSIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY SM+S YN + R E V S +I
Sbjct: 364 IAQCSAGAYGASMSSNYNSRPRTAEVLVDGDQSYLI 399
>gi|260583176|ref|ZP_05850956.1| diaminopimelate decarboxylase [Haemophilus influenzae NT127]
gi|260093794|gb|EEW77702.1| diaminopimelate decarboxylase [Haemophilus influenzae NT127]
Length = 415
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 232/404 (57%), Gaps = 10/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E + P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQFDT-PLYVYSRATLERHWHAFDSAFGKRPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K+N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF + D M ++IRP+LY+AY + IE+ ++ I +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIIEIDRTLAREKAI--YDVVGPVCETSDFLGKQREL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G + AGAY SM+S YN + R E V S +I
Sbjct: 357 SIAE-GDYIAQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|254788013|ref|YP_003075442.1| diaminopimelate decarboxylase [Teredinibacter turnerae T7901]
gi|237687153|gb|ACR14417.1| diaminopimelate decarboxylase [Teredinibacter turnerae T7901]
Length = 421
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 226/392 (57%), Gaps = 12/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L E + + +T + P Y+YS+ I ++ +AY AL +I YA+KAN++
Sbjct: 8 DNQLTVEGCTLSAIADTYDT-PCYVYSRASIEQSYQAYASALGAHPGMICYAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L + G G +VS EL+ L AG + IF+G GK E++ A Q+ + NV+S
Sbjct: 67 VLQVLAQQGAGFDIVSQGELQRVLAAGGSADRVIFSGVGKKAEEMRFALQQQIACFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + ++ G V LR+NPDVD HPY++TG K +KFG+ +Q LD +
Sbjct: 127 AAELETLAQVAQAMGTTARVSLRVNPDVDANTHPYISTGLKENKFGV---DIQTALDVYR 183
Query: 251 --AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A + + +VG CH+GS +T++ F DA ++ +D++ +G + +L++GGGLG+
Sbjct: 184 RAASLDGIDVVGIDCHIGSQLTQLAPFMDALDRVLALMDQLAEEGITIRHLDLGGGLGVT 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y + P P + + V + R + L+ EPGRS++AN L+ V +K KNF
Sbjct: 244 YNNEQP--PSPADYVGQVIAKLGDRAVALMFEPGRSIVANAGVLLTRVLYLKPTEHKNFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAE-ISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M + IRPSLY A+Q + L AP+++E ++D+VGPVCE+ D+L K+R L +
Sbjct: 302 IIDAAMNDNIRPSLYQAWQRV-LPVIAPEESEPTQQWDLVGPVCETGDWLAKDRALALHE 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G+ L + +GAY +M+S YN + R E V
Sbjct: 361 -GSVLALMSSGAYGFTMSSNYNSRTRAAEIMV 391
>gi|84684125|ref|ZP_01012027.1| Orn/DAP/Arg decarboxylase, family 2 [Maritimibacter alkaliphilus
HTCC2654]
gi|84667878|gb|EAQ14346.1| Orn/DAP/Arg decarboxylase, family 2 [Rhodobacterales bacterium
HTCC2654]
Length = 421
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 213/389 (54%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ +V PFY+YS + R+ + + +AL G++ +I YA+KAN+N
Sbjct: 8 DGVLHAEDVSITDIARSV-GTPFYVYSAATLRRHYQVFDEALAGMDHLICYAMKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+++ + LG GA +VSG E R AL AG + +F+G GK +++ LA + G+ NV+S
Sbjct: 67 VVKLMGDLGAGADVVSGGEYRRALAAGIPGDRIVFSGVGKTRDEMRLALENGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + V +R+NPDVD + H +ATG +KFGI + + ++
Sbjct: 127 EPELLALNEVAMSMDTVAPVTIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYAEIR 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +K VG H+GS +T + FR A + + +R G E+ L++GGGLGI Y
Sbjct: 187 GLPG-VKAVGIDVHIGSQLTDLAPFRAAYEKVADLTHGLREDGHEIIRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P +RE V + IEPGR + N +V+ V +K ++F+++
Sbjct: 246 TSNQAPPLPLEYGQVIRETVGDLGCEIEIEPGRLIAGNAGLMVSSVIYLKHGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPS+YDA+ I V A E + D+VGPVCE+ D K+R LP G
Sbjct: 306 DSAMNDLVRPSMYDAHHDIVPVIEAAPGVEQAPHDIVGPVCETGDTFAKQRNLPPLGAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMASEYNSRPLIPEVLV 394
>gi|325579300|ref|ZP_08149256.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae ATCC
33392]
gi|325159535|gb|EGC71669.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae ATCC
33392]
Length = 416
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ V+ + E P Y+YS+ + R+ A+ AL +I YA+KAN+N IL
Sbjct: 11 LYVEDLPVKQLAEEF-GTPLYIYSRATLERHWHAFDSALGEHPHLICYAVKANSNIGILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGEASKVVFSGVAKSRAEIMRALEVGIRCFNVESVAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L +I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LHHINQIAGEMGKVAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +K+ G CH+GS +T++ F DA ++ I++++ G + +L++GGGLG+ Y T
Sbjct: 190 H-VKITGMDCHIGSQLTELQPFLDATDRLIRLIEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + +L +L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYAAALLNKLKDYEDLEIILEPGRAITANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLE-REKTIYDVVGPVCETSDFLGKQRELAIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY SM+S YN + R E V
Sbjct: 365 AQRSAGAYGASMSSNYNSRPRTAEVLV 391
>gi|359429330|ref|ZP_09220356.1| diaminopimelate decarboxylase [Acinetobacter sp. NBRC 100985]
gi|358235180|dbj|GAB01895.1| diaminopimelate decarboxylase [Acinetobacter sp. NBRC 100985]
Length = 416
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E + + + P Y+YSK + ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLDQLAQQF-GTPLYVYSKATLEKHYLDMHRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG DP K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLNVLAKLGAGFDIVTGGELARVLAAGGDPAKIVFSGLGKSESDIENALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVDQTYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA +V I++++ G + +++IGGGLG+
Sbjct: 184 AASLPN-LVIVGIDCHIGSQLTETKPFVDALDRVVVMIEQLKKLGINLKHIDIGGGLGVR 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P +++R ++ L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPTVAEYANSMRPVLEQLGLKVYMEPGRSISANAGALLTKVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRPSLY+A+ I+ V+P P+ E +D+VG +CE+ DFLGK R+L +
Sbjct: 301 IIDAAMNDLIRPSLYEAWMDIQSVNPNPE-VETKMWDLVGAICETGDFLGKARDLALQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNTRGRAAEIMV 389
>gi|256841336|ref|ZP_05546843.1| diaminopimelate decarboxylase [Parabacteroides sp. D13]
gi|256737179|gb|EEU50506.1| diaminopimelate decarboxylase [Parabacteroides sp. D13]
Length = 386
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 201/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIAANGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIINELAAAKNKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K N +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKN-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|419801391|ref|ZP_14326619.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae HK262]
gi|419845387|ref|ZP_14368660.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae HK2019]
gi|385193742|gb|EIF41098.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae HK262]
gi|386415863|gb|EIJ30383.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae HK2019]
Length = 416
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 227/389 (58%), Gaps = 12/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ V+ + E P Y+YS+ + R+ A+ AL +I YA+KAN+N IL
Sbjct: 11 LYVEDLPVKQLAEEF-GTPLYIYSRATLERHWHAFDSALGKHPHLICYAVKANSNIGILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGEASKVVFSGVAKSRAEIMRALEVGIRCFNVESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ--WFLDAVKA 251
L +I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + + L A +
Sbjct: 130 LHHINQIAGEMGKVAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLAATLS 189
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
H +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y
Sbjct: 190 H---VKITGMDCHIGSQLTELQPFLDATDRLIRLMEQLKEDGITLKHLDLGGGLGVTY-- 244
Query: 312 TGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P P + + +L +L +I+EPGR++ AN LV V +KTN ++NF +
Sbjct: 245 TDETPPHPSDYATALLNKLKDYEDLEIILEPGRAIAANAGILVAKVQYLKTNESRNFAIT 304
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G
Sbjct: 305 DTGMNDMIRPALYEAYMNIIEIDRTLE-RERAIYDVVGPVCETSDFLGKQRELAIAE-GD 362
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY SM+S YN + R E V
Sbjct: 363 YIAQRSAGAYGASMSSNYNSRPRTAEVLV 391
>gi|340379341|ref|XP_003388185.1| PREDICTED: diaminopimelate decarboxylase-like [Amphimedon
queenslandica]
Length = 424
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 223/396 (56%), Gaps = 11/396 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL--NSIIGYAIKAN 127
+ +G L EDV + V E P Y+YS+ YK+ALE + YA+KAN
Sbjct: 6 RLEGQLKVEDVLLSSVAEKY-GTPCYVYSRSGCETGYNEYKKALEWCPGGGRVCYAVKAN 64
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV- 186
+N IL L LG G +VS EL L AG + K +F G K ++ A + +F
Sbjct: 65 SNLSILSLLADLGSGFEIVSVGELERVLAAGGEGQKVVFCGVCKEEHEIRRALEVEIFCF 124
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246
NV+SE +LE I + K + LR+NPD+DP+ HPY++TG K +KFGI ++K
Sbjct: 125 NVESEKELELIQKVAESMKKVAPISLRVNPDIDPRTHPYISTGLKENKFGIESKKAVLVY 184
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
A PN +K++G CH+GS I ++ +A ++ + +++ G +++++IGGGLG
Sbjct: 185 QKAAALPN-VKIIGIACHIGSQILTMEPLLEAFDCIMGLVQELKDLGITINHIDIGGGLG 243
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVL--SRNL-NLIIEPGRSLIANTCCLVNHVTGVKTNG 363
+ Y + P P + ++ +L SR++ ++I++PGRS++A L+ V +K
Sbjct: 244 VQYSNDENP-PSPSEYLSRIKSKLLEKSRDIPDIIVQPGRSIVAEAGVLLTRVNFIKETS 302
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
K+F VID SM +L+RPSLY AY IE V EI + DVVGPVCES DF+GK+R L
Sbjct: 303 NKSFAVIDASMTDLLRPSLYGAYHKIEPVDYDENKTEI-ECDVVGPVCESGDFIGKKRRL 361
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D G +VV+ AGAY M+S YN + RP E V
Sbjct: 362 RIID-GDLIVVYGAGAYGHCMSSNYNSRNRPAEVLV 396
>gi|78776669|ref|YP_392984.1| diaminopimelate decarboxylase [Sulfurimonas denitrificans DSM 1251]
gi|78497209|gb|ABB43749.1| diaminopimelate decarboxylase [Sulfurimonas denitrificans DSM 1251]
Length = 403
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 218/374 (58%), Gaps = 12/374 (3%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K P Y+Y ++ E K A +G SI+ +AIK+N+N +++H LG GA VS E
Sbjct: 12 KTPLYVYDLDYMSAQYEELKSAFKGRKSIMAFAIKSNSNLSVIKHFATLGSGADCVSIGE 71
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ-EGVFVNVDSEFDLENIVVASRIAGKKVN 209
+ A+ AG K IF+G GK +++ A + + +++NV+SE +L + + ++ G K
Sbjct: 72 VYRAVLAGVPNYKIIFSGVGKSDDEITQAIKLDILYINVESEAELGRVELIAKELGAKCR 131
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE-LKLVGAHCHLGST 268
+ +R+NP++DPQ HPY++TG ++KFG+ + + +KA+ +E L VG H H+GS
Sbjct: 132 ISIRVNPNIDPQTHPYISTGLHDNKFGVEIDTAKRMY--IKANNSEYLDPVGIHFHIGSQ 189
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP--KPRNLIDTV 326
+T++ ++A ++ + + ++ E+ + +IGGGLG+ Y + P + ++ T+
Sbjct: 190 LTELKPIYESAEIVADLVRSLQNIKIELKFFDIGGGLGVKYKDETTITPYDYAQAILSTL 249
Query: 327 RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386
+ L +L +I EPGR L AN + V K NG K F+V+DG M +L+RPSLY AY
Sbjct: 250 KGL----DLTVICEPGRFLTANGGYFLTKVLYEKRNGDKRFVVVDGGMNDLLRPSLYKAY 305
Query: 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446
IE ++ + ++S+ DVVGPVCES DF K LPT + LV+H AGAY M S
Sbjct: 306 HKIEAITESL--TKLSEADVVGPVCESGDFFAKGYLLPTLEHNDLLVIHSAGAYGFGMGS 363
Query: 447 TYNLKMRPPEYWVR 460
YN + R E ++
Sbjct: 364 NYNTRGRSAEVAIK 377
>gi|297171019|gb|ADI22033.1| diaminopimelate decarboxylase [uncultured myxobacterium
HF0200_05J13]
Length = 420
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 216/391 (55%), Gaps = 8/391 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F +++ L+CEDV ++ + T P Y+YSK I+R+V ++AL+ L +I YA+KA
Sbjct: 4 FQRRSQ-ILHCEDVPLEAIA-TEFGTPTYVYSKATISRHVRVLQEALKDLPHLICYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N N IL+ L++LGCG VS EL G P K I +G GK +++ A V +
Sbjct: 62 NANLAILDLLQQLGCGFDAVSVGELARVSHIGASPAKTIVSGVGKRDDEIDAALSADVLY 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
+ +S +LE I + + V +R+NPDVD + HPY+ATG +KFG+ E+
Sbjct: 122 ICAESREELEAIGDIAAKRNTRARVSIRVNPDVDAKTHPYIATGMNKNKFGVPIERAIEL 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
P+ ++LVG CH+GS +T++ F DAA MV +RA G + ++ +GGGL
Sbjct: 182 YQHGLTIPS-IELVGVTCHIGSQVTELSPFIDAAERMVELTRNLRALGAPLQFIGMGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
GI Y P P + + +L+ + L +I+EPGR ++ N L++ V K +
Sbjct: 241 GIPY--GSETPPSPADYGQALSKLLGALGLTVILEPGRVIVGNAGILLSRVVRTKEGAER 298
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
F +ID M +LIRP+LY A+ IE V+ AP D E DVVGPVCESAD ++ E
Sbjct: 299 RFALIDAGMNDLIRPALYQAHHQIEAVA-APSD-EREIIDVVGPVCESADTFAEQAEFTK 356
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+ G + + AGAY MA YN + RP E
Sbjct: 357 LEPGDLIAIRSAGAYGFVMACNYNGRPRPAE 387
>gi|262376587|ref|ZP_06069815.1| diaminopimelate decarboxylase [Acinetobacter lwoffii SH145]
gi|262308297|gb|EEY89432.1| diaminopimelate decarboxylase [Acinetobacter lwoffii SH145]
Length = 414
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 220/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E +Q + E P Y+YSK + ++ +A ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLQQLAEQF-GTPLYVYSKATLEKHFLDMDRAFNFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L K G G +V+G EL L+AG +P+K +F+G GK D+ A + G+ NV
Sbjct: 64 LAVLNVLAKQGAGFDIVTGGELARVLKAGGEPSKIVFSGLGKSEADIKKALEVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + K + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAAELNVKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L +VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 184 AASLPN-LDVVGIDCHIGSQLTETQPFVDALDRVIVMIDQLKEMGIHLKHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPSVEEYANALRPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V P DAE ++D+VG +CE+ DFLGKEREL +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQPVRPR-TDAETKEWDIVGAICETGDFLGKERELAIKEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNSRGRAAEVMV 389
>gi|149913117|ref|ZP_01901651.1| diaminopimelate decarboxylase [Roseobacter sp. AzwK-3b]
gi|149813523|gb|EDM73349.1| diaminopimelate decarboxylase [Roseobacter sp. AzwK-3b]
Length = 421
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 215/389 (55%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LY EDV V ++ V PFY YS +TR+ + +AL G +I YA+KA +N
Sbjct: 8 NGELYAEDVPVAEIAAQV-GTPFYCYSTATLTRHFRLFDEALAGTEHLICYAMKAASNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L +LG G +VSG E A AG + +F+G GK +++ +A + G+ NV+S
Sbjct: 67 ILKTLAELGAGMDVVSGGEYARAKAAGVPGERIVFSGVGKTRDEMRMALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMAALNEVALSLGLRAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARAREIYAEAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++VG H+GS +T+++ FR A + + + +RA G ++ L++GGGLGI Y
Sbjct: 187 AMPG-LEVVGIDVHIGSQLTELEPFRLAYEKVADLTEALRADGHDIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P + +++ V + IEPGR ++ N LV+ V +K ++F+++
Sbjct: 246 RSNEAPPLPVDYGQLIKDTVGHLGCEIEIEPGRLVVGNAGILVSEVIYLKAGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP++YDAY I V AE + +D+VGPVCES D K R +P +G
Sbjct: 306 DAAMNDLIRPAMYDAYHDIVPVREPQPGAEQAAYDIVGPVCESGDTFAKARMMPALAQGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMASEYNTRPLVPEVLV 394
>gi|91786679|ref|YP_547631.1| diaminopimelate decarboxylase [Polaromonas sp. JS666]
gi|91695904|gb|ABE42733.1| diaminopimelate decarboxylase [Polaromonas sp. JS666]
Length = 427
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 147/406 (36%), Positives = 227/406 (55%), Gaps = 13/406 (3%)
Query: 59 HTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNS 118
H P F+ + + L+ ED+ V + + ++ P ++YSK + + AY++ G +
Sbjct: 4 HKLPGHPHFAYRGND-LFAEDLMVSE-LASLHGTPLFVYSKAAMLSALAAYQRGFAGRDV 61
Query: 119 IIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL-- 176
I YA+KAN++ +L+ GCG +VSG EL L AG K IF+G GK ++
Sbjct: 62 QICYAMKANSSLGVLQVFAGAGCGFDIVSGGELERVLAAGGQANKIIFSGVGKTRAEMRQ 121
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
LAA G F NV+SE +L+ + + + V +R+NP+VDP+ HPY++TG K +KFG
Sbjct: 122 ALAAGIGCF-NVESEAELDVLSGVAAAMNLRAPVSIRVNPNVDPKTHPYISTGLKGNKFG 180
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
+ +E A P L++ G CH+GS IT+ + DA +++ + I + G E+
Sbjct: 181 VAHEDALRIYQHAAALPG-LQVAGIDCHIGSQITETTPYLDAMDRVLDLVASIESAGIEL 239
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLV 353
++++ GGGLGI+Y G P+ L + + +R L+IEPGRSL+ N +
Sbjct: 240 EHIDFGGGLGINY--NGDTPPEADVLWRQLLAKLDARGYGSKKLMIEPGRSLVGNAGICL 297
Query: 354 NHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCES 413
V +K KNF +ID +M +L RP++Y A+ H + + A A + +DVVGPVCES
Sbjct: 298 TEVLYLKPGEQKNFCIIDAAMNDLPRPAMYQAF-HAIVPAVAGGPAPATTYDVVGPVCES 356
Query: 414 ADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D++G++R L + G L V AGAYCMSMAS YN + R E V
Sbjct: 357 GDWIGRDRPLAV-NAGDVLAVLSAGAYCMSMASNYNTRGRAAEVLV 401
>gi|407693591|ref|YP_006818380.1| diaminopimelate decarboxylase [Actinobacillus suis H91-0380]
gi|407389648|gb|AFU20141.1| diaminopimelate decarboxylase [Actinobacillus suis H91-0380]
Length = 416
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVSVSDIINQY-GTPAYIYSRATLERHWHAFDKAFGSHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG +P+K +F+G K ++ A + G+ N++S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEPSKVVFSGVAKSHSEIQRALEVGIRCFNIESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ + + K+ P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYRLAKSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L +L +I+EPGR++ AN LV V +K N +NF ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKGYADLEIILEPGRAITANAGILVTKVEYLKANEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V + E + +DVVGP+CE++DFLGK REL ++G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVDQSLV-REKAVYDVVGPICETSDFLGKGRELAI-EQGDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGAAMSSTYNSRPQAVEIMV 391
>gi|145632076|ref|ZP_01787811.1| diaminopimelate decarboxylase [Haemophilus influenzae 3655]
gi|144986983|gb|EDJ93513.1| diaminopimelate decarboxylase [Haemophilus influenzae 3655]
Length = 415
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 228/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|6562332|emb|CAB62550.1| diaminopimelate decarboxylase [Arabidopsis thaliana]
Length = 145
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 112/126 (88%), Positives = 117/126 (92%)
Query: 340 EPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDA 399
E GRSLIANTCC VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +A
Sbjct: 1 ELGRSLIANTCCFVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEA 60
Query: 400 EISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
E++KFDVVGPVCESADFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV
Sbjct: 61 EVTKFDVVGPVCESADFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 120
Query: 460 RSLISI 465
SI
Sbjct: 121 EEDGSI 126
>gi|387772198|ref|ZP_10128155.1| diaminopimelate decarboxylase [Haemophilus parahaemolyticus HK385]
gi|386907642|gb|EIJ72348.1| diaminopimelate decarboxylase [Haemophilus parahaemolyticus HK385]
Length = 415
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 226/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + D++ + P Y+YS+ + R+ A+ A +I +A+K+N+N +L
Sbjct: 11 LFAEDVAIADII-SEHGTPAYIYSRATLERHWHAFDNAFGSHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + +K +F+G K ++ A G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGEASKVVFSGVAKSHSEIERALDVGIRCFNVESIPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD + HPY++TG K +KFG+ ++ + K P
Sbjct: 130 LHRINEVAGKMGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVQQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + +L NL +I+EPGR++ AN LV V +K+N +NF ++D
Sbjct: 247 EEPPHPTEYTEALLVKLKNYPNLEIILEPGRAISANAGILVTKVEYLKSNEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V+ + D E + +DVVGP+CE++DFLGK REL + G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVNQS-LDREKAVYDVVGPICETSDFLGKGRELAIAE-GDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGATMSSTYNSRPQAVEILV 391
>gi|262383506|ref|ZP_06076642.1| diaminopimelate decarboxylase [Bacteroides sp. 2_1_33B]
gi|262294404|gb|EEY82336.1| diaminopimelate decarboxylase [Bacteroides sp. 2_1_33B]
Length = 386
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 201/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIAANGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIINELAVAKNKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K N +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKN-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|374328604|ref|YP_005078788.1| diaminopimelate decarboxylase [Pseudovibrio sp. FO-BEG1]
gi|359341392|gb|AEV34766.1| Diaminopimelate decarboxylase [Pseudovibrio sp. FO-BEG1]
Length = 423
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 222/396 (56%), Gaps = 5/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K DG L+ EDV + ++ V PFY YS+ R+ + + A +G++ + YA+
Sbjct: 2 HYFEFK-DGVLHAEDVALTEIAAEV-GTPFYCYSRATFERHFKVFDGAFDGIDHLTCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL L KLG GA +VS ELR AL+AG K +F+G GK +++ A + G+
Sbjct: 60 KANSNIAILTVLAKLGAGADVVSEGELRRALKAGIPANKIVFSGVGKTRQEMRFALEAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L+ + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 120 LCFNVESEPELKRLSEVASEMGKVAPISLRINPDVDAKTHAKISTGLAANKFGIAWDRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ P LK+ G H+GS IT++ F DA + I ++ G E+++L++GG
Sbjct: 180 AVYNEAAQLPG-LKVTGMDMHIGSQITELGPFDDALERLGVLIGMLKEDGIEIEHLDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P VR+ + + LI EPGR + N LV K
Sbjct: 239 GLGIPYGGGIEA-PLPTEYAKIVRKHIERLGVTLITEPGRLIAGNAGILVTETIYRKEGE 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF+++D +M +LIRP+LY+A+ I VS Q+ E DVVGPVCE+ D++ ++REL
Sbjct: 298 AKNFVIVDAAMNDLIRPTLYEAHHDIGAVSEERQNGEQMLADVVGPVCETGDYIARDREL 357
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P + G L V+ GAY + + TYN ++ PE V
Sbjct: 358 PKFEEGDLLAVYSCGAYGATQSGTYNTRLLVPEVLV 393
>gi|345864917|ref|ZP_08817112.1| diaminopimelate decarboxylase [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345123997|gb|EGW53882.1| diaminopimelate decarboxylase [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 415
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 225/390 (57%), Gaps = 15/390 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V + ++ P Y+YS+ + R+ A+ A ++ +A+KAN+N +L
Sbjct: 11 LYAEQVPLTEIARHY-GTPCYVYSRATLERHWHAFDDAFGAHRHLVCFAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL L AG +P K +F+G GK +++ A + G+ NV+SE +
Sbjct: 70 LLARLGSGFDIVSVGELERVLAAGGEPAKVLFSGVGKREDEMRRALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
LE + +R+AG+ + V +R+NPDVD Q HPY++TG K +KFGI ++
Sbjct: 130 LERL---NRVAGEMSVRAPVSIRVNPDVDAQTHPYISTGLKENKFGIEIQQAPAIYRQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN +++ G CH+GS +T++ F DA ++ ++++ + G + +L++GGGLGI Y
Sbjct: 187 AMPN-IEIKGIDCHIGSQLTELSPFLDALDRVLLLVEQLESDGIAIQHLDLGGGLGIHY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P+P + + E + R+ L++EPGR++ N L+ V +K K F +I
Sbjct: 245 -TDETPPQPADYARALGERLGDRDYELLVEPGRAIAGNAGILLTRVEFLKPTEHKPFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDRG 429
D +M +L+RP+LY A+Q I V Q +++D+VGP+CE+ DFLGK REL +P G
Sbjct: 304 DAAMNDLLRPALYQAHQQIVPVDRNSQ-GNRARYDLVGPICETGDFLGKGRELSLSP--G 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +M+S YN + R E V
Sbjct: 361 DLLAVRSSGAYGFTMSSNYNSRPRAAEVMV 390
>gi|416894180|ref|ZP_11924990.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus ATCC
33389]
gi|347813649|gb|EGY30315.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus ATCC
33389]
Length = 416
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 144/388 (37%), Positives = 221/388 (56%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A+ +A ++ YA+K+N N IL
Sbjct: 11 LMAENLPVKQLAEQF-GTPLYIYSKATLERHWHAFDKAFGEHPHLVCYAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG +P K +F+G K ++ + G+ NV+SE +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGEPAKVVFSGVAKSEPEITRTLEVGIRCFNVESEAE 129
Query: 194 LENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
L I VA R+ GK + LR+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 130 LLRINEVAGRL-GKTAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLAATL 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
PN +++VG CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 189 PN-IEIVGMDCHIGSQLTELQPFLDAVDRLIVLMEQLKQDGIALKHLDLGGGLGVTY--T 245
Query: 313 GAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P + E L L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 246 DETPPHPTEYAKALWEKLNAFSELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVD 305
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I + A E +DVVGP+CE++DFLGK+R+L +G
Sbjct: 306 AGMNDMIRPALYQAYMNILEIDRALTREE-KIYDVVGPICETSDFLGKQRKLAIA-QGDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|423330601|ref|ZP_17308385.1| diaminopimelate decarboxylase [Parabacteroides distasonis
CL03T12C09]
gi|409232217|gb|EKN25065.1| diaminopimelate decarboxylase [Parabacteroides distasonis
CL03T12C09]
Length = 386
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 201/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIAANGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIINELAAAKHKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K N +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKN-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|2499347|sp|O05321.1|DCDA_PSEFL RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|1929094|emb|CAA72943.1| LysA protein [Pseudomonas fluorescens]
Length = 416
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 219/390 (56%), Gaps = 11/390 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + ALEG+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALEGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 68 LNVLARLGAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIEST 127
Query: 192 FDLEN--IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L + +VA+ + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELGSRLQIVAAEL-GVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 AQLPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRY 245
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F +
Sbjct: 246 RDEEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 304 VDAAMNDLIRPALYQAWMDVTAVR--PRDTAARSYDIVGPICETGDFLAKGRELAL-EEG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 DLLAVHSAGAYGFVMSSNYNTRGRCAEVLV 390
>gi|254198509|ref|ZP_04904930.1| diaminopimelate decarboxylase [Burkholderia pseudomallei S13]
gi|169655249|gb|EDS87942.1| diaminopimelate decarboxylase [Burkholderia pseudomallei S13]
Length = 423
Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V D+ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSTIDLAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 LLAIAP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|345879095|ref|ZP_08830774.1| hypothetical protein Rifp1Sym_dl00080 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344223884|gb|EGV50308.1| hypothetical protein Rifp1Sym_dl00080 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 415
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 225/390 (57%), Gaps = 15/390 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E V + ++ P Y+YS+ + R+ A+ A ++ +A+KAN+N +L
Sbjct: 11 LYAEQVPLTEIARHY-GTPCYVYSRATLERHWHAFDDAFGAHRHLVCFAVKANSNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VS EL L AG +P K +F+G GK +++ A + G+ NV+SE +
Sbjct: 70 LLARLGSGFDIVSVGELERVLAAGGEPAKVLFSGVGKREDEMRRALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
LE + +R+AG+ + V +R+NPDVD Q HPY++TG K +KFGI ++
Sbjct: 130 LERL---NRVAGEMSVRAPVSIRVNPDVDAQTHPYISTGLKENKFGIEIQQAPAIYRQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN +++ G CH+GS +T++ F DA ++ ++++ + G + +L++GGGLGI Y
Sbjct: 187 AMPN-IEIKGIDCHIGSQLTELSPFLDALDRVLLLVEQLESDGIAIQHLDLGGGLGIHY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P+P + + E + R+ L++EPGR++ N L+ V +K K F +I
Sbjct: 245 -TDETPPQPADYARALGERLGDRDYELLVEPGRAIAGNAGILLTRVEFLKPTELKPFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDRG 429
D +M +L+RP+LY A+Q I V Q +++D+VGP+CE+ DFLGK REL +P G
Sbjct: 304 DAAMNDLLRPALYQAHQQIVPVDRNSQ-GNRARYDLVGPICETGDFLGKGRELSLSP--G 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +M+S YN + R E V
Sbjct: 361 DLLAVRSSGAYGFTMSSNYNSRPRAAEVMV 390
>gi|316936209|ref|YP_004111191.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris DX-1]
gi|315603923|gb|ADU46458.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris DX-1]
Length = 421
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 218/402 (54%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + + V PFY YS + R+ + +A GL++++ YA+KAN+N
Sbjct: 8 DGVLHAEGVSLASIAKDV-GTPFYCYSTATLERHYRVFTEAFAGLDALVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L +LG GA +VSG EL+ AL AG P K +F+G GK +L A A + +NV+S
Sbjct: 67 VLRTLARLGAGADVVSGGELQRALAAGIPPGKIVFSGVGKTEAELRAALAHDIKCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI--RNEKLQWFLDA 248
E +LE + + G+ + LR+NPDVD H ++TG +KFGI R+ + + A
Sbjct: 127 EPELELLSRLAVETGRTARISLRVNPDVDSGTHAKISTGKSENKFGIPIRHAREVY---A 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A +++ G H+GS I + A + ++ +R G V +++ GGGLGI
Sbjct: 184 RAARLPGIQVTGVDVHIGSQIIDLAPMEAAFRKVAEFVHVLRGDGHTVSHVDFGGGLGIP 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
YY P+P + V+ + + L+ EPGR ++ N LV V VK K F+
Sbjct: 244 YYEDRDAPPEPFAYAEMVKRVTHNLGCALLFEPGRMIVGNAGILVARVIYVKHGDGKTFV 303
Query: 369 VIDGSMAELIRPSLYDAYQHIELVS-PAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+AY I V PAP A + DVVGPVCE+ D+L +R+LP
Sbjct: 304 IIDAAMNDLIRPTLYEAYHEIVAVQQPAPGAASMVA-DVVGPVCETGDYLALDRKLPELK 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + + +GAY A TYN + PE V+ ++ P
Sbjct: 363 AGDLIAIMTSGAYGAVQACTYNTRPLVPEVLVKDDQVAVVRP 404
>gi|418465347|ref|ZP_13036284.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359756279|gb|EHK90438.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 416
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A+ A ++ +A+K+N N IL
Sbjct: 11 LMAENLSVKQLAEEF-GTPLYVYSKATLERHWHAFNNAFGDHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLAATLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N + +VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IDIVGMDCHIGSQLTELQPFLDAADRLIVLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V VK+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYVKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV AGAY SM+S YN + R E V
Sbjct: 364 LVQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|145638478|ref|ZP_01794088.1| diaminopimelate decarboxylase [Haemophilus influenzae PittII]
gi|386266540|ref|YP_005830032.1| diaminopimelate decarboxylase [Haemophilus influenzae R2846]
gi|145272807|gb|EDK12714.1| diaminopimelate decarboxylase [Haemophilus influenzae PittII]
gi|309751609|gb|ADO81593.1| Diaminopimelate decarboxylase [Haemophilus influenzae R2866]
gi|309973776|gb|ADO96977.1| Diaminopimelate decarboxylase [Haemophilus influenzae R2846]
Length = 415
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 229/396 (57%), Gaps = 10/396 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DAA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDAADRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQH-IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY + IE+ ++ I +DVVGPVCE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLAREKAI--YDVVGPVCETSDFLGKQRELSIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY SM+S YN + R E V S +I
Sbjct: 364 IAQCSAGAYGASMSSNYNSRPRTAEVLVDGDQSYLI 399
>gi|53720784|ref|YP_109770.1| diaminopimelate decarboxylase [Burkholderia pseudomallei K96243]
gi|53723888|ref|YP_104274.1| diaminopimelate decarboxylase [Burkholderia mallei ATCC 23344]
gi|67641896|ref|ZP_00440661.1| diaminopimelate decarboxylase [Burkholderia mallei GB8 horse 4]
gi|121598495|ref|YP_994480.1| diaminopimelate decarboxylase [Burkholderia mallei SAVP1]
gi|124383764|ref|YP_001027872.1| diaminopimelate decarboxylase [Burkholderia mallei NCTC 10229]
gi|126440111|ref|YP_001060712.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 668]
gi|126450624|ref|YP_001082967.1| diaminopimelate decarboxylase [Burkholderia mallei NCTC 10247]
gi|134283137|ref|ZP_01769838.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 305]
gi|167004384|ref|ZP_02270142.1| diaminopimelate decarboxylase [Burkholderia mallei PRL-20]
gi|167721539|ref|ZP_02404775.1| diaminopimelate decarboxylase [Burkholderia pseudomallei DM98]
gi|167817718|ref|ZP_02449398.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 91]
gi|167826115|ref|ZP_02457586.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 9]
gi|167896199|ref|ZP_02483601.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 7894]
gi|167920804|ref|ZP_02507895.1| diaminopimelate decarboxylase [Burkholderia pseudomallei BCC215]
gi|217424773|ref|ZP_03456270.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 576]
gi|226198282|ref|ZP_03793853.1| diaminopimelate decarboxylase [Burkholderia pseudomallei Pakistan
9]
gi|254174722|ref|ZP_04881383.1| diaminopimelate decarboxylase [Burkholderia mallei ATCC 10399]
gi|254180377|ref|ZP_04886975.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1655]
gi|254201350|ref|ZP_04907714.1| diaminopimelate decarboxylase [Burkholderia mallei FMH]
gi|254206692|ref|ZP_04913043.1| diaminopimelate decarboxylase [Burkholderia mallei JHU]
gi|386863434|ref|YP_006276383.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1026b]
gi|418392839|ref|ZP_12968590.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 354a]
gi|418534583|ref|ZP_13100422.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1026a]
gi|418542127|ref|ZP_13107581.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1258a]
gi|418548652|ref|ZP_13113760.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1258b]
gi|418554588|ref|ZP_13119368.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 354e]
gi|52211198|emb|CAH37187.1| diaminopimelate decarboxylase [Burkholderia pseudomallei K96243]
gi|52427311|gb|AAU47904.1| diaminopimelate decarboxylase [Burkholderia mallei ATCC 23344]
gi|121227305|gb|ABM49823.1| diaminopimelate decarboxylase [Burkholderia mallei SAVP1]
gi|124291784|gb|ABN01053.1| diaminopimelate decarboxylase [Burkholderia mallei NCTC 10229]
gi|126219604|gb|ABN83110.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 668]
gi|126243494|gb|ABO06587.1| diaminopimelate decarboxylase [Burkholderia mallei NCTC 10247]
gi|134245332|gb|EBA45425.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 305]
gi|147747244|gb|EDK54320.1| diaminopimelate decarboxylase [Burkholderia mallei FMH]
gi|147752234|gb|EDK59300.1| diaminopimelate decarboxylase [Burkholderia mallei JHU]
gi|160695767|gb|EDP85737.1| diaminopimelate decarboxylase [Burkholderia mallei ATCC 10399]
gi|184210916|gb|EDU07959.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1655]
gi|217392229|gb|EEC32254.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 576]
gi|225929802|gb|EEH25818.1| diaminopimelate decarboxylase [Burkholderia pseudomallei Pakistan
9]
gi|238522908|gb|EEP86350.1| diaminopimelate decarboxylase [Burkholderia mallei GB8 horse 4]
gi|243060289|gb|EES42475.1| diaminopimelate decarboxylase [Burkholderia mallei PRL-20]
gi|385356306|gb|EIF62423.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1258a]
gi|385357614|gb|EIF63660.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1258b]
gi|385358952|gb|EIF64932.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1026a]
gi|385370064|gb|EIF75337.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 354e]
gi|385374999|gb|EIF79801.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 354a]
gi|385660562|gb|AFI67985.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1026b]
Length = 423
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGTLHAERVSTVELAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 SLAIAP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|56461656|ref|YP_156937.1| diaminopimelate decarboxylase [Idiomarina loihiensis L2TR]
gi|56180666|gb|AAV83388.1| Diaminopimelate decarboxylase [Idiomarina loihiensis L2TR]
Length = 420
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 224/398 (56%), Gaps = 25/398 (6%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G + E+ V+ ++E P Y+YSK QI +N ++Q + + YA+KAN+N
Sbjct: 9 NGQFHIENCDVESLIERFSS-PLYVYSKGQILKNWREFQQYWPAPHKLC-YAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
IL+ L + G G +VSG EL+ L AG +F+G K +++++A + G+ NV+S
Sbjct: 67 ILQLLAEHGAGFDIVSGGELQRVLMAGGKAGDVVFSGVAKSKDEIIMALEAGIGCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE I + K+ V LR+NPDVD + HPY+ATG K +KFGI +
Sbjct: 127 EAELERIQDIAAAMDKQAPVSLRVNPDVDAKTHPYIATGMKANKFGISMSLAKPVFLKAH 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ PN + L+GA CH+GS I + F DAA M N + ++ G ++ +L++GGG G+ Y
Sbjct: 187 SLPN-INLIGADCHIGSQIMTAEPFLDAAQRMFNLVSELEKDGVQLTHLDLGGGFGVAY- 244
Query: 311 HTGAVLPKPRNLIDT---VRELV-LSRN---LNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
+P +D ++ELV L+ N + L++EPGR++ A+ L+ V +K +
Sbjct: 245 -------QPEEPLDKSFYLKELVKLAENYPQITLVLEPGRAITADAGVLLTTVEYIKPSE 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKF--DVVGPVCESADFLGKER 421
KNF+++D M +LIRPSLY A+ I PA ++ D+VGPVCE+ DF G R
Sbjct: 298 DKNFVLVDAGMNDLIRPSLYQAWHDI---LPAHENKRGGDQLNDIVGPVCETGDFFGHAR 354
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L +G L + AGAY +MAS YN + RPPE V
Sbjct: 355 HLNV-QQGDVLAIKHAGAYGFTMASNYNSRGRPPEVLV 391
>gi|296113696|ref|YP_003627634.1| diaminopimelate decarboxylase [Moraxella catarrhalis RH4]
gi|416157621|ref|ZP_11605243.1| diaminopimelate decarboxylase [Moraxella catarrhalis 101P30B1]
gi|416215843|ref|ZP_11623356.1| diaminopimelate decarboxylase [Moraxella catarrhalis 7169]
gi|416222792|ref|ZP_11626245.1| diaminopimelate decarboxylase [Moraxella catarrhalis 103P14B1]
gi|416229286|ref|ZP_11628006.1| diaminopimelate decarboxylase [Moraxella catarrhalis 46P47B1]
gi|416236225|ref|ZP_11630564.1| diaminopimelate decarboxylase [Moraxella catarrhalis 12P80B1]
gi|416237670|ref|ZP_11631112.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC1]
gi|416242734|ref|ZP_11633703.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC7]
gi|416245999|ref|ZP_11634891.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC8]
gi|421780499|ref|ZP_16216987.1| diaminopimelate decarboxylase [Moraxella catarrhalis RH4]
gi|295921390|gb|ADG61741.1| diaminopimelate decarboxylase [Moraxella catarrhalis BBH18]
gi|326562436|gb|EGE12755.1| diaminopimelate decarboxylase [Moraxella catarrhalis 7169]
gi|326562805|gb|EGE13100.1| diaminopimelate decarboxylase [Moraxella catarrhalis 46P47B1]
gi|326563210|gb|EGE13478.1| diaminopimelate decarboxylase [Moraxella catarrhalis 12P80B1]
gi|326563474|gb|EGE13737.1| diaminopimelate decarboxylase [Moraxella catarrhalis 103P14B1]
gi|326569144|gb|EGE19206.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC1]
gi|326570630|gb|EGE20666.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC7]
gi|326571337|gb|EGE21354.1| diaminopimelate decarboxylase [Moraxella catarrhalis BC8]
gi|326573784|gb|EGE23741.1| diaminopimelate decarboxylase [Moraxella catarrhalis 101P30B1]
gi|407812187|gb|EKF82973.1| diaminopimelate decarboxylase [Moraxella catarrhalis RH4]
Length = 435
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 227/399 (56%), Gaps = 29/399 (7%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ + + + E + P Y YS+ + N ++Y A + ++ I YA+KAN+N
Sbjct: 32 DGTLHFDGINTHTLKE-IYGTPLYAYSQRTLLENYQSYTDAFDAIDHQICYAVKANSNLA 90
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L K G G +VS EL L+ D K +++G GK +D+ A + + NV+S
Sbjct: 91 ILKTLAKAGAGFDIVSKGELARVLQVA-DAKKVVYSGVGKTADDIEYALKADIHCFNVES 149
Query: 191 EFDLENIVVASRIAGKK---VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+L+ I + +AG++ + LRINPDVD + HPY++TG K++KFGI +E Q
Sbjct: 150 LSELDTI---NEVAGRQNQIARISLRINPDVDAKTHPYISTGMKDNKFGISHE--QAVAA 204
Query: 248 AVKAH--PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
V AH PN LK+VG CH+GS + D F DA ++ ID + +G ++ ++++GGGL
Sbjct: 205 YVYAHHLPN-LKIVGIDCHIGSQLLDTDGFSDALDKLIELIDTLTDKGIKLQHIDLGGGL 263
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR----NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
G+ Y V ID V ++L R L L +EPGRSL+AN L+ V +K
Sbjct: 264 GVRYIDENPVS------IDQVATVLLPRLKQLGLKLYLEPGRSLVANAGVLLTTVDVLKP 317
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKE 420
KNF ++D SM+ELIRP+LY++ I PA + +K +DVVG VCES+DFLGK+
Sbjct: 318 TEFKNFAIVDASMSELIRPALYESQMAI---IPAKLSRDTAKTWDVVGTVCESSDFLGKD 374
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L + G L V AGAY SMA YN + RP E V
Sbjct: 375 RIL-SLQVGDTLAVTGAGAYGFSMACNYNTRPRPCEVMV 412
>gi|229845773|ref|ZP_04465885.1| diaminopimelate decarboxylase [Haemophilus influenzae 7P49H1]
gi|229810777|gb|EEP46494.1| diaminopimelate decarboxylase [Haemophilus influenzae 7P49H1]
Length = 415
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 230/403 (57%), Gaps = 8/403 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K+N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+NF + D M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELS 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G + AGAY SM+S YN + R E V S +I
Sbjct: 358 IAE-GDYIAQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|389703284|ref|ZP_10185519.1| diaminopimelate decarboxylase [Acinetobacter sp. HA]
gi|388611499|gb|EIM40600.1| diaminopimelate decarboxylase [Acinetobacter sp. HA]
Length = 414
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E +Q + E P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLQQLAEQF-GTPLYVYSKATFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L K G G +V+G EL L+AG +P+K +F+G GK D+ A + G+ NV
Sbjct: 64 LAVLNVLAKQGAGFDIVTGGELARVLKAGGEPSKIVFSGLGKSEADIKKALEVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + G K + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAAELGLKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ N L +VG CH+GS +T+ F DA ++ +D+++ G + +++IGGGLG+
Sbjct: 184 AASLAN-LDVVGIDCHIGSQLTETQPFVDALDRVIVMVDQLKEMGIHLKHIDIGGGLGVT 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P + + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPSVQEYANALRPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTSHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V+P D E ++DVVG +CE+ DFLGKEREL +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQSVTPR-NDVETKEWDVVGAICETGDFLGKERELAIKEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNSRGRAAEVMV 389
>gi|126453755|ref|YP_001067996.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1106a]
gi|167847626|ref|ZP_02473134.1| diaminopimelate decarboxylase [Burkholderia pseudomallei B7210]
gi|242316004|ref|ZP_04815020.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1106b]
gi|403520429|ref|YP_006654563.1| diaminopimelate decarboxylase [Burkholderia pseudomallei BPC006]
gi|126227397|gb|ABN90937.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1106a]
gi|242139243|gb|EES25645.1| diaminopimelate decarboxylase [Burkholderia pseudomallei 1106b]
gi|403076071|gb|AFR17651.1| diaminopimelate decarboxylase [Burkholderia pseudomallei BPC006]
Length = 423
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 227/408 (55%), Gaps = 22/408 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ E P ++YS+ +T EAY +A G + I A+KAN+N
Sbjct: 10 DGALHAERVSTVELAERF-GTPLFVYSRAALTAAYEAYAKACAGRRASIHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ +A + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRARDVVFSGVGKSADEMRVALEAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V AS GK+ V LR+NPDVDP+ HPY++TG K +KFGI + + A
Sbjct: 129 IPELDRLNAVAAS--LGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGIAFDDARATYRA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
A PN L++VG CH+GS IT++ + DA +++ +++I A G ++ ++++GGGLGI
Sbjct: 187 AAALPN-LEVVGIDCHIGSQITELSPYLDAIDKLLDLVERIEADGVQIHHVDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR-------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y P ++ VR VL+R + EPGRSL N L+ V +K
Sbjct: 246 YDDE-----TPPDIGAYVRA-VLARIDARGHGQREIWFEPGRSLTGNAGILLTRVEFLKQ 299
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y A+ I V+P D + +D+VGPVCES D+LG+ER
Sbjct: 300 GEEKNFAIVDAAMNDLARPAMYQAFHAIVPVAPR-TDVAAAVYDIVGPVCESGDWLGRER 358
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L G L + AGAY +M+S YN + R E V + ++ P
Sbjct: 359 SLAIAP-GDLLAIRSAGAYGFTMSSNYNTRPRAAEVIVDGANAHLVRP 405
>gi|145634864|ref|ZP_01790572.1| diaminopimelate decarboxylase [Haemophilus influenzae PittAA]
gi|145268030|gb|EDK08026.1| diaminopimelate decarboxylase [Haemophilus influenzae PittAA]
Length = 415
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 228/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRPRTAEVLVDGDQSYLI 399
>gi|291277519|ref|YP_003517291.1| diaminopimelate decarboxylase [Helicobacter mustelae 12198]
gi|290964713|emb|CBG40568.1| diaminopimelate decarboxylase [Helicobacter mustelae 12198]
Length = 412
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/370 (34%), Positives = 216/370 (58%), Gaps = 6/370 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y +I N AYK A G S+I YA+KAN+N +++ + +L GA VS E++
Sbjct: 18 PLYVYDMEKIKANFLAYKDAFSGRKSLICYALKANSNLSVIKIIAELDGGADCVSIGEVK 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
A+ AG P + IF+G GK ++ A + G+ F+NV+S +L + ++ G +
Sbjct: 78 RAILAGIKPYRIIFSGVGKKDSEIKEALKIGILFINVESYAELLRVEAVAKELGSIARIS 137
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE-LKLVGAHCHLGSTIT 270
+R+NP++DP+ HPY++TG +KFG+ E+ + + AH ++ L+ +G H H+GS +T
Sbjct: 138 VRVNPNIDPKTHPYISTGLSENKFGVEMEEARRMY--LYAHKSDFLQPIGVHFHIGSQLT 195
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
++D + + ++ + A G ++ + ++GGG+GI Y G + ++ +
Sbjct: 196 QLDPIAQSTQKIADFARGLVAIGIDLKFFDVGGGVGICYKDEGVF--DIHDYAQSILSKL 253
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
++ +I EPGRS++ N+ LV V K K F+++DG+M +L+RPSLYDA+ +
Sbjct: 254 SGLDVTIICEPGRSIVGNSGYLVTQVLYEKHTPKKRFVIVDGAMNDLLRPSLYDAHHGVS 313
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
++ ++ E+S DVVGP+CESADFL K ELP G ++ +AGAY SM+S YN
Sbjct: 314 VIKQRKEEGELSLADVVGPICESADFLAKNIELPPMHAGDFVIFENAGAYGFSMSSNYNT 373
Query: 451 KMRPPEYWVR 460
+ R E V+
Sbjct: 374 RGRCAEVGVQ 383
>gi|145637736|ref|ZP_01793388.1| diaminopimelate decarboxylase [Haemophilus influenzae PittHH]
gi|145269085|gb|EDK09036.1| diaminopimelate decarboxylase [Haemophilus influenzae PittHH]
Length = 415
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 225/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDMPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKTIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY SM+S YN + R E V
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLV 391
>gi|416251445|ref|ZP_11637713.1| diaminopimelate decarboxylase [Moraxella catarrhalis CO72]
gi|326572968|gb|EGE22947.1| diaminopimelate decarboxylase [Moraxella catarrhalis CO72]
Length = 435
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 156/399 (39%), Positives = 227/399 (56%), Gaps = 29/399 (7%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ + + + E + P Y YS+ + N ++Y A + ++ I YA+KAN+N
Sbjct: 32 DGTLHFDGINTHTLKE-IYGTPLYAYSQRALLENYQSYTDAFDAIDHQICYAVKANSNLA 90
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L K G G +VS EL L+ D K +++G GK +D+ A + + NV+S
Sbjct: 91 ILKTLAKAGAGFDIVSKGELARVLQVA-DAKKVVYSGVGKTADDIEYALKADIHCFNVES 149
Query: 191 EFDLENIVVASRIAGKK---VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+L+ I + +AG++ + LRINPDVD + HPY++TG K++KFGI +E Q
Sbjct: 150 LSELDTI---NEVAGRQNQIARISLRINPDVDAKTHPYISTGMKDNKFGISHE--QAVAA 204
Query: 248 AVKAH--PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
V AH PN LK+VG CH+GS + D F DA ++ ID + +G ++ ++++GGGL
Sbjct: 205 YVYAHHLPN-LKIVGIDCHIGSQLLDTDGFSDALDKLIELIDTLTDKGIKLQHIDLGGGL 263
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR----NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
G+ Y V ID V ++L R L L +EPGRSL+AN L+ V +K
Sbjct: 264 GVRYIDENPVS------IDQVATVLLPRLKQLGLKLYLEPGRSLVANAGVLLTTVDVLKP 317
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKE 420
KNF ++D SM+ELIRP+LY++ I PA + +K +DVVG VCES+DFLGK+
Sbjct: 318 TEFKNFAIVDASMSELIRPALYESQMAI---IPAKLSRDTAKTWDVVGTVCESSDFLGKD 374
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L + G L V AGAY SMA YN + RP E V
Sbjct: 375 RIL-SLQVGDTLAVTGAGAYGFSMACNYNTRPRPCEVMV 412
>gi|260431546|ref|ZP_05785517.1| diaminopimelate decarboxylase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415374|gb|EEX08633.1| diaminopimelate decarboxylase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 421
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 214/390 (54%), Gaps = 5/390 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + + E V PFY+YS + R+ + +AL G + ++ YA+KA +N
Sbjct: 8 DGALHAEDVPIAHIAEAV-GTPFYIYSTATLLRHYRLFDEALAGTDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VSG E A AG K +F+G GK E++ A G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSGGEYLRAKAAGVPGDKIVFSGVGKTAEEIRTALTGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E I + G + +R+NPDVD + H +ATG +KFGI +
Sbjct: 127 EPEMEVINAVALELGVIAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARAPQVYAHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P LK+VG H+GS +T ++ FR A + +++RAQG ++ L++GGGLGI Y
Sbjct: 187 SLPG-LKVVGIDVHIGSQLTDLEPFRLAYSKVAELTEQLRAQGHDIRRLDLGGGLGIPYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P ++E + + IEPGR + N +V+ V VK+ ++F+++
Sbjct: 246 RSNEAPPLPVEYGAMIKETLGHLGCEIEIEPGRLIAGNAGLMVSKVIYVKSGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++YDAY I ++ PAP E +D+VGPVCE+ D K+R +P G
Sbjct: 306 DGAMNDLIRPAMYDAYHDIVPVIEPAP-GVEQRPYDIVGPVCETGDTFAKQRNMPPLRPG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 365 DLVAFRSAGAYGAVMASEYNTRPLIPEVLV 394
>gi|254472266|ref|ZP_05085666.1| diaminopimelate decarboxylase [Pseudovibrio sp. JE062]
gi|211958549|gb|EEA93749.1| diaminopimelate decarboxylase [Pseudovibrio sp. JE062]
Length = 423
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 221/396 (55%), Gaps = 5/396 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F K DG L+ EDV + ++ V PFY YS+ R+ + + A +G++ + YA+
Sbjct: 2 HYFEFK-DGVLHAEDVALTEIAAEV-GTPFYCYSRATFERHFKVFDGAFDGIDHLTCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N IL L KLG GA +VS ELR AL+AG K +F+G GK +++ A G+
Sbjct: 60 KANSNIAILTVLAKLGAGADVVSEGELRRALKAGIPANKIVFSGVGKTRQEMRFALNAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L+ + + GK + LRINPDVD + H ++TG +KFGI ++ +
Sbjct: 120 LCFNVESEPELKRLSEVASEMGKTAPISLRINPDVDAKTHAKISTGLAANKFGIAWDRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ P LK+ G H+GS IT++ F DA + I ++ G E+++L++GG
Sbjct: 180 AVYNEAAQLPG-LKVTGMDMHIGSQITELGPFDDALERLGVLIGMLKEDGIEIEHLDVGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y P P VR+ + + LI EPGR + N LV K
Sbjct: 239 GLGIPYGGG-IEAPLPTEYAKIVRKHIERLGVTLITEPGRLIAGNAGILVTETIYRKEGE 297
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF+++D +M +LIRP+LY+A+ I VS Q+ E DVVGPVCE+ D++ ++REL
Sbjct: 298 PKNFVIVDAAMNDLIRPTLYEAHHDIGAVSEERQNGEQMLADVVGPVCETGDYIARDREL 357
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
P + G L V+ GAY + + TYN ++ PE V
Sbjct: 358 PKFEEGDLLAVYSCGAYGATQSGTYNTRLLVPEVLV 393
>gi|425746215|ref|ZP_18864245.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-323]
gi|425486092|gb|EKU52464.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-323]
Length = 416
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 221/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E + D + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSL-DQLAQQYGTPLYVYSKATFEKHYLDMHRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L K+G G +V+G EL L AG +P K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLRVLAKVGAGFDIVTGGELARVLAAGGEPAKIVFSGLGKSEVDIEKALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK + LR+NPDVD HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAKLGKKAPISLRVNPDVDANTHPYISTGLKENKFGIPSDTVNETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L++VG CH+GS +T+ F DA ++ I+++++ G + +++IGGGLG+
Sbjct: 184 AASLPN-LEIVGIDCHIGSQLTETQPFVDALDRVILMIEQLKSLGINLKHIDIGGGLGVR 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPSVEEYANAMRPALEKLGLKVYMEPGRSISANAGALLTKVDLLKPTSHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V+P+ D E+ +D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQSVNPSA-DVEVKTWDLVGAICETGDFLGKERDLALQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|384412284|ref|YP_005621649.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335932658|gb|AEH63198.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 421
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 214/389 (55%), Gaps = 10/389 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---SIIGYA 123
FS K +G L ED+ + ++ P Y+YS +T + +AL+G +++ +A
Sbjct: 4 FSLK-NGTLCVEDIPLPEIAAQY-GTPCYVYSHSYLTERARRFTKALDGAGKGKALVAFA 61
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN + IL K G GA +VS E+R A+ AG P + +F+G GK E++ A + G
Sbjct: 62 VKANPSQAILASFAKEGLGADVVSAGEIRRAVHAGIPPERIVFSGVGKTAEEMRYALEIG 121
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S ++E + + GKK V LRINPDVDP H +ATG ++KFGI E
Sbjct: 122 IGQFNIESVSEIEMLAEVAASLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEDA 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + ++P+ LK+ G H+GS IT + F AA + I + G ++ ++G
Sbjct: 182 LSAYEKLASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHAIETADLG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLG+ Y P + ++ + N LI EPGRSLIAN L++ V VK +
Sbjct: 241 GGLGVRYKDDQPEPPSIEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGILLSKVIRVKES 300
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
T F+++D +M +L+RP+LYDAY I+ V+P+ A+ + D+VGPVCE+ D + R
Sbjct: 301 KTARFVILDAAMNDLVRPTLYDAYHEIKAVTPS---AQAYQADIVGPVCETGDIFARNRS 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+P + + AGAY +MAS YN +
Sbjct: 358 IPAVKPDDLVAIMSAGAYGATMASAYNSR 386
>gi|344198453|ref|YP_004782779.1| diaminopimelate decarboxylase [Acidithiobacillus ferrivorans SS3]
gi|343773897|gb|AEM46453.1| diaminopimelate decarboxylase [Acidithiobacillus ferrivorans SS3]
Length = 414
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 213/384 (55%), Gaps = 11/384 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ +Q++ E P Y+YS+ + ++ AL G N+ + YA+KAN+N IL
Sbjct: 11 LYGEDLPLQEIAERY-GTPCYVYSEAALRERYHSFSTALGG-NTQVCYAVKANSNLSILR 68
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
++G G +VSG EL LRAG D K +F+G GK ++ A + +NV+S +
Sbjct: 69 LFAEMGAGFDIVSGGELERVLRAGGDAGKIVFSGVGKSSVEIRAALNAAISCLNVESAAE 128
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK+ V LR+NPDVDP H Y+ATG K SKFGI E+ + HP
Sbjct: 129 LWRIADIAADMGKRAPVALRVNPDVDPGTHRYIATGLKESKFGIPMEQARDLYLQAAQHP 188
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L+L G CH+GS + + +AA + D++ A G + +L++GGG+GI Y+
Sbjct: 189 -ALELKGIACHIGSQLLDLTPLGEAAARVRALYDELAADGIALQHLDLGGGVGICYHDE- 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P P + T+ + + + ++E GR+L+ N L+ V +K NG K F V+D +
Sbjct: 247 -TPPNPADYAWTLEQALQGLEVRRVVELGRALVGNAGVLLTRVEYLKDNGRKQFCVVDAA 305
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKERELPTPDRGAGL 432
M +L+RP+LY A+ I P Q AE ++ D+VGPVCES DFL K+R L G L
Sbjct: 306 MNDLLRPALYGAWHDI---LPLHQSAEATQPMDIVGPVCESGDFLAKDRPL-AAKAGDLL 361
Query: 433 VVHDAGAYCMSMASTYNLKMRPPE 456
V GAY +M+ YN + RPPE
Sbjct: 362 AVMSTGAYGFAMSGNYNSRPRPPE 385
>gi|256810722|ref|YP_003128091.1| diaminopimelate decarboxylase [Methanocaldococcus fervens AG86]
gi|256793922|gb|ACV24591.1| diaminopimelate decarboxylase [Methanocaldococcus fervens AG86]
Length = 436
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/387 (37%), Positives = 222/387 (57%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQITRN----VEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI N +EA+K+ E G I+ YA KAN N I +
Sbjct: 22 DAIELAEKFGTPLYVMSEEQIKINYNKYIEAFKRWEEETGKEFIVAYAYKANANLAITKL 81
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDL 194
L KLGCGA +VSG EL +A + K +FNGN K E++++ + + NVDS +L
Sbjct: 82 LSKLGCGADVVSGGELYIAKLSNVPSEKIVFNGNCKTKEEIIMGIEANIRAFNVDSISEL 141
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--H 252
I ++ GK NV RINP+VDP+ HP ++TG K +KFG+ E L A+K
Sbjct: 142 ILINETAKELGKVANVAFRINPNVDPKTHPKISTGLKKNKFGLDVES-GIALKAIKMALE 200
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ + +VG HCH+GS +T V F +A +++++ K++ +G E+ +N+GGGLGI Y
Sbjct: 201 MDNVNVVGVHCHIGSQLTDVSPFIEATEKVMDFVVKLKEEGIEIRDVNLGGGLGIPYEKD 260
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
V P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 261 KKV-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGRVHHIKETPITKW 319
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D M +++RP++YDAY HI ++ +D E + G +CES+D G++RE+ P+
Sbjct: 320 VMVDAGMNDMMRPAMYDAYHHI--INCKVKD-EKEVVSIAGGLCESSDVFGRDREIDKPE 376
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 377 VGDVLAIFDVGAYGISMANNYNARGRP 403
>gi|319775330|ref|YP_004137818.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3047]
gi|329122674|ref|ZP_08251252.1| diaminopimelate decarboxylase [Haemophilus aegyptius ATCC 11116]
gi|317449921|emb|CBY86133.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3047]
gi|327472548|gb|EGF17978.1| diaminopimelate decarboxylase [Haemophilus aegyptius ATCC 11116]
Length = 415
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 227/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ +Q + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPIQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|406915829|gb|EKD54875.1| hypothetical protein ACD_60C00038G0037 [uncultured bacterium]
Length = 411
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 221/387 (57%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY E++ + D+ P Y+YSK + + + + AL +I YA+KAN N IL
Sbjct: 8 LYIENIPLADIANQF-GTPCYVYSKELLLNHWQKFHDALAKRPHLICYAVKANTNLAILN 66
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
KL G +VS EL L AG DP K +F+G GK ++++V A G+ N++S+ +
Sbjct: 67 LFAKLNSGFDIVSIGELERVLAAGGDPNKIVFSGVGKKVDEMVRALNIGIHCFNIESDVE 126
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L + ++ K + LRINP++D + HP++ATG +KFGI +D +K P
Sbjct: 127 LRRLHEVAKSQKKIAPISLRINPNIDARTHPHIATGLNENKFGIAYTDALSIIDQLKNFP 186
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY-YHT 312
+ LKL+G H+GS IT+++ F A ++ +++ +G E++++NIGGGLG+ Y Y T
Sbjct: 187 H-LKLIGIGSHIGSQITELNPFISAIDKLLELHHQLKTKGIEIEHINIGGGLGVHYQYET 245
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
+ + + +L +I+EPGR+++AN L+ + +K KNF ++D
Sbjct: 246 TPTIEEYAAALSQ----KFPSSLKIILEPGRAIVANAGILLTKIEYLKHTPHKNFAIVDA 301
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
+M +L+RP+LYDA+ IE + + E +D+VGPVCESADFLGK+R L + G L
Sbjct: 302 AMNDLLRPALYDAWHKIEPIH-LKETIEKKLYDIVGPVCESADFLGKQRTLAI-ETGDLL 359
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V+ AGAY SM+S YN + R E +
Sbjct: 360 AVYSAGAYGFSMSSNYNSRPRAAEVMI 386
>gi|381157287|ref|ZP_09866521.1| diaminopimelate decarboxylase [Thiorhodovibrio sp. 970]
gi|380881150|gb|EIC23240.1| diaminopimelate decarboxylase [Thiorhodovibrio sp. 970]
Length = 422
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/397 (36%), Positives = 223/397 (56%), Gaps = 11/397 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F++KA G L+ E V +Q + E P Y+YS+ + R+ A+ A + +I +A+KA
Sbjct: 4 FTRKA-GDLHAEAVPLQAIAER-HGTPCYVYSRATLERHWRAFDAAFAERDHLICFAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L ++G G +VS EL L AG DP + +F+G GK ++++ A + G+
Sbjct: 62 NSNLAVLNVLARMGSGFDIVSVGELERVLTAGGDPGRVVFSGVGKRVDEISRALEVGIHC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244
NV+S +LE I +R G V LR+NPDVD HPY+ATG +KFGI E +
Sbjct: 122 FNVESPAELERIDAIARAQGLIAPVSLRVNPDVDAGTHPYIATGLAENKFGIAIGEAVAV 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+ + A +++VG CH+GS +T++ F A ++ D++ G + +L++GGG
Sbjct: 182 Y--QLAARLPGVRVVGIDCHIGSQLTELAPFVAALERVLALADELERLGIGIAHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P P + + E + R +++EPGR++ AN L+ V +K NG
Sbjct: 240 LGVRYIDEQP--PSPAAYVSALLERLGERPYRILLEPGRAIAANAGILLTRVEHLKHNGE 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDA--EISKFDVVGPVCESADFLGKERE 422
++F ++D +M +LIRP+LY A Q I V D+ E+ D+VGPVCE+ DFLGK R
Sbjct: 298 RHFAIVDAAMNDLIRPALYQAQQDIVQVCKRDGDSPGEVHSVDLVGPVCETGDFLGKARR 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + G L V +GAY M+S YN + R PE V
Sbjct: 358 LALAE-GDLLAVRSSGAYGFVMSSNYNSRPRAPEVMV 393
>gi|332289594|ref|YP_004420446.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein
[Gallibacterium anatis UMN179]
gi|330432490|gb|AEC17549.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein
[Gallibacterium anatis UMN179]
Length = 417
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 223/395 (56%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ K D L E++ V+ + + P Y+YS+ + R+ A+ AL+G +I +A+K+
Sbjct: 4 FNYKNDQ-LMAEEISVKQLAQQF-GTPLYVYSRATLERHWHAFDSALQGHPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N N +L L KLG G +VS EL L AG + K +F+G K ++ A + G+
Sbjct: 62 NPNIALLNLLAKLGSGFDIVSQGELERVLAAGGEANKVVFSGVAKSHTEIERALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L I + GKK + LR+NPDVD + HPY++TG K +KFG+ E+ +
Sbjct: 122 FNVESEAELLRINQVAEKLGKKAPISLRVNPDVDAKTHPYISTGLKKNKFGVSVERAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
K P+ +++VG CH+GS +T++ F D+A ++ ++++R G E+ +L++GGGL
Sbjct: 182 YRLAKTLPH-IQIVGMDCHIGSQLTELQPFLDSADRLLVLLEQLRQDGIELQHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P P + + L +I+EPGR++ AN LV V +K+N
Sbjct: 241 GVRY--SDETPPHPTEYASALLAKFKQYPELEIILEPGRAISANAGILVTKVEYLKSNED 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF ++D M ++IRP+LY AY I + + D E +DVVGP+CE++DFLGK R L
Sbjct: 299 FNFAIVDAGMNDMIRPALYQAYMEI-IEADRTLDRERKVYDVVGPICETSDFLGKGRSLA 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G +V AGAY SMAS YN R E V
Sbjct: 358 IA-AGDFIVQRSAGAYGASMASNYNSHPRAAEVLV 391
>gi|416256019|ref|ZP_11639496.1| diaminopimelate decarboxylase [Moraxella catarrhalis O35E]
gi|326574794|gb|EGE24728.1| diaminopimelate decarboxylase [Moraxella catarrhalis O35E]
Length = 435
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 157/399 (39%), Positives = 227/399 (56%), Gaps = 29/399 (7%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ + V + E + P Y YS+ + N ++Y A + ++ I YA+KAN+N
Sbjct: 32 DGTLHFDGVSTHALKE-IYGTPLYAYSQRALLENYQSYTDAFDTIDHQICYAVKANSNLA 90
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L K G G +VS EL L+ D K +++G GK +D+ A + + NV+S
Sbjct: 91 ILKTLAKAGAGFDIVSKGELARVLQVA-DAKKVVYSGVGKTADDIEYALKADIHCFNVES 149
Query: 191 EFDLENIVVASRIAGKK---VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+L+ I + +AG++ + LRINPDVD + HPY++TG K++KFGI +E Q
Sbjct: 150 LSELDTI---NEVAGRQNQIARISLRINPDVDAKTHPYISTGMKDNKFGISHE--QAVAA 204
Query: 248 AVKAH--PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
V AH PN LK+VG CH+GS + D F DA ++ ID + +G ++ ++++GGGL
Sbjct: 205 YVYAHHLPN-LKIVGIDCHIGSQLLDTDGFSDALDKLIELIDTLTDKGIKLQHIDLGGGL 263
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR----NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
G+ Y V ID V ++L R L L +EPGRSL+AN L+ V +K
Sbjct: 264 GVRYIDENPVS------IDQVATVLLPRLKQLGLKLYLEPGRSLVANAGVLLTTVDVLKP 317
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKE 420
KNF ++D SM+ELIRP+LY++ I PA + +K +DVVG VCES+DFLGK+
Sbjct: 318 TEFKNFAIVDASMSELIRPALYESQMAI---IPAKLSRDTAKTWDVVGTVCESSDFLGKD 374
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R L + G L V AGAY SMA YN + RP E V
Sbjct: 375 RIL-SLQVGDTLAVTGAGAYGFSMACNYNTRPRPCEVMV 412
>gi|319897770|ref|YP_004135967.1| diaminopimelate decarboxylase, plp-binding [Haemophilus influenzae
F3031]
gi|317433276|emb|CBY81651.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3031]
Length = 415
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 228/396 (57%), Gaps = 10/396 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ +Q + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPIQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARKVYNLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKDYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLAREKAI--YDVVGPVCETSDFLGKQRELSIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY SM+S YN + R E V S +I
Sbjct: 364 IAQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|416052421|ref|ZP_11578278.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992052|gb|EGY33482.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 416
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 221/388 (56%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A+ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKATLERHWHAFNNAFGDHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLAATLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N + +VG CH+GS +T++ F DAA ++ +++++ G ++ +L++GGGLG+ Y T
Sbjct: 190 N-IDIVGMDCHIGSQLTELQPFLDAADRLIVLMEQLKQDGIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L L +I+EPGR++ AN LV V VK+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFSELEIIVEPGRAITANAGILVTKVEYVKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|68249326|ref|YP_248438.1| diaminopimelate decarboxylase [Haemophilus influenzae 86-028NP]
gi|68057525|gb|AAX87778.1| diaminopimelate decarboxylase [Haemophilus influenzae 86-028NP]
Length = 415
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 227/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDMPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|219850725|ref|YP_002465157.1| diaminopimelate decarboxylase [Methanosphaerula palustris E1-9c]
gi|219544984|gb|ACL15434.1| diaminopimelate decarboxylase [Methanosphaerula palustris E1-9c]
Length = 429
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 210/396 (53%), Gaps = 12/396 (3%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIG--YAIKANNNY 130
G L+ E D+ E P Y+ S+ +I ++ Y+ AL S I YA KAN N
Sbjct: 12 GDLFIEGQNCVDLAEQY-GTPLYVTSEDRIRTQMQGYRDALSSYYSDISVLYAAKANGNL 70
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDS 190
+ + L G GA + S E+ LAL+AG DP K +FNG+ K L DL LA + G+ V+VDS
Sbjct: 71 AVFQILASEGAGADVFSSGEVALALKAGMDPHKLLFNGSSKTLMDLALAVELGIRVSVDS 130
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L + + AGK + R+NP ++ HP +ATG +SKFGI ++++
Sbjct: 131 LDELHQLDAVAAEAGKVAEIAFRVNPALEVPTHPKIATGLASSKFGIPHQQIPAAYAEAL 190
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A N +K VG HCH+GS I V F AA +MV +I G ++++L++GGGLGI Y
Sbjct: 191 ACSN-IKPVGIHCHIGSQILDVTPFAKAAEVMVRIAREITDLGIKLEFLDLGGGLGIPYN 249
Query: 311 HTGAVLPKPRNLIDTVRELVLSR------NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
HT P P V + L+ + L +EPGRSL+A++ L+ V VK
Sbjct: 250 HTSETAPSPAEYAAAVMPVFLAGIKECNIHPELWVEPGRSLVADSTVLLATVNSVK-KAH 308
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K F+ +D LIRP +YD+Y I + + A Q + V GP+CE+ D L +R LP
Sbjct: 309 KTFVNVDAGFNLLIRPVMYDSYHEIVVANRADQPIA-GTYTVAGPICETGDLLAVDRALP 367
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G + V D GAY SM+S YN + R E +R
Sbjct: 368 GVQEGDLVAVLDTGAYGFSMSSQYNSRPRCAEVLIR 403
>gi|423341683|ref|ZP_17319398.1| diaminopimelate decarboxylase [Parabacteroides johnsonii
CL02T12C29]
gi|409220571|gb|EKN13526.1| diaminopimelate decarboxylase [Parabacteroides johnsonii
CL02T12C29]
Length = 386
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/372 (38%), Positives = 204/372 (54%), Gaps = 9/372 (2%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
+ PFY Y + + K YA+KAN N +IL + + G GA VSG E
Sbjct: 16 ETPFYFYDIKLLKETLNMVKTEAGKYGYHAHYAVKANANPRILSVIAEYGLGADCVSGGE 75
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVN 209
++ AL AGF K ++ G GK ++ L +F NV+S +LE + + K
Sbjct: 76 IQAALDAGFPACKIVYAGVGKADWEINLGLDNDIFCFNVESAAELEILDELATAKNKVAP 135
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
+ LRINP+VD H + TG K +KFGI +L LD V +H +KL+G HCH+GS I
Sbjct: 136 IALRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLDLV-SHLEHIKLIGIHCHIGSQI 194
Query: 270 TKVDIFRDAAVLMVNYI-DKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVR 327
T + FR V+ VN I +++ A+G +V+ LN GGGLGIDYYH + +P N
Sbjct: 195 TDMAAFR-GLVIRVNEIQEELEARGIKVENLNFGGGLGIDYYHPNHLPIPAFDNYFAVFN 253
Query: 328 ELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386
+L+ R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY
Sbjct: 254 KLLQLRPGQQVHFEPGRSIVAQCGSLISKVLYVKVGETKKFCILDAGFTELIRPAMYDAY 313
Query: 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446
+E ++ D E+ +DVVGP+CES+D GK+ EL RG + + AGAY MAS
Sbjct: 314 HRMENIT---SDEEVEVYDVVGPICESSDVFGKDVELNRAHRGDLIALRSAGAYGEVMAS 370
Query: 447 TYNLKMRPPEYW 458
YN + P Y+
Sbjct: 371 QYNCRKLPVAYY 382
>gi|83951152|ref|ZP_00959885.1| diaminopimelate decarboxylase [Roseovarius nubinhibens ISM]
gi|83839051|gb|EAP78347.1| diaminopimelate decarboxylase [Roseovarius nubinhibens ISM]
Length = 421
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 213/389 (54%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ V PFY+YS + R+ + +ALEG++ ++ YA+KA +N
Sbjct: 8 DGELYAEDVPVAEIAAAV-GTPFYVYSTATLERHFRLFDEALEGIDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L +LG G +VSG E A+ AG + +F+G GK +++ A G+ NV+S
Sbjct: 67 ILKTLARLGAGMDVVSGGEYARAIAAGVPGDRIVFSGVGKTRDEMRAALTGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMAALNEVALELGTRAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARARDVYAQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+++G H+GS +T ++ FR A + + +RA+G ++ L++GGGLGI Y
Sbjct: 187 AMPG-LEVIGIDVHIGSQLTDLEPFRLAYRKVAELTETLRAEGHDIRRLDLGGGLGIPYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P ++E + + IEPGR + N +V+ V VK+ + F+++
Sbjct: 246 RGNEAPPLPVEYGKMIKEELGHLGCEIEIEPGRLVAGNAGLMVSRVIYVKSGEDREFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP++YDA+ I V AE +DVVGPVCES D K R LP + G
Sbjct: 306 DGAMNDLIRPAMYDAHHDIVPVVEPQAGAEQRPYDVVGPVCESGDTFAKGRNLPVLNAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY M+S YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMSSEYNTRPLIPEVLV 394
>gi|406832775|ref|ZP_11092369.1| diaminopimelate decarboxylase [Schlesneria paludicola DSM 18645]
Length = 423
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 218/407 (53%), Gaps = 20/407 (4%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
FS + +G LYCEDV V + E P ++YSK I ++ + A ++ +I Y++
Sbjct: 2 QSFSYR-NGDLYCEDVSVSKLAEQY-GTPLWVYSKAFILGQLKQIQTAFAEVDPVICYSV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+ IL+ +R GC +VSG EL AG + TK +F G GK E++ A + +
Sbjct: 60 KANSTLGILQVIRDAGCSFDVVSGGELYRVKAAGAETTKVVFAGVGKTDEEIRFALESDI 119
Query: 185 FV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ +V+SE +L+ I + G V+LR+NPD+D + H TG K +KFG+ E+ +
Sbjct: 120 LMFDVESEQELDAIAAVAGSMGLVGRVVLRLNPDIDAKTHSKTTTGKKGNKFGMDIERFR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
L A L L G H HLGS I D + A V ++ +R G +++++N+GG
Sbjct: 180 E-LAAKVLRDKRLALKGIHMHLGSPILTTDPYAAAGRKAVEVVEALRRDGHDINWINLGG 238
Query: 304 GLGIDYYHTGAVLPKP---RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
G GI Y LP ++ +V+E L +EPGR ++ N+C LV+ V K
Sbjct: 239 GFGISYRGNEG-LPASAYAEVIVPSVKEA----KCRLALEPGRFVVGNSCVLVSRVVYTK 293
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA---PQDAE-----ISKFDVVGPVCE 412
G K F++ DG+M +LIRP++YD++ + V PA P D E K DVVGP+CE
Sbjct: 294 REGGKLFVIQDGAMNDLIRPAMYDSFHRVWPVKPAVAMPDDVEGEIPGCEKTDVVGPICE 353
Query: 413 SADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
S+D+ K+R LP R L AGAY +M+S YN + R E V
Sbjct: 354 SSDYFAKDRYLPAMKRDDLLATFSAGAYGTAMSSNYNSRPRATELLV 400
>gi|114770083|ref|ZP_01447621.1| diaminopimelate decarboxylase [Rhodobacterales bacterium HTCC2255]
gi|114548920|gb|EAU51803.1| diaminopimelate decarboxylase [alpha proteobacterium HTCC2255]
Length = 421
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 209/388 (53%), Gaps = 3/388 (0%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ EDV + ++ V PFY+YS+ + R+ + +AL G+ +I YA+KAN+N I
Sbjct: 9 GILHAEDVAITEIAAAV-GTPFYVYSQATLMRHFRVFDEALNGMKHLICYAMKANSNIAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L+ L LG G +VSG E A AG K +F+G GK E++ LA + G+ NV+SE
Sbjct: 68 LKILGNLGAGMDVVSGGEYLRAKAAGISGDKIVFSGVGKTREEMALAIKNGIRQFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ + + G + LR+NPDVD + H +ATG +KFGI K Q ++ A
Sbjct: 128 AELKVLNEVALSLGAIAPITLRVNPDVDAKTHAKIATGKSENKFGIPISKAQEVY-SIAA 186
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
+ +VG H+GS +T ++ FR A + +R G + L++GGGLGI Y +
Sbjct: 187 SMEAIDVVGIDVHIGSQLTDLEPFRLAYKKVAELTKMLRQDGHNIRRLDLGGGLGIPYEN 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+ + P P + + E V + + IEPGR L N +V+ V K+ ++F+++D
Sbjct: 247 SNQIPPTPEDYAKVIHETVGDLDCEIEIEPGRLLAGNAGLMVSSVIYNKSGEGRDFMIVD 306
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
+M +LIRP++Y+AY I V EI +D+VGPVCE+ D +R L G
Sbjct: 307 AAMNDLIRPAMYEAYHEIIPVIETTGSPEIRDYDIVGPVCETGDTFANKRALTPVADGEM 366
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 367 VAFRSAGAYGAVMASEYNTRPLIPEVLV 394
>gi|86139003|ref|ZP_01057574.1| diaminopimelate decarboxylase [Roseobacter sp. MED193]
gi|85824234|gb|EAQ44438.1| diaminopimelate decarboxylase [Roseobacter sp. MED193]
Length = 421
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 218/400 (54%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ V PFY+YS + R+ + +ALEG++ ++ YA+KA +N
Sbjct: 8 DGALYAEDVPVAEIAAAV-GTPFYVYSTATLLRHFRLFDEALEGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VS E A AG K +F+G GK +++ A G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSQGEYLRAKAAGVPGDKIVFSGVGKTADEIRCALSGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ I + G+ + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMAVINAVALELGQVAPITIRVNPDVDAKTHAKIATGKSENKFGIPISRAREVYAHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P LK++G CH+GS +T+++ FR A + + +RA G ++ L++GGGLGI Y
Sbjct: 187 TLPG-LKVIGVDCHIGSQLTELEPFRKAYEKIAELTESLRADGHDIHRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P ++E + + IEPGR + N +V+ V VK+ + F+++
Sbjct: 246 RSNEAPPLPVEYGQLIKETLGHLGCEIEIEPGRLIAGNAGLMVSKVIYVKSGEDREFLIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVS-PAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+A+ I V+ PAP E +D+VGPVCE+ D K+R++P G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIVAVNEPAP-GIENRPYDIVGPVCETGDTFAKQRDMPPLAAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY MAS YN + PE V +I P
Sbjct: 365 DLIAFRSAGAYGAVMASEYNSRPLIPEVLVHGDQFAVIRP 404
>gi|255014433|ref|ZP_05286559.1| diaminopimelate decarboxylase [Bacteroides sp. 2_1_7]
gi|410103170|ref|ZP_11298094.1| diaminopimelate decarboxylase [Parabacteroides sp. D25]
gi|409237628|gb|EKN30426.1| diaminopimelate decarboxylase [Parabacteroides sp. D25]
Length = 386
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 201/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIATNGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIINELAAAKNKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K + +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKH-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|378696926|ref|YP_005178884.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
10810]
gi|301169445|emb|CBW29045.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
10810]
Length = 415
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 224/387 (57%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDMPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY SM+S YN + R E V
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLV 391
>gi|148827915|ref|YP_001292668.1| diaminopimelate decarboxylase [Haemophilus influenzae PittGG]
gi|148719157|gb|ABR00285.1| diaminopimelate decarboxylase [Haemophilus influenzae PittGG]
Length = 450
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 225/389 (57%), Gaps = 10/389 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG + +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGNASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKDYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLAREKAI--YDVVGPVCETSDFLGKQRELSIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+ AGAY SM+S YN + R E + R
Sbjct: 364 IAQCSAGAYGASMSSNYNSRARTAEVFSR 392
>gi|338532972|ref|YP_004666306.1| diaminopimelate decarboxylase [Myxococcus fulvus HW-1]
gi|337259068|gb|AEI65228.1| diaminopimelate decarboxylase [Myxococcus fulvus HW-1]
Length = 413
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 210/392 (53%), Gaps = 15/392 (3%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ EDV +Q + E+V P Y+YS +TR+V +A +I Y++KAN+N I
Sbjct: 9 GVLHAEDVPLQAIAESVGT-PTYVYSTATLTRHVRVVTEAFGDRPHLICYSVKANSNLAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L + + G G +VSG EL G D K +F G GK E++ A G+ + NV+S
Sbjct: 68 LRLVAERGGGFDIVSGGELARVRHVGGDARKTVFAGVGKTQEEMEAALAAGILLFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + R G++ LR+NPDVD + H Y++TG K SKFG+ E+ A+ A
Sbjct: 128 EELEALDAVGRRLGRRAPFALRVNPDVDARTHRYISTGLKTSKFGVPFEEAV----ALYA 183
Query: 252 HPNELK---LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+LK G CH+GS +T+ R A + ++ QG + YL++GGGLGI
Sbjct: 184 RAKKLKGLVATGLDCHIGSQLTQTAPLRAALAKVAGLYSALKEQGHPLAYLDVGGGLGIT 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y + P P TV + LI+EPGR+L+ N L+ V K ++F+
Sbjct: 244 Y--SDETPPSPDEYARTVLAAAGATGATLIVEPGRALVGNAGVLLTRVLYRKKTPARHFV 301
Query: 369 VIDGSMAELIRPSLYDAYQHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
V+D M +L+RP+LY+A+ ++ LV + E+ DVVGPVCES D L K R L P
Sbjct: 302 VVDAGMNDLLRPALYEAHHGLQPLVKRRGKAVEV---DVVGPVCESTDVLAKARPLVLPR 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G AGAY MSM+STYN + RP E V
Sbjct: 359 AGELFAFMSAGAYGMSMSSTYNSRPRPAEVLV 390
>gi|56552664|ref|YP_163503.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|13124113|sp|Q9Z661.1|DCDA_ZYMMO RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|4378171|gb|AAD19416.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56544238|gb|AAV90392.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 421
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 10/389 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---SIIGYA 123
FS K +G L ED+ + ++ P Y+YS +T + +AL+G S++ +A
Sbjct: 4 FSLK-NGTLCVEDIPLPEIAAQY-GTPCYVYSHSYLTERARRFTKALDGAGKGKSLVAFA 61
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN + IL K G GA +VS E+R A+ AG P + +F+G GK E++ A + G
Sbjct: 62 VKANPSQAILASFAKEGLGADVVSAGEIRRAVHAGIPPERIVFSGVGKTAEEMRYALEIG 121
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S ++E + + GKK V LRINPDVDP H +ATG ++KFGI E
Sbjct: 122 IGQFNIESVSEIEMLAEVATSLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEDA 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + ++P+ LK+ G H+GS IT + F AA + I + G ++ ++G
Sbjct: 182 LSAYEKLASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHAIETADLG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLG+ Y P + ++ + N LI EPGRSLIAN L++ V +K +
Sbjct: 241 GGLGVRYKDDQPEPPSVEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGVLLSKVIRIKES 300
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
T F+++D +M +L+RP+LYDAY I+ V+P+ A+ + D+VGPVCE+ D + R
Sbjct: 301 KTARFVILDAAMNDLVRPTLYDAYHEIKAVTPS---AQTYQADIVGPVCETGDIFARNRS 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+ + + AGAY +MAS YN +
Sbjct: 358 ISAVKADDLMAIMSAGAYGATMASAYNSR 386
>gi|430805789|ref|ZP_19432904.1| diaminopimelate decarboxylase [Cupriavidus sp. HMR-1]
gi|429501948|gb|ELA00272.1| diaminopimelate decarboxylase [Cupriavidus sp. HMR-1]
Length = 419
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 230/398 (57%), Gaps = 13/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + DG L E V + + + P ++YS+ +T AY A +G N+ + YA+KA
Sbjct: 4 FFSRRDGILAVEQVPLTRIADQFGS-PTFVYSRAALTTAYNAYAAACKGHNAHVQYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L+ +LG G +VSG EL + AG DP K +F+G K + D+ LA V
Sbjct: 63 NSNLAVLQVFAQLGAGFDIVSGGELLRVIAAGGDPRKVVFSGVAKNIADMELALSHDVRG 122
Query: 186 VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +L+ + VA R+ GK+ V LRINPDVD + HPY++TG K +KFG+ E +
Sbjct: 123 FNVESIPELDRLNAVAGRL-GKRARVSLRINPDVDAKTHPYISTGLKANKFGVAFEDVLP 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A PN +++ G CH+GS IT+V + +A +++ ++ + A+G +++++++GGG
Sbjct: 182 TYRAAAALPN-IEVTGIDCHIGSQITEVAPYLEALDKVLDVVEALEAEGIKLEHIDVGGG 240
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
LGI Y P T+ + V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 241 LGITY--NDETPPDITKFATTLIDRVAARGHGHREVLFEPGRSLVGNAGVLLTRVEFLKP 298
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y+A+ IE V+P DA + +DVVGPVCES D+LG++R
Sbjct: 299 GAAKNFCIVDAAMNDLARPAMYEAFHRIEPVAPR-NDAGV-MYDVVGPVCESGDWLGRDR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L G L V AGAY M+S YN + R E V
Sbjct: 357 TLAV-QAGDLLAVMSAGAYGFVMSSNYNTRGRAAEVMV 393
>gi|77461719|ref|YP_351226.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf0-1]
gi|398974560|ref|ZP_10685149.1| diaminopimelate decarboxylase [Pseudomonas sp. GM25]
gi|77385722|gb|ABA77235.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf0-1]
gi|398141518|gb|EJM30438.1| diaminopimelate decarboxylase [Pseudomonas sp. GM25]
Length = 415
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 222/389 (57%), Gaps = 10/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L ++G G +VS EL L AG P K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARIGAGFDIVSRGELERVLAAGGSPDKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + V + G + + LR+NPDVD HPY++TG K +KFGI + ++ A
Sbjct: 128 DELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA-- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
AH L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 186 AHLPNLEVVGVDCHIGSQLTTLPPFLDALDRLLDLVDRLGDCGIHLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE ++ R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLVGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P++ +DVVGP+CE+ DFL KEREL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTPVK--PRETAARTYDVVGPICETGDFLAKERELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|409098809|ref|ZP_11218833.1| diaminopimelate decarboxylase [Pedobacter agri PB92]
Length = 385
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/361 (36%), Positives = 202/361 (55%), Gaps = 4/361 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + + + +A + I YA+KAN N +LE ++++G GA VS E+R
Sbjct: 16 PFYYYDTDLLQKTLNTCAEAAKPYQFHIHYALKANFNAVLLEQIKQIGFGADCVSAGEVR 75
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
A+ GFD K +F G GK +++ A +F NV+S +LE + + GK V
Sbjct: 76 RAVEVGFDNKKIVFAGVGKSDKEINEALDLDIFCFNVESIQELEVLNELAAAKGKVAQVA 135
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+RINP+VD H + TG +KFGI + L + +K+ N L+ +G H H+GS IT
Sbjct: 136 IRINPNVDAHTHHNITTGLDENKFGINSWDLPECAETLKSSKN-LRFIGIHFHIGSQITN 194
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV- 330
+D++++ V + + +GF V+ LN+GGGLGIDY+H +P ++ ++ +
Sbjct: 195 LDVYKNLCVRVNEFCTWFEDKGFVVEVLNVGGGLGIDYHHPDHQIPDFKSYFKIFKDFLE 254
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
+ N + E GR+L+ + L+ +K KNF+V+D M EL+RP+LY AY IE
Sbjct: 255 IKPNQEVHFELGRALVGQSASLITRALYIKNGKKKNFVVLDAGMTELMRPALYQAYHKIE 314
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
++ + EI K+D+VGP+CES D GKE E PT RG + AGAY MAS YNL
Sbjct: 315 NLTRG-NETEIVKYDIVGPICESTDCFGKEVEQPTSFRGDIFAIRSAGAYGEVMASKYNL 373
Query: 451 K 451
+
Sbjct: 374 R 374
>gi|407780946|ref|ZP_11128166.1| diaminopimelate decarboxylase [Oceanibaculum indicum P24]
gi|407208372|gb|EKE78290.1| diaminopimelate decarboxylase [Oceanibaculum indicum P24]
Length = 432
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 218/401 (54%), Gaps = 10/401 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV + + E V P ++YS I +A AL + I YA+KAN+N
Sbjct: 8 DGRLYAEDVPLARIAEQV-GTPVFVYSATSIEAQYDALASALADMKVGICYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
++ L G GA +VS ELR AL AG P+K +F G GK E++ A + G+ N++S
Sbjct: 67 VIATLAARGAGADVVSEGELRRALAAGVHPSKIVFAGVGKTAEEMAFALKAGIHQFNLES 126
Query: 191 EFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+LE + VA R+ G V +R+NPDVD + H + TG K +KFGI E+ +
Sbjct: 127 GPELELLNEVAGRL-GLVAPVAIRVNPDVDAKTHAKITTGKKENKFGIEIEQAKSVYARA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P+ + VG H+GS +T + +R A M + + +RA+G ++ +++GGG+GIDY
Sbjct: 186 AALPH-IDPVGVAMHIGSQLTDLAPYRAAYRRMADLVKALRAEGHDIRRVDLGGGIGIDY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
V VRE + +I EPGR L+ N L+ V VK K F++
Sbjct: 245 RGDHTV--DLAGYAAIVREEIAPLGAEMICEPGRLLVGNAGVLLTSVIYVKQGTAKRFVI 302
Query: 370 IDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+D +M +LIRP+LY+A+ I + + AP+ + D+VGP+CES D+L K+R LP
Sbjct: 303 VDAAMNDLIRPTLYEAHHDIVMERAGAPESPHPA--DIVGPICESGDYLAKDRVLPELAP 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G L V AGAY M S+YN ++ PE VR ++ P
Sbjct: 361 GDLLAVKSAGAYGAVMGSSYNTRLLAPEVLVRGGDFAVVRP 401
>gi|229844596|ref|ZP_04464735.1| diaminopimelate decarboxylase [Haemophilus influenzae 6P18H1]
gi|229812310|gb|EEP48000.1| diaminopimelate decarboxylase [Haemophilus influenzae 6P18H1]
Length = 415
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 227/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + G+ NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIIEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
A AY SM+S YN + R E V S +I
Sbjct: 365 AQCSAAAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|52548561|gb|AAU82410.1| diaminopimelate decarboxylase [uncultured archaeon GZfos17C7]
Length = 425
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 213/387 (55%), Gaps = 14/387 (3%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLN--SIIGYAIKANNNYKILEHLRKL 139
DV+E E+ P Y+ + ++ N ++YK A E N + I YA+KAN N +L+ L
Sbjct: 14 DVVELAERYGTPLYVTDENKLRNNFKSYKNAFETTNIDTDIYYAVKANGNLALLKILASE 73
Query: 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVV 199
G GA + S EL L AG K +FNGN K +DL A + GV V+VDS +L +
Sbjct: 74 GAGADVFSAGELELTKLAGIPAEKILFNGNSKSDDDLKEAVESGVRVSVDSVDELRALSA 133
Query: 200 ASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLV 259
+ G++V + +R+NPDV P VH +ATG K SKFGI + + + PN L L
Sbjct: 134 VANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVCEEAEKLPNVL-LA 192
Query: 260 GAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH-TGAVLPK 318
G HCH+GS I + +F +A M+ ++++ +G ++ ++++GGGLGI Y A P
Sbjct: 193 GLHCHIGSQILDISVFGEATEKMMALVERMYERGMKLKFVDLGGGLGIGYRQEEKATAPT 252
Query: 319 PRNLIDTVRELV------LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P +L + + L L +L L++EPGRS++ + L++ V VK KNF+ ID
Sbjct: 253 PEDLAEMILPLFENKIRDLGISLKLVLEPGRSIVGASTILLSRVNAVK-RANKNFVAIDA 311
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
LIRP +Y AY + + + + A + VVG VCES D + K+R LP +RG +
Sbjct: 312 GFNLLIRPVMYGAYHEVVVANKVNERAS-ELYTVVGNVCESGDIMAKDRMLPKVERGDLV 370
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ D GAY SM+S YN + R E V
Sbjct: 371 AILDTGAYGFSMSSQYNGRPRCAEVLV 397
>gi|424925590|ref|ZP_18348951.1| diaminopimelate decarboxylase [Pseudomonas fluorescens R124]
gi|404306750|gb|EJZ60712.1| diaminopimelate decarboxylase [Pseudomonas fluorescens R124]
Length = 415
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 148/389 (38%), Positives = 222/389 (57%), Gaps = 10/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + P Y+YS+ I AY AL G+ ++ YA+KAN+N +
Sbjct: 9 GELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCYAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI + ++ A
Sbjct: 128 DELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA-- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
AH L+++G CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 186 AHLPNLEVIGVDCHIGSQLTTLPPFLDALDRLLDLVDRLGDCGIHLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLNGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ I V P+D+ ++DVVGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDITAVK--PRDSAARQYDVVGPICETGDFLAKDRELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|421597200|ref|ZP_16040863.1| diaminopimelate decarboxylase [Bradyrhizobium sp. CCGE-LA001]
gi|404270690|gb|EJZ34707.1| diaminopimelate decarboxylase [Bradyrhizobium sp. CCGE-LA001]
Length = 421
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/399 (35%), Positives = 212/399 (53%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFADAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG +K +F+G GK +L A + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPASKILFSGVGKTEAELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATEMGKTARISVRVNPDVDAGTHAKISTGKSENKFGIPIAHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G + +++ GGGLGI YY
Sbjct: 187 RLPG-IEVTGTDVHIGSQITDLSKMETAFRILSEFVQTLRADGHNISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ A + A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQAAKGAATITADVVGPVCETGDYLALDRTLPTPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LLAIMTAGAYGAVQAGTYNTRPLVPEVLVKDDQYAVVRP 404
>gi|344941886|ref|ZP_08781174.1| diaminopimelate decarboxylase [Methylobacter tundripaludum SV96]
gi|344263078|gb|EGW23349.1| diaminopimelate decarboxylase [Methylobacter tundripaludum SV96]
Length = 415
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 225/386 (58%), Gaps = 13/386 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED+ V D++ P Y+YS+ + R+ +A+ QA +I YA+KAN+N IL
Sbjct: 11 LFAEDIAVSDIVYKY-GSPCYIYSRATLERHWKAFDQAFGEQAHLICYAVKANSNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL + AG DP K +F+G GK ++++ A + G+ N++ +
Sbjct: 70 LLARLGSGFDIVSLGELERVITAGGDPKKIVFSGVGKREDEILAALKIGIRCFNIEVSGE 129
Query: 194 LENIVVASRIAGKK---VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L+ I +R+AG+ V R+NPDVD + HPY++TG K +KFGI ++
Sbjct: 130 LDRI---NRLAGQLGVIAPVSFRVNPDVDAKTHPYISTGLKENKFGIDIQQALTEYRRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P+ + ++G CH+GS +T+ F DA +++ + + A+G ++ +L++GGGLGI Y
Sbjct: 187 AMPH-ISVIGIDCHIGSQLTETRPFLDALDKILDLVAALEAEGIKLHHLDLGGGLGICYK 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P I V + + +++EPGR+++ N LV V +K KNF ++
Sbjct: 246 DEQP--PEPAEYIQAVLARLGQTDFEILLEPGRAIVGNAGILVTQVEYLKPTANKNFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY A+Q+I V+ AE + +D+VGPVCE+ DFLGK+R L +G
Sbjct: 304 DAAMNDLVRPALYSAWQNIIPVNRQNNAAE-ATWDIVGPVCETGDFLGKDRTLKIA-QGD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPE 456
L + +GAY +M+S YN + R E
Sbjct: 362 LLAIRSSGAYGFTMSSNYNSRPRLAE 387
>gi|339504610|ref|YP_004692030.1| diaminopimelate decarboxylase LysA [Roseobacter litoralis Och 149]
gi|338758603|gb|AEI95067.1| diaminopimelate decarboxylase LysA [Roseobacter litoralis Och 149]
Length = 421
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 218/400 (54%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V ++ TV PFYLYS + R+ + +AL+G++ ++ YA+KA +N
Sbjct: 8 DGVLHAEDVPVPEIAATV-GTPFYLYSTATLLRHFRLFDEALDGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VSG E A AG K +F+G GK ++ LA + G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSGGEYLRAKAAGVPGDKIVFSGVGKTAAEIRLALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + + G + +R+NPDVD + H +ATG +KFGI + A+
Sbjct: 127 EPEMEVLNATALAMGVTAPITIRVNPDVDAKTHAKIATGKSENKFGIPISRAHEVY-ALA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A L+++G H+GS +T + F A + ++RAQG + L++GGGLGI Y
Sbjct: 186 ASLKGLEVIGIDVHIGSQLTDLAPFEAAYDKVAELTGQLRAQGHNIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + ++ + + IEPGR ++ N +V+ V VK+ ++F++I
Sbjct: 246 RDNQAPPLPSDYGAMIKRKLGHLGCEIEIEPGRLIVGNAGIMVSEVIYVKSGEDRDFLII 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+AY I +V P P ++ KFD+VGPVCES D + R +P G
Sbjct: 306 DGAMNDLIRPAMYEAYHDIIPVVEPDPGIEQV-KFDIVGPVCESGDTFARARVMPPVAAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY M+S YN + PE V +I P
Sbjct: 365 ELVAFRSAGAYGAVMSSEYNSRPLIPEVLVHEDQFAVIRP 404
>gi|398990084|ref|ZP_10693291.1| diaminopimelate decarboxylase [Pseudomonas sp. GM24]
gi|399012414|ref|ZP_10714735.1| diaminopimelate decarboxylase [Pseudomonas sp. GM16]
gi|398115536|gb|EJM05317.1| diaminopimelate decarboxylase [Pseudomonas sp. GM16]
gi|398145418|gb|EJM34204.1| diaminopimelate decarboxylase [Pseudomonas sp. GM24]
Length = 415
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 222/389 (57%), Gaps = 10/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + P Y+YS+ I AY AL G+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI + ++ A
Sbjct: 128 DELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA-- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
AH L++VG CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 186 AHLPNLEVVGVDCHIGSQLTTLPPFLDALDRLLDLVDRLGDCGIHLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAADYIKAVRERLNGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+ K+D+VGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVK--PRDSAARKYDIVGPICETGDFLAKDRELALAE-GD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|217969261|ref|YP_002354495.1| diaminopimelate decarboxylase [Thauera sp. MZ1T]
gi|217506588|gb|ACK53599.1| diaminopimelate decarboxylase [Thauera sp. MZ1T]
Length = 423
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 213/389 (54%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E++ + ++ P Y+YS+ + A++ AL G +++ YA+KAN+N
Sbjct: 17 DGALWLEELPLAEIAARFGT-PTYVYSRAALAAAFAAWQDALAGRRALVCYAVKANSNLG 75
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
IL +LG G +VSG EL L AG K +F+G GK ++ A G+ NV+S
Sbjct: 76 ILSVFARLGAGFDIVSGGELARVLAAGGRADKVVFSGVGKTRAEMRQALLAGIRCFNVES 135
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE++ + G + V LR+NPDVDP+ HPY++TG K +KFG+
Sbjct: 136 AAELEHLDAVAGELGVRAPVSLRVNPDVDPKTHPYISTGLKGNKFGVAFADAPAIYRRAA 195
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L + G CH+GS + +AA + + ++ + A G ++++++GGGLGI Y
Sbjct: 196 ALPN-LHITGVACHIGSQLLDRAPIAEAAQKLRDLVEHLAADGMALEHIDLGGGLGIRYR 254
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + + E+ R L EPGRSL+ N L+ + +K TKNF ++
Sbjct: 255 DE--TPPPVAEYLAPLLEVFAGRAEELCFEPGRSLVGNAGLLLTRIEYLKPGETKNFAIV 312
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L RP+LYDA+ E+V A + S +DVVGP+CES DFL +ER L + G
Sbjct: 313 DAAMNDLARPALYDAWH--EVVEVAARTHAPSTYDVVGPICESGDFLARERSLAVAE-GD 369
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY M+MAS YN + R E V
Sbjct: 370 LLAILSAGAYGMTMASNYNTRPRAAEILV 398
>gi|289192693|ref|YP_003458634.1| diaminopimelate decarboxylase [Methanocaldococcus sp. FS406-22]
gi|288939143|gb|ADC69898.1| diaminopimelate decarboxylase [Methanocaldococcus sp. FS406-22]
Length = 435
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/387 (37%), Positives = 222/387 (57%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQI----TRNVEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI R VEA+K+ E G I+ YA KAN N I
Sbjct: 21 DAIELAEKFGTPLYVMSEEQIKINYNRYVEAFKRYEEETGKEFIVAYAYKANANLAITRL 80
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
L KLGCGA +VSG EL +A +G K +FNGN K E++++ + + NVDS +L
Sbjct: 81 LAKLGCGADVVSGGELYIAKLSGVPSDKIVFNGNCKTKEEIIMGIEAKIRAFNVDSISEL 140
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--H 252
I ++ G+ NV RINP+VDP+ HP ++TG K +KFG+ E + A+K
Sbjct: 141 ILINETAKEIGEIANVAFRINPNVDPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALE 199
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+K+VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLGI YY
Sbjct: 200 MENVKVVGVHCHIGSQLTDISPFVEETRKVMDFVVELKKEGIEIEDVNLGGGLGIPYYKD 259
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+ P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 260 KEI-PTQKDLADAIINTMLQYQDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKW 318
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++ID M +++RP++Y+AY HI ++ +D E V G +CES+D G++REL +
Sbjct: 319 VMIDAGMNDMMRPAMYEAYHHI--INCKVKD-EKEVVSVAGGLCESSDVFGRDRELDKVE 375
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 376 VGDILAIFDVGAYGISMANNYNARGRP 402
>gi|121997989|ref|YP_001002776.1| diaminopimelate decarboxylase [Halorhodospira halophila SL1]
gi|121589394|gb|ABM61974.1| diaminopimelate decarboxylase [Halorhodospira halophila SL1]
Length = 418
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 221/395 (55%), Gaps = 12/395 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F++ AD L+ E + + ++ E P Y+YS+ I Y+ AL G+ + YA+KA
Sbjct: 7 FARYAD-RLWAEALPLDELAERF-GTPCYVYSRAAIEERWALYRSAL-GVAGDVCYAVKA 63
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N N +L+ L + G G +VSG EL L AG D + +F+G GK +++ A Q G+
Sbjct: 64 NGNLALLQLLARHGAGFDIVSGGELERVLHAGGDAARVVFSGVGKGTDEIRRALQAGIRC 123
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-W 244
NV+S +LE I + V LR+NPDV+P+ HPY+ATG SKFGI E+ +
Sbjct: 124 FNVESAAELERIASVAATENTPAPVALRVNPDVNPETHPYIATGLAQSKFGIALEEAEAL 183
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
+L A A+ L++ G CH+GS + V +AA + +++ QG +D+++ GGG
Sbjct: 184 YLQA--ANDPRLEVRGIACHIGSQLLSVAPLTEAAERLAALARRLQEQGISLDHIDAGGG 241
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P P I+ + + +++++EPGR+++A L+ + +K NG
Sbjct: 242 LGVHYIDEQP--PTPAEHIEAISAPLRDLGVSVLVEPGRAIVAEAGILLTRIEYLKHNGG 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K F ++D M + +RP+LYDA +E V+P+ +AE+ DVVGPVCESAD ++ LP
Sbjct: 300 KEFAIVDAGMNDYLRPALYDAAHTLEAVTPS--EAELRPVDVVGPVCESADTFARDCTLP 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY MAS YN + RPPE V
Sbjct: 358 AAAGGL-LAIRSAGAYGAVMASQYNARPRPPEVLV 391
>gi|154494211|ref|ZP_02033531.1| hypothetical protein PARMER_03559 [Parabacteroides merdae ATCC
43184]
gi|154086073|gb|EDN85118.1| diaminopimelate decarboxylase [Parabacteroides merdae ATCC 43184]
Length = 386
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 205/374 (54%), Gaps = 9/374 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + + K + YA+KAN N +IL + + G GA VSG E++
Sbjct: 18 PFYFYDITLLKETLNTVKTEAGKYGYHVHYAVKANANPRILSIIAEYGLGADCVSGGEIQ 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K ++ G GK ++ L +F NV+S +LE + + K ++
Sbjct: 78 AALDAGFPARKIVYAGVGKTDWEINLGLDNDIFCFNVESAAELEILEELAAAKNKVASIA 137
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD V +KL+G HCH+GS IT
Sbjct: 138 LRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLDLV-CRLEHIKLIGIHCHIGSQITD 196
Query: 272 VDIFRDAAVLMVNYI-DKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVREL 329
+ FR V+ VN I +++ A+G +V+ LN GGGLGIDYYH + +P N +L
Sbjct: 197 MAAFR-GLVIRVNEIQEELEARGIKVENLNFGGGLGIDYYHPNHLPIPAFDNYFAVFNKL 255
Query: 330 VLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY
Sbjct: 256 LQLRPGQQVHFEPGRSIVAQCGSLISKVLYVKVGETKKFCILDAGFTELIRPAMYDAYHR 315
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
+E ++ D E+ +DVVGP+CES+D GK+ EL RG + + AGAY MAS Y
Sbjct: 316 MENIT---SDEEVEVYDVVGPICESSDVFGKDVELNRAHRGDLIALRSAGAYGEVMASQY 372
Query: 449 NLKMRPPEYWVRSL 462
N + P ++ ++
Sbjct: 373 NCRKLPTAHYSDTM 386
>gi|423724736|ref|ZP_17698878.1| diaminopimelate decarboxylase [Parabacteroides merdae CL09T00C40]
gi|409236696|gb|EKN29502.1| diaminopimelate decarboxylase [Parabacteroides merdae CL09T00C40]
Length = 386
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 205/374 (54%), Gaps = 9/374 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + + K + YA+KAN N +IL + + G GA VSG E++
Sbjct: 18 PFYFYDITLLKETLNTVKTEAGKYGYHVHYAVKANANPRILSIIAEYGLGADCVSGGEIQ 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K ++ G GK ++ L +F NV+S +LE + + K ++
Sbjct: 78 AALDAGFPARKIVYAGVGKADWEINLGLDNDIFCFNVESAAELEILEELAAAKNKVASIA 137
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD V +KL+G HCH+GS IT
Sbjct: 138 LRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLDLV-CRLEHIKLIGIHCHIGSQITD 196
Query: 272 VDIFRDAAVLMVNYI-DKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVREL 329
+ FR V+ VN I +++ A+G +V+ LN GGGLGIDYYH + +P N +L
Sbjct: 197 MAAFR-GLVIRVNEIQEELEARGIKVENLNFGGGLGIDYYHPNHLPIPAFDNYFAVFNKL 255
Query: 330 VLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY
Sbjct: 256 LQLRPGQQVHFEPGRSIVAQCGSLISKVLYVKVGETKKFCILDAGFTELIRPAMYDAYHR 315
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
+E ++ D E+ +DVVGP+CES+D GK+ EL RG + + AGAY MAS Y
Sbjct: 316 MENIT---SDEEVEVYDVVGPICESSDVFGKDVELNRAHRGDLIALRSAGAYGEVMASQY 372
Query: 449 NLKMRPPEYWVRSL 462
N + P ++ ++
Sbjct: 373 NCRKLPTAHYSDTM 386
>gi|405355768|ref|ZP_11024880.1| Diaminopimelate decarboxylase [Chondromyces apiculatus DSM 436]
gi|397091040|gb|EJJ21867.1| Diaminopimelate decarboxylase [Myxococcus sp. (contaminant ex DSM
436)]
Length = 413
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 208/390 (53%), Gaps = 11/390 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ EDV + + E+V P Y+YS +TR+V +A +I Y++KAN+N I
Sbjct: 9 GVLHAEDVPLAAIAESVGT-PTYVYSTATLTRHVRVVTEAFGDRPHLICYSVKANSNLAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L + G G +VSG EL AG D K +F G GK E++ A G+ + NV+S
Sbjct: 68 LRLIADQGGGFDIVSGGELARVRHAGGDVAKTVFAGVGKTQEEMEAALSAGILLFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + R G++ LR+NPDVD + H Y++TG K SKFG+ E + + A K
Sbjct: 128 EELEALDAVGRRLGRRAPFALRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYARAKK 187
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
L G CH+GS +T+ R A + ++AQG + YL++GGGLGI Y
Sbjct: 188 M--KGLVATGLDCHIGSQLTQTAPMRAALSKVAGLYTALKAQGHPLAYLDVGGGLGITY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P TV + LI+EPGR+L+ N L+ V K ++F+V+
Sbjct: 245 -SDETPPSPDEYARTVLAAAGATGATLILEPGRALVGNAGVLLTRVLYRKKTPARHFVVV 303
Query: 371 DGSMAELIRPSLYDAYQHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D M +L+RP+LY+A+ ++ LV + E+ DVVGPVCES D L K R L P G
Sbjct: 304 DAGMNDLLRPALYEAHHGLQPLVKRRGKAVEV---DVVGPVCESTDVLAKARPLVLPQAG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY MSM+STYN + RP E V
Sbjct: 361 ELFAFMSAGAYGMSMSSTYNSRPRPAEVLV 390
>gi|409204087|ref|ZP_11232286.1| diaminopimelate decarboxylase [Pseudoalteromonas flavipulchra JG1]
Length = 417
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 150/391 (38%), Positives = 219/391 (56%), Gaps = 10/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + + E P Y+YSK + R+ A+ A G ++ YA+KAN+N
Sbjct: 8 DGELFAEDVAITTIAEQY-GTPCYVYSKKTLARHYHAFTDAAAGHPHLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L+AG DP K +F+G K +++ A + G+ NV+S
Sbjct: 67 VLNVLAQLGSGFDIVSKGELARVLKAGGDPQKVVFSGVAKTEDEIAFALETGIKCFNVES 126
Query: 191 EFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L I VA+R+ K + LR+NPD+D + HPY++TG K +KFGI +
Sbjct: 127 IAELHRISEVATRL-DKIAPISLRVNPDIDAKTHPYISTGLKENKFGIDIKAAFDVYQLA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P LK+VG H+GS + +V+ F A ++ I ++ G + +L+IGGGLG+ Y
Sbjct: 186 YALPG-LKVVGIDFHIGSQLVEVNPFLAALDKVLALISQLEKAGIYLHHLDIGGGLGVPY 244
Query: 310 YHTGAVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
G P P ++ L +L LI EPGR++ AN LV V +K K+F
Sbjct: 245 --DGEKPPHPSAYAAEIKARLAQFNDLELIFEPGRAIAANAGVLVTKVEFIKPTEHKHFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D M +++RPSLY A+Q+I V+P D + +DVVGPVCE+ DFLGK+R L
Sbjct: 303 IVDAGMNDMLRPSLYQAWQNIVPVTPR-DDVDAINYDVVGPVCETGDFLGKDRVLKI-KA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LV AGAY +M+S YN + R E V
Sbjct: 361 GDLLVQRSAGAYGFTMSSNYNSRPRCAEVMV 391
>gi|110678901|ref|YP_681908.1| diaminopimelate decarboxylase [Roseobacter denitrificans OCh 114]
gi|109455017|gb|ABG31222.1| diaminopimelate decarboxylase [Roseobacter denitrificans OCh 114]
Length = 421
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 220/400 (55%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V ++ V PFYLYS + R+ + +AL+G++ ++ YA+KA +N
Sbjct: 8 DGVLHAEDVSVPEIAAAV-GTPFYLYSTATLLRHFRLFDEALDGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VSG E A AG K +F+G GK ++ LA + G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSGGEYLRAKAAGVPGDKIVFSGVGKTAAEIRLALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + A+ G + +R+NPDVD + H +ATG +KFGI + + A+
Sbjct: 127 EPEMEVLNAAALEMGVTAPITIRVNPDVDAKTHAKIATGKSENKFGIPISRAREVY-ALA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A L+++G H+GS +T++ F A + +++RA+G + L++GGGLGI Y
Sbjct: 186 ASMKGLEVIGIDVHIGSQLTELAPFEAAYDKVAELTEQLRAEGHNIRRLDLGGGLGIPYA 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + ++ + + IEPGR ++ N +V+ V VK+ ++F++I
Sbjct: 246 RDNQAPPLPSDYGAMIKRKLGHLGCEIEIEPGRLIVGNAGIMVSEVIYVKSGEDRDFLII 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+AY I +V P P E KFD+VGPVCE+ D + R +P G
Sbjct: 306 DGAMNDLIRPAMYEAYHDIIPVVEPDP-GVEQVKFDIVGPVCETGDTFARARIMPPVAAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY M+S YN + PE V +I P
Sbjct: 365 ERVAFRSAGAYGAVMSSEYNSRPLIPEVLVHEDQFAVIRP 404
>gi|150008634|ref|YP_001303377.1| diaminopimelate decarboxylase [Parabacteroides distasonis ATCC
8503]
gi|298376070|ref|ZP_06986026.1| diaminopimelate decarboxylase [Bacteroides sp. 3_1_19]
gi|149937058|gb|ABR43755.1| diaminopimelate decarboxylase [Parabacteroides distasonis ATCC
8503]
gi|298267107|gb|EFI08764.1| diaminopimelate decarboxylase [Bacteroides sp. 3_1_19]
Length = 385
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 200/373 (53%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K + YA+KAN N +IL + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDVVKTESGKYGYHVHYAVKANANPRILSIIAANGLGADCVSGGEVQ 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +L I + K ++
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELGIINELAAAKNKVASIA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD +K N +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGGVLDKLKEMKN-VKLIGIHSHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + +++ A G V+ LN GGGLGIDYYH + +P N + +L+
Sbjct: 196 MSSFRNLVIRFNEIQEELEAHGVTVENLNFGGGLGIDYYHPNHLSIPAFDNYFAAIHKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 QVRPGQQVHFEPGRSIVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D + +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEAVETYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRHLPKAYYSDTI 385
>gi|410631391|ref|ZP_11342066.1| diaminopimelate decarboxylase [Glaciecola arctica BSs20135]
gi|410148837|dbj|GAC18933.1| diaminopimelate decarboxylase [Glaciecola arctica BSs20135]
Length = 423
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 217/394 (55%), Gaps = 9/394 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E ++D+ + + PFYLYS +I N AL LN+ I YA+KAN+N
Sbjct: 8 NGTLFIEKTSIEDLTQEL-ATPFYLYSNEEICNNYHKLNNALGNLNAQICYAVKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL L +G GA +VS EL+ AL AG K +F+G GK +++ A + G+F NV+S
Sbjct: 67 ILTLLASMGSGADVVSEGELKRALSAGIAANKIVFSGVGKTSQEITFALKSGIFQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAV 249
E +L++I + N+ +RINPD+ H ++TG +KFGI + + L+ + A
Sbjct: 127 EPELKHISELCVLLNLTANIAIRINPDIAADTHEKISTGKAENKFGIEHTRTLEIYAYAA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
K P +K+ G H+GS I + F + + K++ G +++ ++IGGGLG+ Y
Sbjct: 187 KL-PG-IKVQGIDVHIGSQINDLTPFEATFKRLAELVIKLKKAGHDINVIDIGGGLGVTY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
++ + + + + N +I+EPGRS++A+ LV + +KT TK F++
Sbjct: 245 NPEQDKKYDLQHYANLIHQYLAPLNCKIIVEPGRSILASAGVLVTKINYIKTTPTKQFLI 304
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAE-ISKFDVVGPVCESADFLGKERELPTPDR 428
+D M + RPSLYDAY I P Q + + +D+VGPVCE+ D K R +P +
Sbjct: 305 LDAGMNDFARPSLYDAYHQI---MPIKQHSTGETSYDIVGPVCETGDTFAKSRNMPIVAQ 361
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL 462
G LV+ D GAY +M+STYN + E V+ L
Sbjct: 362 GDYLVIKDTGAYGAAMSSTYNTRPLIREVMVKGL 395
>gi|347758202|ref|YP_004865764.1| diaminopimelate decarboxylase [Micavibrio aeruginosavorus ARL-13]
gi|347590720|gb|AEP09762.1| diaminopimelate decarboxylase [Micavibrio aeruginosavorus ARL-13]
Length = 431
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 213/399 (53%), Gaps = 11/399 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL-----NSIIG 121
F+ DG L + V V D++ P Y+YS ++ NV A K A E +I
Sbjct: 2 FTTGPDGRLMADHVAVTDLVRD-HGSPLYVYSASRMRDNVNALKDACESALPADRQPLIA 60
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
+A KAN+N +L ++G GA +VSG EL A+RAG DP K +F+G GK +++ A
Sbjct: 61 FATKANSNLAVLNLFAQMGLGADVVSGGELHRAIRAGIDPGKIVFSGVGKNDDEIAAALD 120
Query: 182 EGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
G+ +NV+SE +L I +R K+ V R+NPDVD H + TG ++KFG+
Sbjct: 121 HGILQINVESEPELNRIADIARRKNKRARVAFRLNPDVDAGTHEKITTGRDDNKFGLPAA 180
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
++ ++ L VG H+GS +T +D + +A + +++ ++R G +V +
Sbjct: 181 RVAALYQQSQSD-MFLDPVGISLHIGSQLTSLDPYAEAFQKLSDFVYELRNNGMDVRRTD 239
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
+GGGLGI Y A P + +R+LVL N +I+EPGR L+ L + V VK
Sbjct: 240 LGGGLGIVYEDEDA--PCLNSYAALIRDLVLPLNTEIILEPGRLLVGKAGLLASRVLYVK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
T ++V+D M +L+RP+LYDA+ I P ++ + +DVVGPVCE++D +
Sbjct: 298 ETDTHRYLVLDAGMNDLMRPALYDAFHAIRPAGPQ-REGDYMTYDVVGPVCETSDTFARA 356
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R LP + + D GAY SM STYN + R E V
Sbjct: 357 RSLPPLHHNDVVAIMDTGAYGASMGSTYNTRPRAAEILV 395
>gi|398965346|ref|ZP_10680939.1| diaminopimelate decarboxylase [Pseudomonas sp. GM30]
gi|398147258|gb|EJM35972.1| diaminopimelate decarboxylase [Pseudomonas sp. GM30]
Length = 415
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 222/389 (57%), Gaps = 10/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + + P Y+YS+ I AY AL G+ ++ YA+KAN+N +
Sbjct: 9 GELFAEGVALSAIADRF-GTPTYVYSRAHIEAQYLAYADALAGMPHLVCYAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VS EL L AG K +F+G GK +D+ A + GV NV+S
Sbjct: 68 LNVLARLGAGFDIVSRGELERVLAAGGSADKIVFSGVGKTRDDMRRALEVGVHCFNVEST 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVK 250
+LE + V + G + V LR+NPDVD HPY++TG K +KFGI + ++ A
Sbjct: 128 DELERLQVVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA-- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
AH L+++G CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 186 AHLPNLEVIGVDCHIGSQLTTLPPFLDALDRLLDLVDRLGDCGIHLRHIDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F ++
Sbjct: 246 DEEP--PLAGDYIKAVRERLNGRDLALVFEPGRFIVANAGVLLTQVEYLKHTEHKDFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY A+ + V P+D+ ++DVVGP+CE+ DFL K+REL + G
Sbjct: 304 DAAMNDLIRPALYQAWMDVTAVK--PRDSAARQYDVVGPICETGDFLAKDRELAL-EEGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 LLAVHSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|390939397|ref|YP_006403134.1| diaminopimelate decarboxylase [Sulfurospirillum barnesii SES-3]
gi|390192504|gb|AFL67559.1| diaminopimelate decarboxylase [Sulfurospirillum barnesii SES-3]
Length = 401
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 212/369 (57%), Gaps = 14/369 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y+ IT+ A K+ + S+I +A+KAN+N +L H+ LG G VS E++
Sbjct: 14 PLYVYNFDTITQKFSALKEVFKARKSLICFAVKANSNLSVLHHMAHLGAGCDCVSIGEVK 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVL 211
AL AG K IF+G GK +++ A + + + N++SE +++ + + + G +
Sbjct: 74 RALFAGIPKYKIIFSGVGKRDDEIEEALRNDILMLNLESEEEMKRVEIIAEKLGVVARIS 133
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL--VGAHCHLGSTI 269
+R+NP++DP+ HPY++TG +KFG+ E + K N L L VG H H+GS I
Sbjct: 134 IRVNPNIDPKTHPYISTGLHENKFGVDIESAKRMYIHAK---NSLSLDPVGIHFHIGSQI 190
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY--HTGAVLPKPRNLIDTVR 327
T+V+ F++AA ++ N + ++A ++ + ++GGG+GI Y T A+ +++ +
Sbjct: 191 TEVNPFKEAAEVLANLLRNLKALKIDIKFFDVGGGIGIQYKEEETIALYEYAQSIFSALG 250
Query: 328 ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQ 387
L ++ L+ EPGR L+ + + V K NG K F+++DG+M +LIRPSLY AY
Sbjct: 251 GL----DVTLVCEPGRYLVGDCGYFLTKVLYEKHNGFKRFVIVDGAMNDLIRPSLYQAYH 306
Query: 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAST 447
IE + + AE S DVVGPVCES DF K ELP + LVV AGAY +M+S
Sbjct: 307 AIE--AEGKEGAEKSVCDVVGPVCESGDFFAKNIELPALEHDDLLVVKSAGAYGFTMSSN 364
Query: 448 YNLKMRPPE 456
YN + R E
Sbjct: 365 YNTRSRVAE 373
>gi|254515502|ref|ZP_05127562.1| diaminopimelate decarboxylase [gamma proteobacterium NOR5-3]
gi|219675224|gb|EED31590.1| diaminopimelate decarboxylase [gamma proteobacterium NOR5-3]
Length = 414
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 218/387 (56%), Gaps = 10/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + + + P Y+YS+ + +E Y +AL+G ++ YA+KAN+N +L+
Sbjct: 10 LFAEDVDCEALAQQY-GTPCYVYSRKAMESALEEYHKALKGCEHLVCYAVKANSNIAVLD 68
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L + G G +VS EL + AG DP K +F+G K +++ A Q G+ NV+SE +
Sbjct: 69 ILARCGAGFDIVSVGELERVIAAGGDPGKVVFSGVVKRPDEMRRALQVGIRCFNVESEAE 128
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + + V +R+NPDVD HPY++TG + +KFG+ + L K
Sbjct: 129 LEVLQAVAAQLQVQAPVSVRVNPDVDAGTHPYISTGLRENKFGVATDAAMALLRRAKTLS 188
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N + + G CH+GS + + DA ++ +D + A+G + +L++GGG+G+ Y
Sbjct: 189 N-IDVTGLDCHIGSQLIDMSPLLDALQQLLLMVDTLEAEGIHIRHLDLGGGIGVRYRDEQ 247
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + I VRE + R+L L+ EPGRS++AN L+ V +K +F ++D +
Sbjct: 248 P--PAVADYIAAVREALGDRDLALVFEPGRSIVANAGVLLTRVHYLKETDAHSFALVDAA 305
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDRGAGL 432
M + IRP+LY A+ +++ P DAE ++VVGPVCE+ DFLGK+REL PD L
Sbjct: 306 MNDFIRPALYQAW--VDIQPTGPSDAEPRLWNVVGPVCETGDFLGKDRELAIAPD--TLL 361
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+H AGAY M+S YN + R E +
Sbjct: 362 AIHGAGAYGFVMSSNYNTRPRAAEVMI 388
>gi|387131163|ref|YP_006294053.1| diaminopimelate decarboxylase [Methylophaga sp. JAM7]
gi|386272452|gb|AFJ03366.1| Diaminopimelate decarboxylase [Methylophaga sp. JAM7]
Length = 415
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 213/389 (54%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V V + P Y+YS+ + ++ A+ A ++ YA+KAN+N
Sbjct: 8 DGELFAENVAVA-AIAAAHGTPAYVYSRAALEQHWRAFDTAFAAQPHLVCYAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + + +F+G GK E++ A + NV+S
Sbjct: 67 VLNVLARLGSGFDIVSAGELARVLAAGGEAERTVFSGVGKTAEEIAYALTANIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE I + K V +R+NPDVD HPY++TG K +KFGI
Sbjct: 127 IAELERINHVAGEMNKVAPVSIRVNPDVDAGTHPYISTGLKENKFGIDINLAPAVYQQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L +VG CH+GS +T V F DA ++ ID + QG + +L+IGGGLGI Y
Sbjct: 187 AMPN-LDVVGVDCHIGSQLTSVTPFVDALQRVLGLIDTLEQQGISIHHLDIGGGLGIHY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P ++ L+ R+L +++EPGR++ N LV V +K + F ++
Sbjct: 245 -KDETPPTPAAYAAAMQSLLQGRSLEILLEPGRAIAGNAGLLVTQVEYIKATDERRFAIV 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPSLY ++ I+ V P+ +E +D+VGPVCE+ DFLGK+R L +G
Sbjct: 304 DAAMNDLLRPSLYQSWMAIDPVQ--PRQSEALNYDIVGPVCETGDFLGKDRSLAIA-QGD 360
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY +M+S YN + R PE V
Sbjct: 361 LLAIRSAGAYGFTMSSNYNSRPRAPEIMV 389
>gi|319409426|emb|CBI83072.1| Diaminopimelate decarboxylase [Bartonella schoenbuchensis R1]
Length = 424
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 214/399 (53%), Gaps = 7/399 (1%)
Query: 74 FLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKIL 133
LY E + + + + V PFY YS + + + Y+ A + S+I YA+KAN+N IL
Sbjct: 10 MLYAEGLSLSTLADKV-GTPFYCYSANALVTHFQDYQNAFHDIASLIAYAVKANSNQAIL 68
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDSEF 192
L G GA +VS ELR AL G + ++ G GK + ++ A A + NV+SE
Sbjct: 69 RLLAHNGAGADVVSEGELRRALAVGIPAHRIVYAGVGKTVREIDFALAHDICCFNVESEQ 128
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK-- 250
+LE + + K + LR+ PDVD + H + TG +KFGI L DA K
Sbjct: 129 ELEQLSARAVALSKNARISLRLTPDVDAKTHQKITTGKSENKFGI---PLALAYDAYKKA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A L++ G H+GS I + F +A ++ +++ +R G+ + +++IGGGLG+ Y
Sbjct: 186 AQLPGLQVCGVAMHIGSQICDLKPFEEAFIIAADFVRHLRNDGYAITHVDIGGGLGVSYG 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
++P P + V++ + + +I+EPGRS++ N L+ V K +NF+++
Sbjct: 246 RESCLVPSPFDYAALVKKHIAPLGITVILEPGRSIVGNAGVLITSVVYFKRGKGRNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M + +RP+LYDA+ + V P + + D+VGPVCE+ D+L +R LP + G
Sbjct: 306 DAAMNDFMRPTLYDAWHDVIPVKKTPLNGMMINADIVGPVCETGDYLALDRCLPVLEAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY MA+TYN ++ PE V+ ++ P
Sbjct: 366 LLAITGAGAYGAVMANTYNSRLLAPEVLVQDTRYAVVRP 404
>gi|94312207|ref|YP_585417.1| diaminopimelate decarboxylase [Cupriavidus metallidurans CH34]
gi|93356059|gb|ABF10148.1| diaminopimelate decarboxylase (DAP decarboxylase) [Cupriavidus
metallidurans CH34]
Length = 419
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 150/398 (37%), Positives = 230/398 (57%), Gaps = 13/398 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + DG L E V + + + P ++YS+ +T AY A +G N+ + YA+KA
Sbjct: 4 FFSRRDGILAVEQVPLTRIADQFGS-PTFVYSRAALTAAYNAYAAACKGRNAHVQYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L+ +LG G +VSG EL + AG DP K +F+G K + D+ LA V
Sbjct: 63 NSNLAVLQVFAQLGAGFDIVSGGELLRVIAAGGDPRKVVFSGVAKNVADMELALSHDVRG 122
Query: 186 VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +L+ + VA R+ GK+ V LRINPDVD + HPY++TG K +KFG+ E +
Sbjct: 123 FNVESIPELDRLNAVAGRL-GKRARVSLRINPDVDAKTHPYISTGLKANKFGVAFEDVLP 181
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A PN +++ G CH+GS IT+V + +A +++ ++ + A+G +++++++GGG
Sbjct: 182 TYRAAAALPN-IEVTGIDCHIGSQITEVAPYLEALDKVLDVVEALEAEGIKLEHIDVGGG 240
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
LGI Y P T+ + V +R + ++ EPGRSL+ N L+ V +K
Sbjct: 241 LGITY--NDETPPDITKFATTLIDRVAARGHGHREVLFEPGRSLVGNAGVLLTRVEFLKP 298
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF ++D +M +L RP++Y+A+ IE V+P DA + +DVVGPVCES D+LG++R
Sbjct: 299 GAAKNFCIVDAAMNDLARPAMYEAFHRIEPVAPR-NDAGV-MYDVVGPVCESGDWLGRDR 356
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L G L V AGAY M+S YN + R E V
Sbjct: 357 TLAV-QAGDLLAVMSAGAYGFVMSSNYNTRGRAAEVMV 393
>gi|262373159|ref|ZP_06066438.1| diaminopimelate decarboxylase [Acinetobacter junii SH205]
gi|262313184|gb|EEY94269.1| diaminopimelate decarboxylase [Acinetobacter junii SH205]
Length = 416
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 213/368 (57%), Gaps = 6/368 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YSK + ++ +A + ++ I +A+K+N+N +L L KLG G +V+G EL
Sbjct: 27 PLYVYSKATLEKHYLDMDRAFDFIDHQICFAVKSNSNLAVLNVLAKLGAGFDIVTGGELA 86
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG +P K +F+G GK D+ A G+ NV+S +L+ I + GKK +
Sbjct: 87 RVLAAGGNPAKIVFSGLGKSEADIEKALDVGIACFNVESYAELDRIQKVAAKLGKKAPIS 146
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K +KFGI ++ + + PN L++VG CH+GS +T+
Sbjct: 147 LRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQYAASLPN-LEIVGIDCHIGSQLTE 205
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
F DA +V I++++ G + +++IGGGLG+ Y P + +R ++
Sbjct: 206 TKPFVDALDRVVLMIEELKKLGINLKHIDIGGGLGVRY--KDETPPTVAEYANAMRPVLE 263
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
L + +EPGRS+ AN L+ V +K +NF +ID +M +LIRP+LY+A+ I+
Sbjct: 264 KLGLKVYMEPGRSISANAGALLTKVDLLKPTNHRNFAIIDAAMNDLIRPALYEAWMDIQS 323
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
V+P D E+ +D+VG +CE+ DFLGK+R+L + L V AGAY M+S YN +
Sbjct: 324 VAPH-SDVEVKTWDLVGAICETGDFLGKQRDLALQENDV-LAVLGAGAYGFVMSSNYNTR 381
Query: 452 MRPPEYWV 459
R E V
Sbjct: 382 GRAAEVMV 389
>gi|395788466|ref|ZP_10468030.1| diaminopimelate decarboxylase [Bartonella birtlesii LL-WM9]
gi|395408383|gb|EJF74994.1| diaminopimelate decarboxylase [Bartonella birtlesii LL-WM9]
Length = 421
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 224/411 (54%), Gaps = 14/411 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ G L+ E + + + + V PFY YS + + Y++A + + S+I YA+
Sbjct: 2 HFFTYH-QGMLHAEGLSLSVLAQDV-GTPFYCYSASALVGRFQEYQKAFQEIPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L G GA +VS ELR AL G + +++G GK + ++ A + +
Sbjct: 60 KANSNQAVLRLLSLNGSGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +LE + + K V LRINPDVD + H + TG +KFGI
Sbjct: 120 YCFNVESEQELEQLSARAVALSKTARVSLRINPDVDAKTHEKITTGKSENKFGIP----- 174
Query: 244 WFLDAVKAHPNELKLVGAHC-----HLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
L A +A+ L G H H+GS I + F +A ++ +++ ++ + G+ + +
Sbjct: 175 -LLLAREAYKKADSLPGLHVCGVDMHIGSQICDLKPFEEAFFIIADFVRQLWSDGYAITH 233
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
+++GGGLGI Y + +P + V++ + +N+I+EPGRS++ LV V
Sbjct: 234 IDVGGGLGIAYGNEQYNIPSLFDYAALVKKHIAPLGINIIVEPGRSIVGEAGVLVTSVLY 293
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
+K +NF+++D +M +LIRP+LY+A+Q + LV DA + + D+VG VCE+ D+L
Sbjct: 294 LKRGEGRNFVIVDAAMNDLIRPTLYEAWQSVVLVKQTSSDASLIQADIVGSVCETGDYLA 353
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+R +P G L + AGAY MASTYN ++ PE V+ +I P
Sbjct: 354 LDRCVPILAPGDLLAITGAGAYGAVMASTYNSRLLVPEVLVQDTRYAVIRP 404
>gi|209883910|ref|YP_002287767.1| diaminopimelate decarboxylase [Oligotropha carboxidovorans OM5]
gi|337742381|ref|YP_004634109.1| diaminopimelate decarboxylase LysA [Oligotropha carboxidovorans
OM5]
gi|386031346|ref|YP_005952121.1| diaminopimelate decarboxylase LysA [Oligotropha carboxidovorans
OM4]
gi|209872106|gb|ACI91902.1| diaminopimelate decarboxylase [Oligotropha carboxidovorans OM5]
gi|336096412|gb|AEI04238.1| diaminopimelate decarboxylase LysA [Oligotropha carboxidovorans
OM4]
gi|336100045|gb|AEI07868.1| diaminopimelate decarboxylase LysA [Oligotropha carboxidovorans
OM5]
Length = 422
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 222/410 (54%), Gaps = 11/410 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + +G L+ EDV + + E + PFY YS + R+ + +A G+++++ YA+
Sbjct: 2 HHFQYR-NGVLHAEDVDIGRLAEQLGT-PFYCYSTATLERHYRVFTEAFAGVDTLVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG GA +VSG EL A AG K +F+G GK +L A E +
Sbjct: 60 KANSNQSVLRTLARLGAGADVVSGGELMRARAAGIPADKIVFSGVGKTEGELRQALAENI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+NV+SE +L+ + + G+ V LR+NPD+ H ++TG +KFGI + +
Sbjct: 120 LCINVESEPELDLLSRVADETGQVARVSLRLNPDIGAGGHAKISTGKSENKFGIPLSRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P ++L G H+GS IT + A L+V+++ +RA G +D+++ GG
Sbjct: 180 GVYARAAKLPG-IRLTGVDMHIGSQITDLAPLEAAFALLVDFVRTLRADGHAIDHIDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVK 360
GLGI Y V P P + V+ + +R L+ L+ EPGR ++ N LV+ V VK
Sbjct: 239 GLGIPYESDLPVPPTPAAYAEVVKRV--TRGLDDCRLLFEPGRMIVGNAGILVSRVIYVK 296
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGK 419
+NF++ID +M +LIRP+LY+A+ I V AP D + DVVGPVCE+ D+L
Sbjct: 297 HGEGRNFVIIDAAMNDLIRPTLYEAHHDILPVREAAPNDPSLVA-DVVGPVCETGDYLAL 355
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R LP G + V +GAY A TYN + PE V+ ++ P
Sbjct: 356 GRRLPALAAGDLVAVMSSGAYGAVQAGTYNTRPLVPEVLVKGGDYAVVRP 405
>gi|417843802|ref|ZP_12489867.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21127]
gi|341948265|gb|EGT74895.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21127]
Length = 415
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/396 (35%), Positives = 227/396 (57%), Gaps = 10/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGNRPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKNNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF + D M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIVEIDLTLAREKAI--YDVVGPVCETSDFLGKQREL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G + AGAY SM+S YN + R E V
Sbjct: 357 SIAE-GDYIAQCSAGAYGASMSSNYNSRPRTAEVLV 391
>gi|402757925|ref|ZP_10860181.1| diaminopimelate decarboxylase [Acinetobacter sp. NCTC 7422]
Length = 416
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 219/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E + D + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSL-DQLAQQYGTPLYVYSKATFEKHYLDMHRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L K G G +V+G EL L AG +P K +F+G GK D+ A G+ NV
Sbjct: 64 LAVLNVLAKAGAGFDIVTGGELARVLAAGGEPAKIVFSGLGKSEADIEKALNVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDSVNETYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ PN L++VG CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 184 AASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVILMIEQLKGLGINLKHIDIGGGLGVR 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P + +R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPSVEAYANAMRPALEKLGLKVYMEPGRSISANAGALLTKVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V+ P D E+ +D+VG +CE+ DFLGKER+L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQSVNANP-DVEVKTWDLVGAICETGDFLGKERDLALQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|268678856|ref|YP_003303287.1| diaminopimelate decarboxylase [Sulfurospirillum deleyianum DSM
6946]
gi|268616887|gb|ACZ11252.1| diaminopimelate decarboxylase [Sulfurospirillum deleyianum DSM
6946]
Length = 401
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 134/367 (36%), Positives = 210/367 (57%), Gaps = 10/367 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P YLY IT A K + S+I +A+K+N+N +L+H+ LG G VS E++
Sbjct: 14 PLYLYDFDSITHKFSALKDVFKARKSLICFAVKSNSNLSVLKHMAHLGAGCDCVSIGEVK 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNVL 211
AL AG K IF+G GK +++ A + + + N++SE +++ + + ++ G +
Sbjct: 74 RALLAGIPKYKIIFSGVGKRDDEIEEALRNDILMLNLESEEEMKRVEIIAQKLGVVARIS 133
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP++DP+ HPY++TG +KFG+ E + K + L VG H H+GS IT
Sbjct: 134 IRVNPNIDPKTHPYISTGLHENKFGVDIESAKRMYIHAK-NSASLDPVGIHFHIGSQITD 192
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY--HTGAVLPKPRNLIDTVREL 329
V+ F++AA ++ N + ++A ++ + ++GGG+GI Y T A+ +++ + L
Sbjct: 193 VNPFKEAADVLANLVRNLKALKIDIKFFDVGGGIGIQYKEEETIALYDYAQSIFAALGGL 252
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
++ L+ EPGR L+ + + V K NG K F+++DG+M +LIRPSLY AY I
Sbjct: 253 ----DVTLVCEPGRYLVGDCGYFLTKVLYEKYNGFKRFVIVDGAMNDLIRPSLYQAYHAI 308
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E+ + E S DVVGPVCES DFL K ELP + LVV AGAY +M+S YN
Sbjct: 309 EV--EGKEGTEKSLCDVVGPVCESGDFLAKNIELPALEHDDILVVKSAGAYGFTMSSNYN 366
Query: 450 LKMRPPE 456
+MR E
Sbjct: 367 TRMRVAE 373
>gi|86747955|ref|YP_484451.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris HaA2]
gi|86570983|gb|ABD05540.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris HaA2]
Length = 421
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/400 (35%), Positives = 215/400 (53%), Gaps = 5/400 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++ + V PFY YS + R+ + +A G ++++ YA+KAN+N
Sbjct: 8 DGVLHAEGVGLEVLAREV-GTPFYCYSTATLERHYRVFSEAFAGTDALVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQEGVFVNVDS 190
+L L +LG GA +VSG EL+ AL AG +K +F+G GK +L A A + +NV+S
Sbjct: 67 VLRTLARLGAGADVVSGGELQRALAAGIPASKIVFSGVGKTEAELRAALAHDIKCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G+ + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLAVETGRTARISIRVNPDVDSGTHAKISTGKSENKFGIPLVHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P L + G H+GS I + A L+ ++ ++R G + +++ GGGLGI YY
Sbjct: 187 KLPGIL-ISGVDVHIGSQIIDLAPMEAAFRLVAEFVHQLRGDGHTISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P V+ + + L+ EPGR ++ N LV V VK K F++I
Sbjct: 246 EDRDAPPEPFAYAQMVKRVTHNLGCALLFEPGRMIVGNAGILVARVIYVKHGDGKTFVII 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP+LY+AY I + +PAP A++ DVVGPVCE+ D+L +R+LP G
Sbjct: 306 DAAMNDLIRPTLYEAYHEILPVAAPAP-GAKLITADVVGPVCETGDYLALDRQLPELKSG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 365 DLIAIMTAGAYGAVQACTYNTRALVPEVLVKDDQYAVVRP 404
>gi|114330425|ref|YP_746647.1| diaminopimelate decarboxylase [Nitrosomonas eutropha C91]
gi|114307439|gb|ABI58682.1| diaminopimelate decarboxylase [Nitrosomonas eutropha C91]
Length = 417
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 213/371 (57%), Gaps = 13/371 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS I +++ +A N +I YA+KAN+N +L L +LG G +VSG EL+
Sbjct: 31 PCYVYSSAAIRTAYQSFDRAFGQRNHLICYAVKANSNLAVLNLLARLGSGFDIVSGGELQ 90
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L+AG D K +F+G GK E++ +A +F NV+SE +L + + GK V
Sbjct: 91 RVLKAGGDLQKTVFSGVGKTFEEIRIALAANIFCFNVESEMELIALNEIAGQMGKIAPVS 150
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD HPY++TG K +KFGI + + + P +++ G CH+GS +T+
Sbjct: 151 LRVNPDVDANTHPYISTGMKENKFGIPAAEAERIYAIAQQLPY-IRVSGLDCHIGSQLTE 209
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+ F +AA M++ + +++A G +++L++GGGLG+ Y L P + + V+ L
Sbjct: 210 IAPFIEAAHKMLDLLARLQATGISIEHLDLGGGLGVRY-----DLEIPPTIEEYVKALCA 264
Query: 332 SRN---LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ L+IEPGRS++ N L+ V +K +NF ++D +M +++RP+LY AY
Sbjct: 265 ATENYPQQLLIEPGRSMVGNAGLLLTRVHYLKHAPHRNFAIVDAAMNDMLRPALYQAYHS 324
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I + A + E + +VGPVCE+ DFLG +R L T + L V AGAY MSM+S Y
Sbjct: 325 I--LPIAKRTGETKIYQIVGPVCETGDFLGHDRNL-TLESNDLLAVMSAGAYGMSMSSNY 381
Query: 449 NLKMRPPEYWV 459
N + R E V
Sbjct: 382 NTRPRAVEVMV 392
>gi|388543886|ref|ZP_10147175.1| diaminopimelate decarboxylase [Pseudomonas sp. M47T1]
gi|388277714|gb|EIK97287.1| diaminopimelate decarboxylase [Pseudomonas sp. M47T1]
Length = 415
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 8/386 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V + + E P Y+YS+ I + AY AL G++ ++ +A+KAN+N +L
Sbjct: 11 LFAEGVSLASIAERF-GTPTYVYSRAHIEQQYRAYADALSGISHLVCFAVKANSNLGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
L +LG G +VSG EL L AG + +F+G GK ED+ A + GV NV+S +
Sbjct: 70 VLARLGAGFDIVSGGELERVLAAGGRADRVVFSGVGKTREDMRRALEVGVHCFNVESAEE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE + + G + V LR+NPDVD HPY++TG +KFGI + P
Sbjct: 130 LERLQAVAAEMGVRAPVSLRVNPDVDAGTHPYISTGLAENKFGIDIVAAEDVYLRAAQLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N L+++G CH+GS +T + F DA +++ +D++ G + ++++GGGLG+ Y
Sbjct: 190 N-LEVIGVDCHIGSQLTSLAPFLDALDRLLDLVDRLSDCGIFLQHIDLGGGLGVQYRDEE 248
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + I VRE + R L L+ EPGR ++AN L+ V +K K+F ++D +
Sbjct: 249 P--PLASDYIKAVRERLQGRELALVFEPGRYIVANAGALLTRVEYLKHTAHKDFAIVDAA 306
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +LIRP+LY A+ + V P+ E +D+VGP+CE+ DFL K R+L + G L
Sbjct: 307 MNDLIRPALYQAWMDVSAVQ--PRQGEGRSYDIVGPICETGDFLAKARQLAL-EEGDLLA 363
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY M+S YN + R E V
Sbjct: 364 VRSAGAYGFVMSSNYNTRGRAAEVLV 389
>gi|375104499|ref|ZP_09750760.1| diaminopimelate decarboxylase [Burkholderiales bacterium JOSHI_001]
gi|374665230|gb|EHR70015.1| diaminopimelate decarboxylase [Burkholderiales bacterium JOSHI_001]
Length = 428
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 133/375 (35%), Positives = 217/375 (57%), Gaps = 14/375 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + + +Y+QAL G + ++ YA+KAN++ +L+ + GCG +VSG EL+
Sbjct: 34 PLYVYSRAAMLAALRSYQQALAGRSHLVCYAMKANSSLAVLQTFAEAGCGFDIVSGGELQ 93
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
LRAG DP K +F+G GK ++ A Q GV NV+SE +L + + G+ +
Sbjct: 94 RVLRAGGDPAKVVFSGVGKTRSEMRQALQVGVHCFNVESEPELLALSEEAVALGRTAAIS 153
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD HPY++TG K +KFG+ +++ P +++ G H+GS IT+
Sbjct: 154 LRVNPDVDAGTHPYISTGLKGNKFGVAHDRALAVYRQAATLPG-IRVAGIDFHIGSQITE 212
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+ + DA +++ ++ + +G + ++++GGGLGI Y T P +L+ V + +
Sbjct: 213 IAPYLDAVDRLLDLVEALEREGILLAHIDVGGGLGITY--TDETPPAAADLVRAVLDRLD 270
Query: 332 SR---NLNLIIEPGRSLIANTCCLVNHVTGVK----TNGTKNFIVIDGSMAELIRPSLYD 384
+R L++EPGRSL+ N L+ +K + KNF ++D +M ++ RP++Y
Sbjct: 271 ARGHGQRTLLLEPGRSLVGNAGVLLTTTLYLKPGDGSAEAKNFCIVDAAMNDMARPAMYQ 330
Query: 385 AYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSM 444
A+ + L+ P+DA +DVVGPVCES D+L ++R L G L + AGAY M+M
Sbjct: 331 AW--MGLLPCVPRDAAPQTWDVVGPVCESGDWLARQRALAV-QPGDVLAMLSAGAYGMAM 387
Query: 445 ASTYNLKMRPPEYWV 459
AS YN ++R E V
Sbjct: 388 ASNYNTRVRAAEVMV 402
>gi|424863862|ref|ZP_18287774.1| diaminopimelate decarboxylase [SAR86 cluster bacterium SAR86A]
gi|400757183|gb|EJP71395.1| diaminopimelate decarboxylase [SAR86 cluster bacterium SAR86A]
Length = 411
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/395 (33%), Positives = 223/395 (56%), Gaps = 15/395 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
FS K + LYCE V++ D+ + P Y+YSK ++ N +AY A + + +I +++K+
Sbjct: 4 FSYK-NNILYCEKVKISDIADKY-GTPAYIYSKKTLSENFDAYANAFDKKSGLICFSVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
+N IL+ L + G G +VSG EL L AG DP K IF G K E+++ ++ +
Sbjct: 62 LSNLSILKFLSEKGSGFDIVSGGELERTLLAGADPKKIIFTGIAKTDEEILFGIEKNILS 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244
N++S+ ++ I +R K V+V +R NP++D H Y+ TG K KFGI +E L+
Sbjct: 122 FNIESKSEMMRIEKIARDKKKLVDVAIRFNPEIDAGGHEYIKTGRKKDKFGILVSETLK- 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
L ++ L L+G CH+GS I ++D F+ AA +++ E+ +L++GGG
Sbjct: 181 -LAKYISNSEHLNLIGLSCHIGSQIFELDDFKAAANFTKKLAEEVNKMNIELKFLDVGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LGI Y T + P P++L+ + + R+ +I+EPGRS+ N +++ + +K
Sbjct: 240 LGISY--TDSNFPSPKDLLKIIENELQDRDEKIILEPGRSISGNAGIMISKIEYIK---- 293
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
+N+++ID M +LIRP+LY+A + ++ + +VGP+CES+D L K+ E+
Sbjct: 294 ENYLIIDAGMNDLIRPALYNAKHSV--INTTKGAGNNGSWTIVGPICESSDVLAKDYEME 351
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G + V AGAY M+S YN + +PPE V
Sbjct: 352 AAE-GDIIAVETAGAYGHVMSSNYNSRRKPPEILV 385
>gi|374636550|ref|ZP_09708115.1| diaminopimelate decarboxylase [Methanotorris formicicus Mc-S-70]
gi|373558662|gb|EHP84993.1| diaminopimelate decarboxylase [Methanotorris formicicus Mc-S-70]
Length = 436
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 224/391 (57%), Gaps = 26/391 (6%)
Query: 83 QDVMETVEK--RPFYLYSKPQITRN----VEAYKQALE--GLNSIIGYAIKANNNYKILE 134
D E E+ P Y+ S+ QI N V+A+K+ E G I+ YA KAN N + +
Sbjct: 20 HDATELAERFGTPLYVMSETQIKNNYKKYVDAFKRYEEETGKEFIVAYAYKANANLAVTK 79
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L KLGCGA +VSG EL +A +G K +FNGN K E++++ + + NVDS
Sbjct: 80 LLSKLGCGADVVSGGELYIAKLSGVPSNKIVFNGNCKTKEEIIMGIETNIRAFNVDS--- 136
Query: 194 LENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
L +++ + IA G+ NV RINP+VDP+ HP ++TG K +KFG+ E + A+K
Sbjct: 137 LSELILVNEIAKEMGEVANVAFRINPNVDPKTHPKISTGLKKNKFGLDVES-GIAMKAIK 195
Query: 251 A--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ +VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLG+
Sbjct: 196 MALEMENVNIVGVHCHIGSQLTDISPFVEETKKIMDFVVELKKEGIEIEDVNLGGGLGVP 255
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNG 363
YY + P +L D + +L NLI+EPGRSL+A + L+ + +K
Sbjct: 256 YYKDKEI-PTQYDLADAIINTILEYKDKVEMPNLILEPGRSLVATSGVLLGKLHHIKETP 314
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+I+ID M +++RP++Y+AY E+ +D E K ++ G +CES+D +GK+REL
Sbjct: 315 VAKWIMIDAGMNDMMRPAIYEAYH--EITPCVIRDGEKEKVNIAGGLCESSDVMGKDREL 372
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRP 454
+ G + + D GAY +SMA+ YN + RP
Sbjct: 373 TPIEVGDVVAILDVGAYGISMANNYNARGRP 403
>gi|395783744|ref|ZP_10463593.1| diaminopimelate decarboxylase [Bartonella melophagi K-2C]
gi|395425866|gb|EJF92026.1| diaminopimelate decarboxylase [Bartonella melophagi K-2C]
Length = 424
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 136/400 (34%), Positives = 216/400 (54%), Gaps = 9/400 (2%)
Query: 74 FLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKIL 133
LY E + + + + V PFY YS + + + Y+ A + S+I YA+KAN+N IL
Sbjct: 10 MLYAEGLSLSALADKV-GTPFYCYSASALVTHFQDYQNAFHDIPSLIAYAVKANSNQAIL 68
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCI-FNGNGKLLEDLVLA-AQEGVFVNVDSE 191
L + G GA +VS ELR AL G P CI + G GK + ++ A A + NV+SE
Sbjct: 69 RLLARNGAGADVVSEGELRRALAVGI-PAHCIVYAGVGKTVREIDFALAHDICCFNVESE 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK- 250
+LE + + K + LR+ PDVD + H + TG +KFGI L DA K
Sbjct: 128 QELEQLSARAVALSKNARISLRLTPDVDAKTHQKITTGKSENKFGI---PLVLAYDAYKK 184
Query: 251 -AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A L++ G H+GS I + F +A ++ +++ +R G+ + +++IGGGLG+ Y
Sbjct: 185 AAQLPGLQVCGVAMHIGSQICDLKPFEEAFIIAADFVRHLRNDGYAITHVDIGGGLGVSY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
++P P + V++ + + +I+EPGRS++ N LV V K +NF++
Sbjct: 245 GRESCLVPSPFDYAALVKKHIAPLGITVILEPGRSIVGNAGVLVTSVVYFKRGKGRNFVI 304
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M + +RP+LYDA+ + V P + + D+VGPVCE+ D+L +R LP + G
Sbjct: 305 VDAAMNDFMRPTLYDAWHGVMPVKKKPLNGVMINADIVGPVCEAGDYLALDRCLPVLEAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
L + AGAY MA+TYN ++ PE V+ ++ P
Sbjct: 365 DLLAITGAGAYGAVMANTYNSRLLAPEVLVQDTRYAVVHP 404
>gi|315125206|ref|YP_004067209.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. SM9913]
gi|315013719|gb|ADT67057.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. SM9913]
Length = 417
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVATIAQHY-GTPCYVYSRATFERHYLAFANAAQDHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGAGFDIVSKGELARVIKAGGAANKVVFSGVAKTADEIAYALELGIKCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI E + P
Sbjct: 130 LERISEVACELNLDAPISIRVNPDIDAKTHPYISTGLKENKFGIGIETALSVYQHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L +VG CH+GS +T+ F +A ++ ID+++ G E+ +L+IGGGLG+ Y
Sbjct: 190 G-LNIVGVDCHIGSQLTQTKPFLEALDKLLALIDELKNAGIELSHLDIGGGLGVTY--ND 246
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V + L R+L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 247 EQPPHPSEYAAQVTQRLTNYRHLELIFEPGRAIAANAGILVTQVEFIKQNQDKYFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS + +DVVGPVCE+ DFLGK+R L +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDETPTHNYDVVGPVCETGDFLGKDRPLALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN + R E V
Sbjct: 366 VQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|389873931|ref|YP_006381350.1| diaminopimelate decarboxylase [Advenella kashmirensis WT001]
gi|388539180|gb|AFK64368.1| diaminopimelate decarboxylase [Advenella kashmirensis WT001]
Length = 415
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 218/387 (56%), Gaps = 14/387 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + E+Y Q L N+++ + +KAN+N +L+ + G G +VSG EL
Sbjct: 17 PLYVYSRAALKAAWESYAQPLTNRNALVCFGMKANSNLAVLQQFAQWGSGFDIVSGGELA 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL+AG P +F+G GK ++ Q GV NV+S +LE I + + G+ V
Sbjct: 77 RALKAGARPDTIVFSGVGKQDWEIKAGLQAGVKCFNVESTDELERISLIASQLGRTAPVS 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K++KFGI E P +++VG CH+GS IT+
Sbjct: 137 LRVNPDVDAKTHPYISTGLKDNKFGIAIEIAAQVYQRAAVLPG-IRIVGVDCHIGSQITQ 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
++ + DA ++N ID + + +L+IGGGLGI Y + P L+D V +
Sbjct: 196 IEPYLDALERLLNLIDTLAGLDIRLAHLDIGGGLGIRYQDETPIAPAL--LLDKVFARLE 253
Query: 332 SR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
R +L LI+EPGRSL+ N LV V +K + +KNF ++D +M +L+RP+LYDA+
Sbjct: 254 ERGYGHLQLIMEPGRSLVGNAGILVTRVQYLKHHESKNFAIVDAAMNDLLRPTLYDAWHG 313
Query: 389 I-ELVSPA-----PQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCM 442
+ +VSP+ A+ +D+VGP+CES D+L ++R+L L + AGAY
Sbjct: 314 VLPVVSPSNTRDVNDAAQARVYDIVGPICESGDWLARDRQLQLQQN-DLLAIESAGAYGF 372
Query: 443 SMASTYNLKMRPPEYWVRSLISIIILP 469
M+ YN + R E V + + +I P
Sbjct: 373 VMSGHYNTRPRCAEVMVDADQTYLIRP 399
>gi|197104100|ref|YP_002129477.1| diaminopimelate decarboxylase [Phenylobacterium zucineum HLK1]
gi|196477520|gb|ACG77048.1| diaminopimelate decarboxylase [Phenylobacterium zucineum HLK1]
Length = 422
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/402 (34%), Positives = 225/402 (55%), Gaps = 10/402 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL--EGL-NSIIGYAIKANNN 129
G L+CEDV + + + V P Y+YS + R+ + AL G+ + +I +A+KAN+N
Sbjct: 9 GELFCEDVPLARIAQAVGT-PVYVYSSATLERHYTVLRDALVAHGVKDPLIAFAVKANSN 67
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L +LG GA +VS E+R AL AG P + +F+G GK ++ A Q GV +NV
Sbjct: 68 VAVLRTLARLGAGADVVSEGEVRRALAAGVPPERIVFSGVGKTEAEVAFALQAGVAEINV 127
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+SE +L+ + ++ G + + +R+NPDV H ++TG +KFG+ + + L A
Sbjct: 128 ESEPELDLVDRVAQRLGVRAQIAIRVNPDVQAGGHEKISTGKSENKFGVSFSEAER-LYA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
++ ++ VG CH+GS IT + +A M +++++ +G V+ L++GGGLG+
Sbjct: 187 KASNLAGVRPVGVACHIGSQITDLAPMAEAFAKMRGLVERLQREGLRVERLDLGGGLGVP 246
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT-KNF 367
Y++ P P + + E V ++ L EPGR + AN L+ VT V + F
Sbjct: 247 YFNQ-PEPPSPDDYAAMIAETVGGLDVGLAFEPGRMIAANAGVLIAGVTHVHERPEGRRF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+V+D +M +LIRP++YDAY I V P++ E +DVVGPVCE+ D ++R LP +
Sbjct: 306 LVLDAAMNDLIRPAMYDAYHDIRAVR--PREGEARPYDVVGPVCETGDTFTRDRALPPLE 363
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
G + AGAY +MAS YN ++ PE V+ ++ P
Sbjct: 364 PGDLVAFMTAGAYGAAMASEYNSRLLVPEVLVKGAEFAVVRP 405
>gi|171462912|ref|YP_001797025.1| diaminopimelate decarboxylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192450|gb|ACB43411.1| diaminopimelate decarboxylase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 432
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 226/397 (56%), Gaps = 17/397 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN----SIIGYAIKAN 127
+G Y E+V + D+ + P Y+YSK +T +AY +A N + + YA+KAN
Sbjct: 18 NGNWYAEEVPLTDLAKEF-GTPLYVYSKKALTEAYQAYDKACVDANGKRRARVHYAMKAN 76
Query: 128 NNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FV 186
+N +++ +KL G LVSG EL AL G DP +F G GK ++ A + GV +
Sbjct: 77 SNLAVIDCFKKLSSGFDLVSGGELARALAIGADPKSLVFAGVGKSAAEIAAALKAGVKCI 136
Query: 187 NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWF 245
N +S +L I + + + LR+NPDVD Q HPY++TG K +KFGI +E L+ +
Sbjct: 137 NAESIAELHKINQVATELKLRAPISLRVNPDVDAQTHPYISTGLKGNKFGIVYHEVLKTY 196
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+A + +++ +VG CH+GS IT + + DA +++ + +++ +G + +L++GGGL
Sbjct: 197 REA--SLLSQIDVVGIDCHIGSQITTIAPYLDALDKVLDLVAQLKKEGIAIHHLDLGGGL 254
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GI Y + P +T+ V R +L++++EPGRSL+ N L+ V +K
Sbjct: 255 GISY--SDETPPDITEFTNTLLNRVAERGFGHLDVVLEPGRSLVGNAGVLLTTVEYLKPG 312
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
KNF ++D SM EL+RP+LY+A+ I V P AE +D+VGPVCES D+LG+ R
Sbjct: 313 AEKNFCIVDASMTELMRPALYEAHHGIVPVKNKP--AEALTYDIVGPVCESGDWLGRNRH 370
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + G L + AGAY MAS YN + +P E V
Sbjct: 371 LAV-EEGDLLAILSAGAYGFVMASNYNTRPKPAEIMV 406
>gi|84500205|ref|ZP_00998471.1| diaminopimelate decarboxylase [Oceanicola batsensis HTCC2597]
gi|84392139|gb|EAQ04407.1| diaminopimelate decarboxylase [Oceanicola batsensis HTCC2597]
Length = 421
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 214/399 (53%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ V PFYLYS +TR+ + + AL GL ++ YA+KA +N
Sbjct: 8 DGALYAEDVPVAEIAAEV-GTPFYLYSTATLTRHFQLFDDALSGLPHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL L LG G +VSG E A AG + +F+G GK ++ A G+ N++S
Sbjct: 67 ILRTLADLGAGMDVVSGGEYARARAAGVPGERIVFSGVGKTRVEMREALAGGIRQFNIES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G V +R+NPDVD + H +ATG +KFGI + + +
Sbjct: 127 EPELEALNEVALSMGVVAPVTVRVNPDVDARTHAKIATGKSENKFGIPISRAREVYARIA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+ +G H+GS +T ++ +R A + + D +RA G ++ L++GGGLGI Y
Sbjct: 187 ALPG-LEAIGIDVHIGSQLTDLEPYRQAFEKVGDLTDALRADGHDIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + + E + + + IEPGR + N +V+ V VK+ ++F+++
Sbjct: 246 RGNEPPPLPMDYGKLIAETLGDKGCEIEIEPGRLVAGNAGIMVSRVIYVKSGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
DG+M +LIRP++Y+A+ I V A E +D+VGPVCES D ++R +P + G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIVPVVEAEAGIEYRPYDIVGPVCESGDTFARQRMMPPLEAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY M+S YN + PE V +I P
Sbjct: 366 LVAFRSAGAYGAVMSSEYNTRPLIPEVLVNGHQFAVIRP 404
>gi|423347227|ref|ZP_17324914.1| diaminopimelate decarboxylase [Parabacteroides merdae CL03T12C32]
gi|409218484|gb|EKN11455.1| diaminopimelate decarboxylase [Parabacteroides merdae CL03T12C32]
Length = 386
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/374 (37%), Positives = 204/374 (54%), Gaps = 9/374 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + + K + YA+KAN N +IL + + G GA VSG E++
Sbjct: 18 PFYFYDITLLKETLNTVKTEAGKYGYHVHYAVKANANPRILSIIAEYGLGADCVSGGEIQ 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K ++ G GK ++ L +F NV+S +LE + + K ++
Sbjct: 78 AALDAGFPARKIVYAGVGKADWEINLGLDNDIFCFNVESAAELEILEELAAAKNKVASIA 137
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD V +KL+G HCH+GS IT
Sbjct: 138 LRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLDLV-CRLEHIKLIGIHCHIGSQITD 196
Query: 272 VDIFRDAAVLMVNYI-DKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVREL 329
+ FR V+ VN I +++ A+G +V+ LN GGGLGIDYYH + +P N +L
Sbjct: 197 MAAFR-GLVIRVNEIQEELEARGIKVENLNFGGGLGIDYYHPNHLPIPAFDNYFAVFNKL 255
Query: 330 VLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ R + EPGRS+ A L++ V VK TK F ++D ELIRP++YDAY
Sbjct: 256 LQLRPGQQVHFEPGRSIAAQCGSLISKVLYVKVGETKKFCILDAGFTELIRPAMYDAYHR 315
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
+E ++ D E+ +DVVGP+CES+D GK+ EL RG + + AGAY MAS Y
Sbjct: 316 MENIT---SDEEVEVYDVVGPICESSDVFGKDVELNRAHRGDLIALRSAGAYGEVMASQY 372
Query: 449 NLKMRPPEYWVRSL 462
N + P ++ ++
Sbjct: 373 NCRKLPTAHYSDTM 386
>gi|395788989|ref|ZP_10468519.1| diaminopimelate decarboxylase [Bartonella taylorii 8TBB]
gi|395431123|gb|EJF97150.1| diaminopimelate decarboxylase [Bartonella taylorii 8TBB]
Length = 421
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 137/411 (33%), Positives = 224/411 (54%), Gaps = 14/411 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ G L+ E + + + + V PFY YS + + Y++ + + S+I YA+
Sbjct: 2 HFFTYH-QGMLHAEGLSLSALAQDV-GTPFYCYSASALVGRFQEYQKVFQEIPSLIAYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L G GA +VS ELR AL G + +++G GK + ++ A + +
Sbjct: 60 KANSNQAVLRLLSLNGSGADVVSEGELRRALAVGIPAHRIVYSGVGKTVREIDFALSQDI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
+ NV+SE +LE + + K V LRINPDVD + H + TG +KFGI
Sbjct: 120 YCFNVESEQELEQLSARAVALSKTARVSLRINPDVDAKTHEKITTGKSENKFGIP----- 174
Query: 244 WFLDAVKAHPNELKLVGAHC-----HLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDY 298
L A +A+ L G H H+GS I + F +A ++ +++ ++ + G+ + +
Sbjct: 175 -LLLAREAYKKADSLPGLHVCGVDMHIGSQICDLKPFEEAFFIIADFVRQLWSDGYAITH 233
Query: 299 LNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTG 358
++IGGGLGI Y + +P + V++ + +N+I+EPGRS++ LV V
Sbjct: 234 IDIGGGLGIAYGNEQYNIPSLFDYAVLVKKHIAPLGINIIVEPGRSIVGEAGVLVTSVLY 293
Query: 359 VKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
+K +NF+++D +M +LIRP+LY+A+Q++ LV DA + + D+VG VCE+ D+L
Sbjct: 294 LKRGEGRNFVIVDAAMNDLIRPTLYEAWQNVVLVKQTSSDASLIQADIVGSVCETGDYLA 353
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+R +P G L + AGAY MASTYN ++ PE V+ +I P
Sbjct: 354 LDRCVPILAPGDLLAITGAGAYGAVMASTYNSRLLVPEVLVQDTRYAVIRP 404
>gi|298675499|ref|YP_003727249.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
gi|298288487|gb|ADI74453.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
Length = 426
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 213/377 (56%), Gaps = 20/377 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+ ++ +I N YK+A ++ + YA KAN N IL+ L + G GA + S EL
Sbjct: 32 PIYVTNEQRIRDNFRRYKKAFP--DADLFYAAKANGNLTILKILAEEGAGADVFSDGELY 89
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLL 212
AL AG K +FNGN K +L++A Q GV V+VDS +L + ++ GK V++
Sbjct: 90 TALLAGIPRDKILFNGNSKSDRELLMAVQTGVRVSVDSFDELNTLSSIAKNEGKVVDIAF 149
Query: 213 RINPDVDPQVHPYVATGNKNSKFGIRNEKL----QWFLDAVKAHPNELKLVGAHCHLGST 268
R+NPDV P+ HP ++TG K SKFGI ++++ + LD +P VG HCH+GS
Sbjct: 150 RVNPDVSPKTHPKISTGLKTSKFGIPHDEVVSAYKQALDKPGVNP-----VGIHCHIGSQ 204
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
I +V+ F + M++ +++I G E ++++IG GLGI Y V P P +L D++
Sbjct: 205 ILEVEPFVETVNKMMDLVEQISRLGVEFEFVDIGSGLGIPYEKNIEV-PTPNDLADSIVP 263
Query: 329 LVLSR------NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL 382
+ R N L++EPGR L+ ++ L+ V +K N K F+ ID +IRP +
Sbjct: 264 IFNERCKAEGINPKLVLEPGRYLVGDSAILLTSVNTMK-NAAKKFVGIDAGFNTMIRPVM 322
Query: 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCM 442
YDAY H + + A ++AE + +VGP+CE+ D + +RELP ++G + D G Y
Sbjct: 323 YDAYHHAVVANKADKNAE-DTYTIVGPICETGDIMATDRELPEIEKGDVIAFLDVGGYGF 381
Query: 443 SMASTYNLKMRPPEYWV 459
SM+S YN + R E V
Sbjct: 382 SMSSQYNGRPRCAELLV 398
>gi|288962188|ref|YP_003452483.1| diaminopimelate decarboxylase [Azospirillum sp. B510]
gi|288914454|dbj|BAI75939.1| diaminopimelate decarboxylase [Azospirillum sp. B510]
Length = 419
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 214/402 (53%), Gaps = 11/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V ++DV V PFYLYS + + AY A G ++ + YA+KAN+N
Sbjct: 8 NGVLHAESVSLEDVAREV-GTPFYLYSTAALETHYNAYAGAFAGQDAGVCYALKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
++ L LG G +VS E++ AL G + +F+G GK EDL +A + G+ +NV+S
Sbjct: 67 VIRTLANLGAGGDVVSVGEMKRALAGGIPAGRIVFSGVGKTREDLRIALEAGIHQINVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+LE + + + + LR+NPDVD + H +ATG K +KFGI + +
Sbjct: 127 VPELEALSEVASSMRVEAPIALRVNPDVDAKTHAKIATGKKENKFGIDYDHAREIYRRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P +K V H+GS +T + FR A + + ++R G +++ L++GGGLGI Y
Sbjct: 187 AMPG-VKPVAIAVHIGSQLTDLAPFRAAYERVAALLHQLREDGLDINRLDLGGGLGITYK 245
Query: 311 HTGAVLPKPRNLID---TVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+ P +L D VR + + ++ +EPGRSL+ N LV+ V VK + F
Sbjct: 246 NEA-----PPDLADYAAMVRSITGNLGCSITLEPGRSLVGNAGILVSRVIYVKQGLHRRF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +LIRPSLYDAY I V+ DA +DVVGPVCES D +R LP
Sbjct: 301 AIVDAAMNDLIRPSLYDAYHGIVPVAEPAADAVQEPYDVVGPVCESGDTFAVQRPLPPLA 360
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY MASTYN + PE V +I P
Sbjct: 361 DDELVAFLSAGAYGAVMASTYNSRPLVPEVLVNGDRFAVIRP 402
>gi|16272667|ref|NP_438885.1| diaminopimelate decarboxylase [Haemophilus influenzae Rd KW20]
gi|260579819|ref|ZP_05847649.1| diaminopimelate decarboxylase [Haemophilus influenzae RdAW]
gi|1169235|sp|P44316.1|DCDA_HAEIN RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase; Short=DAPDC
gi|1573731|gb|AAC22385.1| diaminopimelate decarboxylase (lysA) [Haemophilus influenzae Rd
KW20]
gi|260093103|gb|EEW77036.1| diaminopimelate decarboxylase [Haemophilus influenzae RdAW]
Length = 415
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 226/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDMPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGNRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + + NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVRIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>gi|390950697|ref|YP_006414456.1| diaminopimelate decarboxylase [Thiocystis violascens DSM 198]
gi|390427266|gb|AFL74331.1| diaminopimelate decarboxylase [Thiocystis violascens DSM 198]
Length = 415
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 225/392 (57%), Gaps = 13/392 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ ED+ + + E P Y+YS+ + R+ A+ +A +I +A+KAN+N
Sbjct: 8 DGVLHAEDIPLTTIAERFGT-PCYVYSRATLERHWRAFDRAFREHPHLICFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L AG DP K IF+G GK +++ A + G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSVGELERVLAAGGDPGKVIFSGVGKRADEIRRALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E +L + R+AG+ K V LR+NPDVD + HPY+ATG K++KFGI + +
Sbjct: 127 ESELLRL---DRLAGELGCKAPVSLRVNPDVDARTHPYIATGLKDNKFGIDIQSAEAVYL 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A PN L++VG CH+GS +T + F DA ++ D++ G +++L++GGGLGI
Sbjct: 184 RAAALPN-LRIVGIDCHIGSQLTDLAPFIDALGRVIALADRLAQSGIILEHLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P + + + SR +I+EPGR++ N L+ V +K ++F
Sbjct: 243 RYREEHPPEPAAYAAALSYQ--LASRPYEVILEPGRAIAGNAGILLTRVEYLKHGEHRHF 300
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L+RP+LY A Q I V A DA+ +++D+VGPVCE+ADFLGKER L +
Sbjct: 301 AILDAAMNDLLRPALYQANQDIVPVVRA-TDADPARYDLVGPVCETADFLGKERTLALRE 359
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY +M+S YN + R E V
Sbjct: 360 DDL-LAVRGSGAYGFTMSSNYNSRPRVAEVMV 390
>gi|392557158|ref|ZP_10304295.1| diaminopimelate decarboxylase [Pseudoalteromonas undina NCIMB 2128]
Length = 417
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVATIAQHY-GTPCYVYSRATFERHYLAFANATQDHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGAGFDIVSKGELARVIKAGGAANKVVFSGVAKTADEIAYALELGIKCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI E + P
Sbjct: 130 LERISEVACELNLDAPISIRVNPDIDAKTHPYISTGLKENKFGIGIESALSVYQHAVSLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L +VG CH+GS +T+ F +A ++ ID+++ G E+ +L+IGGGLG+ Y
Sbjct: 190 G-LTIVGVDCHIGSQLTQTKPFLEALDKLLALIDELKNAGIELSHLDIGGGLGVTYDDEQ 248
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V + L R+L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTQRLANYRHLELIFEPGRAIAANAGILVTQVEFIKQNQDKYFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS + +DVVGPVCE+ DFLGK+R L +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDETPTHNYDVVGPVCETGDFLGKDRPLALK-QGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN + R E V
Sbjct: 366 VQRSAGAYGFTMSSNYNSRPRVAEVMV 392
>gi|392411397|ref|YP_006448004.1| diaminopimelate decarboxylase [Desulfomonile tiedjei DSM 6799]
gi|390624533|gb|AFM25740.1| diaminopimelate decarboxylase [Desulfomonile tiedjei DSM 6799]
Length = 424
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 223/389 (57%), Gaps = 10/389 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE+V V+ + E V P ++YS+ + R+ +++ ++ I+ Y++KA +N IL
Sbjct: 11 LFCENVPVRQICEAV-GTPAFIYSRGTLERHFRIFEEPFLPVDHIVCYSMKACSNIAILR 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ-EGVFVNVDSEFD 193
LG G +VSG EL AL AG D ++ +++G GK ++ A + E + NV+SE +
Sbjct: 70 VFANLGSGTDIVSGGELFRALAAGVDASRIVYSGVGKKASEIDEALKAEILMFNVESEEE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAH 252
L + + GK+ + LR+NP+VDP HPY++TG K +KFGI E+ L+ + A A
Sbjct: 130 LHLVNQRAVALGKRARIALRVNPNVDPLTHPYISTGLKKNKFGIDVERSLELYGRA--AD 187
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
++ +G CH+GS +T++ F +A + I +R++G + YL+IGGGLGI Y
Sbjct: 188 MEGIEAIGVDCHIGSQLTELSPFLEAIDRLKEMIGILRSRGISIQYLDIGGGLGIPYDQE 247
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + + N+ LI+EPGR L+ N LV V K K+FI++D
Sbjct: 248 EP--PAPSLYGTAIVDRIANLNVKLILEPGRLLVGNAGILVTQVLFRKQGPEKSFIIVDA 305
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQ--DAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
+M +LIRPSLY+A+ + V+ + I D+VGP+CES+DFL + RE+ + G
Sbjct: 306 AMNDLIRPSLYNAHHAVWKVARKTNGVNGRIVA-DLVGPICESSDFLAQSREMEAVETGD 364
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY SM+S YN + R E V
Sbjct: 365 LLALMSAGAYGFSMSSNYNSRPRAAEVLV 393
>gi|386389684|ref|ZP_10074496.1| diaminopimelate decarboxylase [Haemophilus paraphrohaemolyticus
HK411]
gi|385695133|gb|EIG25702.1| diaminopimelate decarboxylase [Haemophilus paraphrohaemolyticus
HK411]
Length = 415
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 226/387 (58%), Gaps = 8/387 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + D++ P Y+YS+ + R+ A+ + +I +A+K+N+N +L
Sbjct: 11 LFAEDVAITDIIAE-HGTPAYIYSRATLERHWHAFDNSFGTHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L +G + +K +F+G K ++ A G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLVSGGEASKVVFSGVAKSHSEIERALDVGIRCFNVESIPE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD + HPY++TG K +KFG+ ++ + K P
Sbjct: 130 LHRINDVAGKMGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVQQAREVYRLAKTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+VG CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y G
Sbjct: 190 N-VKIVGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLGGGLGVPY--NG 246
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + +L NL +I+EPGR++ AN LV V +K+N +NF ++D
Sbjct: 247 EEPPHPTEYTEALLAKLKNYPNLEIILEPGRAISANAGILVTKVEYLKSNEDRNFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY I V+ + D + + +DVVGP+CE++DFLGK REL + G +
Sbjct: 307 GMNDMIRPALYEAYMQITEVNQS-LDRKKAIYDVVGPICETSDFLGKGRELAIAE-GDLI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +M+STYN + + E V
Sbjct: 365 AMRSAGAYGATMSSTYNSRPQAVEILV 391
>gi|373467699|ref|ZP_09558992.1| diaminopimelate decarboxylase [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371758041|gb|EHO46818.1| diaminopimelate decarboxylase [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 415
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/407 (35%), Positives = 234/407 (57%), Gaps = 16/407 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKHPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIIRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAG---KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
NV+S +L++I ++IAG K + LR+NPDVD HPY++TG K +KFG+ +
Sbjct: 122 FNVESVSELKHI---NQIAGEMRKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEA 178
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ PN +K+ G CH+GS +T++ F DA ++ +++++ G ++ +L++G
Sbjct: 179 REVYKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIKLKHLDLG 237
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGLG+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K
Sbjct: 238 GGLGVTY--TDETPPHPSDYANALLEKLQNYPELEIILEPGRAISANAGILVAKVQYLKN 295
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
N ++NF + D M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+
Sbjct: 296 NESRNFAITDTGMNDMIRPALYEAYMNIVEIDRTLAREKVI--YDVVGPVCETSDFLGKQ 353
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
REL + G + AGAY SM+S YN + R E V S +I
Sbjct: 354 RELSIAE-GDYIAQCSAGAYGASMSSNYNSRPRTAEVLVDGDKSYLI 399
>gi|344338618|ref|ZP_08769549.1| diaminopimelate decarboxylase [Thiocapsa marina 5811]
gi|343801200|gb|EGV19143.1| diaminopimelate decarboxylase [Thiocapsa marina 5811]
Length = 416
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 220/391 (56%), Gaps = 11/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY EDV + D+ P Y+YS+ + R+ A+ +A ++ +A+KAN+N
Sbjct: 8 DDVLYAEDVPLADIAARF-GTPCYVYSRATLERHWRAFDRAFRDHPHLVCFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG DP K IF+G GK +++ A + G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSLGELERVLAAGGDPAKVIFSGVGKREDEIRFALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + G V LR+NPDVD Q HPY+ATG K +KFGI +
Sbjct: 127 ESELIRLDRIAEEMGVVAPVSLRVNPDVDAQTHPYIATGLKENKFGIDIHAAEEVYVRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L++ G CH+GS +T + F DA ++ +++ G + +L+IGGGLGI Y
Sbjct: 187 ALPN-LRVTGIDCHIGSQLTDLAPFIDALGRVLTLAERLGEIGIPIAHLDIGGGLGIRY- 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
T P+P + + R +++EPGR++ N L+ V +K NGT++F ++
Sbjct: 245 -TEEHPPEPAAYAAAMSYQLGDRPYEILLEPGRAIAGNAGVLLTRVEYLKENGTRHFAIL 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQD--AEISKFDVVGPVCESADFLGKERELPTPDR 428
D +M +L+RP+LY A Q I P D AE +++D+VGPVCE+ DFLGK R+L +
Sbjct: 304 DAAMNDLVRPALYQAVQDI---VPVIHDTEAEPARYDLVGPVCETGDFLGKGRQLALRE- 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L V +GAY +M+S YN + R PE V
Sbjct: 360 GDLLAVRGSGAYGFTMSSNYNSRPRVPEVMV 390
>gi|91202264|emb|CAJ75324.1| similar to diaminopimelate decarboxylase lysa [Candidatus Kuenenia
stuttgartiensis]
Length = 429
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 222/407 (54%), Gaps = 18/407 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCE V+++D++ P Y+YSK I K A + +++ I +++K+N+N + +
Sbjct: 11 LYCERVKIKDIVSET-GTPVYIYSKNAILTRFNELKTAFQEVDATICFSVKSNSNLSVCK 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L G G +VSG EL AL+AG P+K +F G GK +++ A + +F+ NV+S +
Sbjct: 70 ILADEGSGFDVVSGGELFRALKAGGKPSKIVFAGVGKTDKEIQYALENDIFMFNVESIAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
+E+I A+ AGK V LRINPD+D + H TG K +KFGI + ++ KA+
Sbjct: 130 IEHINAAACRAGKTAKVALRINPDIDAKTHAKTTTGKKENKFGIDLIVAETIIEKAKAYT 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N + + G H HLGS I D + +A + +++K R G + YLNIGGG I Y TG
Sbjct: 190 N-VTICGIHVHLGSPIYSADPYVNALKKITMFMEKCRNAGINIQYLNIGGGYCISY--TG 246
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG-TKNFIVIDG 372
+ +P++ + +I+EPGR + N+ LV V K N K F++ D
Sbjct: 247 EKVIEPKDYSTQILPFAKEMKCRVIMEPGRFITGNSGILVTSVIYNKQNSHGKKFVICDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPA-------PQDAEISK-----FDVVGPVCESADFLGKE 420
+M +L+RP+LYDA+ I V+ + D ++K D+VGPVCES+D K+
Sbjct: 307 AMNDLLRPALYDAFHRIWPVNTSVAMPDVETPDTSVAKQGMDLVDIVGPVCESSDVFAKD 366
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
R +P + G L + AGAY +M+S+YN + R E V I+I
Sbjct: 367 RAIPPVNEGDLLAIFSAGAYGFTMSSSYNSRPRSCEILVDRDKYIVI 413
>gi|294651118|ref|ZP_06728454.1| diaminopimelate decarboxylase [Acinetobacter haemolyticus ATCC
19194]
gi|292823012|gb|EFF81879.1| diaminopimelate decarboxylase [Acinetobacter haemolyticus ATCC
19194]
Length = 416
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/391 (35%), Positives = 220/391 (56%), Gaps = 7/391 (1%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E + D + P Y+YSK + ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSL-DQLAQQYGTPLYVYSKATLEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +V+G EL L AG DP K +F+G GK D+ A G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVTGGELARVLAAGGDPAKIVFSGLGKSEADIEKALTVGIACFNV 123
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
+S +L+ I + GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVDATYQY 183
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
+ N L++VG CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 184 AASLSN-LEIVGIDCHIGSQLTETKPFVDALDRVILMIEQLKKLGINLKHIDIGGGLGVC 242
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P +++R + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 243 Y--KDETPPTVAEYANSMRPALEKLGLKVYMEPGRSISANAGALLTKVDLLKPTNHRNFA 300
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+ID +M +LIRP+LY+A+ I+ V+P D E+ +D+VG +CE+ DFLGKER L +
Sbjct: 301 IIDAAMNDLIRPALYEAWMDIQSVNP-NSDVEVKTWDLVGAICETGDFLGKERNLALQEN 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 360 DV-LAVLGAGAYGFVMSSNYNSRGRAAEVMV 389
>gi|416174674|ref|ZP_11609266.1| diaminopimelate decarboxylase, partial [Neisseria meningitidis
OX99.30304]
gi|325129406|gb|EGC52238.1| diaminopimelate decarboxylase [Neisseria meningitidis OX99.30304]
Length = 342
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 207/352 (58%), Gaps = 19/352 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YSK +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEEF-GTPLYVYSKSALTEAFENYQTAFATLNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VS EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSDGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LR+NPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKVAPVSLRVNPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 -----PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ LK+VG CH+GS +T + +A ++ +D++ +G +++L++GGG+GI
Sbjct: 175 RHASRQSHLKIVGIDCHIGSQLTDLSPLVEACERILVLVDQLADEGIVLEHLDLGGGVGI 234
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF
Sbjct: 235 VYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKNF 292
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
+++D +M +L+RP+LYDAY HIE V +D E ++VGP+CE+ DFLGK
Sbjct: 293 VMVDAAMNDLMRPALYDAYHHIEAVE--TKDIEPLTANIVGPICETGDFLGK 342
>gi|383936942|ref|ZP_09990359.1| diaminopimelate decarboxylase [Rheinheimera nanhaiensis E407-8]
gi|383701997|dbj|GAB60450.1| diaminopimelate decarboxylase [Rheinheimera nanhaiensis E407-8]
Length = 418
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 220/390 (56%), Gaps = 13/390 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL-NSIIGYAIKANNNYKIL 133
L+ E + D+ T P Y+YS+ I R+ +A+ A S++ YA+KAN+N IL
Sbjct: 11 LFAEQCALTDIA-TEFGTPCYVYSRATIERHYQAFASAAAAHPQSLVCYAVKANSNLAIL 69
Query: 134 EHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEF 192
L +LG G +VSG ELR + AG D K +F+G K E++ A Q G+ NV+S
Sbjct: 70 NLLARLGSGFDIVSGGELRRVIAAGGDAKKVVFSGVAKTAEEMRFALQLGIKCFNVESVA 129
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
+LE + + K V +R+NPD+D + HPY++TG K +KFGI + L + A
Sbjct: 130 ELERLQQVASSLNIKAPVSIRVNPDIDAKTHPYISTGLKANKFGI-DILLAGDIYRQAAR 188
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ L +VG CH+GS +T+ F +A ++ ID + + G + +++IGGGLG+ Y
Sbjct: 189 YSHLDVVGVDCHIGSQLTETQPFLEALEKLLTLIDALASDGIMLKHIDIGGGLGVTY--D 246
Query: 313 GAVLPKPRNLID-TVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P + I V L L LI+EPGR+++AN L+ V +K KNF ++D
Sbjct: 247 NETPPSPADYISKVVARLTAYPQLELIMEPGRAIMANAGVLLTKVEFLKPGQEKNFAIVD 306
Query: 372 GSMAELIRPSLYDAYQHIELVSPAPQDAE--ISKFDVVGPVCESADFLGKERELPTPDRG 429
+M +LIRP+LY A+Q I P +D+ + +D+VGPVCE+ DFLGK+REL +G
Sbjct: 307 AAMNDLIRPALYSAWQAI---VPVERDSAKTAATYDIVGPVCETGDFLGKDRELAIA-QG 362
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +M+S YN + R E V
Sbjct: 363 DLLAVRSAGAYGFTMSSNYNSRPRAAEVLV 392
>gi|410100043|ref|ZP_11295008.1| diaminopimelate decarboxylase [Parabacteroides goldsteinii
CL02T12C30]
gi|409216598|gb|EKN09582.1| diaminopimelate decarboxylase [Parabacteroides goldsteinii
CL02T12C30]
Length = 385
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/373 (37%), Positives = 202/373 (54%), Gaps = 7/373 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY Y + ++ K YA+KAN N +IL + + G GA VSG E++
Sbjct: 17 PFYYYDVKLLQDTLDMVKNEAGKYGYHAHYAVKANANPRILSIIAENGLGADCVSGGEVK 76
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
AL AGF K +F G GK ++ L +F NV+S +LE I + K +V
Sbjct: 77 AALDAGFPADKIVFAGVGKADWEINLGLDNDIFCFNVESAVELEIIDELAAAKNKVASVA 136
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LRINP+VD H + TG K +KFGI +L LD + A+ +KL+G H H+GS IT
Sbjct: 137 LRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLDNL-ANLKNVKLIGIHFHIGSQITD 195
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-LPKPRNLIDTVRELV 330
+ FR+ + + + + A+G ++ +N GGGLGIDYYH + +P N +L+
Sbjct: 196 MSAFRNLVIRVNEIQEDLEARGIRIENVNFGGGLGIDYYHPNHLPIPAFDNYFAVFNKLL 255
Query: 331 LSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
R + EPGRS++A L++ V VK TK F ++D ELIRP++YDAY I
Sbjct: 256 KVRPGQQVHFEPGRSVVAQCGTLISKVLYVKEGETKKFAILDAGFTELIRPAMYDAYHRI 315
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E +S D E+ +DVVGP+CES+D GK+ EL RG + + AGAY MAS YN
Sbjct: 316 ENIS---SDEEVELYDVVGPICESSDVFGKDVELNKAHRGDLIALRSAGAYGEVMASQYN 372
Query: 450 LKMRPPEYWVRSL 462
+ P Y+ ++
Sbjct: 373 CRQLPKAYYSDTI 385
>gi|387120631|ref|YP_006286514.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415758427|ref|ZP_11481548.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416037436|ref|ZP_11573924.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347995790|gb|EGY36937.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|348655274|gb|EGY70746.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385875123|gb|AFI86682.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 416
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 224/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A++ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKAALERHWYAFENAFGNHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|296445377|ref|ZP_06887335.1| diaminopimelate decarboxylase [Methylosinus trichosporium OB3b]
gi|296257138|gb|EFH04207.1| diaminopimelate decarboxylase [Methylosinus trichosporium OB3b]
Length = 422
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 217/399 (54%), Gaps = 9/399 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F +A G L+ EDV + + E V PFY YS I R+ + A GL++++ YA+
Sbjct: 2 HHFDYRA-GVLHAEDVALPKIAEDVGA-PFYCYSAATIRRHFTVFSAAFAGLDALVCYAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L LG G +VSG ELR A AG +K F+G GK +++ LA EG+
Sbjct: 60 KANSNQAVLALLAGLGAGMDVVSGGELRRARAAGVPASKITFSGVGKTAQEIALAIDEGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
F NV+SE +LE I + G++ ++ LR+NPDVD + H ++TG +KFG+ + +
Sbjct: 120 FCFNVESEPELEAIAAIAAAKGRRAHISLRVNPDVDAKTHAKISTGLAENKFGVPLSRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L +VG H+GS IT + F A L+ + +RA G + ++++GG
Sbjct: 180 DIYAQAARLPG-LDIVGVDMHIGSQITDLRPFDAAFSLLAELVVGLRADGHAISHVDLGG 238
Query: 304 GLGIDYYHTGA--VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GLGI Y H G P + VR + + L+ EPGR ++ N LV V VK
Sbjct: 239 GLGIPY-HAGEDPASYHPDRYAEIVRRHMGALGCKLLFEPGRLIVGNAGVLVTRVLYVKQ 297
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
K F+++D M +L+RP+LYDA+ I + PA EI DVVGPVCE+ D++
Sbjct: 298 GEAKTFVIVDAGMNDLVRPTLYDAWHEIIPVTEPARGRNEILA-DVVGPVCETGDYIALG 356
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
R +P P +G L V +GAY A TYN + PE V
Sbjct: 357 RSIPAPAQGDLLAVLTSGAYGAVQAGTYNSRPLIPEVLV 395
>gi|442610613|ref|ZP_21025324.1| Diaminopimelate decarboxylase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
gi|441747830|emb|CCQ11386.1| Diaminopimelate decarboxylase [Pseudoalteromonas luteoviolacea B =
ATCC 29581]
Length = 416
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 217/389 (55%), Gaps = 12/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + ++ P Y+YS+ + R+ A+ A EG ++ YA+KAN+N +L
Sbjct: 11 LFAEDVAITEIAAKY-GTPCYVYSRRTLERHYRAFTDAAEGHPHLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL L AG D +K +F+G K +++ A + G+ NV+S +
Sbjct: 70 VLARLGAGFDIVSKGELARVLAAGGDASKVVFSGVAKTEDEIAFALEHGIKCFNVESRAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I + K + +R+NPD+D + HPY++TG K +KFGI ++ A P
Sbjct: 130 LKRISTVAEKLNKVAPISIRVNPDIDAKTHPYISTGLKENKFGIDIKQAFDVYQLAYALP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L +VG H+GS +T+V+ F A ++ ID + + G + +++IGGGLG+ Y
Sbjct: 190 G-LSVVGVDFHIGSQLTEVEPFMAAMDKVLALIDTLASAGITLHHIDIGGGLGVPYDQEK 248
Query: 314 AVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V+ +L +L LI EPGR++ AN LV V +K K+F ++D
Sbjct: 249 P--PHPSAYAAEVKAKLANYPHLQLIFEPGRAIAANAGVLVTKVEFIKQTADKHFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISK--FDVVGPVCESADFLGKERELPTPDRGA 430
M +++RPSLY A+Q I PA Q +++ +D+VGPVCE+ DF+GK REL + G
Sbjct: 307 GMNDMLRPSLYGAWQAI---VPALQHTDVAAKVYDIVGPVCETGDFIGKSRELAI-NEGD 362
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LV AGAY SM+S YN + R E V
Sbjct: 363 LLVQRSAGAYGFSMSSNYNSRPRVAEVMV 391
>gi|392544069|ref|ZP_10291206.1| diaminopimelate decarboxylase [Pseudoalteromonas piscicida JCM
20779]
Length = 417
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/391 (38%), Positives = 219/391 (56%), Gaps = 10/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + + E P Y+YSK + R+ A+ A G ++ YA+KAN+N
Sbjct: 8 NGELFAEDVAITTIAEQY-GTPCYVYSKKTLARHYHAFTDAAAGHPHLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L +LG G +VS EL L+AG DP K +F+G K +++ A + G+ NV+S
Sbjct: 67 VLNVLAQLGSGFDIVSKGELARVLKAGGDPQKVVFSGVAKTEDEIAFALETGIKCFNVES 126
Query: 191 EFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L I VA+R+ K + LR+NPD+D + HPY++TG K +KFGI +
Sbjct: 127 IAELHRISEVATRL-DKIAPISLRVNPDIDAKTHPYISTGLKENKFGIDIKAAFDVYQLA 185
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
A P LK+VG H+GS + +V+ F A ++ I ++ G + +L+IGGGLG+ Y
Sbjct: 186 YALPG-LKVVGIDFHIGSQLVEVNPFLAALDKVLALISQLEKAGIYLHHLDIGGGLGVPY 244
Query: 310 YHTGAVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
G P P ++ L +L LI EPGR++ AN LV V +K K+F
Sbjct: 245 --DGEKPPHPSAYAAEIKARLAQFNDLELIFEPGRAIAANAGVLVTKVEFIKPTEHKHFA 302
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D M +++RPSLY A+Q+I V+P D + +DVVGPVCE+ DFLGK+R L
Sbjct: 303 IVDAGMNDMLRPSLYQAWQNIVPVTPR-DDVDAINYDVVGPVCETGDFLGKDRVLKI-KA 360
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LV AGAY +M+S YN + R E V
Sbjct: 361 GDLLVQRSAGAYGFTMSSNYNSRPRCAEVMV 391
>gi|256420790|ref|YP_003121443.1| diaminopimelate decarboxylase [Chitinophaga pinensis DSM 2588]
gi|256035698|gb|ACU59242.1| diaminopimelate decarboxylase [Chitinophaga pinensis DSM 2588]
Length = 435
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 217/405 (53%), Gaps = 20/405 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G LYCEDV V + PFYLYS + + + A E L+ +I +++K++NN
Sbjct: 8 NGVLYCEDVPVDSLPAKGLPTPFYLYSANTLRLHYKKIYGAFEKLDPVICFSVKSSNNVH 67
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L L LG G +VSG EL + ++ D +K +F G GK E++ A V ++N++S
Sbjct: 68 LLNELAALGAGMDIVSGGELFVVKQSNADLSKVVFAGVGKSDEEITDAILSEVGYINIES 127
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDV-DPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
E +L + + ++V+VL+RI PD+ D + + TG K +KFGI ++ ++
Sbjct: 128 EQELARVQELAGDLKREVSVLIRIQPDITDEKTNEKTRTGYKGAKFGIDYANVEALIEEN 187
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
HP +K+ G HCH+GS I+ + + MV + ++ + + LNIGGG +Y
Sbjct: 188 ADHPF-VKIKGLHCHIGSPISSYTFYEECIRKMVGLTESLKQKNIILKVLNIGGGFPANY 246
Query: 310 Y----HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
+ P +I+ + V +I+EPGRS+ ANT LV V VK +G K
Sbjct: 247 MDNDNFSWESFAGP--IIELLEPYVKKEGFKIILEPGRSISANTAVLVTRVLYVKKSGDK 304
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-----------DAEISKFDVVGPVCESA 414
N ++D M ELIRP++Y+A+ I V P Q ++ +DVVGP+CES+
Sbjct: 305 NIAILDAGMTELIRPAMYNAFHFIWPVKPEAQHLLTNRNYPVEQEGLTNYDVVGPICESS 364
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D+L KER LP +G + V GAY M MAS YNL +RP E +
Sbjct: 365 DYLAKERALPPLQQGDYVAVFTVGAYGMVMASNYNLHVRPAEVMI 409
>gi|223042044|ref|ZP_03612221.1| diaminopimelate decarboxylase [Actinobacillus minor 202]
gi|223017161|gb|EEF15596.1| diaminopimelate decarboxylase [Actinobacillus minor 202]
Length = 416
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 225/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ ED+ V D+++ P Y+YS+ + R+ A+ A +I +A+K+N+N +L
Sbjct: 11 LFAEDIAVSDIVKEY-GTPAYIYSRATLERHWHAFDNAFGDHPHLICFAVKSNSNIALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ +LG G +VS EL L AG D +K +F+G K ++ A + G+ NV+S +
Sbjct: 70 IMARLGSGFDIVSQGELERVLVAGGDASKVVFSGVAKSHTEIARALEVGIRCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ ++ + P
Sbjct: 130 LHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVQQAREVYRLASRLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y+ G
Sbjct: 190 N-VKITGMDCHIGSQLTELQPFLDATDRLIILMEQLKEDGILLHHLDLGGGLGVPYH--G 246
Query: 314 AVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E L ++L +I+EPGR++ AN LV V +KTN + F ++D
Sbjct: 247 EEPPHPTEYAKALLEKLKDYQDLEIILEPGRAITANAGILVTKVEYLKTNEDRRFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY + E+ P++ + +DVVGP+CE++DFLGKEREL + G
Sbjct: 307 GMNDMIRPALYEAYMELTEVDRSLPREKAV--YDVVGPICETSDFLGKERELAIAE-GDL 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY +M+STYN + + E V
Sbjct: 364 VAMRSAGAYGATMSSTYNSRPQAVEIMV 391
>gi|33151309|ref|NP_872662.1| diaminopimelate decarboxylase [Haemophilus ducreyi 35000HP]
gi|33147529|gb|AAP95051.1| diaminopimelate decarboxylase [Haemophilus ducreyi 35000HP]
Length = 417
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 225/395 (56%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ E V V+ + T P Y+YS+ + ++ A+ +A +I +A+K+N N +L
Sbjct: 11 LFAEKVAVK-ALATQYGTPAYIYSRATLEQHWRAFDEAFGDRPHLICFAVKSNPNLAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ KLG G +VS EL L AG DP K +F+G K ++ A G+ NV+S +
Sbjct: 70 VMAKLGSGFDIVSQGELERVLAAGGDPAKIVFSGVAKSHIEIRRALAVGIHCFNVESVAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFGI ++ + P
Sbjct: 130 LHRINQIAGELGKIATISLRVNPDVDAGTHPYISTGLKENKFGISVQQARAVYQLASRLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +++VG CH+GS +T++ F DAA ++ ++++ G + +L++GGGLG+ YHT
Sbjct: 190 H-IQVVGLDCHIGSQLTELQPFLDAADRLIVLLEQLYRDGIRLSHLDLGGGLGV-VYHT- 246
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P+P + + + L +I+EPGR++ A+ LV V +K+N ++F ++D
Sbjct: 247 ETPPQPAEYVRALLAKFAHYPELEIILEPGRAITADAGILVTKVEYLKSNEDRHFAIVDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +L+RP+LYDAY HI V + + E +++VVGP+CE+ADFLGK R L + G L
Sbjct: 307 GMNDLLRPALYDAYMHISEVDQSLKRVE-QQYEVVGPICETADFLGKARTLAIAE-GDLL 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
V+ AGAY SM+STYN + + E V S +I
Sbjct: 365 AVYSAGAYGASMSSTYNSRPQAVEIMVDGATSHLI 399
>gi|297618779|ref|YP_003706884.1| diaminopimelate decarboxylase [Methanococcus voltae A3]
gi|297377756|gb|ADI35911.1| diaminopimelate decarboxylase [Methanococcus voltae A3]
Length = 444
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 219/399 (54%), Gaps = 19/399 (4%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE------GLNSIIGYA 123
K DG L+ + +++++ E P Y+ S+ QI N E Y QA G I +A
Sbjct: 18 KKDGILHIDGYKIEEIAEKY-GTPLYIMSETQIKNNFEKYTQAFNRYTEETGKEVIFSFA 76
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
KAN N I L K+GCGA +VS EL +A + K +FNGN KL+E++ + +
Sbjct: 77 YKANTNLAITTLLNKMGCGADVVSSGELYIAKLSKVPSNKIVFNGNCKLVEEIKMGIETD 136
Query: 184 VFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ NVD DL I ++ GK NV R+NP+VDP+ HP ++TG K +KFG+ E
Sbjct: 137 IRAFNVDGISDLILINETAKEMGKIANVSFRVNPNVDPKTHPKISTGLKKNKFGLDIED- 195
Query: 243 QWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L A+K + +VG HCH+GS +T++D F + A ++ +I + +G ++ LN
Sbjct: 196 GTALKAIKMALEMENVNVVGIHCHIGSQLTQIDPFIEEANKLMEFIVSLSEEGIKMRDLN 255
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNH 355
IGGGLGI Y +P +L V + +++ + NLIIEPGRS++ + LV
Sbjct: 256 IGGGLGIP-YDKNTKIPVQDDLAKAVIDTIMTYSDKIELPNLIIEPGRSIVGTSGILVGK 314
Query: 356 VTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESAD 415
K N+I+ID M +++RP++Y+AY I + E+ ++ G +CES+D
Sbjct: 315 TIHRKETKVANWIMIDAGMNDMMRPAIYEAYHEITPCTIREGTEEV--LNIAGGLCESSD 372
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRP 454
GK+R++PT G + V D GAY +SMA+ YN + +P
Sbjct: 373 VFGKDRKIPTIQVGDYVAVLDVGAYGISMANNYNSRGKP 411
>gi|198284947|ref|YP_002221268.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666233|ref|YP_002427632.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
23270]
gi|415960470|ref|ZP_11557661.1| diaminopimelate decarboxylase [Acidithiobacillus sp. GGI-221]
gi|198249468|gb|ACH85061.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518446|gb|ACK79032.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
23270]
gi|339832662|gb|EGQ60562.1| diaminopimelate decarboxylase [Acidithiobacillus sp. GGI-221]
Length = 419
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 213/390 (54%), Gaps = 17/390 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY ED+ +Q++ P Y+YS+ + ++ AL G N+ + YA+KAN+N
Sbjct: 8 DHALYGEDLPLQEIAAHYGT-PCYVYSEAALRERYHSFSAAL-GDNTRVCYAVKANSNLG 65
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL ++G G +VSG EL LRAG D +F+G GK ++ A G+F +NV+S
Sbjct: 66 ILRIFAEMGAGFDIVSGGELERVLRAGGDAGTIVFSGVGKSSVEIRAALGAGIFCLNVES 125
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I + GK+ V LR+NPDVDP H Y+ATG K SKFGI ++ +
Sbjct: 126 AAELWRIADIAADMGKRAPVALRVNPDVDPGTHRYIATGLKESKFGIPMDQARHLYLQAA 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
HP L+L G CH+GS + + +AA + D++ A G + +L++GGG+GI Y+
Sbjct: 186 QHP-ALELKGIACHIGSQLLDLTPLGEAAGRVRALYDELAAHGIALQHLDLGGGVGIRYH 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P + T+ + + + ++E GR+L N L+ V +K NG K F V+
Sbjct: 245 DE--IPPSPADYAWTLDQALQGVAVRRVVELGRALAGNAGVLLTKVEYLKDNGGKQFCVV 302
Query: 371 DGSMAELIRPSLYDAYQHI----ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
D +M +L+RP+LY A+ I + V P DVVGPVCES DFL ++R L
Sbjct: 303 DAAMNDLLRPALYGAWHDILPLHQSVGTGP------AMDVVGPVCESGDFLARDRPL-AA 355
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
G L V AGAY +M+S YN + RPPE
Sbjct: 356 KAGDLLAVMSAGAYGFAMSSNYNSRPRPPE 385
>gi|416062308|ref|ZP_11581401.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069434|ref|ZP_11583276.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444334099|ref|ZP_21149725.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347997270|gb|EGY38284.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348000048|gb|EGY40848.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|443550855|gb|ELT58977.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 416
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R A++ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKAALERYWYAFENAFGNHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSMEQAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|242309007|ref|ZP_04808162.1| diaminopimelate decarboxylase dap decarboxylase [Helicobacter
pullorum MIT 98-5489]
gi|239524431|gb|EEQ64297.1| diaminopimelate decarboxylase dap decarboxylase [Helicobacter
pullorum MIT 98-5489]
Length = 400
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 211/372 (56%), Gaps = 10/372 (2%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
+ P + Y +I +K A G ++I YA+KAN+N +++ L L GA VS E
Sbjct: 8 QTPIFAYDFDKIEEYYHQFKSAFSGRKTLICYALKANSNLSVVKKLASLESGADCVSLGE 67
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
++ A+ AG P K I++G GK E++ A + G+ F+N++S+ +L + ++ K
Sbjct: 68 IKRAILAGIPPYKIIYSGVGKQEEEIKEAIKLGILFINIESKAELFKVESIAKNLNTKAR 127
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE-LKLVGAHCHLGST 268
+ +R+NPD+DPQ HPY++TG K +KFGI ++ + + AH +E L+ +G H H+GS
Sbjct: 128 ISIRVNPDIDPQTHPYISTGLKENKFGIEIQEAKSLY--LHAHKSEFLEPIGIHFHIGSQ 185
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
+TK+ ++A + + + A ++ + +IGGGLGI Y + P + ++ E
Sbjct: 186 LTKLQPIYESAQKIAKLVHSLLALKIDIKFFDIGGGLGITYSDETTI--NPYDYAQSILE 243
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY-Q 387
+ +L +I EPGR +I N + V K + K F+++DG+M +LIRPSLY+AY Q
Sbjct: 244 CLRGLDLTIICEPGRFIIGNAGVFLVKVLYEKISQNKRFVIVDGAMNDLIRPSLYNAYHQ 303
Query: 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAST 447
I L P E S D+VGP+CES D+LGK ELP G L + +GAY SM+S
Sbjct: 304 IIPLTQP---QGEKSPADIVGPICESGDYLGKNIELPPLKEGDVLAILSSGAYGFSMSSN 360
Query: 448 YNLKMRPPEYWV 459
YN + R E +
Sbjct: 361 YNTRPRCAEVAI 372
>gi|325111253|ref|YP_004272321.1| diaminopimelate decarboxylase [Planctomyces brasiliensis DSM 5305]
gi|324971521|gb|ADY62299.1| diaminopimelate decarboxylase [Planctomyces brasiliensis DSM 5305]
Length = 429
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 215/395 (54%), Gaps = 14/395 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LYCEDV V+ + E P ++YS+ + K+A E + +I Y++KAN+N +L+
Sbjct: 15 LYCEDVPVRQLAEEY-GTPLWVYSEAKFLEEFRQLKKAFEACDPVICYSVKANSNLHVLK 73
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFD 193
L + G +VSG EL L+AG D T+ +F G GK ++ LA ++ + + NV+SE +
Sbjct: 74 ALNEAGSSFDVVSGGELFRVLKAGADTTRVVFAGVGKTDAEIRLALEQNILMFNVESEAE 133
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I +R V LR+NPD+D + H TG K +KFG+ E+ D V P
Sbjct: 134 LDAIAAVAREMDVVAPVALRLNPDIDAKTHKKTTTGKKGNKFGMDIERHNALADKVLTEP 193
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ L+L G H HLGS I D + AA V+ I +R +G ++ ++N+GGG + Y +
Sbjct: 194 H-LELRGIHMHLGSPILTTDPYEQAAKKAVDVIADLRKKGHDISWVNLGGGFALSYRNDE 252
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
A P + + + L +EPGRS+I N C LV+ V K G K F++ DG+
Sbjct: 253 A--PDYSTYASVIVPHIQAAGCKLALEPGRSIIGNACVLVSQVIYTKREGGKLFVIQDGA 310
Query: 374 MAELIRPSLYDAYQHIELVS---PAPQDAEISKF------DVVGPVCESADFLGKERELP 424
M +L RP++YDA+ + V P P D E ++ DVVGPVCES+D+ K+R LP
Sbjct: 311 MNDLARPAMYDAFHRVWPVQTDVPLPYDCEAAEIEGCEATDVVGPVCESSDYFAKDRALP 370
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
RG + AGAY +M+S YN + R E V
Sbjct: 371 PLQRGDLISTFSAGAYGSAMSSNYNSRPRGAEVLV 405
>gi|261403462|ref|YP_003247686.1| diaminopimelate decarboxylase [Methanocaldococcus vulcanius M7]
gi|261370455|gb|ACX73204.1| diaminopimelate decarboxylase [Methanocaldococcus vulcanius M7]
Length = 438
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 222/387 (57%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQITRN----VEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI N +EA+K+ E G ++ YA KAN N I
Sbjct: 24 DAVELAEKFGTPLYVMSEEQIKINYNKYIEAFKRWEEETGKEFVVAYAYKANANLAITRL 83
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
L KLGCGA +VSG EL +A + K +FNGN K E++++ + + NVDS +L
Sbjct: 84 LSKLGCGADVVSGGELYIAKLSNVPSRKIVFNGNCKTKEEIIMGIETKIRSFNVDSISEL 143
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK--AH 252
I ++ G+ N+ RINP+V+P+ HP ++TG K +KFG+ E L A+K
Sbjct: 144 ILINETAKELGETANIAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GVALKAIKMATE 202
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ +VG HCH+GS +T + F + A +++++ +++ +G E++ +N+GGGLGI Y
Sbjct: 203 MEHVNVVGVHCHIGSQLTDISPFIEEARKVMDFVVELKKEGIEIEDVNLGGGLGIP-YEK 261
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 262 DKQIPTQKDLADAIINTLLEYKDKVEMPNLILEPGRSLVATAGYLLGRVHHIKETPITKW 321
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++ID M +++RP++Y+AY HI ++ +D E K + G +CES+D G++REL P+
Sbjct: 322 VMIDAGMNDMMRPAMYEAYHHI--INCKVKD-EKEKVSIAGGLCESSDVFGRDRELDKPE 378
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 379 VGDILAIFDVGAYGISMANNYNARGRP 405
>gi|374578258|ref|ZP_09651354.1| diaminopimelate decarboxylase [Bradyrhizobium sp. WSM471]
gi|374426579|gb|EHR06112.1| diaminopimelate decarboxylase [Bradyrhizobium sp. WSM471]
Length = 421
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 211/399 (52%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFTDAFAGDKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG K +F+G GK +L A G+ +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPANKILFSGVGKTEAELRAALAAGILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATEMGKTARISIRVNPDVDAGTHAKISTGKSENKFGIPIAYARKVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G + +++ GGGLGI YY
Sbjct: 187 KLPG-IEVTGTDVHIGSQITDLSKMEIAFRILSEFVQTLRADGHNISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ + A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQPAKGAATIMADVVGPVCETGDYLALDRTLPTPRPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LIAIMTAGAYGAVQAGTYNTRPLVPEVLVKGDQYAVVRP 404
>gi|226952075|ref|ZP_03822539.1| diaminopimelate decarboxylase [Acinetobacter sp. ATCC 27244]
gi|226837167|gb|EEH69550.1| diaminopimelate decarboxylase [Acinetobacter sp. ATCC 27244]
Length = 407
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 211/368 (57%), Gaps = 6/368 (1%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YSK + ++ +A + ++ I +A+K+N+N +L L KLG G +V+G EL
Sbjct: 18 PLYVYSKATLEKHYLDMDRAFDFIDHQICFAVKSNSNIAVLNVLAKLGAGFDIVTGGELA 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L AG DP K +F+G GK D+ A G+ NV+S +L+ I + GKK +
Sbjct: 78 RVLAAGGDPAKIVFSGLGKSEADIEKALTVGIACFNVESHAELDRIQKVAAKLGKKAPIS 137
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K +KFGI ++ + + N L++VG CH+GS +T+
Sbjct: 138 LRVNPDVDAKTHPYISTGLKENKFGIPSDAVDATYQYAASLSN-LEIVGIDCHIGSQLTE 196
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
F DA ++ I++++ G + +++IGGGLG+ Y P +++R +
Sbjct: 197 TKPFVDALDRVILMIEQLKKLGINLKHIDIGGGLGVCY--KDETPPTVAEYANSMRPALE 254
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
L + +EPGRS+ AN L+ V +K +NF +ID +M +LIRP+LY+A+ I+
Sbjct: 255 KLGLKVYMEPGRSISANAGTLLTKVDLLKPTNHRNFAIIDAAMNDLIRPALYEAWMDIQS 314
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
V+P D E+ +D+VG +CE+ DFLGKER L + L V AGAY M+S YN +
Sbjct: 315 VNP-NSDVEVKTWDLVGAICETGDFLGKERNLALQENDV-LAVLGAGAYGFVMSSNYNSR 372
Query: 452 MRPPEYWV 459
R E V
Sbjct: 373 GRAAEVMV 380
>gi|167854915|ref|ZP_02477691.1| diaminopimelate decarboxylase [Haemophilus parasuis 29755]
gi|167853982|gb|EDS25220.1| diaminopimelate decarboxylase [Haemophilus parasuis 29755]
Length = 419
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 225/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVAITDIIAQ-HGTPAYIYSRATLERHWHAFDKAFGDHPHLICFAVKSNSNLALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG D +K +F+G K ++ A + G+ NV+S +
Sbjct: 70 VIARLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSHREIARALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I + GK + LR+NPDVD + HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKRINEVAGQLGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVKEAREVYRFATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y T
Sbjct: 190 H-VKITGMDCHIGSQLTELQPFLDATDRVIVLMEQLKQDGIELHHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + +L NL +I+EPGR++ AN LV V +K N + F ++D
Sbjct: 247 ETPPHPMEYAAALLHKLRTYPNLEIILEPGRAITANAGILVTKVEYIKQNEDRRFAIVDT 306
Query: 373 SMAELIRPSLYDAY-QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY Q IE+ ++ I +DVVGP+CE++DFLGK+REL T G
Sbjct: 307 GMNDMIRPALYEAYMQIIEVNQSLVREKAI--YDVVGPICETSDFLGKQREL-TITEGDL 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY +M+STYN + + E V
Sbjct: 364 IAMRSAGAYGATMSSTYNSRPQAIEVMV 391
>gi|431932689|ref|YP_007245735.1| diaminopimelate decarboxylase [Thioflavicoccus mobilis 8321]
gi|431830992|gb|AGA92105.1| diaminopimelate decarboxylase [Thioflavicoccus mobilis 8321]
Length = 415
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 216/389 (55%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ EDV + + E P Y+YS+ + R+ A+ QA +I +A+KAN+N
Sbjct: 8 DDALWAEDVPLAAIAERFGT-PCYVYSRATLERHWHAFDQAFREHPHLICFAVKANSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +LG G +VS EL L AG DP + IF+G GK +++ A + G+ NV+S
Sbjct: 67 VLDVLARLGAGFDIVSVGELERVLAAGGDPARVIFSGVGKREDEMRRALEVGIRGFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + +R G+ V LR+NPDVD + HPY+ATG K +KFGI + +
Sbjct: 127 EAELVRLDRVAREMGRIAPVSLRVNPDVDARTHPYIATGLKENKFGISIQDAETVYRHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++ G CH+GS +T++ F DA ++ ++ A G E+ +L++GGGLGI Y
Sbjct: 187 ALPG-LQVTGIDCHIGSQLTELAPFVDALQRVLALARRLAALGIEITHLDLGGGLGIRYV 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P+P + +R+ + +++EPGR++ N L+ V +K K F ++
Sbjct: 246 DESP--PEPADYASVIRQHLADLPFEVLLEPGRAIAGNAGVLLTRVEYLKPTAHKQFAIL 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RP+LY A Q I V + + +D+VGPVCE+ DFLGKER L G
Sbjct: 304 DAAMNDLLRPALYQARQAIVPVRRTAHEPS-AVYDLVGPVCETGDFLGKERALALAP-GD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V +GAY M+S YN + R E V
Sbjct: 362 LLAVRGSGAYGFVMSSNYNSRPRAAEVMV 390
>gi|342905062|ref|ZP_08726854.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21621]
gi|341951892|gb|EGT78441.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21621]
Length = 415
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 230/404 (56%), Gaps = 10/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
+N +L + KLG G +VS EL L A D +K +F+G K E+++ A + G+
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAASGDASKVVFSGVAKSREEIMRALEVGIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F DA ++ +++++ G ++ ++++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDATDRLIILMEQLKEDGIKLKHIDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + + L +I+EPGR++ AN LV V +K N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKNNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF + D M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+REL
Sbjct: 299 RNFAITDTGMNDMIRPALYEAYMNIVEIDRTLTREKAI--YDVVGPVCETSDFLGKQREL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G + AGAY SM+S YN + R E V S +I
Sbjct: 357 SIAE-GDYIAQCSAGAYGASMSSNYNSRPRTAEVLVDGDKSYLI 399
>gi|406912112|gb|EKD51776.1| hypothetical protein ACD_62C00178G0003 [uncultured bacterium]
Length = 435
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/392 (33%), Positives = 217/392 (55%), Gaps = 9/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+CED ++ +++ P Y+YS + +++ A E ++ Y++KAN+N
Sbjct: 11 DNRLFCEDCDLERIVKKT-GTPVYIYSYRALCEQFQSFASAFESHKHLVCYSMKANSNQA 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDS 190
IL L L CGA +VSG E++ AL AG DP K +++G GK +++ A + + + N++S
Sbjct: 70 ILNTLFNLNCGADVVSGGEIKRALLAGCDPQKIVYSGVGKTEQEIAYALDQNILMFNIES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE-KLQWFLDAV 249
+ +L I ++ K ++ +R+NP+VD + H Y++TG K +KFG+ ++ LQ + A+
Sbjct: 130 QQELLLIQSIAKTKNKVASISVRVNPNVDAKTHAYISTGMKKNKFGVNHQAALQIYQQAL 189
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ + VG CH+GS IT+ F DA +++ + ++ ++Y+++GGGLGI Y
Sbjct: 190 VC--DHINPVGISCHIGSQITQTQPFADAMIILTKVLHDVKNMSISINYIDVGGGLGIRY 247
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN-FI 368
++P + +++ + LI EPGR L+ N LV V K T + F
Sbjct: 248 --RDEIIPSAQEYANSILGPLKDFGATLITEPGRFLVGNAGILVTRVLYQKQGETSDLFT 305
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++D + +L RP LY AY I V + DA I ++ GP+CE+ D K+R LP +
Sbjct: 306 IVDSAFNDLKRPMLYGAYHEIVPVIKSATDALIPT-NIEGPICETGDRFAKQRPLPPLKQ 364
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
L + GAY MSMASTYN + R PE V+
Sbjct: 365 NDLLAIMSTGAYGMSMASTYNSRPRAPEVLVK 396
>gi|239500988|ref|ZP_04660298.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB900]
gi|421649544|ref|ZP_16089935.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC0162]
gi|421677869|ref|ZP_16117758.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC111]
gi|425750291|ref|ZP_18868258.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-348]
gi|445459944|ref|ZP_21447853.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC047]
gi|408513548|gb|EKK15166.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC0162]
gi|410392750|gb|EKP45107.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC111]
gi|425487693|gb|EKU54051.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-348]
gi|444773179|gb|ELW97275.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC047]
Length = 416
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 228/400 (57%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDEIPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|374312088|ref|YP_005058518.1| diaminopimelate decarboxylase [Granulicella mallensis MP5ACTX8]
gi|358754098|gb|AEU37488.1| diaminopimelate decarboxylase [Granulicella mallensis MP5ACTX8]
Length = 423
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 208/372 (55%), Gaps = 10/372 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS I +Q G+ I YA+KAN++ ++ L +LGCG +VSG EL
Sbjct: 34 PLYVYSGDAIAERARMLQQEFAGVLHTICYAVKANSSLAVMRMLGELGCGFDIVSGGELE 93
Query: 153 LALRAGFDP-TKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKVNV 210
RA + + +F+G GK ++ A G+ + NV+SE +LE + ++ GK +
Sbjct: 94 RVRRAAPEALGRVVFSGVGKQAWEMDAALDAGILLFNVESEAELEVLAERAQALGKIARI 153
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKL-QWFLDAVKAHPNELKLVGAHCHLGSTI 269
LR+NPDV + HPY++TG + KFGI E+ + + AV+ ++ G H+GS I
Sbjct: 154 ALRVNPDVFAETHPYISTGLREHKFGIAIERAREVYQRAVRMQG--IEPAGVSVHIGSQI 211
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTVR 327
V+ F +A + + ++ +R G ++ Y++ GGG GI+Y P R +R
Sbjct: 212 RSVEPFAEAVRRVRSLVEDLRGDGMDIRYVDAGGGFGIEY-GKAEFDPAARVAEYARALR 270
Query: 328 ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQ 387
E++ N +L++EPGR L+A L+ V K NG K+F++ D +M +LIRP+LY A
Sbjct: 271 EVLDGLNAHLLLEPGRFLVAQAGALLTRVLYTKQNGKKHFVITDAAMNDLIRPALYQA-- 328
Query: 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAST 447
H E+V + + D+VGPVCES DF ++RE +G +V+ DAGAY MS+AS
Sbjct: 329 HHEIVPVVKDERAVQVADIVGPVCESGDFFARDRETQELRQGDLVVLLDAGAYGMSLASH 388
Query: 448 YNLKMRPPEYWV 459
YN ++RP E V
Sbjct: 389 YNTRVRPAEVLV 400
>gi|219871605|ref|YP_002475980.1| diaminopimelate decarboxylase [Haemophilus parasuis SH0165]
gi|219691809|gb|ACL33032.1| diaminopimelate decarboxylase [Haemophilus parasuis SH0165]
Length = 419
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 225/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV + D++ P Y+YS+ + R+ A+ +A +I +A+K+N+N +L
Sbjct: 11 LFAEDVAIADIIAQ-HGTPAYIYSRATLERHWHAFDKAFGDHPHLICFAVKSNSNLALLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG D +K +F+G K ++ A + G+ NV+S +
Sbjct: 70 VMARLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKTHREIARALEVGIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L+ I + GK + LR+NPDVD + HPY++TG K +KFG+ ++ + P
Sbjct: 130 LKRINEVAGQLGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVKEAREVYRFATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ +K+ G CH+GS +T++ F DA ++ +++++ G E+ +L++GGGLG+ Y T
Sbjct: 190 H-VKITGMDCHIGSQLTELQPFLDATDRVIVLMEQLKQDGIELHHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDT-VRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + +L NL +I+EPGR++ AN LV V +K N + F ++D
Sbjct: 247 ETPPHPMEYAAALLNKLRAYPNLEIILEPGRAITANAGILVTKVEYIKQNEDRRFAIVDT 306
Query: 373 SMAELIRPSLYDAY-QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY+AY Q IE+ ++ I +DVVGP+CE++DFLGK+REL + G
Sbjct: 307 GMNDMIRPALYEAYMQIIEVNQSLVREKAI--YDVVGPICETSDFLGKQRELAIAE-GDL 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + AGAY +M+STYN + + E V
Sbjct: 364 IAMRSAGAYGATMSSTYNSRPQAIEVMV 391
>gi|392549360|ref|ZP_10296497.1| diaminopimelate decarboxylase [Pseudoalteromonas rubra ATCC 29570]
Length = 417
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/395 (35%), Positives = 214/395 (54%), Gaps = 7/395 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L+ E V + D+ P Y+YS+ + R+ A+ A +G ++ YA+KA
Sbjct: 3 FFHYQDNQLHAEQVPISDIAAQY-GTPCYVYSRKTLERHYHAFTDAAQGHPHLVCYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L+AG DP K +F+G K +++ A + G+
Sbjct: 62 NSNLAVLNVLARLGAGFDIVSQGELARVLKAGGDPAKIVFSGVAKTAQEIAFALKTGIKC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L I +R V +R+NPD+D + HPY++TG K +KFGI ++
Sbjct: 122 FNVESAAELHRISEVARELNLLAPVSIRVNPDIDAKTHPYISTGLKENKFGIDIKEAFNV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A P L++VG H+GS +T+V F A ++ + + + G + +L+IGGGL
Sbjct: 182 YQLACALPG-LEVVGIDFHIGSQLTEVTPFIAALDKVLALVQTLESAGITLKHLDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y P P V+ L ++L LI EPGR++ AN LV V +K
Sbjct: 241 GVPY--DSEKPPHPSAYAAEVKARLADYQHLELIFEPGRAIAANAGLLVTKVEYLKPTKD 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D M +++RPSLY A+Q I V+P D + +DVVGPVCE+ DF+GK+R L
Sbjct: 299 KHFAIVDAGMNDMLRPSLYQAWQQIIAVAPRQDDTPLHTYDVVGPVCETGDFIGKDRPLA 358
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L AGAY +M+S YN + R E V
Sbjct: 359 I-QPGDLLAQRGAGAYGFTMSSNYNSRPRIAEIMV 392
>gi|260753687|ref|YP_003226580.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553050|gb|ACV75996.1| diaminopimelate decarboxylase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 421
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 210/387 (54%), Gaps = 10/387 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---SIIGYA 123
FS K +G L ED+ + ++ P Y+YS +T + +AL+G +++ +A
Sbjct: 4 FSLK-NGTLCVEDIPLPEIAAQY-GTPCYVYSHSYLTERARRFTKALDGAGKGKALVAFA 61
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN + IL K G GA +VS E+ A+ AG P + +F+G GK E++ A + G
Sbjct: 62 VKANPSQAILASFAKEGLGADVVSAGEIHRAVHAGIPPERIVFSGVGKTAEEMRYALEIG 121
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S ++E + + GKK V LRINPDVDP H +ATG ++KFGI E
Sbjct: 122 IGQFNIESVSEIEMLAEVATSLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEDA 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + ++P+ LK+ G H+GS IT + F AA + I + G ++ ++G
Sbjct: 182 LSAYEKLASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHTIETADLG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLG+ Y P + ++ + N LI EPGRSLIAN L++ V VK +
Sbjct: 241 GGLGVRYKDDQPEPPSIEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGILLSKVIRVKES 300
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
T F+++D +M +L+RP+LYDAY I+ V+P+ Q + D+VGPVCE+ D R
Sbjct: 301 KTARFVILDAAMNDLVRPTLYDAYHEIKAVTPSVQ---AYQADIVGPVCETGDIFAGNRS 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYN 449
+P + + AGAY +MAS YN
Sbjct: 358 IPAVKPDDLVAIMSAGAYGATMASAYN 384
>gi|186477550|ref|YP_001859020.1| diaminopimelate decarboxylase [Burkholderia phymatum STM815]
gi|184194009|gb|ACC71974.1| diaminopimelate decarboxylase [Burkholderia phymatum STM815]
Length = 420
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 217/392 (55%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +T+ AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAVSLAEQF-GTPLYVYSRDALTKAWHAYADACAGRRATVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L ++G G +VSG EL L AG +F+G GK + ++ A GV NV+S
Sbjct: 69 VLNLFARMGAGFDIVSGGELARVLAAGGKAENTVFSGVGKSVAEMRDALAAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK V LR+NPDVD + HPY++TG K++KFG+ + + A
Sbjct: 129 IPELDRLNAVAGEMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFDDARATYRAAA 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A + L +VG CH+GS IT+V + DA ++ + +I A G + ++++GGGLGI Y
Sbjct: 189 AMKH-LDVVGIDCHIGSQITEVAPYLDAVDKLLELVAQIEADGVTIKHVDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + + T+ + + +R + + EPGRSL+ N L+ V +KT KNF
Sbjct: 247 -DDETPPDIGDFVRTLLDRIEARGHGHREVYFEPGRSLVGNAGMLLTRVEFLKTGAEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+AY IE V +D +D+VGPVCES D+LG+ER L +
Sbjct: 306 AIVDAAMNDLARPAMYEAYHAIEPV--VQRDGARHVYDIVGPVCESGDWLGRERRLAV-E 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 363 PGDLLAIRSAGAYGFAMSSNYNTRARAAEVMV 394
>gi|313238222|emb|CBY13314.1| unnamed protein product [Oikopleura dioica]
Length = 415
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 216/394 (54%), Gaps = 18/394 (4%)
Query: 75 LYCEDVRVQDVMETVE-KRPFYLYSKPQITRNVEAYKQALEGLNSI--IGYAIKANNNYK 131
L ED+ +++ + + P ++YS+ + NV++Y L+ L S+ + +++K+N N
Sbjct: 9 LCVEDLSLENFAAQINLEDPVFVYSENSLRSNVKSYLSGLDALKSMTQLNFSMKSNFNPA 68
Query: 132 ILEHLRKLG-CGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDS 190
+++ L+ G G VSG EL LA + F+ K IFNGNGK ++ A + G +NVDS
Sbjct: 69 VIKVLKSAGVTGLTTVSGGELDLAAKLEFNSDKVIFNGNGKCDGEVRTAIERGHIINVDS 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN-KNSKFGIRNEKLQWFLDAV 249
FD I SR +K VL+RINP++DP+VH Y T + K KFG+ E++ +
Sbjct: 129 WFDYVRISSTSRALNQKCQVLIRINPNIDPKVHQYNTTASGKACKFGVIQEEISSLARKI 188
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAV---LMVNYIDKIRAQGFEVDYLNIGGGLG 306
N L L+G HCHLGSTI ++ R + +++ I G +V +N+GGGL
Sbjct: 189 FEDEN-LSLLGIHCHLGSTINDLEPIRQCSTTLKIIMESIAHFLEPGRKV--VNVGGGLA 245
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I+Y P P+ + R+ +I EPGRSL+ N+ V GVK + N
Sbjct: 246 INYEKQAHGYPTPQEYTECFTN--FGRDYLIIFEPGRSLVGNSAVCVGRSLGVKND---N 300
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
+V + SM E IRP+LY A+ H+ ++ A+ F VVGPVCESADFL K ELP+
Sbjct: 301 ILVTNMSMTECIRPALYQAF-HLVTLTKKTSKADSKVFKVVGPVCESADFLNKAAELPST 359
Query: 427 DRGAGLVV-HDAGAYCMSMASTYNLKMRPPEYWV 459
LVV D GAYC ++S YN++ R EY V
Sbjct: 360 IENNQLVVLWDVGAYCHVLSSNYNMRPRRAEYLV 393
>gi|430377249|ref|ZP_19431382.1| diaminopimelate decarboxylase [Moraxella macacae 0408225]
gi|429540386|gb|ELA08415.1| diaminopimelate decarboxylase [Moraxella macacae 0408225]
Length = 436
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 209/374 (55%), Gaps = 14/374 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YSK I N +AY + S I YA+KAN+N +L+ L K G G LV+G EL
Sbjct: 45 PVYVYSKQAILANYQAYVDGFSDIESQICYAVKANSNLAVLQTLAKAGAGFDLVTGGELA 104
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
L+AG DP K +F+G GK D+ A Q G+ NV+S +L I ++ K +
Sbjct: 105 RVLKAGGDPNKIVFSGLGKSHADIAQALQVGIACFNVESVSELYRISEVAQKMAKTAPIS 164
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
LR+NPDVD + HPY++TG K++KFGI + + K PN L++VG CH+GS +++
Sbjct: 165 LRVNPDVDAKTHPYISTGLKDNKFGISHAEAIQVYKLAKTLPN-LEIVGIDCHIGSQLSE 223
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL-- 329
V+ F DA ++ I +++ + ++++GGGLG+ Y P NL D L
Sbjct: 224 VNPFIDALDKVIELICQLKTHDIYLKHIDLGGGLGVRYTD-----ETPVNLTDFANALLP 278
Query: 330 -VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ + L L +EPGRS++AN L+ V +K KNF V+D +M +LIRP+LY+A
Sbjct: 279 KLKTLGLKLYLEPGRSIVANAGVLLTKVDILKPTEHKNFAVVDCAMNDLIRPTLYEAVMA 338
Query: 389 ---IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA 445
+ L + A A+ +D+VG +CE+ DFL K R L + L + AGAY SM+
Sbjct: 339 VIPVNLDTHADNKADNKIWDIVGAICETGDFLAKNRTLALAENDL-LAITGAGAYSFSMS 397
Query: 446 STYNLKMRPPEYWV 459
S YN + R E +
Sbjct: 398 SNYNSRPRACETLI 411
>gi|417554204|ref|ZP_12205273.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-81]
gi|417560946|ref|ZP_12211825.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC137]
gi|421199032|ref|ZP_15656197.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC109]
gi|421454451|ref|ZP_15903798.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-123]
gi|421632061|ref|ZP_16072724.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-13]
gi|421806087|ref|ZP_16241960.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-A-694]
gi|395523528|gb|EJG11617.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC137]
gi|395565928|gb|EJG27575.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC109]
gi|400212241|gb|EJO43200.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-123]
gi|400390621|gb|EJP57668.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-81]
gi|408710607|gb|EKL55833.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-13]
gi|410407561|gb|EKP59545.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-A-694]
Length = 416
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGISLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|238025969|ref|YP_002910200.1| diaminopimelate decarboxylase [Burkholderia glumae BGR1]
gi|237875163|gb|ACR27496.1| Diaminopimelate decarboxylase [Burkholderia glumae BGR1]
Length = 423
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 215/392 (54%), Gaps = 10/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E + + + + P Y+YS+ +T +AY +A EG + + A+KAN+N
Sbjct: 10 DGTLHAEGIPADKLADHFDT-PLYVYSRAALTAAYQAYAKACEGRRASLHVAVKANSNLG 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G K +++ LA + GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGKAEHVVFSGVAKSADEMRLALEAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GK+ V LR+NPDVDP+ HPY++TG K +KFG+ + A
Sbjct: 129 VPELDRLNAVAGSLGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGVAFADARATYRAAD 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L++ G CH+GS IT++ + DA +++ +++I A G + ++++GGGLGI Y
Sbjct: 189 ALPN-LQVAGIDCHIGSQITELSPYLDALDKVLDLVEQIEADGIAIHHVDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + + + +R + L EPGRSL N L+ V +K KNF
Sbjct: 247 -ADETPPDIGAFVQALFAKLDARGHGHRELCFEPGRSLTGNAGILLTRVEFLKPGEEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D M +L RP++Y+AY I V A + +DVVGPVCES D+LG+ER L
Sbjct: 306 AIVDAGMNDLARPAMYEAYHAIVPVRQTSAHAS-AVYDVVGPVCESGDWLGRERTLAIA- 363
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY +M+S YN + R E V
Sbjct: 364 AGDLLAIRSAGAYGFAMSSNYNTRPRAAEVLV 395
>gi|220933233|ref|YP_002512132.1| diaminopimelate decarboxylase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219994543|gb|ACL71145.1| diaminopimelate decarboxylase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 414
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 218/391 (55%), Gaps = 12/391 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E+V + + P Y+YS+ + R+ A+ AL +I YA+KAN++
Sbjct: 8 DGVLHAEEVPLSQIA-AAHGTPCYVYSRATLERHWRAFDTALGDHPHLICYAVKANSSLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL LRAG + ++ +F+G GK +++ A + G+ NV+S
Sbjct: 67 VLNVLARLGSGFDIVSVGELERVLRAGGEASRVVFSGVGKRADEMRRALEVGIRCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDA 248
E +L + + G + V +R+NPDVD + HPY++TG K +KFG IR + A
Sbjct: 127 EAELARLNGVAGELGVEAPVSIRVNPDVDARTHPYISTGLKENKFGVDIRVAPALYRQAA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
AH +++VG CH+GS +T + F DA ++ + A G +D+L++GGGLGI
Sbjct: 187 DMAH---IRVVGVDCHIGSQLTGLSPFVDALKRVLELARTLEADGIGLDHLDLGGGLGIR 243
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFI 368
Y P P + E + +++EPGR++ N L+ V +K K+F
Sbjct: 244 YRDEEP--PLPDAYARALFEGLADTRYEILLEPGRAIAGNAGVLLTRVEYLKHTEHKDFA 301
Query: 369 VIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
V+D +M +LIRP+LY A+Q E+V AP+ E +DVVGPVCE+ DFLGKER L +
Sbjct: 302 VVDAAMNDLIRPALYGAWQ--EIVPVAPRLGESRTYDVVGPVCETGDFLGKERALVLAED 359
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY +M+S YN + R E V
Sbjct: 360 DL-LAVRSAGAYGFTMSSNYNTRPRAAEVMV 389
>gi|389693575|ref|ZP_10181669.1| diaminopimelate decarboxylase [Microvirga sp. WSM3557]
gi|388586961|gb|EIM27254.1| diaminopimelate decarboxylase [Microvirga sp. WSM3557]
Length = 422
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 137/409 (33%), Positives = 215/409 (52%), Gaps = 10/409 (2%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + DG L+ E V ++ + + V PFY YS + R+ + +A ++++ YA+
Sbjct: 2 HHFAYR-DGVLHAEGVDLRRLADEV-GTPFYCYSSATLERHYRVFAEAFADTDALVCYAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS ELR AL AG + +F+G GK ++ A G+
Sbjct: 60 KANSNQAVLRTLGRLGAGMDIVSEGELRRALAAGVPGERIVFSGVGKTRSEMAFALDSGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI---RNE 240
NV+SE +LE + + G + V +RINPDVD + H ++TG +KFGI R
Sbjct: 120 LCFNVESEPELEALSEVALSKGTRARVSIRINPDVDAKTHAKISTGKSENKFGIPIARAR 179
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
++ A+K + + G H+GS IT + + +A L+ + A G ++ +++
Sbjct: 180 EVYARAAALKG----IAVTGVDMHIGSQITDLAPYDNATALLAELARDLMADGHKLHHID 235
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
+GGGLGI Y P P+ ++ L L+ E GR + N L+ V VK
Sbjct: 236 LGGGLGIPYRENNEPPPDPQAYAAIIKRHTKDLGLKLVFEMGRLIAGNAGVLIARVIYVK 295
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
K F+++D +M +LIRP+LY+A+ I+ V+ A D DVVGPVCE+ D+L
Sbjct: 296 QGADKPFVIVDAAMNDLIRPTLYEAHHDIKPVTEASPDTPRIVADVVGPVCETGDYLALS 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R++P G + + AGAY ASTYN + PE VR ++ P
Sbjct: 356 RDMPEVKAGDLIAIMTAGAYGAVQASTYNTRRLVPEVLVRGEEHAVVRP 404
>gi|384085284|ref|ZP_09996459.1| diaminopimelate decarboxylase [Acidithiobacillus thiooxidans ATCC
19377]
Length = 411
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 217/390 (55%), Gaps = 13/390 (3%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G LYCED+ + + + P Y+YS + ++ AL G + + YA+KAN+N +
Sbjct: 9 GDLYCEDLSLATLARHYDT-PCYVYSGAALRERYHSFSNAL-GDGTQVCYAVKANSNLAV 66
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L ++G G +VSG EL LRAG K IF+G GK +++ A G+ +NV+S
Sbjct: 67 LRLFAEMGAGFDIVSGGELERVLRAGGAAEKIIFSGVGKSADEIRAALSAGIACLNVESA 126
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ-WFLDAVK 250
+L I + G + + LR+NPDVDP H Y+ATG K SKFGI + + +L+A K
Sbjct: 127 AELWRIADIAADMGLRAPIALRVNPDVDPGTHAYIATGLKESKFGIPMDAARTLYLEAAK 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
HP L+L G CH+GS + + +A + + + AQG +++L++GGG+GI Y+
Sbjct: 187 -HP-ALELKGIACHIGSQLLNLAPLGEAVTRVRALYEDLSAQGLTLEHLDLGGGVGIRYH 244
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + + + + + + +E GR+L+ N L+ V +K NG+K F V+
Sbjct: 245 DENP--PSPADYAEVLNQALQGLAVKRAVELGRALVGNAGVLLTRVEYLKDNGSKQFCVV 302
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLGKERELPTPDRG 429
D +M +L+RP+LY A+ I P QDA + DVVGP+CES DF+ K R + + G
Sbjct: 303 DAAMNDLLRPALYGAWHDI---LPLRQDAAAGQVMDVVGPICESGDFIAKNRPV-RAEAG 358
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + AGAY +M+S YN + RPPE V
Sbjct: 359 QLLAIMGAGAYGFAMSSNYNTRPRPPEVLV 388
>gi|126740531|ref|ZP_01756218.1| diaminopimelate decarboxylase [Roseobacter sp. SK209-2-6]
gi|126718332|gb|EBA15047.1| diaminopimelate decarboxylase [Roseobacter sp. SK209-2-6]
Length = 421
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 214/392 (54%), Gaps = 5/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG LY EDV V ++ V PFY+YS + R+ + +ALEG ++ YA+KA +N
Sbjct: 8 DGALYAEDVPVAEIAAAV-GTPFYVYSTATLLRHFRLFDEALEGTEHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VS E A AG + +F+G GK +E++ +A G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSQGEYLRAKAAGVPGDRIVFSGVGKTMEEVRVALSGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ I + G + +RINPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMAVINAVALELGVIAPITIRINPDVDAKTHAKIATGKSENKFGIPISRAKEVYAHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L++VG CH+GS +T ++ FR A + + +RA+G ++ L++GGGLGI Y
Sbjct: 187 SLPG-LEVVGIDCHIGSQLTDLEPFRLAYEKVAELTEVLRAEGHDIRRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P +++ + + IEPGR + N +V+ V VK+ ++F+++
Sbjct: 246 RSNEAPPLPVEYGQLIKDTLGHLGCEIEIEPGRLIAGNAGLMVSKVIYVKSGEGRDFLIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+A+ I V PAP E +D+VGPVCE+ D KER +P G
Sbjct: 306 DGAMNDLIRPAMYEAHHDIVAVDEPAP-GVEQQPYDIVGPVCETGDTFAKERMMPPLAAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE V
Sbjct: 365 DLIAFRSAGAYGAVMASEYNSRPLIPEVLVHG 396
>gi|372278903|ref|ZP_09514939.1| diaminopimelate decarboxylase [Oceanicola sp. S124]
Length = 421
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 213/392 (54%), Gaps = 5/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ V P Y+YS +TR+ + +AL G++ ++ YA+KA +N
Sbjct: 8 DGMLHAEDVPLSEIAAEV-GTPCYVYSTATLTRHFRLFDEALSGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ + LG G +VSG E A+ AG K +F+G GK E++ A + GV N++S
Sbjct: 67 ILKLMASLGAGMDVVSGGEYARAIAAGVPGDKIVFSGVGKTREEMTAALKGGVRQFNLES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E + + G V +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEALNEVALSLGVVAPVTVRVNPDVDAKTHAKIATGKSENKFGIPISRAPEVYGRI- 185
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A LK VG H+GS +T ++ +R A + +R QG ++ L++GGGLGI Y
Sbjct: 186 AQMKGLKAVGIDVHIGSQLTDLEPYRQAFTKVKELTQVLRDQGHDIIRLDLGGGLGIPYD 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P VRE++ + IEPGR + N +++ V VK +NF+++
Sbjct: 246 RGNSAPPLPVEYGALVREVLGDTGCEIEIEPGRLIAGNAGIMLSKVIYVKEGEGRNFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+A+ I LV PAP AE S +D+VGPVCE+ D K R +P
Sbjct: 306 DGAMNDLIRPAMYEAHHDIVPLVEPAP-GAEQSPYDIVGPVCETGDTFAKGRNMPVLKAD 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE V
Sbjct: 365 DLVAFRSAGAYGAVMASEYNTRPLIPEVLVHG 396
>gi|359436236|ref|ZP_09226354.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20311]
gi|358029096|dbj|GAA62603.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20311]
Length = 417
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVATIAQHY-GTPCYVYSRATFERHYLAFANAAKDHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGAGFDIVSKGELARVIKAGGAANKVVFSGVAKTADEIAYALELGIKCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI E + P
Sbjct: 130 LERISEVACELNLDAPISIRVNPDIDAKTHPYISTGLKENKFGIGIESALSVYQHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L +VG CH+GS +T+ F +A ++ ID+++ G E+ +L+IGGGLG+ Y
Sbjct: 190 G-LTIVGVDCHIGSQLTQTKPFLEALEKLLALIDELKNAGIELSHLDIGGGLGVTY--DD 246
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V + L R+L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 247 EQPPHPSEYAAQVTQRLANYRHLELIFEPGRAIAANAGILVTQVEFIKQNQDKYFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS + +DVVGPVCE+ DFLGK+R L +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDETPTHNYDVVGPVCETGDFLGKDRPLAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN + R E V
Sbjct: 366 VQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|315635221|ref|ZP_07890498.1| diaminopimelate decarboxylase [Aggregatibacter segnis ATCC 33393]
gi|315475967|gb|EFU66722.1| diaminopimelate decarboxylase [Aggregatibacter segnis ATCC 33393]
Length = 416
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 221/396 (55%), Gaps = 10/396 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + L E++ V+ + E P Y+YS+ + R+ A+ A ++ +A+K+
Sbjct: 3 FFQYKNNQLMAENLPVKQLAEQF-GTPLYVYSRATLERHWHAFNNAFGEHPHLVCFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N N IL + KLG G +VS EL L AG D K +F+G K +++ A + +
Sbjct: 62 NPNIAILNIMAKLGSGFDIVSQGELERVLAAGGDAAKVVFSGVAKSRQEIARALEVNIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ +
Sbjct: 122 FNVESEAELLRINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+VG CH+GS +T++ F DA ++ ++++ G + +L++GGGL
Sbjct: 182 YKLAATLPN-IKIVGMDCHIGSQLTELQPFLDAVDRLIVLMEQLNQDGIHLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + E L L +I+EPGR++ AN LV V +K+N +
Sbjct: 241 GVTY--TDETPPHPTEYAKALWEKLSAFSELEIIVEPGRAITANAGILVTKVEYLKSNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
+NF + D M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L
Sbjct: 299 RNFAIADAGMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L AGAY SM+S YN + R E V
Sbjct: 357 AIAE-GDYLAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|163851214|ref|YP_001639257.1| diaminopimelate decarboxylase [Methylobacterium extorquens PA1]
gi|163662819|gb|ABY30186.1| diaminopimelate decarboxylase [Methylobacterium extorquens PA1]
Length = 422
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 145/407 (35%), Positives = 212/407 (52%), Gaps = 6/407 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + DG L+ EDV + + E V PFY YS + R+ + +A G ++++ +A+
Sbjct: 2 HHFHYR-DGRLHAEDVDLTALAEEVGT-PFYCYSTATLERHYRVFAEAFAGDDALVCFAM 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L G G +VS ELR AL AG + +F+G GK E++ A +
Sbjct: 60 KANSNQAVLATLAHQGAGMDIVSEGELRRALAAGVPGERIVFSGVGKTREEMAAALDANI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +L + + G+K V +R+NPDVD H ++TG ++KFGI + +
Sbjct: 120 LCFNVESEPELAALSEVAVARGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
P L++VG H+GS IT + F +AA L+ + A G + +++ GG
Sbjct: 180 AVYAGAARLPG-LEIVGVDAHIGSQITDLTPFDNAARLLCELARDLLADGHRLHHVDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y A P P L +R L + E GR + N LV V VK
Sbjct: 239 GLGIPYRDDNAPPPDPTALAAILRPHFKPLGLRPVFEIGRMIAGNAGILVTRVIYVKPTD 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERE 422
K F+++DG+M +LIRP+LY+A+ + V PAP ++ DVVGPVCES D+L RE
Sbjct: 299 EKTFVIVDGAMNDLIRPTLYEAFHALRPVREPAPDTPRLTA-DVVGPVCESGDYLALGRE 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G + V AGAY A TYN + PE V S ++ P
Sbjct: 358 MPMVAPGDLIAVMSAGAYGAVQACTYNSRRLVPEVLVTGDRSAVVRP 404
>gi|359447459|ref|ZP_09237055.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20439]
gi|358038740|dbj|GAA73304.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. BSi20439]
Length = 417
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 212/387 (54%), Gaps = 7/387 (1%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+ EDV V + + P Y+YS+ R+ A+ A + S++ YA+KAN+N +L
Sbjct: 11 LFAEDVSVATIAQHY-GTPCYVYSRATFERHYLAFANAAKDHKSLVCYAVKANSNIAVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
L +LG G +VS EL ++AG K +F+G K +++ A + G+ NV+S +
Sbjct: 70 ILARLGAGFDIVSKGELARVIKAGGAANKVVFSGVAKTADEIAYALELGIKCFNVESISE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
LE I + + +R+NPD+D + HPY++TG K +KFGI E + P
Sbjct: 130 LERISEVACELNLDAPISIRVNPDIDAKTHPYISTGLKENKFGIGIESALSVYQHAASLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
L +VG CH+GS +T+ F +A ++ ID+++ G E+ +L+IGGGLG+ Y
Sbjct: 190 G-LTIVGVDCHIGSQLTQTKPFLEALEKLLALIDELKNAGIELSHLDIGGGLGVTYDDEH 248
Query: 314 AVLPKPRNLIDTV-RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P V + L R+L LI EPGR++ AN LV V +K N K F ++D
Sbjct: 249 P--PHPSEYAAQVTQRLANYRHLELIFEPGRAIAANAGILVTQVEFIKQNQDKYFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M +++RPSLY A+Q I VS + +DVVGPVCE+ DFLGK+R L +G L
Sbjct: 307 GMNDMLRPSLYQAWQKIIPVSVRDDETPTHNYDVVGPVCETGDFLGKDRPLAL-KQGDLL 365
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWV 459
V AGAY +M+S YN + R E V
Sbjct: 366 VQRSAGAYGFTMSSNYNSRPRVAEIMV 392
>gi|337278422|ref|YP_004617893.1| Diaminopimelate decarboxylase [Ramlibacter tataouinensis TTB310]
gi|334729498|gb|AEG91874.1| Candidate Diaminopimelate decarboxylase [Ramlibacter tataouinensis
TTB310]
Length = 423
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 152/400 (38%), Positives = 232/400 (58%), Gaps = 13/400 (3%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H + + DG L+ E + + + P ++YSK + + AY++ G + I YA+
Sbjct: 7 HPYVHRQDGELWIEQLPLA-ALARQHGTPLFVYSKAAMLAALAAYQRGFAGRQATICYAM 65
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN++ +L+ + GCG +VSG EL L AG P+K IF+G GK ++ A + G+
Sbjct: 66 KANSSLAVLQLFARAGCGFDIVSGGELERVLAAGALPSKVIFSGVGKTRAEMRRALEVGI 125
Query: 185 -FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-L 242
NV+SE +LE + + AG +V +R+NP+VD + HPY++TG K++KFG+ +E+ L
Sbjct: 126 GCFNVESEAELEELSRVASAAGVAASVSIRVNPNVDARTHPYISTGLKDNKFGVAHERTL 185
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ AV+ P LK+VG CH+GS IT + DA +++ ++ + A G + +++ G
Sbjct: 186 HAYRRAVEL-PG-LKVVGIDCHIGSQITDGAPYLDAMDRVLDLVEAVEAAGIPLAHIDFG 243
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGV 359
GGLGIDY G P L + + +R +L+IEPGRSL+ N + V +
Sbjct: 244 GGLGIDY--NGDRPPAADTLWAQLLAKLDARGHGGRHLMIEPGRSLVGNAGVCLTEVLYL 301
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
K KNF ++D +M +L RP++Y A+ IE V P +A+ ++DVVGPVCES D+LG+
Sbjct: 302 KPGEHKNFCIVDAAMNDLPRPAMYQAFHRIEPVRPTRGNAQ--RYDVVGPVCESGDWLGR 359
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+REL G L V AGAYCMSMAS YN + R E V
Sbjct: 360 DRELAVRS-GDLLAVLSAGAYCMSMASNYNTRGRAAEVLV 398
>gi|421664097|ref|ZP_16104237.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC110]
gi|408712394|gb|EKL57577.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC110]
Length = 416
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTKHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|169632675|ref|YP_001706411.1| diaminopimelate decarboxylase [Acinetobacter baumannii SDF]
gi|169795020|ref|YP_001712813.1| diaminopimelate decarboxylase [Acinetobacter baumannii AYE]
gi|184159195|ref|YP_001847534.1| diaminopimelate decarboxylase [Acinetobacter baumannii ACICU]
gi|213158317|ref|YP_002320368.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB0057]
gi|215482568|ref|YP_002324760.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB307-0294]
gi|301345397|ref|ZP_07226138.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB056]
gi|301511589|ref|ZP_07236826.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB058]
gi|301594791|ref|ZP_07239799.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB059]
gi|332854282|ref|ZP_08435282.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013150]
gi|332865658|ref|ZP_08436484.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013113]
gi|332876024|ref|ZP_08443810.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6014059]
gi|384132889|ref|YP_005515501.1| lysA [Acinetobacter baumannii 1656-2]
gi|384144306|ref|YP_005527016.1| diaminopimelate decarboxylase [Acinetobacter baumannii MDR-ZJ06]
gi|387122876|ref|YP_006288758.1| diaminopimelate decarboxylase [Acinetobacter baumannii MDR-TJ]
gi|407933783|ref|YP_006849426.1| diaminopimelate decarboxylase [Acinetobacter baumannii TYTH-1]
gi|416145138|ref|ZP_11600255.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB210]
gi|417569577|ref|ZP_12220435.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC189]
gi|417573732|ref|ZP_12224586.1| diaminopimelate decarboxylase [Acinetobacter baumannii Canada BC-5]
gi|417575754|ref|ZP_12226602.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-17]
gi|417870432|ref|ZP_12515398.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH1]
gi|417874473|ref|ZP_12519325.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH2]
gi|417877515|ref|ZP_12522211.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH3]
gi|417881254|ref|ZP_12525592.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH4]
gi|421203635|ref|ZP_15660772.1| diaminopimelate decarboxylase [Acinetobacter baumannii AC12]
gi|421533599|ref|ZP_15979882.1| diaminopimelate decarboxylase [Acinetobacter baumannii AC30]
gi|421623223|ref|ZP_16064112.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC074]
gi|421628201|ref|ZP_16068986.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC180]
gi|421645142|ref|ZP_16085614.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-235]
gi|421647359|ref|ZP_16087776.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-251]
gi|421658218|ref|ZP_16098453.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-83]
gi|421673300|ref|ZP_16113244.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC065]
gi|421688893|ref|ZP_16128582.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-143]
gi|421689902|ref|ZP_16129575.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-116]
gi|421700610|ref|ZP_16140123.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-58]
gi|421704464|ref|ZP_16143909.1| diaminopimelate decarboxylase [Acinetobacter baumannii ZWS1122]
gi|421708242|ref|ZP_16147621.1| diaminopimelate decarboxylase [Acinetobacter baumannii ZWS1219]
gi|421786528|ref|ZP_16222926.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-82]
gi|421791314|ref|ZP_16227491.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-2]
gi|421794886|ref|ZP_16230977.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-21]
gi|421802139|ref|ZP_16238093.1| diaminopimelate decarboxylase [Acinetobacter baumannii Canada BC1]
gi|421806926|ref|ZP_16242788.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC035]
gi|424051373|ref|ZP_17788905.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab11111]
gi|424062412|ref|ZP_17799898.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab44444]
gi|425754434|ref|ZP_18872296.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-113]
gi|445405946|ref|ZP_21431541.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-57]
gi|445454699|ref|ZP_21445491.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-A-92]
gi|445472483|ref|ZP_21452562.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC338]
gi|445477235|ref|ZP_21454210.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-78]
gi|169147947|emb|CAM85810.1| diaminopimelate decarboxylase [Acinetobacter baumannii AYE]
gi|169151467|emb|CAP00216.1| diaminopimelate decarboxylase [Acinetobacter baumannii]
gi|183210789|gb|ACC58187.1| Diaminopimelate decarboxylase [Acinetobacter baumannii ACICU]
gi|193078108|gb|ABO13049.2| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 17978]
gi|213057477|gb|ACJ42379.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB0057]
gi|213986285|gb|ACJ56584.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB307-0294]
gi|322509109|gb|ADX04563.1| lysA [Acinetobacter baumannii 1656-2]
gi|332728098|gb|EGJ59487.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013150]
gi|332735179|gb|EGJ66259.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013113]
gi|332735890|gb|EGJ66931.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6014059]
gi|333367254|gb|EGK49268.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB210]
gi|342228119|gb|EGT93024.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH1]
gi|342228871|gb|EGT93747.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH2]
gi|342235469|gb|EGU00067.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH3]
gi|342239092|gb|EGU03506.1| diaminopimelate decarboxylase [Acinetobacter baumannii ABNIH4]
gi|347594799|gb|AEP07520.1| diaminopimelate decarboxylase [Acinetobacter baumannii MDR-ZJ06]
gi|385877368|gb|AFI94463.1| diaminopimelate decarboxylase [Acinetobacter baumannii MDR-TJ]
gi|395553800|gb|EJG19806.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC189]
gi|395571243|gb|EJG31902.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-17]
gi|398327009|gb|EJN43150.1| diaminopimelate decarboxylase [Acinetobacter baumannii AC12]
gi|400209300|gb|EJO40270.1| diaminopimelate decarboxylase [Acinetobacter baumannii Canada BC-5]
gi|404559256|gb|EKA64520.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-143]
gi|404565406|gb|EKA70574.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-116]
gi|404569261|gb|EKA74348.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-58]
gi|404664929|gb|EKB32892.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab11111]
gi|404671364|gb|EKB39207.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab44444]
gi|407190298|gb|EKE61517.1| diaminopimelate decarboxylase [Acinetobacter baumannii ZWS1122]
gi|407190855|gb|EKE62070.1| diaminopimelate decarboxylase [Acinetobacter baumannii ZWS1219]
gi|407902364|gb|AFU39195.1| diaminopimelate decarboxylase [Acinetobacter baumannii TYTH-1]
gi|408503564|gb|EKK05324.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-235]
gi|408516464|gb|EKK18037.1| diaminopimelate decarboxylase [Acinetobacter baumannii IS-251]
gi|408693832|gb|EKL39430.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC074]
gi|408708240|gb|EKL53517.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC180]
gi|408710168|gb|EKL55402.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-83]
gi|409988599|gb|EKO44769.1| diaminopimelate decarboxylase [Acinetobacter baumannii AC30]
gi|410387119|gb|EKP39579.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC065]
gi|410402823|gb|EKP54928.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-21]
gi|410403351|gb|EKP55448.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-2]
gi|410404527|gb|EKP56594.1| diaminopimelate decarboxylase [Acinetobacter baumannii Canada BC1]
gi|410412030|gb|EKP63891.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-82]
gi|410417469|gb|EKP69239.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC035]
gi|425496930|gb|EKU63044.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-113]
gi|444752316|gb|ELW77003.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-A-92]
gi|444770148|gb|ELW94306.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC338]
gi|444776742|gb|ELX00780.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-78]
gi|444781724|gb|ELX05639.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-57]
Length = 416
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|78486188|ref|YP_392113.1| diaminopimelate decarboxylase [Thiomicrospira crunogena XCL-2]
gi|78364474|gb|ABB42439.1| diaminopimelate decarboxylase [Thiomicrospira crunogena XCL-2]
Length = 418
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 209/369 (56%), Gaps = 8/369 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YS+ + QA ++ YA+K N+N IL L +LG G +VS EL
Sbjct: 31 PLYVYSRQAFEDRWREFDQAFGRQPHLVCYAVKTNSNIAILNLLARLGSGFDIVSQGELE 90
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVL 211
LRAG DP+K +F+G K ++ A G+ NV+S +L+ I ++ K +
Sbjct: 91 RVLRAGGDPSKVVFSGVAKKSSEIERALTVGIRCFNVESHAELDRIQAVAKKLNKIAPIS 150
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
+R+NPDVD + HPY++TG K++KFG+ N + DA + + ++G CH+GS +T
Sbjct: 151 IRVNPDVDAKTHPYISTGLKDNKFGVDINTAPALYADAQAL--SHIDIIGIDCHIGSQLT 208
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
++ F DA ++ + QG + +L++GGGLGI Y T P+ + I + + +
Sbjct: 209 EITPFVDALDRVLELKKTLTDQGINIHHLDLGGGLGIQY--TDETPPEIADYIQALMKKL 266
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
++ +IIEPGR++ N LV V +K KNF +ID +M +LIRP+LY ++Q I+
Sbjct: 267 DDPSIEVIIEPGRAIAGNAGVLVTEVEYLKPTEHKNFAIIDAAMNDLIRPALYQSHQTIQ 326
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
V+P D E ++D+VGPVCE+ DFLGK+R+L G L V +GAY +M+S YN
Sbjct: 327 PVTPR-TDGEDVEWDLVGPVCETGDFLGKQRKL-NLKAGDYLAVMSSGAYGFTMSSNYNT 384
Query: 451 KMRPPEYWV 459
+ R E V
Sbjct: 385 RTRAAEILV 393
>gi|386000834|ref|YP_005919133.1| diaminopimelate decarboxylase [Methanosaeta harundinacea 6Ac]
gi|357208890|gb|AET63510.1| Diaminopimelate decarboxylase [Methanosaeta harundinacea 6Ac]
Length = 427
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 213/398 (53%), Gaps = 23/398 (5%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L + V V D+ E P Y+ S+ ++ N AY++A ++I +A+KAN N +
Sbjct: 13 GHLTIDGVDVVDLAEEF-GTPLYVTSEARLRANARAYREAFP--EALIYFAVKANGNLAL 69
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEF 192
L L + G GA + S EL L AG K +FNGN K E+L +A + GV ++ DS
Sbjct: 70 LRILAEEGLGADVFSAGELSLVRMAGIPGEKVLFNGNSKRTEELKMALEAGVRISADSLD 129
Query: 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
+L + ++ G++ V R+NPDV + HP +ATG K SKFGI W D V+ +
Sbjct: 130 ELLALAEVAKEMGEEAEVAFRVNPDVSAKTHPKIATGLKTSKFGI-----PW-QDLVEVY 183
Query: 253 PNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ L VG HCH+GS I F +AA M+ +I G +++ ++ GGGLGI
Sbjct: 184 ERAMGLEGVKPVGLHCHIGSQILDTAPFVEAAARMMELAGRIVEVGGKIEMMDFGGGLGI 243
Query: 308 DYYHTGAVLPKPRNLIDTVRELV------LSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y A P P L ++ + L + +I+EPGRS++A++ + V VK
Sbjct: 244 PYTPETAA-PTPSQLASGIKPVFEEGCRRLGISPRMILEPGRSIVADSTIFLTRVNVVK- 301
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
NF+ +D L RP LYDAY H+ + + A AE ++ VVGP+CES D L K+R
Sbjct: 302 RAHVNFVGVDAGFNLLARPMLYDAYHHVVVANKADGRAE-ERYTVVGPICESGDVLAKDR 360
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
LP +RG + + DAGAY SMAS YN + R PE V
Sbjct: 361 NLPRIERGDLIAMLDAGAYGFSMASVYNGQPRCPEVLV 398
>gi|30249905|ref|NP_841975.1| Orn/DAP/Arg decarboxylase family protein [Nitrosomonas europaea
ATCC 19718]
gi|30180942|emb|CAD85868.1| Orn/DAP/Arg decarboxylases family 2 [Nitrosomonas europaea ATCC
19718]
Length = 417
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 211/389 (54%), Gaps = 8/389 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D L+ E V + ++ P Y+YS I + + A + +I YA+KAN+N
Sbjct: 11 DSQLFVESVPLAEIAAKF-GTPCYVYSSAAIRTTYQIFDHAFGQRDHLICYAVKANSNLA 69
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL L +LG G +VSG EL+ L+AG DP K +F+G GK E++ A + NV+S
Sbjct: 70 ILNLLARLGSGFDIVSGGELQRVLKAGGDPQKTVFSGVGKTPEEIRAALAANILCFNVES 129
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +L + + GK V LR+NPDVD HPY++TG K +KFGI +
Sbjct: 130 EMELMVLNEIAGQMGKIAPVSLRVNPDVDANTHPYISTGMKENKFGIPAAEAGRIYSLAH 189
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P+ +++ G CH+GS +T++ F +AA M++ + +++ G + +L++GGGLGI Y
Sbjct: 190 QLPH-IQVSGLDCHIGSQLTEIAPFIEAADKMLDLLARLQTMGVTIKHLDLGGGLGIRYD 248
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P I + + + L+IEPGRS++ N L+ V +K +NF ++
Sbjct: 249 RESP--PSIEAYIKALCTIAENHPQQLLIEPGRSMVGNAGLLLTRVHYLKHTSHRNFAIV 306
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +++RP+LY AY I V+ + E + +VGPVCE+ DFLG +R L +
Sbjct: 307 DAAMNDMLRPALYQAYHSILPVT--KRTGETKTYQIVGPVCETGDFLGHDRNLAL-TKND 363
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY MSM+S YN + R E V
Sbjct: 364 LLAVMSAGAYGMSMSSNYNTRPRAAEVMV 392
>gi|377821854|ref|YP_004978225.1| diaminopimelate decarboxylase [Burkholderia sp. YI23]
gi|357936689|gb|AET90248.1| diaminopimelate decarboxylase [Burkholderia sp. YI23]
Length = 420
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 212/392 (54%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +TR AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAASLAEQF-GTPLYVYSRDALTRAYHAYADACAGRKATVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L ++G G +VS EL L AG +F+G GK ++ A + GV NV+S
Sbjct: 69 VLNVFARMGAGFDIVSSGELARVLAAGGKAENTVFSGVGKTAAEMREALEAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L + + GKK V LR+NPDVD + HPY++TG K++KFG+ +
Sbjct: 129 IPELHALNEVATSLGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFGDARATYREAH 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L +VG CH+GS IT++ + DA ++ +++I A G + ++++GGGLGI Y
Sbjct: 189 AMPN-LDVVGIDCHIGSQITEISPYLDAVDKLLELVEQIEADGMRIRHVDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSRN---LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + T+ + + R + EPGRSL+ N L+ V +K KNF
Sbjct: 247 -DDETPPDIGVFVKTLLDHIEQRGHGEREVYFEPGRSLVGNAGVLLTRVEFLKPGEEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+A+ I V ++A K+DVVGPVCES D+LG++REL +
Sbjct: 306 AIVDAAMNDLARPAMYEAFHRI--VPVEKRNATAHKYDVVGPVCESGDWLGRDRELAI-E 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+S YN + R E V
Sbjct: 363 PGDLLAICSAGAYGFVMSSNYNTRPRAAEIMV 394
>gi|32267006|ref|NP_861038.1| diaminopimelate decarboxylase [Helicobacter hepaticus ATCC 51449]
gi|32263058|gb|AAP78104.1| diaminopimelate decarboxylase [Helicobacter hepaticus ATCC 51449]
Length = 424
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 207/370 (55%), Gaps = 7/370 (1%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
+ P Y+Y +IT+ A K A + S+I YA+KAN+N I+ HL +LG GA VS E
Sbjct: 14 QTPLYVYDLERITQAFCAIKDAFKARKSLICYALKANSNLSIIHHLAQLGSGADCVSIGE 73
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
+R ALRAG K IF+G GK ++ A Q + F+NV+SE +L I ++ K
Sbjct: 74 VRRALRAGIPKYKIIFSGVGKQDNEIEEALQSDILFLNVESEEELLRIESIAKKLDKIAR 133
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
+ +R+NP++D + HPY++TG +KFG+ E+ + K + L+ +G H H+GS I
Sbjct: 134 ISVRVNPNIDAKTHPYISTGLNENKFGVDIEQAKSMYIFAK-NAQFLEPIGIHFHIGSQI 192
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
T ++ + +A + + A ++ + +IGGG+GI Y T L P + + E
Sbjct: 193 TDLEPIKQSAQKIAQLTHSLLALKIDLKFFDIGGGIGIRY--TDESLINPYDYAQAILEA 250
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
+ +L +I EPGR L+ + L+ V K NG K F+++D +M +L+RP+LY A +
Sbjct: 251 LYGLDLTIICEPGRFLVGESGVLLTRVLYEKHNGHKRFVIVDAAMNDLMRPALYRATHQV 310
Query: 390 ELV---SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446
E E S D+VGP+CES+D+L K +LP G LV+ +AGAY SMAS
Sbjct: 311 EYFLKDKRVDSSLESSLCDIVGPICESSDYLAKNIKLPPLQAGDVLVLKNAGAYGYSMAS 370
Query: 447 TYNLKMRPPE 456
YN + RP E
Sbjct: 371 NYNTRPRPAE 380
>gi|350545432|ref|ZP_08914916.1| Diaminopimelate decarboxylase [Candidatus Burkholderia kirkii
UZHbot1]
gi|350526803|emb|CCD39578.1| Diaminopimelate decarboxylase [Candidatus Burkholderia kirkii
UZHbot1]
Length = 420
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/392 (34%), Positives = 215/392 (54%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + E P Y+YS+ +TR AY A G + + A+KAN+N
Sbjct: 10 EGVLHTEGVSAASLAEQF-GTPLYVYSRDALTRAYHAYADACAGRKAAVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L ++G G +VS E L AG +F+G GK ++ A + GV NV+S
Sbjct: 69 VLNVFARMGAGFDIVSSGEFARVLAAGGRAENTVFSGVGKSAAEMREALEAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L + ++ G+K V LR+NPDVD + HPY++TG K++KFG+ +
Sbjct: 129 IPELHALNEVAKSLGRKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFADARATYAQAH 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L++VG CH+GS IT++ + DA ++ +++I + G + ++++GGGLGI Y
Sbjct: 189 AMPN-LEVVGIGCHIGSQITEISPYLDAIDKLLELVEQIESDGMSIRHVDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + + T+ + + R + EPGRSL+ N L+ H+ +K KNF
Sbjct: 247 -DDETPPDIGDFVKTLLDHIEKRGHGQREVYFEPGRSLVGNAGVLLTHIEYLKPGEEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+A+ I V +DA+ +D+VGPVCES D+LG++REL +
Sbjct: 306 AIVDAAMNDLARPAMYEAFHRI--VPVVKRDAQAHNYDIVGPVCESGDWLGRDRELAV-E 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G LV+ AGAY +S YN + R E V
Sbjct: 363 PGDLLVICSAGAYGFVTSSNYNTRARAAEVIV 394
>gi|333368357|ref|ZP_08460563.1| diaminopimelate decarboxylase [Psychrobacter sp. 1501(2011)]
gi|332977415|gb|EGK14192.1| diaminopimelate decarboxylase [Psychrobacter sp. 1501(2011)]
Length = 447
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 145/405 (35%), Positives = 219/405 (54%), Gaps = 35/405 (8%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L E V Q ++E P Y+YSK I +AY + ++ + YA+KAN+N +
Sbjct: 37 GVLSIEAVSAQQLVEQY-GTPLYVYSKKAILEAYQAYSDSFAEIDHQVCYAVKANSNLAV 95
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSE 191
L+ L + G G LVS EL L G DP K +F+G GK + ++ A Q G+ NV+S
Sbjct: 96 LKVLAEAGAGFDLVSSGELARVLAVGADPKKIVFSGVGKTVSEMKAALQAGIGCFNVESL 155
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+L+ + + K + +R+NPDVD + HPY++TG K++KFGI ++ AV+A
Sbjct: 156 SELDRLNEVAAEMQVKAPISIRVNPDVDAKTHPYISTGLKDNKFGISHDV------AVEA 209
Query: 252 --HPNE---LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
H N L++VG CH+GS +T++D F A + ID ++ G E++++++GGGLG
Sbjct: 210 YKHANSLANLQIVGIDCHIGSQLTEIDPFVAALDKVCELIDALKQAGIELEHIDLGGGLG 269
Query: 307 IDYYH---------TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVT 357
+ Y A+LPK + L L + EPGRS++AN L+ V
Sbjct: 270 VIYIDEQVAEVSEFANALLPKLKQL-----------GLKVFFEPGRSIVANAGVLLTQVE 318
Query: 358 GVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADF 416
+K KNF ++D +M +LIRP+LY A + V+ PQ + +D+VG VCE+ DF
Sbjct: 319 VLKPTEHKNFAIVDAAMNDLIRPALYQAEMAVIPVNSQPQSQTQEQSWDIVGAVCETGDF 378
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L K+R L G L + AGAY M+S YN + RP E V +
Sbjct: 379 LAKKRLLSLA-VGEVLAITGAGAYGFVMSSNYNSRPRPAEVMVSA 422
>gi|254464493|ref|ZP_05077904.1| diaminopimelate decarboxylase [Rhodobacterales bacterium Y4I]
gi|206685401|gb|EDZ45883.1| diaminopimelate decarboxylase [Rhodobacterales bacterium Y4I]
Length = 421
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 212/389 (54%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + ++ V PFY+YS + R+ + +ALEG + ++ +A+KA +N
Sbjct: 8 DGALFAEDVPLSEIAAAV-GTPFYVYSTATLLRHFRLFDEALEGTDHLVCFAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L + G G +VS E A AG + +F+G GK E++ +A G+ NV+S
Sbjct: 67 ILKTLAQAGAGMDVVSQGEYLRARAAGVPGDRIVFSGVGKTAEEIRVALTGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E I + G K + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEVISAVAEELGAKAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L++VG H+GS +T ++ FR A + + +RA G ++ L++GGGLGI Y
Sbjct: 187 ALPG-LEVVGIDVHIGSQLTDLEPFRLAYQKVAELTETLRADGHDIRRLDLGGGLGIPYE 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ + P P V+E + + IEPGR + N LV+ V VK+ ++F+++
Sbjct: 246 RSNSAPPLPVEYGAMVKETLGHLGCEIEIEPGRLIAGNAGQLVSKVIYVKSGEGRDFVIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP++Y+A+ I V E +D+VGPVCE+ D K+R+LP G
Sbjct: 306 DAAMNDLIRPAMYEAHHDIIPVQEPEAGTESRPYDIVGPVCETGDTFAKQRDLPPLAAGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 366 LVSFRSAGAYGAVMASEYNSRPLIPEVLV 394
>gi|307352865|ref|YP_003893916.1| diaminopimelate decarboxylase [Methanoplanus petrolearius DSM
11571]
gi|307156098|gb|ADN35478.1| diaminopimelate decarboxylase [Methanoplanus petrolearius DSM
11571]
Length = 431
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 151/399 (37%), Positives = 211/399 (52%), Gaps = 16/399 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL-EGLNSI-IGYAIKANNN 129
+G LY D+ E P Y+ + +I +N Y AL E N + + YA KAN N
Sbjct: 11 NGHLYIGQHDTVDLAEQY-GTPCYVSDEERIRQNFLRYNSALREYYNDVQLLYAAKANGN 69
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVD 189
++ L K+G GA + S EL LAL AG P K +FNG+ K EDL LA +GV V++D
Sbjct: 70 LSVMRVLAKMGAGADVFSSGELHLALLAGMPPEKLLFNGSSKTTEDLELAVDKGVRVSLD 129
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
S +L + ++ GK+V V RINP ++ HP +ATG SKFGI ++ LDA
Sbjct: 130 SFDELRQLSEVAKRKGKEVEVSFRINPALEVPTHPKIATGLATSKFGIPAGQI---LDAY 186
Query: 250 KA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
KA + + VG HCH+GS I V F AA +MV+ KI G + +++IGGGLGI
Sbjct: 187 KAAMEADNVTPVGMHCHIGSQILDVAPFGKAAEVMVDLAGKITDLGVRLAFIDIGGGLGI 246
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSR------NLNLIIEPGRSLIANTCCLVNHVTGVKT 361
Y +P P V + L L +EPGR L+ ++ L+ V VK
Sbjct: 247 PYNRETDKMPTPEEYAKAVMPVFLKGIEKLGIKAQLWVEPGRYLVGDSTILLTKVNSVK- 305
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
KNF+ +D LIRP++YDAY + +V+ +A + + V GP+CE+ D L +R
Sbjct: 306 KAHKNFVNVDAGFNLLIRPAMYDAYHEV-VVANRADEAPVETYTVTGPICETGDILAADR 364
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
+LP + V DAGAY SMAS YN + R E V+
Sbjct: 365 KLPVVADSDIMAVLDAGAYGYSMASQYNSRPRCMEVMVK 403
>gi|358639207|dbj|BAL26504.1| diaminopimelate decarboxylase [Azoarcus sp. KH32C]
Length = 420
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/394 (35%), Positives = 217/394 (55%), Gaps = 8/394 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E V + D+ + P Y+YS+ +T AY+ AL G S++ YA+KAN++ +L
Sbjct: 17 LQLEGVPLADIAQA-HGTPTYVYSRKALTDAFVAYRGALAGRRSLVCYAVKANSSLGVLS 75
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+LG G +VSG EL L AG D K +F+G GK ++ A + NV+S +
Sbjct: 76 VFAQLGAGFDIVSGGELSRVLAAGGDAGKVVFSGVGKSRAEMRQALMADIRCFNVESAAE 135
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
++ + + GK + R+NP+VDP+ HPY++TG K++KFG+ + A P
Sbjct: 136 IDRLNEVAGELGKVAPIAFRVNPNVDPKTHPYISTGLKSNKFGVAFDAALDLYRRAAALP 195
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
+ LK+ G CH+GS + +AA ++ +D++ A+G +D++++GGGLGI Y
Sbjct: 196 H-LKVSGIACHIGSQLLDPAPIAEAAEKVLGLVDRLAAEGIVLDHIDLGGGLGIRYRDEE 254
Query: 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
P + + + R L EPGRSL+ N L+ V +K KNF ++D +
Sbjct: 255 P--PSVEQYLAPLLAIFAGRKEELCFEPGRSLVGNAGLLLTRVEYLKPGEEKNFAIVDAA 312
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV 433
M +L RP+LYDAY E+V+ AP+ +++VGP+CES DFL +REL T G +
Sbjct: 313 MNDLARPALYDAYH--EVVAVAPRAEAGRNYEIVGPICESGDFLAHDREL-TVAEGDLVA 369
Query: 434 VHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ AGAY M+M+S YN + R E V +++I
Sbjct: 370 LLSAGAYGMAMSSNYNTRPRAAEVMVDGERALLI 403
>gi|390957962|ref|YP_006421719.1| diaminopimelate decarboxylase [Terriglobus roseus DSM 18391]
gi|390958302|ref|YP_006422059.1| diaminopimelate decarboxylase [Terriglobus roseus DSM 18391]
gi|390412880|gb|AFL88384.1| diaminopimelate decarboxylase [Terriglobus roseus DSM 18391]
gi|390413220|gb|AFL88724.1| diaminopimelate decarboxylase [Terriglobus roseus DSM 18391]
Length = 422
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 218/396 (55%), Gaps = 9/396 (2%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
AD L C+ V V ++ E P Y+YS QI ++ A G++ + YA+KAN++
Sbjct: 10 ADARLKCDGVDVAELAEQF-GTPLYVYSANQIAERAGLFQTAFAGVSHTVCYAVKANSSL 68
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFD--PTKCIFNGNGKLLEDLVLAAQEGVF-VN 187
IL+ L GCG +VSG EL L AG ++ +F+G GK ++ A + N
Sbjct: 69 AILKMLAAQGCGFDIVSGGELARVLAAGGRDVASRVVFSGVGKTAAEMDEALDAEILQFN 128
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
V+SE +LE + + GK+ + LR+NPDV + HPY++TG KFGI + +
Sbjct: 129 VESEPELELLAARAAAKGKRARIALRVNPDVSAETHPYISTGLSAHKFGIGIKLARAVYT 188
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
A P+ ++ G H+GS I +V+ F +A + + ++R+ G ++ Y++ GGGLGI
Sbjct: 189 RAAAMPS-IETTGVSVHIGSQIRQVEPFAEALAKTLALVAELRSDGHQIRYVDAGGGLGI 247
Query: 308 DYYHTG-AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
+Y + + ++ + S +++L++EPGR L+ L+ V K NG K
Sbjct: 248 EYADKDFDAAEQVAHYAAALKSALGSMDVHLLLEPGRFLVGQAGALITRVLYRKQNGDKK 307
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEI-SKFDVVGPVCESADFLGKERELPT 425
F+++D M +LIRP+LY A H E+V ++ + + D+VGPVCES DF + R LP
Sbjct: 308 FVIVDAGMNDLIRPALYQA--HHEIVPVVTREGSLDEEADIVGPVCESGDFFARARTLPV 365
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ G L V DAGAY +S++S YN ++RP E V S
Sbjct: 366 SEDGDLLAVLDAGAYGLSLSSNYNTRLRPAEVLVES 401
>gi|386398671|ref|ZP_10083449.1| diaminopimelate decarboxylase [Bradyrhizobium sp. WSM1253]
gi|385739297|gb|EIG59493.1| diaminopimelate decarboxylase [Bradyrhizobium sp. WSM1253]
Length = 421
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 210/399 (52%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFTDAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG GA +VSG EL+ AL AG K +F+G GK +L A + +NV+S
Sbjct: 67 VLRTLARLGAGADVVSGGELKRALAAGIPANKILFSGVGKTEAELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATETGKTARISIRVNPDVDAGTHAKISTGKSENKFGIPITHAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +RA G + +++ GGGLGI YY
Sbjct: 187 KLPG-IEVTGTDVHIGSQITDLSKMEIAFRILSEFVQTLRADGHNISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ + A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQPAKGAATIMADVVGPVCETGDYLALDRTLPTPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LIAIMTAGAYGAVQAGTYNTRPLVPEVLVKGDQYAVVRP 404
>gi|91785428|ref|YP_560634.1| diaminopimelate decarboxylase [Burkholderia xenovorans LB400]
gi|91689382|gb|ABE32582.1| diaminopimelate decarboxylase [Burkholderia xenovorans LB400]
Length = 420
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 213/394 (54%), Gaps = 15/394 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +T AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAVSLAEQF-GTPLYVYSRAALTAAWNAYAGACAGRRASVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK ++ A GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGKAENTVFSGVGKNANEMREALAAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V A GKK V LR+NPDVD + HPY++TG K++KFG+ E + A
Sbjct: 129 IPELDRLNAVAAEM--GKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
N L++VG CH+GS IT+ + DA ++ +++I G ++ ++++GGGLGI
Sbjct: 187 AAGMAN-LEVVGIDCHIGSQITEAAPYLDAVDKVLELVEQIEQDGLKIRHIDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P+ + TV + + +R + + EPGRSL+ N L+ V +K K
Sbjct: 246 Y--DDETPPEIGEFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGVLLTRVEFLKPGAEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y+AY I+ V +D +DVVGPVCES D+LG+ER L
Sbjct: 304 NFAIVDAAMNDLARPAMYEAYHAIDPV--VKRDVPAHVYDVVGPVCESGDWLGRERLLAV 361
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L + AGAY M+S YN + R E V
Sbjct: 362 -EPGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMV 394
>gi|268323184|emb|CBH36772.1| diaminopimelate decarboxylase [uncultured archaeon]
Length = 419
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 209/384 (54%), Gaps = 14/384 (3%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC 141
D +E E P Y+ + + N +Y A + + YA+KAN N IL+ L G
Sbjct: 14 DAVELAETYGTPLYVTDEDMLRNNFRSYNSAFKSADKY--YAVKANGNLAILKILASEGA 71
Query: 142 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVAS 201
GA + SG EL+L AG K +FNGN K E+L + GV V+VDS ++ + +
Sbjct: 72 GADVFSGGELQLVKSAGIPRDKILFNGNSKSEEELRAVVEAGVKVSVDSHDEMRTLSAIA 131
Query: 202 RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGA 261
K+V + +R+NPDV P+V+P +ATG + SKFGI ++ + K PN + L G
Sbjct: 132 VAMDKEVEIAIRVNPDVSPKVNPKIATGLRESKFGIPFYEVIATCEDAKMLPN-ITLTGL 190
Query: 262 HCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321
HCH+GS I V +F +A M+N ++++ A+G E++++++GGGLGI + P P +
Sbjct: 191 HCHIGSQILDVSVFSEATEKMMNLVEELYARGMELEFVDLGGGLGISHRKEEKA-PTPND 249
Query: 322 LIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMA 375
L D + R L L L++EPGRS++ L+ V VK KNF+ ID
Sbjct: 250 LADAILPTFDARLDSLGIKLKLVLEPGRSIVGPATILLCRVNTVK-QAYKNFVAIDAGFN 308
Query: 376 ELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVH 435
+RP +Y AY + + + + A + VVGPVCES D L K+R LP +RG + +
Sbjct: 309 LFMRPVMYGAYHEVVVANKLNEQASV-LCTVVGPVCESGDILAKDRMLPEVERGDLVAIL 367
Query: 436 DAGAYCMSMASTYNLKMRPPEYWV 459
+AGAY SM+S YN + R E +
Sbjct: 368 NAGAYGFSMSSQYNGRPRCAEVLI 391
>gi|385207820|ref|ZP_10034688.1| diaminopimelate decarboxylase [Burkholderia sp. Ch1-1]
gi|385180158|gb|EIF29434.1| diaminopimelate decarboxylase [Burkholderia sp. Ch1-1]
Length = 420
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 147/402 (36%), Positives = 216/402 (53%), Gaps = 15/402 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + E P Y+YS+ +T AY A G + + A+KAN+N
Sbjct: 10 NGVLHAEGVSAVSLAEQF-GTPLYVYSRAALTEAWNAYAGACAGRRASVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK ++ A GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGKAENTVFSGVGKNANEMREALAAGVKCFNVES 128
Query: 191 --EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248
E D N V A GKK V LR+NPDVD + HPY++TG K++KFG+ E + A
Sbjct: 129 IPELDRLNAVAAEM--GKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQA 186
Query: 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308
N L++VG CH+GS IT+V + DA ++ +++I G ++ ++++GGGLGI
Sbjct: 187 AAGMAN-LEVVGIDCHIGSQITEVAPYLDAVDKVLELVEQIEQDGLKIRHIDVGGGLGIT 245
Query: 309 YYHTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK 365
Y P+ + TV + + +R + + EPGRSL+ N L+ V +K K
Sbjct: 246 Y--DDETPPEIGEFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGVLLTRVEFLKPGAEK 303
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
NF ++D +M +L RP++Y+AY I+ V D +DVVGPVCES D+LG+ER L
Sbjct: 304 NFAIVDAAMNDLARPAMYEAYHAIDPV--VKHDVPAHVYDVVGPVCESGDWLGRERLLAI 361
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G L + AGAY M+S YN + R E V + +I
Sbjct: 362 -EPGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMVDGTQTHVI 402
>gi|152979892|ref|YP_001355061.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille]
gi|151279969|gb|ABR88379.1| diaminopimelate decarboxylase [Janthinobacterium sp. Marseille]
Length = 427
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 220/401 (54%), Gaps = 19/401 (4%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLN---SIIGYAIKA 126
DG L E+ + + P Y+YSK + N AY A + G N +++ Y++K+
Sbjct: 8 DGVLCAENTPLTQIARQF-GSPTYIYSKAALVENFSAYADACKQHGRNDETALVCYSVKS 66
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF- 185
N+N +L L KLG G +VSG EL L AG P K IF+G GK E++ LA +
Sbjct: 67 NSNLAVLNLLGKLGSGFDIVSGGELLRVLAAGGSPRKVIFSGVGKSREEMQLALSHDILC 126
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L + + GKK +V LR+NP+VD + HPY++TG K++KFGI E
Sbjct: 127 FNVESIPELHRLNAVAAEMGKKASVSLRVNPNVDAKTHPYISTGLKDNKFGIAYEDTLTT 186
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A PN + +VG CH+GS + +A ++ ID + A+G + +L+IGGG+
Sbjct: 187 YRVAAALPN-IDVVGIDCHIGSQLLDDAPLLEAVDKLIELIDTLDAEGIHLHHLDIGGGI 245
Query: 306 GIDYYH-----TGAVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGV 359
GI+Y + G L + ID R+ + ++ EPGRS++ N L+ V +
Sbjct: 246 GINYDNDQPVAVGDYLARLFAKIDAWRKQKHGGAPIKVLFEPGRSIVGNAGILLTEVQYI 305
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQD-AEISKFDVVGPVCESADFLG 418
K TKNF ++D +M +L+RP++Y+A+ V P Q A + +DVVGPVCES D+L
Sbjct: 306 KHGETKNFAIVDAAMNDLMRPAMYEAWHG---VLPVKQSTAAAATYDVVGPVCESGDWLA 362
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ REL + G L + AGAY M+M+S YN + R E V
Sbjct: 363 RSRELAI-EEGDLLAIMSAGAYGMTMSSNYNTRGRAAEVMV 402
>gi|417550790|ref|ZP_12201869.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-18]
gi|417565207|ref|ZP_12216081.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC143]
gi|424058954|ref|ZP_17796445.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab33333]
gi|445490475|ref|ZP_21459188.1| diaminopimelate decarboxylase [Acinetobacter baumannii AA-014]
gi|395556963|gb|EJG22964.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC143]
gi|400386615|gb|EJP49689.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-18]
gi|404669692|gb|EKB37584.1| diaminopimelate decarboxylase [Acinetobacter baumannii Ab33333]
gi|444765738|gb|ELW90027.1| diaminopimelate decarboxylase [Acinetobacter baumannii AA-014]
Length = 416
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPRI-DTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|262278116|ref|ZP_06055901.1| diaminopimelate decarboxylase [Acinetobacter calcoaceticus RUH2202]
gi|262258467|gb|EEY77200.1| diaminopimelate decarboxylase [Acinetobacter calcoaceticus RUH2202]
Length = 416
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 225/392 (57%), Gaps = 9/392 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKTAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 LAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKVVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ + VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRLQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L+++G CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIIGIDCHIGSQLTETKPFVDALDRVMVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTSHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P+ D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPS-TDTEEKTWDLVGAICETGDFIGKDRSLALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|424745633|ref|ZP_18173894.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-141]
gi|422941822|gb|EKU36885.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-141]
Length = 416
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 225/392 (57%), Gaps = 9/392 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKTAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 LAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEVDIETSLNAGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ + VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRLQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L+++G CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIIGIDCHIGSQLTETKPFVDALDRVMLMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTSHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P+ D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPS-SDTEEKTWDLVGAICETGDFIGKDRSLALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|421626104|ref|ZP_16066933.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC098]
gi|408695375|gb|EKL40930.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC098]
Length = 416
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK + +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKYYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y + P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDEIPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPRI-DTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|261867422|ref|YP_003255344.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365967221|ref|YP_004948783.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|415769432|ref|ZP_11484220.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|416074419|ref|ZP_11584508.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|416103116|ref|ZP_11589171.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444337222|ref|ZP_21151229.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|444345655|ref|ZP_21153665.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261412754|gb|ACX82125.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348006873|gb|EGY47248.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|348008387|gb|EGY48663.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348657539|gb|EGY75128.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|365746134|gb|AEW77039.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443542612|gb|ELT52924.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|443547333|gb|ELT56850.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 416
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + + A++ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKAALEHHWYAFENAFGNHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ N++SE +
Sbjct: 70 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNIESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|265982981|ref|ZP_06095716.1| diaminopimelate decarboxylase [Brucella sp. 83/13]
gi|306837594|ref|ZP_07470465.1| diaminopimelate decarboxylase [Brucella sp. NF 2653]
gi|264661573|gb|EEZ31834.1| diaminopimelate decarboxylase [Brucella sp. 83/13]
gi|306407301|gb|EFM63509.1| diaminopimelate decarboxylase [Brucella sp. NF 2653]
Length = 421
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 218/389 (56%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + ++ + V PFY+YS+ I R+ + A +++++ YA+KAN+N
Sbjct: 8 NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA VS E+R AL AG + +F+G GK ++ A + ++ NV+S
Sbjct: 67 VLAALAKLGAGADTVSEGEIRRALAAGIPANRIVFSGVGKTPREMDFALEARIYCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + AGK V LRINPDVD + H ++TG +KFGI +K +
Sbjct: 127 EPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L +VG H+GS I ++ F +A LM + +++A G + ++++GGGLGI Y
Sbjct: 187 SLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P + V + + L + EPGR ++ N LV V VK KNF+++
Sbjct: 246 TDNTPPPPPVAYAEIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIV 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LYDA+ I V +A + D VGPVCE+ D+LG +RE+ P G
Sbjct: 306 DAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ + GAY ++STYN ++ PE V
Sbjct: 366 LIAICTTGAYGAVLSSTYNSRLLIPEVLV 394
>gi|372487860|ref|YP_005027425.1| diaminopimelate decarboxylase [Dechlorosoma suillum PS]
gi|359354413|gb|AEV25584.1| diaminopimelate decarboxylase [Dechlorosoma suillum PS]
Length = 418
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/399 (35%), Positives = 220/399 (55%), Gaps = 15/399 (3%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE----GLNSIIGY 122
FS+K +G L+ E V + + P Y+YS+ + ++ AL G ++ Y
Sbjct: 4 FSRK-NGVLHAEAVALSSIAAQF-GTPTYVYSRAALEAAYGEFRDALAAHPAGAGGLVCY 61
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+KAN+N IL +LG G +VSG EL L AG + K +F+G GK ++ A +
Sbjct: 62 AVKANSNLGILSLFARLGAGFDIVSGGELERVLAAGAEAGKVVFSGVGKTEAEMARALEV 121
Query: 183 GVF-VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
G+ NV+S +L+ + VA R+ GKK + LR+NP+VD + HPY++TG K +KFG+ E
Sbjct: 122 GIRCFNVESVPELDRLNAVAVRL-GKKAPLSLRVNPNVDAKTHPYISTGLKQNKFGVAYE 180
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+ P +++ G CH+GS + F +A ++ +D++ A G + +++
Sbjct: 181 DALALYRRAASLPG-IEVTGIDCHIGSQLLDAAPFAEALDKVLALVDQLAAAGIRLHHID 239
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
+GGGLGI Y P+ + + + + + R L +I+EPGR L+ N L+ + +K
Sbjct: 240 LGGGLGIRYLDEAP--PRVADYLTPLLQKLEGRGLQVILEPGRRLVGNAGLLLTKIEYLK 297
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
KNF ++D +M +L+RP+LYDAY I V AP +A + + +VGP+CES DFLG
Sbjct: 298 PGEEKNFAIVDAAMNDLMRPALYDAYHDI--VEVAPGNAAKASYSIVGPICESGDFLGHG 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
REL G L V AGAY SM+S YN + R E V
Sbjct: 356 RELAVVP-GDLLAVMSAGAYGFSMSSNYNTRPRAAEVMV 393
>gi|385238638|ref|YP_005799977.1| diaminopimelate decarboxylase [Acinetobacter baumannii TCDC-AB0715]
gi|323519139|gb|ADX93520.1| diaminopimelate decarboxylase [Acinetobacter baumannii TCDC-AB0715]
Length = 407
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 217/377 (57%), Gaps = 8/377 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+YSK ++ +A + ++ I +A+K+N+N +L L KLG G +VSG EL
Sbjct: 18 PLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSNIAVLNVLAKLGAGFDIVSGGELA 77
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIV-VASRIAGKKVNV 210
L+AG D +K +F+G GK D+ + G+ NV+S +L+ I VA+R+ GKK +
Sbjct: 78 RVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNVESYAELDRIQKVAARL-GKKAPI 136
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
LR+NPDVD + HPY++TG K +KFGI ++ + + PN L++VG CH+GS +T
Sbjct: 137 SLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQYAASLPN-LEIVGIDCHIGSQLT 195
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
+ F DA ++ ID+++ G + +++IGGGLG+ Y P ++++ +
Sbjct: 196 ETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGVCY--KDETPPSVEEYANSMKPAL 253
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
L + +EPGRS+ AN L+ V +K +NF +ID +M +LIRP+LY+A+ I+
Sbjct: 254 EKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNFAIIDAAMNDLIRPALYEAWMDIQ 313
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
V P D E +D+VG +CE+ DF+GK+R L + L V AGAY M+S YN
Sbjct: 314 PVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQENDL-LTVLGAGAYGFVMSSNYNT 371
Query: 451 KMRPPEYWVRSLISIII 467
+ R E V S +I
Sbjct: 372 RGRAAEVMVSGEKSYLI 388
>gi|384215196|ref|YP_005606362.1| diaminopimelate decarboxylase [Bradyrhizobium japonicum USDA 6]
gi|354954095|dbj|BAL06774.1| diaminopimelate decarboxylase [Bradyrhizobium japonicum USDA 6]
Length = 421
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 210/399 (52%), Gaps = 3/399 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + ++ TV PFY YS + R+ + A G ++ YA+KAN+N
Sbjct: 8 NGVLHAEAVNLSELAATV-GTPFYCYSTATLERHYRVFADAFAGEKVLVCYAMKANSNQS 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L KLG GA +VSG EL+ AL AG +K +F+G GK +L A + +NV+S
Sbjct: 67 VLRTLAKLGAGADVVSGGELKRALAAGIPASKILFSGVGKTEAELRAALAADILCLNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + GK + +R+NPDVD H ++TG +KFGI +
Sbjct: 127 EPELELLSRLATEMGKTARISVRVNPDVDAGTHAKISTGKSENKFGIPIAYAREVYARAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P +++ G H+GS IT + A ++ ++ +R+ G + +++ GGGLGI YY
Sbjct: 187 KLPG-IEVTGTDVHIGSQITDLSKMETAFRILSEFVQTLRSDGHNISHVDFGGGLGIPYY 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P V+ + + L+ EPGR ++ N LV V VK KNF++I
Sbjct: 246 MDREAPPAPDAYAAMVKRVSHNLGCTLMFEPGRMIVGNAGILVAKVIYVKHGDGKNFVII 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP+LY+A+ I V+ A DVVGPVCE+ D+L +R LPTP G
Sbjct: 306 DAAMNDLIRPTLYEAHHDILPVTQPAAGAATIMADVVGPVCETGDYLALDRTLPTPKPGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ + AGAY A TYN + PE V+ ++ P
Sbjct: 366 LIAIMTAGAYGAVQAGTYNTRPLVPEVLVKGDQYAVVRP 404
>gi|444348099|ref|ZP_21155858.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|443547712|gb|ELT57154.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 475
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + + A++ A ++ +A+K+N N IL
Sbjct: 70 LMVENLPVKQLAEEF-GTPLYVYSKAALEHHWYAFENAFGNHPHLVCFAVKSNPNIAILN 128
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ N++SE +
Sbjct: 129 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNIESEAE 188
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 189 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 248
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 249 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 305
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 306 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 365
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 366 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 422
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 423 LAQRSAGAYGASMSSNYNSRPRTAEVMV 450
>gi|260576231|ref|ZP_05844223.1| diaminopimelate decarboxylase [Rhodobacter sp. SW2]
gi|259021499|gb|EEW24803.1| diaminopimelate decarboxylase [Rhodobacter sp. SW2]
Length = 421
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 215/392 (54%), Gaps = 5/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + ++ +V PFY YS +TR+ + +AL L ++ +AIK+ +N
Sbjct: 8 NGSLHAEDVALTEIAASV-GTPFYCYSAATLTRHYALFTEALNPLPHLVCFAIKSLSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG G +VSG E R A AG + +F+G GK +++ LA Q G+ NV+S
Sbjct: 67 VLKLLGDLGAGMDVVSGGEYRRARAAGVPGDRIVFSGVGKTRDEMRLALQGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL-QWFLDAV 249
E +L + + G + LR+NPDVD + H +ATG K +KFGI + Q + +A
Sbjct: 127 EPELRALSQVATELGLTAPIALRVNPDVDARTHEKIATGKKENKFGIPISRAPQVYAEAA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P L++VG H+GS +T+++ F A + + +RAQG ++ L++GGGLGI Y
Sbjct: 187 RL-PG-LQVVGIDVHIGSQLTELEPFEQAFQKIADLTQTLRAQGHDIRRLDLGGGLGIPY 244
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+ P P + ++ + + IEPGR + N LV V VK ++F++
Sbjct: 245 TRSNEAPPLPLDYGAMIQRTLGHLGCEIEIEPGRLISGNAGVLVAGVIYVKQGEDRDFLI 304
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L RPS+Y A+ I V+ AP E+ +DVVGPVCE+ D K R LP G
Sbjct: 305 LDAAMNDLARPSMYGAHHDILPVTEAPPGTEMQPYDVVGPVCETGDSFAKGRALPPLAEG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE V+
Sbjct: 365 DLVAFRSAGAYGAVMASEYNSRPLIPEVLVQG 396
>gi|386289581|ref|ZP_10066710.1| diaminopimelate decarboxylase [gamma proteobacterium BDW918]
gi|385277399|gb|EIF41382.1| diaminopimelate decarboxylase [gamma proteobacterium BDW918]
Length = 415
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 213/389 (54%), Gaps = 7/389 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E V + + + P Y+YS+ + + Y +AL G + ++ YA+KAN+N
Sbjct: 8 NGELHAESVALSSIAQQFGS-PCYVYSRAYLEQRFTEYTEALAGQDHLVCYAVKANSNIA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L L +LG G +VS EL L AG + +F+G GK ++ A + G+ NV+S
Sbjct: 67 VLNVLARLGAGFDIVSVGELERVLAAGGKAERIVFSGVGKTAAEMRRALEVGIHCFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + + G + +R+NPDVD + HPY++TG K++KFGI +
Sbjct: 127 EAELERLNQVATDMGVSAPISIRVNPDVDAKTHPYISTGLKDNKFGIDIARAPEVYRRAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ N + + G CH+GS + F DA +++ +D + A + +L++GGGLG+ Y
Sbjct: 187 SLSN-ITIKGVDCHIGSQLIDTSPFLDALDRVLSLVDTLAAMDITISHLDLGGGLGVRYR 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
V P I +R + R + L+ EPGRS+ AN L+ V +K N KNF +I
Sbjct: 246 DE--VAPLTGEYIAAIRARLGERKVTLMFEPGRSITANAGVLLTTVEYLKLNEHKNFAII 303
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M ++IRPSLY+A+ + V P + + +D VGPVCE+ DFL K+REL + G
Sbjct: 304 DAAMNDMIRPSLYEAWMDLLAVKP-RNEGVLRTYDFVGPVCETGDFLAKDRELRIAE-GD 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L + +GAY +M+S YN + R E V
Sbjct: 362 LLALASSGAYGFTMSSNYNSRGRAAEVMV 390
>gi|187925578|ref|YP_001897220.1| diaminopimelate decarboxylase [Burkholderia phytofirmans PsJN]
gi|187716772|gb|ACD17996.1| diaminopimelate decarboxylase [Burkholderia phytofirmans PsJN]
Length = 420
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 217/392 (55%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +T AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAVSLAEQF-GTPLYVYSRAALTEAWNAYAGACAGRRASVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ A GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGRAENTVFSGVGKHADEMRDALAAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK V LR+NPDVD + HPY++TG K++KFG+ E + A
Sbjct: 129 IPELDRLNAVAAAMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQAAA 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A N L++VG CH+GS IT+V + DA ++ +++I G ++ ++++GGGLGI Y
Sbjct: 189 AMAN-LEVVGIDCHIGSQITEVAPYLDAVDKVLELVEQIEQDGVKIRHIDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P+ + TV + + +R + + EPGRSL+ N L+ V +K KNF
Sbjct: 247 -DDETPPEIGEFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGMLLTRVEFLKPGAEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+AY I+ V +D +DVVGPVCES D+LG+ER L + +
Sbjct: 306 AIVDAAMTDLARPAMYEAYHAIDPV--VKRDVPAHVYDVVGPVCESGDWLGRER-LLSVE 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+S YN + R E V
Sbjct: 363 PGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMV 394
>gi|223939745|ref|ZP_03631617.1| diaminopimelate decarboxylase [bacterium Ellin514]
gi|223891616|gb|EEF58105.1| diaminopimelate decarboxylase [bacterium Ellin514]
Length = 432
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 227/412 (55%), Gaps = 26/412 (6%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F + F YCE+V V+ +++ P Y+YS+ +T + + QAL ++ +I +A+
Sbjct: 2 HYFRYVGNKF-YCENVSVESLVKKYGS-PLYIYSQRTLTEHFQKLDQALAPVDHLICFAL 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
K+N+N +L L LG G +VS EL+ A+ AG DP KC+F G GK ++ A ++GV
Sbjct: 60 KSNSNQAVLRTLADLGGGFDIVSSGELQRAIAAGADPRKCVFAGVGKTESEIEFALKKGV 119
Query: 185 F-VNVDSEFDLENIVVASRIAG--KKVN-VLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+ NV+SE +L+ I +RIAG KK+ + +R+NP+VD H + TG ++KFGI E
Sbjct: 120 YSFNVESEPELQRI---NRIAGRLKKIAPIAVRVNPNVDAHTHAKITTGTYDNKFGIAIE 176
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
++ N +KL G H+GS +T V+ F A + +++++ + +++ +
Sbjct: 177 NIEGVYARASKLKN-IKLRGLQMHIGSQLTSVEPFEQAVKKVSPLVERLKKK-HGLEFFS 234
Query: 301 IGGGLGI-----------DYYHT--GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIA 347
IGGGLGI +++ T G + P + L+ L +++EPGR +
Sbjct: 235 IGGGLGIVYDPALESSNPEWWRTTKGKKILTPTLYATRLVPLLKPLGLRILMEPGRFISG 294
Query: 348 NTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVV 407
N LV + VK G KNF+++D +M +LIRP+ YDAY E+V ++ ++ DVV
Sbjct: 295 NAGILVTRIEYVKRTGKKNFLIVDAAMNDLIRPAFYDAYH--EIVPLTRKNGQLISSDVV 352
Query: 408 GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
GP+CES DF K+R LP G L + AGAY MAS YN + E V
Sbjct: 353 GPICESGDFFAKDRPLPKLGEGDHLALLSAGAYGFVMASNYNTRSMAAEVLV 404
>gi|416090808|ref|ZP_11588160.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348009098|gb|EGY49287.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 449
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + + A++ A ++ +A+K+N N IL
Sbjct: 44 LMVENLPVKQLAEEF-GTPLYVYSKAALEHHWYAFENAFGNHPHLVCFAVKSNPNIAILN 102
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ N++SE +
Sbjct: 103 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNIESEAE 162
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 163 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 222
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 223 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 279
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 280 ETPPHPTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 339
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 340 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 396
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 397 LAQRSAGAYGASMSSNYNSRPRTAEVMV 424
>gi|294012853|ref|YP_003546313.1| diaminopimelate decarboxylase [Sphingobium japonicum UT26S]
gi|292676183|dbj|BAI97701.1| diaminopimelate decarboxylase [Sphingobium japonicum UT26S]
Length = 426
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/390 (33%), Positives = 212/390 (54%), Gaps = 7/390 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNS-IIGYAIKANNNY 130
DG + E V + D+ V P Y+YS +TR+V +++ L ++ +I +A+KAN N
Sbjct: 8 DGAMLAEQVPMADIAAQV-GTPVYIYSTATLTRHVAVFREGLSQIHDPLIAFAVKANPNA 66
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVD 189
+L L KLG GA +VS EL A+ AG + +F+G GK +++ +A ++G++ N++
Sbjct: 67 AVLATLAKLGLGADVVSAGELLRAIAAGIPAERIVFSGVGKTADEMRIALEQGIYQFNLE 126
Query: 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
SE + E + + G+K V RINPDVD H ++TG +KFGI ++ A
Sbjct: 127 SEPEAEMLSEVALSMGRKAPVAYRINPDVDAGTHAKISTGKSENKFGIPYDRALASYAAA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
+ P L + G H+GS +T + A + + I+++RA+G ++ ++GGGLG+ Y
Sbjct: 187 RDLPG-LDVQGVAVHIGSQLTDLTPLEAAFIKVGALIERLRAEGHDIRTADLGGGLGVPY 245
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
+ + P P + V + N+ L+ EPGR ++ N L++ V VK F++
Sbjct: 246 DPSQPLPPSPADYGAMVTRITQGWNVRLMFEPGRLIVGNAGVLLSQVVRVKQGAQAPFVI 305
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +L+RPSLYDA+ I V P E + +VVGPVCE+ D R++ G
Sbjct: 306 VDAAMNDLLRPSLYDAWHDIRAVHP---KGERAAANVVGPVCETGDTFAMHRDMDVVGAG 362
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY +MASTYN + PE V
Sbjct: 363 DLVAFMTAGAYGATMASTYNSRALTPEVLV 392
>gi|108757300|ref|YP_634066.1| diaminopimelate decarboxylase [Myxococcus xanthus DK 1622]
gi|108461180|gb|ABF86365.1| diaminopimelate decarboxylase [Myxococcus xanthus DK 1622]
Length = 413
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ EDV + + E+V P Y+YS +TR++ +A +I Y++KAN+N I
Sbjct: 9 GVLHAEDVPLAAIAESVGT-PTYVYSTATLTRHIRVVTEAFGDRPHLICYSVKANSNLAI 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSE 191
L + + G G +VSG EL G D K +F G GK E++ A G+ + NV+S
Sbjct: 68 LRLIAERGGGFDIVSGGELARVRHVGGDAGKTVFAGVGKTQEEMEAALAAGILLFNVESA 127
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE + R G++ LR+NPDVD + H Y++TG K SKFG+ E+ K
Sbjct: 128 EELEALDAVGRRLGRRAPFALRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYARAKK 187
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
L G CH+GS +T+ R A + ++ +G + YL++GGGLGI Y
Sbjct: 188 MKGLLA-AGLDCHIGSQLTQTAPIRAALSKVAGLYSALKEKGHPLAYLDVGGGLGITYLD 246
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
P P TV + LI+EPGR+L+ N L+ V K ++F+V+D
Sbjct: 247 E--TPPSPEEYARTVLAAAGATGATLILEPGRALVGNAGVLLTRVLYRKKTPARHFVVVD 304
Query: 372 GSMAELIRPSLYDAYQHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
M +L+RP+LY+A+ ++ LV + E+ DVVGPVCES D L K R L P G
Sbjct: 305 AGMNDLLRPALYEAHHGLQPLVKRRGKAVEV---DVVGPVCESTDVLAKARPLVLPQAGE 361
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
AGAY MSM+STYN + RP E V
Sbjct: 362 LFAFMSAGAYGMSMSSTYNSRPRPAEVLV 390
>gi|413959418|ref|ZP_11398654.1| diaminopimelate decarboxylase [Burkholderia sp. SJ98]
gi|413940375|gb|EKS72338.1| diaminopimelate decarboxylase [Burkholderia sp. SJ98]
Length = 420
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 212/392 (54%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + + P Y+YS+ +TR AY A G + + A+KAN+N
Sbjct: 10 DGVLHVEGVSAASLADQF-GTPLYVYSRDALTRAYHAYADACAGRKATVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L ++G G +VS EL L AG +F+G GK + ++ A + GV NV+S
Sbjct: 69 VLNVFARMGAGFDIVSSGELARVLAAGGKAENTVFSGVGKTVAEMREALEAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L + ++ GKK V LR+NPDVD + HPY++TG K++KFG+ +
Sbjct: 129 IPELHALNEVAKSLGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFSDARATYAQAH 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A PN L +VG CH+GS IT++ + DA ++ +++I A G + ++++GGGLGI Y
Sbjct: 189 AMPN-LDVVGIDCHIGSQITEISPYLDALDKLLELVEQIEADGMSIRHVDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + T+ + + R + EPGRSL+ N L+ V +K KNF
Sbjct: 247 -DDETPPDIGVFVKTLLDHIEKRGHGQREVYFEPGRSLVGNAGVLLTRVEFLKPGEEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+A+ I V +D + +DVVGPVCES D+LG++REL
Sbjct: 306 AIVDAAMNDLARPAMYEAFHRI--VPVVKRDEKAHTYDVVGPVCESGDWLGRDRELSIAP 363
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+S YN + R E V
Sbjct: 364 -GDLLAICSAGAYGFVMSSNYNTRPRAAEIMV 394
>gi|293609896|ref|ZP_06692198.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424855|ref|ZP_18914967.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-136]
gi|292828348|gb|EFF86711.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425698172|gb|EKU67816.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-136]
Length = 416
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 225/392 (57%), Gaps = 9/392 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSMEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKVVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ + VA+RI GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRLQKVAARI-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L+++G CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIIGIDCHIGSQLTETKPFVDALDRVMLMIEELKKLGITLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTSHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P+ D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPS-SDTEEKTWDLVGAICETGDFIGKDRSLALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|407799698|ref|ZP_11146576.1| diaminopimelate decarboxylase [Oceaniovalibus guishaninsula
JLT2003]
gi|407058175|gb|EKE44133.1| diaminopimelate decarboxylase [Oceaniovalibus guishaninsula
JLT2003]
Length = 421
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 205/390 (52%), Gaps = 5/390 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L EDV + D+ +V P Y+YS + R+ + +AL G++ +I YA+KA +N
Sbjct: 8 DGILMAEDVALADIAASVGT-PVYVYSTATLRRHYTVFAEALAGMDHLICYAMKALSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L +G G +VSG E AL AG + +F+G GK +++ A Q GV NV+S
Sbjct: 67 VLKLLGDMGAGMDVVSGGEYARALAAGIPGERIVFSGVGKTRDEMARALQGGVRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E +LE + +R + LR+NPDVD H +ATG + KFGI +
Sbjct: 127 EPELEALDRVARQMDTVAPITLRVNPDVDAGTHEKIATGRRQDKFGIPIARAPQVYAKAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
P L++VG H+GS +T + F A + +R+QG +D L++GGGLGI Y
Sbjct: 187 RMPG-LRVVGIDVHIGSQLTDLAPFEAAYAKVAELTRLLRSQGHAIDRLDLGGGLGIPYV 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
A P P + +R + + IEPGR + N LV V +K ++F+++
Sbjct: 246 QDNAAPPLPSDYGAMIRRTLGDLGCQIEIEPGRLIAGNAGVLVASVIYLKQGEDRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRPS+Y A+ I LV PAP + + D+VGPVCES D + R +P G
Sbjct: 306 DAAMNDLIRPSMYGAHHDIVPLVQPAPG-VDRAAVDIVGPVCESGDTFARARPMPPLGEG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY MAS YN + PE V
Sbjct: 365 DLVAFRSAGAYGAVMASEYNSRPLIPEVLV 394
>gi|82523967|emb|CAI78778.1| diaminopimelate decarboxylase [uncultured epsilon proteobacterium]
Length = 403
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 210/378 (55%), Gaps = 6/378 (1%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K P Y+Y ++ K A +G SI+ YA+KAN+N +++H LG GA VS E
Sbjct: 12 KTPLYVYDLDYMSAQYNELKAAFKGRKSIMAYAVKANSNLSVVKHFADLGSGADCVSIGE 71
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
+R A AG K IF+G GK +++ A ++ + ++NV+SE +L + + ++
Sbjct: 72 VRRAFLAGIPSYKIIFSGVGKSDDEIREAIEKDILYINVESEAELGRVELIAKELNCTCR 131
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
+ +R+NP++DP+ HPY++TG ++KFG+ + K N L VG H H+GS +
Sbjct: 132 ISIRVNPNIDPKTHPYISTGLHDNKFGVDLSSAKRMYIFAKNSEN-LDPVGIHFHIGSQL 190
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
T++ ++A ++ + + ++ E+ + +IGGGLG+ Y V P + +
Sbjct: 191 TQLKPIYESAEIVADLVRSLQNIKIELKFFDIGGGLGVKY--DDEVTINPYDYAQAILGT 248
Query: 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHI 389
+ +L ++ EPGR L AN + V K NG K F+V+DG+M +L+RP+LY AY I
Sbjct: 249 LKGLDLTVVCEPGRFLTANAGYFLTKVLYEKQNGDKKFVVVDGAMNDLLRPALYGAYHKI 308
Query: 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
E ++ +E+ K D+VGPVCES DF K+ LP + LV+H AG+Y M S YN
Sbjct: 309 EAITDNA--SEMQKVDIVGPVCESGDFFAKDYMLPKLEHNDLLVIHSAGSYGFGMGSNYN 366
Query: 450 LKMRPPEYWVRSLISIII 467
+ R E +++ + +I
Sbjct: 367 TRGRSAEVALKNGTAKVI 384
>gi|163744294|ref|ZP_02151654.1| diaminopimelate decarboxylase [Oceanibulbus indolifex HEL-45]
gi|161381112|gb|EDQ05521.1| diaminopimelate decarboxylase [Oceanibulbus indolifex HEL-45]
Length = 421
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/409 (34%), Positives = 219/409 (53%), Gaps = 7/409 (1%)
Query: 63 VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGY 122
++H K DG L+ EDV + ++ V P Y+YS + R+ + AL G++ ++ Y
Sbjct: 1 MDHFLYK--DGVLHAEDVSLAEIAAAV-GTPVYVYSTATLLRHFHLFDDALSGMDHLVCY 57
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A+KAN+N +L L + G G +VSG E R A AG + +F+G GK E++ LA
Sbjct: 58 AMKANSNQAVLRTLAQAGAGMDVVSGGEYRRAKAAGVAGDRIVFSGVGKTREEIELALTG 117
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241
G+ NV+SE ++ + + +R GK + +R+NPDVD + H +ATG +KFGI +
Sbjct: 118 GIRQFNVESEPEMILLDIVARELGKVAPITIRVNPDVDAKTHAKIATGKSENKFGIPIAR 177
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
+ P L+++G H+GS +T + F A + + +RA G + L++
Sbjct: 178 AREVYAMAATLPG-LEIIGIDVHIGSQLTDLAPFEQAYGKVAELTEVLRADGHNIRRLDL 236
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT 361
GGGLGI Y + + P P + V+ + + + IEPGR + N LV+ V +K+
Sbjct: 237 GGGLGIPYERSNSAPPLPTDYGAMVQRTLGHLDCEIEIEPGRLIAGNAGVLVSEVIYLKS 296
Query: 362 NGTKNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKE 420
++F+++D +M +LIRP++YDA+ I L PAP AE D+VGPVCES D K+
Sbjct: 297 GEGRDFLILDAAMNDLIRPAMYDAWHDIVPLNEPAPG-AEPRPVDIVGPVCESGDTFAKQ 355
Query: 421 RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R +P G + AGAY M+S YN + PE V +I P
Sbjct: 356 RMMPVLGSGDLVAFRSAGAYGAVMSSEYNSRPLIPEVLVNGDQFAVIRP 404
>gi|307731218|ref|YP_003908442.1| diaminopimelate decarboxylase [Burkholderia sp. CCGE1003]
gi|307585753|gb|ADN59151.1| diaminopimelate decarboxylase [Burkholderia sp. CCGE1003]
Length = 420
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/392 (36%), Positives = 215/392 (54%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +T AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAVSLAEQF-GTPLYVYSRAALTEAWNAYASACAGRRASVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK ++ A GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGKAENTVFSGVGKHANEMREALAAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK V LR+NPDVD + HPY++TG K++KFG+ ++ + A
Sbjct: 129 IPELDRLNAVAAQMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFDEARATYQAAA 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A N L++VG CH+GS IT+V + DA ++ +++I G + ++++GGGLGI Y
Sbjct: 189 AMAN-LEVVGIDCHIGSQITEVAPYLDAVDKLLELVEQIEQDGMTIRHIDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + + TV + + +R + + EPGRSL+ N L+ V +K KNF
Sbjct: 247 -DDETPPDISDFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGVLLTRVEFLKPGAEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+AY I+ V A + +DVVGPVCES D+LG+ER L +
Sbjct: 306 AIVDAAMNDLARPAMYEAYHAIDAVVQRELPAHV--YDVVGPVCESGDWLGRERLLAV-E 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+S YN + R E V
Sbjct: 363 PGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMV 394
>gi|85705851|ref|ZP_01036947.1| diaminopimelate decarboxylase [Roseovarius sp. 217]
gi|85669439|gb|EAQ24304.1| diaminopimelate decarboxylase [Roseovarius sp. 217]
Length = 421
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/390 (35%), Positives = 211/390 (54%), Gaps = 5/390 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L EDV + ++ E V PFY YS + R+ + +AL G++ ++ YA+KA +N
Sbjct: 8 NGVLQAEDVPLSEIAEAV-GTPFYCYSTATLERHFRLFDEALTGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L +LG G +VSG E A AG + +F+G GK E++ LA G+ NV+S
Sbjct: 67 ILKTLARLGAGMDVVSGGEYARAKAAGVPGERIVFSGVGKTREEMRLALMGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMGVLSAVAVELGLRAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYAQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+++G H+GS +T + FR A + +R G ++ L++GGGLGI Y
Sbjct: 187 ALPG-LEVIGIDVHIGSQLTDLAPFRLAYEKVAELTQVLREDGHDIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P +RE++ + IEPGR + N LV+ V +K+ ++F+++
Sbjct: 246 RSNEAPPLPTEYGALIREVLGHLGCEIEIEPGRLIAGNAGILVSRVIYLKSGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
D +M +LIRP++YDA+ I LV PAP E +DVVGPVCES D K R LP G
Sbjct: 306 DAAMNDLIRPAMYDAHHDIVPLVEPAP-GVEQQPYDVVGPVCESGDTFAKGRMLPPLAEG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY M+S YN + PE V
Sbjct: 365 DLVAFRSAGAYGAVMSSEYNTRPLVPEVLV 394
>gi|257092050|ref|YP_003165691.1| diaminopimelate decarboxylase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044574|gb|ACV33762.1| diaminopimelate decarboxylase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 414
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 227/396 (57%), Gaps = 11/396 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
F+++ +G L+ E V + D+ P ++YS+ + ++ +++ L GL++++ YA+K
Sbjct: 3 AFARR-NGVLHAESVSLIDLAARFGT-PCWVYSRAALEASLAEFERELAGLDALVCYAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L+ + G G +VSG ELR AL AG DP + +F+G GK ++ LA +
Sbjct: 61 ANSNLAVLDVFARRGAGFDIVSGGELRRALAAGADPRRIVFSGVGKTAAEMELALAADIL 120
Query: 186 -VNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+S +L+ + VA R+ GK + LR+NPDVD + HPY++TG K +KFG+ E+
Sbjct: 121 CFNVESAPELDRLSAVAGRL-GKTAPISLRVNPDVDAKTHPYISTGLKENKFGVAYEEAL 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
+ PN L + G CH+GS + F A ++ +D++ A G + ++++GG
Sbjct: 180 ALYRHAASLPN-LTISGIDCHIGSQLLDPAPFAAALDKILTLVDQLAANGIVLHHIDLGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y A P + + + + + R+L +++EPGR L+ N L+ V +K
Sbjct: 239 GLGIRYRDEDA--PTVQAYLQPMLQKLRDRHLQVLLEPGRRLVGNAGLLLTRVEYLKPGE 296
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
KNF ++D +M +L RP+LY ++ I V APQ A +++VGPVCES DFLG R+L
Sbjct: 297 VKNFAIVDAAMNDLARPALYGSWHDIVPVV-APQGA-TRPWEIVGPVCESGDFLGHGRDL 354
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+M+S YN + R E V
Sbjct: 355 ALAT-GDLLAIMSAGAYGMAMSSNYNSRPRAAEVMV 389
>gi|421695443|ref|ZP_16135050.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-692]
gi|404565774|gb|EKA70937.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-692]
Length = 416
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 226/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDAYKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ +D+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMVDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|417846215|ref|ZP_12492227.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21639]
gi|341953234|gb|EGT79746.1| Diaminopimelate decarboxylase [Haemophilus haemolyticus M21639]
Length = 415
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 226/404 (55%), Gaps = 10/404 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F + + LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+
Sbjct: 3 FFQYKNNKLYAEDIPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGKRPHLICFAVKS 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ-EGVF 185
+N +L + KLG G +VS EL L AG D +K +F+G K E+++ A + E
Sbjct: 62 CSNIGVLNIMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVEIRC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L++I + GK + LR+NPDVD HPY++TG K +KFG+ + +
Sbjct: 122 FNVESVSELKHINQLAGKMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
PN +K+ G CH+GS +T++ F D ++ +++++ G + +L++GGGL
Sbjct: 182 YKLASTLPN-IKITGMDCHIGSQLTELQPFLDTTDRLIVLMEQLKEDGITLKHLDLGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y T P P + + + E + L +I+EPGR++ AN LV V +K N +
Sbjct: 241 GVTY--TDETPPHPSDYANALLEKLKDYPELEIILEPGRAISANAGILVAKVQYLKNNES 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
NF + D M ++IRP+LY+AY +I E+ ++ I +DVVGPVCE++DFLGK+REL
Sbjct: 299 HNFAITDTGMNDMIRPALYEAYMNIVEIDRTLAREKAI--YDVVGPVCETSDFLGKQREL 356
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
+ G + AGAY SM+S YN + R E V S +I
Sbjct: 357 SIAE-GDYIAQCSAGAYGASMSSNYNSRPRTAEVLVDGDQSYLI 399
>gi|392310805|ref|ZP_10273339.1| diaminopimelate decarboxylase [Pseudoalteromonas citrea NCIMB 1889]
Length = 417
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 215/395 (54%), Gaps = 7/395 (1%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F D L+ E+V V D+ + P Y+YS+ R+ A+ A +G ++ YA+KA
Sbjct: 3 FFHYKDQQLFAEEVAVADIAKQY-GTPCYVYSRKTFERHYHAFTDAADGHPRLVCYAVKA 61
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L KLG G +VS EL + AG D +K +F+G K +++ A +
Sbjct: 62 NSNIAVLNVLAKLGAGFDIVSKGELARVIEAGGDTSKVVFSGVAKTSDEIEFALAHNIKC 121
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+S +L+ I + K + +R+NPD+D HPY++TG K +KFGI ++
Sbjct: 122 FNVESVAELKRISQVAHRVNKIARISIRVNPDIDANTHPYISTGLKENKFGIDIKQAFDV 181
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A P L +VG H+GS +T V+ F A ++ I+++++ G E+ +L+IGGGL
Sbjct: 182 YQLAYALP-ALDVVGVDFHIGSQLTDVEPFLAALDKVLALIEQLKSAGIELHHLDIGGGL 240
Query: 306 GIDYYHTGAVLPKPRNLIDTVR-ELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y P P V+ +L +L L+ EPGR++ AN LV V +K +
Sbjct: 241 GVPY--DSEKPPHPSAYAAEVKAKLTNYPHLELVFEPGRAIAANAGILVTQVEYLKPSQE 298
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D M +++RPSLY A+Q+I V+P +DVVGPVCE+ DFLGK+R L
Sbjct: 299 KHFAIVDAGMNDMLRPSLYQAWQNIIAVAPRDDGTPTHNYDVVGPVCETGDFLGKDRPLA 358
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L AGAY +M+S YN + R E V
Sbjct: 359 I-QAGDLLAQRSAGAYGFTMSSNYNSRPRAAELMV 392
>gi|260549303|ref|ZP_05823523.1| diaminopimelate decarboxylase [Acinetobacter sp. RUH2624]
gi|424054603|ref|ZP_17792127.1| diaminopimelate decarboxylase [Acinetobacter nosocomialis Ab22222]
gi|425740670|ref|ZP_18858838.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-487]
gi|260407709|gb|EEX01182.1| diaminopimelate decarboxylase [Acinetobacter sp. RUH2624]
gi|407439352|gb|EKF45877.1| diaminopimelate decarboxylase [Acinetobacter nosocomialis Ab22222]
gi|425494693|gb|EKU60892.1| diaminopimelate decarboxylase [Acinetobacter baumannii WC-487]
Length = 416
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 142/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKTAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 LAVLSVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEVDIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPR-TDTEEKVWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMVSGENSYLI 397
>gi|336476631|ref|YP_004615772.1| diaminopimelate decarboxylase [Methanosalsum zhilinae DSM 4017]
gi|335930012|gb|AEH60553.1| diaminopimelate decarboxylase [Methanosalsum zhilinae DSM 4017]
Length = 426
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 219/389 (56%), Gaps = 29/389 (7%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+ ++ +I N YK A ++ + YA KAN+N + + + G GA + S EL
Sbjct: 32 PVYVSNESRIRDNFRRYKDAFP--DADLYYAAKANSNLTLFKIMASEGAGADVFSDGELY 89
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKK---VN 209
LAL AG K +FNGN K +L++A + GV V++DS ++ + SRIA K+ V+
Sbjct: 90 LALMAGIPRDKILFNGNSKSDRELLMAVKTGVRVSLDS---IDELRTLSRIAKKEKKIVD 146
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL-----VGAHCH 264
V R+NPDV PQ HP ++TG K SKFGI +E +AV A+ L L +G HCH
Sbjct: 147 VSFRVNPDVSPQTHPKISTGLKASKFGIPHE------EAVHAYKEALDLPGVNPIGIHCH 200
Query: 265 LGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID 324
+GS I ++ F +A M++ +++I G +V ++++G GLGI Y G +P P++L D
Sbjct: 201 IGSQILEISPFSEAMNKMMDLVEQISRLGVDVKFVDMGSGLGIP-YEKGKAVPSPKDLAD 259
Query: 325 TVRELVLSR------NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI 378
+ + SR + LI+EPGR ++ ++ L+ V +K K F+ +D LI
Sbjct: 260 LILPIFKSRCRDEGISPKLILEPGRYIMGDSTLLLTTVNTMK-EAAKKFVGVDAGFNLLI 318
Query: 379 RPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAG 438
RP++YD+Y H+ +V+ + +VGP+CES D L +RELP ++G + DAG
Sbjct: 319 RPAMYDSY-HLAVVANKADKKPEEIYSIVGPICESGDILAHDRELPRIEKGDIIAFFDAG 377
Query: 439 AYCMSMASTYNLKMRPPEYWVR-SLISII 466
AY SM+S YN + R E + +I +I
Sbjct: 378 AYGFSMSSQYNGRTRCAELLINDGMIDVI 406
>gi|260556500|ref|ZP_05828718.1| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
gi|403675968|ref|ZP_10938054.1| diaminopimelate decarboxylase [Acinetobacter sp. NCTC 10304]
gi|260409759|gb|EEX03059.1| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
gi|452947919|gb|EME53400.1| diaminopimelate decarboxylase [Acinetobacter baumannii MSP4-16]
Length = 416
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 226/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPRTDTVE-KTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|330507768|ref|YP_004384196.1| diaminopimelate decarboxylase [Methanosaeta concilii GP6]
gi|328928576|gb|AEB68378.1| diaminopimelate decarboxylase [Methanosaeta concilii GP6]
Length = 427
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 213/395 (53%), Gaps = 15/395 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
D LY EDV + E P Y+ S+ ++ N+ Y +A +A+KAN N
Sbjct: 12 DNHLYIEDVDCCR-LAAEEGTPLYVTSERRLRENIRRYHRAFPDAEKY--FAVKANGNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191
IL+ + G GA + S EL L AG +FNGN K +D + A Q GV ++VDS
Sbjct: 69 ILQVAAQEGMGADIFSAGELSLVRLAGIPRDMILFNGNSKSEKDHIAALQAGVRISVDSN 128
Query: 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+LE++ +R + +L R+NP+V P+ HP +ATG ++SKFGI E++ +A
Sbjct: 129 EELEHLARTARNLDSEAEILFRVNPNVSPKTHPKIATGLRSSKFGIPAEQVAGTYK--RA 186
Query: 252 HPNE-LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
E +K VG HCH+GS I F +AA M++ + A+G V+ +++GGGLGI Y
Sbjct: 187 MELEGIKPVGLHCHIGSQILDTAPFAEAAGRMMDITRAVVAEGGNVERIDLGGGLGIQ-Y 245
Query: 311 HTGAVLPKPRNLIDTVRELVLS--RNL----NLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
+ P P +L V ++ R++ LI+EPGRS++A++ ++ V VK
Sbjct: 246 QPDSTAPLPSDLAKAVLPVIQDSCRDMGIFPQLILEPGRSIVADSTIMLTGVNVVK-RAH 304
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
NF+ +D L RP LYD+Y H+ + A + E + +VGP+CE+ D L ++R LP
Sbjct: 305 VNFVAVDAGFNVLARPMLYDSYHHVLAANRAEEQGE-ETYTIVGPICETGDVLARDRRLP 363
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
RG L DAGAY SMAS YN + RP E V
Sbjct: 364 RLVRGDTLAFLDAGAYGFSMASQYNGQPRPAEVLV 398
>gi|221640187|ref|YP_002526449.1| diaminopimelate decarboxylase [Rhodobacter sphaeroides KD131]
gi|221160968|gb|ACM01948.1| Diaminopimelate decarboxylase [Rhodobacter sphaeroides KD131]
Length = 435
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 212/391 (54%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + D+ TV PFY YS + R+ + +AL L ++ +AIK+ +N
Sbjct: 22 NGSLHAEEVPLSDIAATV-GTPFYCYSAATLERHYRLFTEALTPLPHLVCFAIKSLSNLA 80
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG G +VS E A AG + +F+G GK E++ +A + G+ NV+S
Sbjct: 81 VLKLLGDLGAGMDVVSAGEYLRARAAGVPGDRIVFSGVGKTREEMRIALEGGIRQFNVES 140
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG K +KFGI E+
Sbjct: 141 EPEMRALSEVASSMGLRAPIAVRVNPDVDARTHEKIATGKKENKFGIPIERASEVYAEAA 200
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+++G H+GS +T+++ F A + + ++RA+G E+ L++GGGLGI Y
Sbjct: 201 ALPG-LEVMGVDVHIGSQLTELEPFEQAYLKVAELTGRLRAEGHEIRRLDLGGGLGIPYT 259
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P + ++ V + IEPGR + N+ LV+ V VK ++F+++
Sbjct: 260 RSNEAPPLPTDYGALIKRTVGHLGCEIEIEPGRLISGNSGVLVSRVIYVKNGEGRDFLIL 319
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPS+Y A+ I ++ A E +DVVGPVCE+ D K R LP G
Sbjct: 320 DAAMNDLVRPSMYGAHHDIVPLAEAAPGTESQPYDVVGPVCETGDTFAKARALPPMAEGD 379
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE VR
Sbjct: 380 LVAFRSAGAYGAVMASEYNSRPLVPEVLVRG 410
>gi|78189076|ref|YP_379414.1| diaminopimelate decarboxylase [Chlorobium chlorochromatii CaD3]
gi|78171275|gb|ABB28371.1| diaminopimelate decarboxylase [Chlorobium chlorochromatii CaD3]
Length = 418
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/402 (33%), Positives = 214/402 (53%), Gaps = 12/402 (2%)
Query: 63 VEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGY 122
++ + +G L C+ V +Q + E P Y+ S+ + + EA+++A + L+ Y
Sbjct: 2 LQSTYFSYCNGALLCDGVPLQTLAEQY-GTPLYVTSERSLIESYEAFERAFQPLHHFTCY 60
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
++KAN N +++ LGCG + SG EL +L+AG P + IF G GK E++ A +
Sbjct: 61 SVKANYNLSVIKTFAALGCGCDVNSGGELYRSLQAGVAPDQIIFAGVGKKYEEIAYALES 120
Query: 183 GVFV---NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239
GV + SE + N + A + GK ++ LRINP+V + HPY+ TG+ KFGI
Sbjct: 121 GVLMLKAESVSELHVINRIAAEQ--GKIASIALRINPNVTAETHPYITTGDSKEKFGIDE 178
Query: 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYL 299
L ++ P+ ++L+G H+GS I + + A ++ + ++ GF ++YL
Sbjct: 179 ADLADLFALIRQLPH-VRLIGLDMHIGSQIFDPEYYVAATTKLLALFNLSKSMGFALEYL 237
Query: 300 NIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
+IGGG + Y T P R + + L+ + +I EPGR L+AN L+ +
Sbjct: 238 DIGGGFPVTYTDTKHATPIER-FAEKLVPLLQPLGVTVIFEPGRYLVANASVLLTRILYR 296
Query: 360 KTNGT-KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLG 418
K N K F V+D + ELIRP+LY ++ ++ V Q+A + DVVGPVCES+DF
Sbjct: 297 KRNHVGKEFFVVDAGLTELIRPALYQSHHEVQAVQ--RQEASVIA-DVVGPVCESSDFFA 353
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
++REL G L V GAY M S YN ++RP E VR
Sbjct: 354 RQRELDAVPEGGLLAVMSCGAYASVMGSNYNGRLRPAEVMVR 395
>gi|416048570|ref|ZP_11576344.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347992533|gb|EGY33929.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
Length = 416
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A++ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKAALERHWYAFENAFGNHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + E + + N L +I+E GR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHPTEYAKALWEKLSAFNELEIIVEHGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|421655521|ref|ZP_16095844.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-72]
gi|408508846|gb|EKK10525.1| diaminopimelate decarboxylase [Acinetobacter baumannii Naval-72]
Length = 416
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 227/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V + D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVV-SRTDTEEKTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|126726029|ref|ZP_01741871.1| diaminopimelate decarboxylase [Rhodobacterales bacterium HTCC2150]
gi|126705233|gb|EBA04324.1| diaminopimelate decarboxylase [Rhodobacterales bacterium HTCC2150]
Length = 421
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/402 (35%), Positives = 209/402 (51%), Gaps = 9/402 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV + D+ V PFY YS R+ + +AL +I YA+KAN+N
Sbjct: 8 DGALHAEDVPLADIATAV-GTPFYAYSAATFARHFQVLDEALSWGPHLICYAMKANSNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L +G G +VSG E A AG + +F+G GK +++ + + G+ NV+S
Sbjct: 67 ILKMLGDMGAGMDVVSGGEYARARAAGVPGERIVFSGVGKTRDEIEMTLKGGIRQFNVES 126
Query: 191 EFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
E ++ VV S IA G + +R+NPDVD + H +ATG K +KFGI + +
Sbjct: 127 EPEM---VVLSEIATKLGLIAPITIRVNPDVDAKTHEKIATGKKENKFGIPISRAREVYA 183
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
P LK+VG H+GS +T + +R+A L+ +R G E+ L++GGGLGI
Sbjct: 184 MAAGLPG-LKIVGIDVHIGSQLTDLTPYREAFELVAELTKTLREDGHEISRLDLGGGLGI 242
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P P VRE V + IEPGR + N LV+ V VK+ + F
Sbjct: 243 PYARDNDAPPVPAEYGQIVRETVGDLGCEIEIEPGRLVAGNAGVLVSEVIYVKSGEDREF 302
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+++D +M +LIRP++Y A+ I + A E+ +D+VGPVCES D K+R LP +
Sbjct: 303 LILDAAMNDLIRPAMYSAHHDIVPLKEAEVGVEMQPYDIVGPVCESGDTFAKQRPLPPLE 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+ AGAY MAS YN + PE V +I P
Sbjct: 363 ATDLVAFRSAGAYGAVMASEYNTRPMVPEVLVMGDQFAVIRP 404
>gi|399018237|ref|ZP_10720420.1| diaminopimelate decarboxylase [Herbaspirillum sp. CF444]
gi|398101798|gb|EJL92001.1| diaminopimelate decarboxylase [Herbaspirillum sp. CF444]
Length = 431
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 228/405 (56%), Gaps = 23/405 (5%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---------SIIGY 122
DG L+ E+V + + + P Y+YSK +T N AY A + +++ Y
Sbjct: 8 DGVLHAENVPL-NALAGKFGSPLYVYSKAALTANYSAYADACKKAGRSVDAGDGGALVCY 66
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
++K+N+N +L L KLG G +VSG EL + AG DP K IF+G GK +++ LA +
Sbjct: 67 SVKSNSNLAVLNLLGKLGSGFDIVSGGELLRVIAAGGDPRKVIFSGVGKGRDEMRLALEH 126
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241
+ NV+S ++ + + AGK+ + LR+NP+VD + HPY++TG K +KFG+ E
Sbjct: 127 DILCFNVESIPEVHRLNEVAGEAGKRARISLRVNPNVDAKTHPYISTGLKENKFGVAYED 186
Query: 242 -LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
L + DA A PN +++VG CH+GS + +A ++ ID++ ++G + +L+
Sbjct: 187 ALACYRDAA-ALPN-IEVVGIDCHIGSQLLDDAPLLEALDKVIELIDQLESEGIAIHHLD 244
Query: 301 IGGGLGIDYYH-----TGAVLPKPRNLIDTVRELVL-SRNLNLIIEPGRSLIANTCCLVN 354
IGGG+GI Y G L + +D R+ + + ++ EPGRS++ N L+
Sbjct: 245 IGGGIGITYDDEQPVPVGDYLGRLFARVDAWRKQKYDGKAIKVMFEPGRSIVGNAGLLIT 304
Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
V +K TKNF V+D +M +L+RP+LY+A+ +++V A+ +D+VGPVCES
Sbjct: 305 EVQYLKHGETKNFAVVDAAMNDLMRPALYEAWHGVQVVQQRKDAAQT--YDIVGPVCESG 362
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
D+L + REL G L + AGAY M+MAS YN + R E V
Sbjct: 363 DWLARNRELAIAP-GDLLALMSAGAYGMTMASNYNTRGRAAEVLV 406
>gi|77464302|ref|YP_353806.1| diaminopimelate decarboxylase [Rhodobacter sphaeroides 2.4.1]
gi|332559193|ref|ZP_08413515.1| diaminopimelate decarboxylase [Rhodobacter sphaeroides WS8N]
gi|77388720|gb|ABA79905.1| diaminopimelate decarboxylase [Rhodobacter sphaeroides 2.4.1]
gi|332276905|gb|EGJ22220.1| diaminopimelate decarboxylase [Rhodobacter sphaeroides WS8N]
Length = 421
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 212/391 (54%), Gaps = 3/391 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ E+V + D+ TV PFY YS + R+ + +AL L ++ +AIK+ +N
Sbjct: 8 NGSLHAEEVPLSDIAATV-GTPFYCYSAATLERHYRLFTEALTPLPHLVCFAIKSLSNLA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
+L+ L LG G +VS E A AG + +F+G GK E++ +A + G+ NV+S
Sbjct: 67 VLKLLGDLGAGMDVVSAGEYLRARAAGVPGDRIVFSGVGKTREEMRIALEGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG K +KFGI E+
Sbjct: 127 EPEMRALSEVASSMGLRAPIAVRVNPDVDARTHEKIATGKKENKFGIPIERASEVYAEAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+++G H+GS +T+++ F A + + ++RA+G E+ L++GGGLGI Y
Sbjct: 187 ALPG-LEVMGIDVHIGSQLTELEPFEQAYLKVAELTGRLRAEGHEIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P + ++ V + IEPGR + N+ LV+ V VK ++F+++
Sbjct: 246 RSNEAPPLPTDYGALIKRTVGHLGCEIEIEPGRLISGNSGVLVSRVIYVKNGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +L+RPS+Y A+ I ++ A E +DVVGPVCE+ D K R LP G
Sbjct: 306 DAAMNDLVRPSMYGAHHDIVPLAEAAPGTESQPYDVVGPVCETGDTFAKARALPPMAEGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE VR
Sbjct: 366 LVAFRSAGAYGAVMASEYNSRPLVPEVLVRG 396
>gi|417546512|ref|ZP_12197598.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC032]
gi|421666769|ref|ZP_16106857.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC087]
gi|421670709|ref|ZP_16110697.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC099]
gi|400384400|gb|EJP43078.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC032]
gi|410384247|gb|EKP36765.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC099]
gi|410387471|gb|EKP39926.1| diaminopimelate decarboxylase [Acinetobacter baumannii OIFC087]
Length = 416
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 226/400 (56%), Gaps = 9/400 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSLEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 IAVLNVLVKLGAGFDIVSGGELARVLKAGGDASKIVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ I VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRIQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L++VG CH+GS +T+ F DA ++ ID+++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIVGIDCHIGSQLTETKPFVDALDRVIVMIDELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTTHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPRTDTVE-KTWDLVGAICETGDFIGKDRSLALQE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
L V AGAY M+S YN + R E V S +I
Sbjct: 359 NDL-LTVLGAGAYGFVMSSNYNTRGRAAEVMVSGEKSYLI 397
>gi|429733938|ref|ZP_19267988.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans Y4]
gi|429153929|gb|EKX96692.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans Y4]
Length = 416
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 223/388 (57%), Gaps = 10/388 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L E++ V+ + E P Y+YSK + R+ A++ A ++ +A+K+N N IL
Sbjct: 11 LMVENLPVKQLAEEF-GTPLYVYSKAALERHWYAFENAFGNHPHLVCFAVKSNPNIAILN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 193
+ +LG G +VS EL L AG + K +F+G K ++ A + G+ NV+SE +
Sbjct: 70 IMARLGSGFDIVSQGELERVLAAGGEAHKVVFSGVAKSRREIARALEVGIRCFNVESEAE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L I + GK + LR+NPDVD HPY++TG K +KFG+ E+ + P
Sbjct: 130 LLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYKLATTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +++VG CH+GS +T++ F DAA ++ +++++ ++ +L++GGGLG+ Y T
Sbjct: 190 N-IEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P + E + + N L +I+EPGR++ AN LV V +K+N ++NF ++D
Sbjct: 247 ETPPHLTEYAKALWEKLSAFNELEIIVEPGRAITANAGILVTKVEYLKSNESRNFAIVDA 306
Query: 373 SMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG 431
M ++IRP+LY AY +I E+ ++ +I +DVVGP+CE++DFLGK+R+L + G
Sbjct: 307 GMNDMIRPALYQAYMNILEIDRTLAREEKI--YDVVGPICETSDFLGKQRKLAIAE-GDY 363
Query: 432 LVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L AGAY SM+S YN + R E V
Sbjct: 364 LAQRSAGAYGASMSSNYNSRPRTAEVMV 391
>gi|408906616|emb|CCM12194.1| Diaminopimelate decarboxylase [Helicobacter heilmannii ASB1.4]
Length = 641
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 207/365 (56%), Gaps = 13/365 (3%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
+K PFYLY + A+K+A G S+I YA+KAN+N +LE L K G GA VS
Sbjct: 12 DKTPFYLYDLDGVQSAFLAFKEAFRGRKSLICYALKANSNLALLEILAKAGAGADCVSIY 71
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKV 208
E+ AL AG P K IF+G GKL ++ A +EG+ F+NV+S +L I ++ K
Sbjct: 72 EVHRALLAGIAPYKIIFSGVGKLESEIQEALEEGILFLNVESFEELRLIEQIAKEQNTKA 131
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQWFLDAVKAHPNELKLVGAHCHLGS 267
+ +R+NP++DP HPY++TG +KFG+ E +Q F+ A ++ L+ + H H+GS
Sbjct: 132 RISVRVNPNIDPATHPYISTGLWENKFGVEEKEAVQMFMFAKQS--AFLEPIALHFHIGS 189
Query: 268 TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG---AVLPKPRNLID 324
+ ++ A M ++ + A G E+ + +IGGGLG+ Y T A+ L
Sbjct: 190 QLLQLAPLEQAFAKMASFARFLIASGIELKFFDIGGGLGVAYNPTQEPIALESYASALFQ 249
Query: 325 TVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYD 384
+ L +L +I EPGR ++A LV V K+N KNF ++D M + +RP+LY
Sbjct: 250 ATKGL----DLTIICEPGRRIVAEHGILVTKVQYTKSNKRKNFAIVDLGMNDFMRPALYQ 305
Query: 385 AYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSM 444
A + L++P +DA ++ +D+VGP+CESAD K ELP +RG LV GAY SM
Sbjct: 306 ATHPVRLLTP-KEDALVA-YDLVGPICESADCFIKGVELPKLERGDLLVFEKVGAYGASM 363
Query: 445 ASTYN 449
AS YN
Sbjct: 364 ASHYN 368
>gi|299769073|ref|YP_003731099.1| diaminopimelate decarboxylase [Acinetobacter oleivorans DR1]
gi|298699161|gb|ADI89726.1| diaminopimelate decarboxylase [Acinetobacter oleivorans DR1]
Length = 416
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/392 (34%), Positives = 225/392 (57%), Gaps = 9/392 (2%)
Query: 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN 129
+ +G L+ E ++ + + P Y+YSK ++ +A + ++ I +A+K+N+N
Sbjct: 5 RINGVLHAEQCSMEQLAQQF-GTPLYVYSKAAFEKHYLDMDRAFDFIDHQICFAVKSNSN 63
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV 188
+L L KLG G +VSG EL L+AG D +K +F+G GK D+ + G+ NV
Sbjct: 64 LAVLNVLAKLGAGFDIVSGGELARVLKAGGDASKVVFSGLGKTEADIETSLNVGIACFNV 123
Query: 189 DSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+S +L+ + VA+R+ GKK + LR+NPDVD + HPY++TG K +KFGI ++ +
Sbjct: 124 ESYAELDRLQKVAARL-GKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307
+ PN L+++G CH+GS +T+ F DA ++ I++++ G + +++IGGGLG+
Sbjct: 183 YAASLPN-LEIIGIDCHIGSQLTETKPFVDALDRVMLMIEELKKLGINLKHIDIGGGLGV 241
Query: 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
Y P ++++ + L + +EPGRS+ AN L+ V +K +NF
Sbjct: 242 CY--KDETPPSVEEYANSMKPALEKLGLKVYMEPGRSISANAGVLLTKVDLLKPTSHRNF 299
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ID +M +LIRP+LY+A+ I+ V P+ D E +D+VG +CE+ DF+GK+R L +
Sbjct: 300 AIIDAAMNDLIRPALYEAWMDIQPVVPS-SDTEEKTWDLVGAICETGDFIGKDRSLALKE 358
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN + R E V
Sbjct: 359 NDL-LAVLGAGAYGFVMSSNYNTRGRAAEVMV 389
>gi|259415035|ref|ZP_05738957.1| diaminopimelate decarboxylase [Silicibacter sp. TrichCH4B]
gi|259348945|gb|EEW60699.1| diaminopimelate decarboxylase [Silicibacter sp. TrichCH4B]
Length = 421
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/392 (35%), Positives = 211/392 (53%), Gaps = 5/392 (1%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ EDV V ++ TV PFY+YS + R+ + +ALEG + ++ YA+KA +N
Sbjct: 8 DGALHAEDVPVAEIAATV-GTPFYVYSTATLLRHFRLFDEALEGTDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L G G +VS E R A AG K +F+G GK +++ A G+ NV+S
Sbjct: 67 ILKTLAAAGAGMDVVSEGEYRRAKAAGVPGDKIVFSGVGKTADEIRCALSGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++E I + G + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMEVINAVALELGTTAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYAHAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
+ P L+++G H+GS +T++ FR A + +R G ++ L++GGGLGI Y
Sbjct: 187 SLPG-LEVIGIDVHIGSQLTELAPFRLAYQKVAELTQALRDDGHDIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P ++E + + IEPGR + N +V+ V VK ++F+++
Sbjct: 246 RSNEAPPLPVEYGQMIKEELGHLGCEIEIEPGRLVAGNAGVMVSKVIYVKEGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHI-ELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
DG+M +LIRP++Y+AY I +V P P E +D+VGPVCES D K+R++P G
Sbjct: 306 DGAMNDLIRPAMYEAYHDIIPVVEPTP-GLEPKPYDIVGPVCESGDTFAKQRQMPPLGAG 364
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ AGAY MAS YN + PE V
Sbjct: 365 DLVAFRSAGAYGAVMASEYNSRPLIPEVLVHG 396
>gi|170742956|ref|YP_001771611.1| diaminopimelate decarboxylase [Methylobacterium sp. 4-46]
gi|168197230|gb|ACA19177.1| diaminopimelate decarboxylase [Methylobacterium sp. 4-46]
Length = 423
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/407 (34%), Positives = 212/407 (52%), Gaps = 6/407 (1%)
Query: 65 HCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAI 124
H F+ + DG L+ E+V + + E V PFY Y+ + R+ + +A G + ++ +A+
Sbjct: 2 HHFTYR-DGTLHAEEVDLARLAEAVGT-PFYCYASATLERHFRVFAEAFAGDDPLVCFAV 59
Query: 125 KANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184
KAN+N +L L +LG G +VS ELR AL AG + +F+G K ++ +A G+
Sbjct: 60 KANSNQAVLASLARLGAGMDIVSEGELRRALAAGVPGERIVFSGVAKTRAEMAVALDAGI 119
Query: 185 F-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
NV+SE +LE + +R G+ V +R+NPDVD + H ++TG +KFGI + +
Sbjct: 120 LCFNVESEPELEALSEVARARGQTAPVSIRVNPDVDARTHAKISTGKSENKFGIPISRAR 179
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
A P L + G H+GS IT + + +AA L+ + A G + +++ GG
Sbjct: 180 EVYARAAALPG-LAVAGVDMHIGSQITDLAPYDNAASLLAELARDLMAAGHRLHHIDFGG 238
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGI Y A P P +R L + E GR + N LV V VK
Sbjct: 239 GLGIPYRDDNAPPPDPAAFAAVIRPHFRPLGLRPVFEIGRMIAGNAGILVTRVVYVKEGE 298
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERE 422
++F+++D M +LIRP+LY+AY + V P P+ ++ DVVGPVCES D+L RE
Sbjct: 299 GRSFVIVDAGMNDLIRPTLYEAYHALRPVRQPDPEAPRLTA-DVVGPVCESGDYLALGRE 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
+P G L V AGAY A TYN + PE VR ++ P
Sbjct: 358 MPAVAPGDLLAVMSAGAYGAVQAGTYNTRRLVPEVLVRGAAHAVVRP 404
>gi|194336708|ref|YP_002018502.1| diaminopimelate decarboxylase [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309185|gb|ACF43885.1| diaminopimelate decarboxylase [Pelodictyon phaeoclathratiforme
BU-1]
Length = 417
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/389 (34%), Positives = 212/389 (54%), Gaps = 12/389 (3%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L C+DV+++++ P ++ S+ + + +A++ A E L Y++KAN N ++
Sbjct: 14 LCCDDVKLEELAANF-GTPLFVTSRRSVIESYKAFECAFEALPHFTCYSVKANYNLSVIR 72
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL 194
L +LGCG + S EL AL++G P K IF G GK +++V A Q GV + + +E L
Sbjct: 73 TLAELGCGCDVNSAGELYRALQSGVSPDKIIFAGVGKREDEIVYALQSGVLM-LKAE-SL 130
Query: 195 ENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251
+ RIAG+ +V +RINP+V + HPY+ TG+ KFGI +L +
Sbjct: 131 SELRAIDRIAGELGLTASVAIRINPNVTAETHPYITTGDSKEKFGIDEAELSTVFSLLSR 190
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN +KLVG H+GS I + + A V ++ R GF +++L+IGGG + Y
Sbjct: 191 LPN-IKLVGLDMHIGSQIFDPEYYVAATVKLLAIFKASRELGFAIEFLDIGGGFPVTYDP 249
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT-KNFIVI 370
P + + + ++L ++ +I EPGR L+AN L+ + K+N T K F V+
Sbjct: 250 LKPATPI-EHFAEKLVPMLLPLDVKVIFEPGRYLVANASVLLTRILYKKSNHTGKQFFVV 308
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M ELIRP+LY ++ ++ V+ ++ DVVGP+CES+DF + R + + G
Sbjct: 309 DAGMTELIRPALYQSHHEVQSVTFHEEEVIA---DVVGPICESSDFFARHRAIGAAEEGE 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L V AGAY M+S YN ++RP E V
Sbjct: 366 LLAVMSAGAYAAVMSSNYNGRLRPAEVLV 394
>gi|315497547|ref|YP_004086351.1| diaminopimelate decarboxylase [Asticcacaulis excentricus CB 48]
gi|315415559|gb|ADU12200.1| diaminopimelate decarboxylase [Asticcacaulis excentricus CB 48]
Length = 438
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 217/410 (52%), Gaps = 16/410 (3%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL---EGLNS------IIGY 122
DG ++ E V ++++ E V P Y+YS R+ + + QAL + L S +I Y
Sbjct: 8 DGEMHAEGVSIRELAERV-GTPLYVYSSATFERHFQVFSQALWAQDALQSPKNEAPLIAY 66
Query: 123 AIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182
A KAN+N +L+ L + G GA VS E+R AL AG P + +F+G GK E++ A +
Sbjct: 67 ATKANSNLAVLQTLAEQGAGADTVSEGEIRKALTAGIPPERIVFSGVGKTDEEMAFALKT 126
Query: 183 GVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241
G++ +NV+S+ +LE + + G +++RINP V H + TG KFG+ +
Sbjct: 127 GIYQLNVESKPELERLSHVAASLGLVAPIVIRINPGVGAGGHAKITTGGAKDKFGVSARE 186
Query: 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI 301
A PN + +G CH+GS IT + + A M ++ ++RA G V+ L++
Sbjct: 187 AIALYGQAAADPN-IAPMGIACHIGSQITDLAPMQAAFSKMRGWVQELRAGGLSVERLDL 245
Query: 302 GGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV-- 359
GGGLG+ Y++ + P P + V V + + EPGR + AN LV+ V +
Sbjct: 246 GGGLGVPYFNM-SEPPSPEDFAQMVALTVGNLGVRYTFEPGRLIAANAGILVSRVIHIHE 304
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGK 419
+ + + F+V+D +M +LIRP++YDAY I V A Q E + +DVVGPVCE+ D +
Sbjct: 305 REDSGQKFLVVDAAMNDLIRPAMYDAYHDIRPVV-AVQTNETATYDVVGPVCETGDTFTR 363
Query: 420 ERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469
R+LP G + AGAY M S YN + PE VR ++ P
Sbjct: 364 GRDLPALKAGDLVAFMSAGAYGAVMGSEYNSRPLAPEVLVRDTDWAVVRP 413
>gi|399926682|ref|ZP_10784040.1| diaminopimelate decarboxylase [Myroides injenensis M09-0166]
Length = 389
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 207/382 (54%), Gaps = 19/382 (4%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E+ P Y Y P + VE K + + + I YAIKANNN KIL+ + LG GA VSG
Sbjct: 12 EQTPLYYYDLPLLKETVEVAKNSADRFDYTIHYAIKANNNPKILKEISSLGLGADCVSGK 71
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E+ LA+ GFD +F G GK ++ +A Q + NV+S +LE I + K
Sbjct: 72 EIELAIENGFDSHSIVFAGVGKTDREISIALQNNILAFNVESVQELEVIASIAESLSTKA 131
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ LRINP+VD + H Y+ TG +KFGI +L L +K + L+LVG H H+GS
Sbjct: 132 CIALRINPNVDAKTHHYITTGLDENKFGIMMHELDNCLAIIK-NSTSLELVGLHFHVGSQ 190
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTV-- 326
IT +++++ + + + + +G+ V LN+GGGLGI+Y P ++++
Sbjct: 191 ITDLNVYKRLCIKVNEWNNYFYERGYNVPILNLGGGLGINYCE-----PDEESIVNFSNF 245
Query: 327 -----RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPS 381
+ L L + E GRSL+AN LV+ V +K KNF ++D M EL+RP+
Sbjct: 246 FYLFHQFLELREGQKVHFELGRSLVANCGTLVSRVLYIKNGIKKNFAILDAGMTELLRPA 305
Query: 382 LYDAYQHIEL-----VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHD 436
LY AY +E ++ ++ ++D+VGP+CES+D GK+ LP +RG + +
Sbjct: 306 LYQAYHKVEKWEAGNIAEETNESNNIRYDIVGPICESSDCFGKDVILPKLERGDLIAIRS 365
Query: 437 AGAYCMSMASTYNLKMRPPEYW 458
AGAY MAS YNL+ ++
Sbjct: 366 AGAYGEVMASRYNLRQELNYFY 387
>gi|407714952|ref|YP_006835517.1| diaminopimelate decarboxylase [Burkholderia phenoliruptrix BR3459a]
gi|407237136|gb|AFT87335.1| diaminopimelate decarboxylase [Burkholderia phenoliruptrix BR3459a]
Length = 420
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 216/392 (55%), Gaps = 11/392 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V + E P Y+YS+ +T AY A G + + A+KAN+N
Sbjct: 10 DGVLHAEGVSAVSLAEQF-GTPLYVYSRAALTDAWNAYAGACAGRRASVHVAVKANSNLA 68
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDS 190
+L +LG G +VSG EL L AG +F+G GK +++ A GV NV+S
Sbjct: 69 VLNVFARLGAGFDIVSGGELARVLAAGGKAENTVFSGVGKHADEMREALAAGVKCFNVES 128
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK V LR+NPDVD + HPY++TG K++KFG+ E + A
Sbjct: 129 IPELDRLNAVAAQMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQAAA 188
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A N L++VG CH+GS IT+V + DA ++ +++I G + ++++GGGLGI Y
Sbjct: 189 AMTN-LEVVGIDCHIGSQITEVAPYLDAVDKLLELVEQIEQDGLTIRHIDVGGGLGITY- 246
Query: 311 HTGAVLPKPRNLIDTVRELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
P + + TV + + +R + + EPGRSL+ N L+ V +K KNF
Sbjct: 247 -DDETPPDIGDFVRTVLDRIEARGHGHREVYFEPGRSLVGNAGVLLTRVEFLKPGAEKNF 305
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++D +M +L RP++Y+AY I+ V A + +DVVGPVCES D+LG+ER L + +
Sbjct: 306 AIVDAAMNDLARPAMYEAYHVIDAVVQREVPAHV--YDVVGPVCESGDWLGRER-LLSVE 362
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L + AGAY M+S YN + R E V
Sbjct: 363 PGDLLAIRSAGAYGFVMSSNYNTRPRAAEVMV 394
>gi|149202882|ref|ZP_01879853.1| diaminopimelate decarboxylase [Roseovarius sp. TM1035]
gi|149143428|gb|EDM31464.1| diaminopimelate decarboxylase [Roseovarius sp. TM1035]
Length = 421
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/389 (34%), Positives = 211/389 (54%), Gaps = 3/389 (0%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
+G L+ EDV + ++ E V PFY YS ++R+ + +AL G++ ++ YA+KA +N
Sbjct: 8 NGVLHAEDVPLSEIAEAV-GTPFYCYSTATLSRHFRLFDEALAGMDHLVCYAMKAASNQA 66
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190
IL+ L LG G +VSG E A AG + +F+G GK +++ +A G+ NV+S
Sbjct: 67 ILKTLAGLGAGMDVVSGGEYARARAAGVPGERIVFSGVGKTRDEMRMALIGGIRQFNVES 126
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
E ++ + + G + + +R+NPDVD + H +ATG +KFGI + +
Sbjct: 127 EPEMAVLNAVALELGLRAPITIRVNPDVDAKTHAKIATGKSENKFGIPIARAREVYAQAA 186
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
A P L+++G H+GS +T++ FR A + +RA G ++ L++GGGLGI Y
Sbjct: 187 ALPG-LEVIGIDVHIGSQLTELAPFRLAYEKVAELTQVLRADGHDIRRLDLGGGLGIPYT 245
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+ P P +RE++ + IEPGR + N LV+ V VK+ ++F+++
Sbjct: 246 RSNEAPPLPTEYGALIREVLGHLGCEIEIEPGRLIAGNAGILVSQVIYVKSGEGRDFLIL 305
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D +M +LIRP++YDA+ I + A E +DVVGPVCES D K R LP G
Sbjct: 306 DAAMNDLIRPAMYDAHHDIVPLHEAAPGVEQRPYDVVGPVCESGDTFAKGRMLPPLAEGD 365
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ AGAY M+S YN + PE V
Sbjct: 366 LVAFRSAGAYGAVMSSEYNTRPLVPEVLV 394
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,419,620,270
Number of Sequences: 23463169
Number of extensions: 320851543
Number of successful extensions: 716086
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4996
Number of HSP's successfully gapped in prelim test: 3208
Number of HSP's that attempted gapping in prelim test: 687312
Number of HSP's gapped (non-prelim): 8738
length of query: 471
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 325
effective length of database: 8,933,572,693
effective search space: 2903411125225
effective search space used: 2903411125225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)