BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012098
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P3E|A Chain A, Crystal Structure Of Aq1208 From Aquifex Aeolicus
pdb|2P3E|B Chain B, Crystal Structure Of Aq1208 From Aquifex Aeolicus
Length = 420
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 237/391 (60%), Gaps = 8/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++++ +T P Y+YS I EAY++A +++I YA+KAN N
Sbjct: 15 DGELFIEGVSLKELAQTF-GTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPH 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-QEGVFVNVDS 190
+++ L +LG GA +VSG EL LA +AG P + ++ G GK ++L A E + NV+S
Sbjct: 72 LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK + +R+NPDVDP+ HPY+ATG + SKFG+ + Q +
Sbjct: 132 RQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS 191
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
N L++VG HCH+GS I + +R+A +V+ + + +GF++ YL+IGGGLGI Y
Sbjct: 192 KLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYK 250
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P++L D +++L+ + +I+EPGRS++ N L+ V +K G+K+FI++
Sbjct: 251 PEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIV 309
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRPS+Y+AY HI V + ++ D+VGP+CE+ DFL +RE+ RG
Sbjct: 310 DAGMNDLIRPSIYNAYHHIIPVETKERKKVVA--DIVGPICETGDFLALDREIEEVQRGE 367
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY +M+S YN++ R E V +
Sbjct: 368 YLAVLSAGAYGFAMSSHYNMRPRAAEVLVEN 398
>pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 251 bits (641), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 28 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 86
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 87 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 146
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 147 FNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQV 206
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 207 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 265
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 266 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 323
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 324 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 381
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 382 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 415
>pdb|3VAB|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
pdb|3VAB|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From
Brucella Melitensis Bound To Plp
Length = 443
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/404 (35%), Positives = 225/404 (55%), Gaps = 5/404 (1%)
Query: 54 AKSQTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQAL 113
A++Q + V H F + +G L+ E+V + ++ + V PFY+YS+ I R+ + A
Sbjct: 14 AQTQGPGSMVNH-FEYR-NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAF 70
Query: 114 EGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLL 173
+++++ YA+ AN+N +L L KLG GA VS E+R AL AG + +F+G GK
Sbjct: 71 ADMDTLVTYALXANSNQAVLTALAKLGAGADTVSQGEIRRALAAGIPANRIVFSGVGKTP 130
Query: 174 EDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232
++ A + G++ NV+SE +LE + + AGK V LRINPDVD + H ++TG
Sbjct: 131 REMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSE 190
Query: 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
+KFGI +K + + P L +VG H+GS I ++ F +A LM + +++A
Sbjct: 191 NKFGIPRDKARAAYARAASLPG-LNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 249
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCL 352
G + ++++GGGLGI Y P P V + + L + EPGR ++ N L
Sbjct: 250 GHNIRHVDVGGGLGIPYRTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLL 309
Query: 353 VNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCE 412
V V VK KNF+++D +M +LIRP+LYDA+ I V +A + D VGPVCE
Sbjct: 310 VTEVIFVKEGDAKNFVIVDAAMNDLIRPTLYDAFHDIRPVIMPNDNAPRIRADFVGPVCE 369
Query: 413 SADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
+ D+LG +RE+ P G + + GAY ++STYN ++ PE
Sbjct: 370 TGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPE 413
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 219/387 (56%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQI----TRNVEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI R +EA+K+ E G I+ YA KAN N I
Sbjct: 20 DAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRL 79
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
L KLGCGA +VSG EL +A + K +FNGN K E++++ + + NVDS +L
Sbjct: 80 LAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISEL 139
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--H 252
I ++ G+ NV RINP+V+P+ HP ++TG K +KFG+ E + A+K
Sbjct: 140 ILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALE 198
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ +VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLGI YY
Sbjct: 199 MEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKD 258
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+ P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 259 KQI-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKW 317
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++ID M +++RP++Y+AY HI + + E+ + G +CES+D G++REL +
Sbjct: 318 VMIDAGMNDMMRPAMYEAYHHI-INCKVKNEKEV--VSIAGGLCESSDVFGRDRELDKVE 374
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 375 VGDVLAIFDVGAYGISMANNYNARGRP 401
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 218/387 (56%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQI----TRNVEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI R +EA+K+ E G I+ YA AN N I
Sbjct: 20 DAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYXANANLAITRL 79
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
L KLGCGA +VSG EL +A + K +FNGN K E++++ + + NVDS +L
Sbjct: 80 LAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISEL 139
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--H 252
I ++ G+ NV RINP+V+P+ HP ++TG K +KFG+ E + A+K
Sbjct: 140 ILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALE 198
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ +VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLGI YY
Sbjct: 199 MEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKD 258
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+ P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 259 KQI-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKW 317
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++ID M +++RP++Y+AY HI + + E+ + G +CES+D G++REL +
Sbjct: 318 VMIDAGMNDMMRPAMYEAYHHI-INCKVKNEKEV--VSIAGGLCESSDVFGRDRELDKVE 374
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 375 VGDVLAIFDVGAYGISMANNYNARGRP 401
>pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From
Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 221 bits (562), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 206/361 (57%), Gaps = 7/361 (1%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K PFYLY +I + YK+A +G S+I YA+KAN+N IL L L GA VS E
Sbjct: 32 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGE 91
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
++ AL+AG P + +F+G GK ++ A + + F+NV+S +L+ I ++ G K
Sbjct: 92 IQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKAR 151
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS
Sbjct: 152 ISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAF--LEPVSVHFHIGSQ 209
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
+ ++ +A+ + + A G ++ + ++GGG+G+ Y + + K + +
Sbjct: 210 LLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILN 267
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ +L +I EPGRS++A + L+ V K K F+++D M + +RPSLY A
Sbjct: 268 ALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHA 327
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I +++P+ + EIS DVVGPVCES+D K+ LP + G + + GAY SMAS Y
Sbjct: 328 IRVITPS-KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQY 386
Query: 449 N 449
N
Sbjct: 387 N 387
>pdb|3C5Q|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase (I148l
Mutant) From Helicobacter Pylori Complexed With L-Lysine
Length = 425
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 206/361 (57%), Gaps = 7/361 (1%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K PFYLY +I + YK+A +G S+I YA+KAN+N IL L L GA VS E
Sbjct: 32 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGE 91
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
++ AL+AG P + +F+G GK ++ A + + F+NV+S +L+ I ++ G K
Sbjct: 92 IQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKAR 151
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS
Sbjct: 152 ISIRINPNIDAKTHPYLSTGLKENKFGVGEKEALEMFLWAKKSAF--LEPVSVHFHIGSQ 209
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
+ ++ +A+ + + A G ++ + ++GGG+G+ Y + + K + +
Sbjct: 210 LLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILN 267
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ +L +I EPGRS++A + L+ V K K F+++D M + +RPSLY A
Sbjct: 268 ALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHA 327
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I +++P+ + EIS DVVGPVCES+D K+ LP + G + + GAY SMAS Y
Sbjct: 328 IRVITPS-KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQY 386
Query: 449 N 449
N
Sbjct: 387 N 387
>pdb|2YXX|A Chain A, Crystal Structure Analysis Of Diaminopimelate
Decarboxylate (Lysa)
Length = 386
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 200/373 (53%), Gaps = 26/373 (6%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + + + K+ EG+N + +A+KANNN +L+ LR+ G G +V+ EL
Sbjct: 14 PTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGXDVVTKGELL 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
A AG ++NGNGK + +E V VNVDS E + + + V
Sbjct: 74 AAKLAGVPSHTVVWNGNGKSRDQXEHFLREDVRIVNVDS---FEEXEIWRELNPEGVEYF 130
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP+VD + HP+++TG K KFGI E L F + ++ + G H H+GS IT+
Sbjct: 131 IRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFXERFRS----XNIRGLHVHIGSQITR 186
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV- 330
V+ F +A +V ++ GFE +NIGGG GI+Y +G L + + RE V
Sbjct: 187 VEPFVEAFSKVVRASER---YGFE--EINIGGGWGINY--SGEELD-----LSSYREKVV 234
Query: 331 --LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
L R +I+E GR ++A + L+ V VK K F+V+DG LIRP+LY AY
Sbjct: 235 PDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGXNVLIRPALYSAYHR 294
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I ++ ++ + DVVGP+CES D + +RELP + G + V +AGAY + ++ Y
Sbjct: 295 IFVLGKQGKEX---RADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTXSNNY 351
Query: 449 NLKMRPPEYWVRS 461
N RP E VR
Sbjct: 352 NSTTRPAEVLVRE 364
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 180/383 (46%), Gaps = 34/383 (8%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P ++Y I R + A KQ ++ +A KA +N IL +R+ G VS E+
Sbjct: 27 PVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIE 81
Query: 153 LALRAGFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKV 208
AL AG++P +F + L ++ + VN S L+ + S G +V
Sbjct: 82 RALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVS--PGHRV 139
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
LR+NP TG +NSK GI L LD ++ H L+LVG H H+GS
Sbjct: 140 --WLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRH--HLQLVGIHMHIGSG 195
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTV 326
+ + + ++ I+ G ++ ++ GGGL + Y + L +
Sbjct: 196 VDYAHLEQVCGAMVRQVIEF----GQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAA 251
Query: 327 RELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
RE + L + L IEPGR L+A + L+ V VK G+++F+++D +L+RP++Y
Sbjct: 252 REQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMY 311
Query: 384 DAYQHIELVSPAPQDAEIS---KFDVVGPVCESADFLGKE-------RELPTPDRGAGLV 433
+Y HI ++ + E + + V GP+CES D ++ R LP G LV
Sbjct: 312 GSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLV 371
Query: 434 VHDAGAYCMSMASTYNLKMRPPE 456
+HD GAY SM+S YN + PE
Sbjct: 372 LHDTGAYGASMSSNYNSRPLLPE 394
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 22/360 (6%)
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G + + YA KA ++ + + G + +G EL +AL A F P + +GN K +
Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVS 121
Query: 175 DLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233
+L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++
Sbjct: 122 ELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQ 181
Query: 234 KFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 291
KFG+ + AV+ + L+LVG H H+GS I VD F AA ++ + +
Sbjct: 182 KFGLSVAS-GAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVG 240
Query: 292 Q-----GFEVDYLNIGGGLGIDYYHT------GAVLPKPRNLIDTVRELVLSRNLNLIIE 340
+ ++ +++GGGLGI Y + + K ++ V L++E
Sbjct: 241 EFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVE 300
Query: 341 PGRSLIANTCCLVNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA 395
PGR++ + V VK + ++ +DG M++ IR +LY A + LVS
Sbjct: 301 PGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLVSRV 360
Query: 396 PQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
DA +VG CES D + ++ +P R LV V GAYC S++S YN+ RP
Sbjct: 361 -SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRP 419
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/328 (29%), Positives = 160/328 (48%), Gaps = 22/328 (6%)
Query: 147 SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAG 205
+G EL +AL A F P + +GN K + +L A + GV + VDS ++E + + AG
Sbjct: 96 TGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAG 155
Query: 206 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHC 263
+VL+R+ V+ H +++T +++ KFG+ + AV+ + L+LVG H
Sbjct: 156 IVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVAS-GAAMAAVRRVFATDHLRLVGLHS 214
Query: 264 HLGSTITKVDIFRDAAVLMVNYIDKIRAQ-----GFEVDYLNIGGGLGIDYYHT------ 312
H+GS I VD F AA ++ + + + ++ +++GGGLGI Y +
Sbjct: 215 HIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPI 274
Query: 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK-----TNGTKNF 367
+ K ++ V L++EPGR++ + V VK + +
Sbjct: 275 AELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRY 334
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
+ +DG M++ IR +LY A + LVS DA +VG CES D + ++ +P
Sbjct: 335 VSVDGGMSDNIRTALYGAQYDVRLVSRV-SDAPPVPARLVGKHCESGDIIVRDTWVPDDI 393
Query: 428 RGAGLV-VHDAGAYCMSMASTYNLKMRP 454
R LV V GAYC S++S YN+ RP
Sbjct: 394 RPGDLVAVAATGAYCYSLSSRYNMVGRP 421
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKW|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 167/359 (46%), Gaps = 20/359 (5%)
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G + + YA KA ++ + + G + +G EL +AL A F P + +GN K +
Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVS 121
Query: 175 DLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233
+L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++
Sbjct: 122 ELTAAVKAGVGHIVVDSXTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQ 181
Query: 234 KFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
KFG+ + L+LVG H H+GS I VD F AA ++ + + +
Sbjct: 182 KFGLSVASGAAXAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGE 241
Query: 293 -----GFEVDYLNIGGGLGIDYYHTGAVLP------KPRNLIDTVRELVLSRNLNLIIEP 341
++ +++GGGLGI Y + P K ++ V L++EP
Sbjct: 242 FGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVEP 301
Query: 342 GRSLIANTCCLVNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAP 396
GR++ + V VK + ++ +DG ++ IR +LY A + LVS
Sbjct: 302 GRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGXSDNIRTALYGAQYDVRLVSRV- 360
Query: 397 QDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
DA +VG CES D + ++ +P R LV V GAYC S++S YN RP
Sbjct: 361 SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNXVGRP 419
>pdb|2J66|A Chain A, Structural Characterisation Of Btrk Decarboxylase From
Butirosin Biosynthesis
Length = 428
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 171/379 (45%), Gaps = 22/379 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGY--AIKANNNYKILEHLRKLGCGAVLVSGNE 150
PFYLY I + Y+Q N I + ++KANNN + + R+ G G + S E
Sbjct: 18 PFYLYDGDFIEAH---YRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGE 74
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVN 209
L LA AGF IF+G GK +L +A Q G++ + +S +L I + K
Sbjct: 75 LALARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTAR 134
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
V +RINPD + G +FG+ L +DAV++ K +G H + G+
Sbjct: 135 VAIRINPDKSFGSTA-IKMGGVPRQFGMDESMLDAVMDAVRS-LQFTKFIGIHVYTGTQN 192
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAVL---PKPRNLIDT 325
D ++ V+ I + G + +N+GGG G+ Y+ L R + D
Sbjct: 193 LNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY 252
Query: 326 VRELVLSR--NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM----AELIR 379
V+E +R IIE GR L+A V V K + + F+++DG M A R
Sbjct: 253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFR 312
Query: 380 PSLYDAYQHIELVSPAPQDA---EISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHD 436
+ +E + P +D+ E+ K + GP+C D LGK+ +P G + V +
Sbjct: 313 GRSMRSNYPMEYI-PVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLN 371
Query: 437 AGAYCMSMASTYNLKMRPP 455
+GAY +S + + L P
Sbjct: 372 SGAYGLSFSPVHFLGHPTP 390
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/366 (23%), Positives = 164/366 (44%), Gaps = 31/366 (8%)
Query: 94 FYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRL 153
F+++ + + VE +K+ + + +A+K N +++ L +LGCG S NE++
Sbjct: 28 FWIFDTEGVEKAVERWKKNMPTVRPC--FAVKCNPEPHLVKLLGELGCGFDCASLNEIKE 85
Query: 154 ALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLL 212
L GF+P ++ K L+ A+ G+ VDS +++ I + K+ +++
Sbjct: 86 VLDLGFNPEDITYSQTFKPYNQLIEASHLGINHTIVDSIDEVQKIAKYA----PKMGIMI 141
Query: 213 RINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKV 272
RI + H + KFG+ +++++ L +K L L G H H+GS
Sbjct: 142 RIMENDTSAGHVF------GEKFGLHDDEVEIVLKEIK--DKGLNLDGVHFHVGSDSHNS 193
Query: 273 DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG--IDYYHTGAVLPKPRNLIDTVRELV 330
++F A N + G + ++IGGG + A + K T++EL
Sbjct: 194 EVFTKALTKARNTVTLAEQFGMKPYLIDIGGGFSQVAPFEEFAATIEK------TIKELE 247
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKT---NGTKN--FIVIDGSMAELIRPSLYDA 385
I EPGR + +N LV+ + G + NG K + DG ++
Sbjct: 248 FPERTRFIAEPGRYMASNAFHLVSSLHGKRVRIQNGKKQIEYTSGDGLHGSFGCCIWFEK 307
Query: 386 YQHIELVS-PAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAG-LVVHDAGAYCMS 443
+ E ++ ++ ++ + + GP C +D + + ELP + G L+ + GAY +S
Sbjct: 308 QKSCECITQKVNENTKMYESIIYGPSCNGSDKVATQ-ELPEMEPGKDWLLFPNMGAYTIS 366
Query: 444 MASTYN 449
MA+ +N
Sbjct: 367 MATNFN 372
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 162/403 (40%), Gaps = 59/403 (14%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E PF++ I R E +K+ L + YA+K N+++++L L LG G S
Sbjct: 36 EGDPFFVADLGDIVRKHETWKKCLPRVTPF--YAVKCNDDWRVLGTLAALGTGFDCASNT 93
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E++ G P K I+ K + + A GV V D +LE + K
Sbjct: 94 EIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKA 149
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
++LRI+ D +A + KFG + E ++ L+ +A + + G H+GS
Sbjct: 150 KMVLRISTD------DSLARCRLSVKFGAKVEDCRFILE--QAKKLNIDVTGVSFHVGSG 201
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN------- 321
T F A D GF + L+IGGG P R+
Sbjct: 202 STDASTFAQAISDSRFVFDMGTELGFNMHILDIGGG-----------FPGTRDAPLKFEE 250
Query: 322 ---LIDTVRELVLSRNLNLII--EPGRSLIANTCCL-VNHVTGVKTNGTKNFIVIDGSMA 375
+I+ E +L L I EPGR +A+ L VN + T G + + G+ A
Sbjct: 251 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKAVTPGVQTDV---GAHA 307
Query: 376 E--------LIRPSLYDAYQHI----ELVSPAPQ-----DAEISKFDVVGPVCESADFLG 418
E + +Y ++ I +V P PQ + ++ V GP C+ D +
Sbjct: 308 ESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIV 367
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ LP G L+ D GAY + S++N P Y+V S
Sbjct: 368 ERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 410
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 160/400 (40%), Gaps = 53/400 (13%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E PF++ I R E +K+ L + YA+K N+++++L L LG G S
Sbjct: 36 EGDPFFVADLGDIVRKHETWKKCLPRVTPF--YAVKCNDDWRVLGTLAALGTGFDCASNT 93
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E++ G P K I+ K + + A GV V D +LE + K
Sbjct: 94 EIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKA 149
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
++LRI+ D +A + KFG + E ++ L+ +A + + G H+GS
Sbjct: 150 KMVLRISTD------DSLARCRLSVKFGAKVEDCRFILE--QAKKLNIDVTGVSFHVGSG 201
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN------- 321
T F A D GF + L+IGGG P R+
Sbjct: 202 STDASTFAQAISDSRFVFDMGTELGFNMHILDIGGG-----------FPGTRDAPLKFEE 250
Query: 322 ---LIDTVRELVLSRNLNLII--EPGRSLIANTCCLVNHVT------GVKTNGTKNFIVI 370
+I+ E +L L I EPGR +A+ L +V GV+T+ +
Sbjct: 251 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESN 310
Query: 371 DGSMAELIRPSLYDAYQHI----ELVSPAPQ-----DAEISKFDVVGPVCESADFLGKER 421
S + +Y ++ I +V P PQ + ++ V GP C+ D + +
Sbjct: 311 AQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERY 370
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
LP G L+ D GAY + S++N P Y+V S
Sbjct: 371 YLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 410
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 160/400 (40%), Gaps = 53/400 (13%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E PF++ I R E +K+ L + YA+K N+++++L L LG G S
Sbjct: 36 EGDPFFVADLGDIVRKHETWKKCLPRVTPF--YAVKCNDDWRVLGTLAALGTGFDCASNT 93
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E++ G P K I+ K + + A GV V D +LE + K
Sbjct: 94 EIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKA 149
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
++LRI+ D +A + KFG + E ++ L+ +A + + G H+GS
Sbjct: 150 KMVLRISTD------DSLARCRLSVKFGAKVEDCRFILE--QAKKLNIDVTGVSFHVGSG 201
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN------- 321
T F A D GF + L+IGGG P R+
Sbjct: 202 STDASTFAQAISDSRFVFDMGTELGFNMHILDIGGG-----------FPGTRDAPLKFEE 250
Query: 322 ---LIDTVRELVLSRNLNLII--EPGRSLIANTCCLVNHVT------GVKTNGTKNFIVI 370
+I+ E +L L I EPGR +A+ L +V GV+T+ +
Sbjct: 251 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESN 310
Query: 371 DGSMAELIRPSLYDAYQHI----ELVSPAPQ-----DAEISKFDVVGPVCESADFLGKER 421
S + +Y ++ I +V P PQ + ++ V GP C+ D + +
Sbjct: 311 AQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERY 370
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
LP G L+ D GAY + S++N P Y+V S
Sbjct: 371 YLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 410
>pdb|2TOD|A Chain A, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|B Chain B, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|C Chain C, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
pdb|2TOD|D Chain D, Ornithine Decarboxylase From Trypanosoma Brucei K69a
Mutant In Complex With Alpha-Difluoromethylornithine
Length = 425
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 159/400 (39%), Gaps = 53/400 (13%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E PF++ I R E +K+ L + YA+ N+++++L L LG G S
Sbjct: 36 EGDPFFVADLGDIVRKHETWKKCLPRVTPF--YAVACNDDWRVLGTLAALGTGFDCASNT 93
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E++ G P K I+ K + + A GV V D +LE + K
Sbjct: 94 EIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKA 149
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
++LRI+ D +A + KFG + E ++ L+ +A + + G H+GS
Sbjct: 150 KMVLRISTD------DSLARCRLSVKFGAKVEDCRFILE--QAKKLNIDVTGVSFHVGSG 201
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN------- 321
T F A D GF + L+IGGG P R+
Sbjct: 202 STDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGF-----------PGTRDAPLKFEE 250
Query: 322 ---LIDTVRELVLSRNLNLII--EPGRSLIANTCCLVNHVT------GVKTNGTKNFIVI 370
+I+ E +L L I EPGR +A+ L +V GV+T+ +
Sbjct: 251 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESN 310
Query: 371 DGSMAELIRPSLYDAYQHI----ELVSPAPQ-----DAEISKFDVVGPVCESADFLGKER 421
S + +Y ++ I +V P PQ + ++ V GP C+ D + +
Sbjct: 311 AQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERY 370
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
LP G L+ D GAY + S++N P Y+V S
Sbjct: 371 YLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 410
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 166/403 (41%), Gaps = 37/403 (9%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I+ L
Sbjct: 25 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSRAIVSTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
+G G S E++L G + I+ K + + AA GV + DSE +L +
Sbjct: 83 IGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + + L+ +A +
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELNID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHTGAVL 316
++G H+GS T D F A D GF + L+IGGG G + T
Sbjct: 191 VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSE--DTKLKF 248
Query: 317 PKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKT------------- 361
+ ++I+ + + + +I EPGR +A+ L ++ KT
Sbjct: 249 EEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDE 308
Query: 362 --NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADFLG 418
T + V DG LYD L+ P+ D + + GP C+ D +
Sbjct: 309 SNEQTFMYYVNDGVYGSF-NCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIV 367
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 368 ERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS 410
>pdb|2OO0|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
pdb|2OO0|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy-1-Aminopropane
Length = 471
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 164/407 (40%), Gaps = 45/407 (11%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I++ L
Sbjct: 35 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSKAIVKTLAA 92
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 93 TGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKV 152
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + L+ +A +
Sbjct: 153 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLRTSRLLLE--RAKELNID 200
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL------GIDYYH 311
+VG H+GS T + F A D GF + L+IGGG + +
Sbjct: 201 VVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEE 260
Query: 312 -TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK---------- 360
TG + P + + +I EPGR +A+ L ++ K
Sbjct: 261 ITGVINPALDKYFPS------DSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSD 314
Query: 361 -----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESA 414
+ T + V DG LYD L+ P+ D + + GP C+
Sbjct: 315 DEDESSEQTFMYYVNDGVYGSF-NCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGL 373
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
D + + +LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 374 DRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMS 420
>pdb|2ON3|A Chain A, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
pdb|2ON3|B Chain B, A Structural Insight Into The Inhibition Of Human And
Leishmania Donovani Ornithine Decarboxylases By
3-Aminooxy- 1-Aminopropane
Length = 461
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 164/407 (40%), Gaps = 45/407 (11%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I++ L
Sbjct: 25 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSKAIVKTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 83 TGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + L+ +A +
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLRTSRLLLE--RAKELNID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL------GIDYYH 311
+VG H+GS T + F A D GF + L+IGGG + +
Sbjct: 191 VVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEE 250
Query: 312 -TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK---------- 360
TG + P + + +I EPGR +A+ L ++ K
Sbjct: 251 ITGVINPALDKYFPS------DSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSD 304
Query: 361 -----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESA 414
+ T + V DG LYD L+ P+ D + + GP C+
Sbjct: 305 DEDESSEQTFMYYVNDGVYGSF-NCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGL 363
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
D + + +LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 364 DRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMS 410
>pdb|2NVA|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
pdb|2NVA|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase Bound To Agmatine
Length = 372
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 137/338 (40%), Gaps = 30/338 (8%)
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
YA+K NN+ +L+ + S +E++ ++ G P++ IF K ++DL+ A
Sbjct: 45 YAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKD 104
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+GV DS F+L+ I ++LRI D DP AT +KFG +
Sbjct: 105 QGVDIATFDSSFELDKI----HTYHPNCKMILRIRCD-DPN-----ATVQLGNKFGANED 154
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+++ L+ K +++++G H+GS + + A ++ + G + L+
Sbjct: 155 EIRHLLEYAKQL--DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILD 212
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
IGGGL D + D +++ + ++ EPGR + L V G +
Sbjct: 213 IGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKR 272
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHI---------ELVSPAPQDAEISKFDVVGPVC 411
V DG S Y + ++ +L+ P D E + G C
Sbjct: 273 --------VRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTC 324
Query: 412 ESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
+ D + LP G + GAY + +++N
Sbjct: 325 DGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFN 362
>pdb|2NV9|A Chain A, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|B Chain B, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|C Chain C, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|D Chain D, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|E Chain E, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|F Chain F, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|G Chain G, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
pdb|2NV9|H Chain H, The X-Ray Crystal Structure Of The Paramecium Bursaria
Chlorella Virus Arginine Decarboxylase
Length = 372
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 137/338 (40%), Gaps = 30/338 (8%)
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
YA+K NN+ +L+ + S +E++ ++ G P++ IF K ++DL+ A
Sbjct: 45 YAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTMKTIDDLIFAKD 104
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
+GV DS F+L+ I ++LRI D DP V GN KFG +
Sbjct: 105 QGVDIATFDSSFELDKI----HTYHPNCKMILRIRCD-DPNAA--VQLGN---KFGANED 154
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+++ L+ K +++++G H+GS + + A ++ + G + L+
Sbjct: 155 EIRHLLEYAKQL--DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILD 212
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK 360
IGGGL D + D +++ + ++ EPGR + L V G +
Sbjct: 213 IGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKR 272
Query: 361 TNGTKNFIVIDGSMAELIRPSLYDAYQHI---------ELVSPAPQDAEISKFDVVGPVC 411
V DG S Y + ++ +L+ P D E + G C
Sbjct: 273 --------VRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTC 324
Query: 412 ESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449
+ D + LP G + GAY + +++N
Sbjct: 325 DGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFN 362
>pdb|1D7K|A Chain A, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
pdb|1D7K|B Chain B, Crystal Structure Of Human Ornithine Decarboxylase At 2.1
Angstroms Resolution
Length = 421
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 162/407 (39%), Gaps = 45/407 (11%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+ N++ I++ L
Sbjct: 19 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVXCNDSKAIVKTLAA 76
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 77 TGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKV 136
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + L+ +A +
Sbjct: 137 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLRTSRLLLE--RAKELNID 184
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL------GIDYYH 311
+VG H+GS T + F A D GF + L+IGGG + +
Sbjct: 185 VVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEE 244
Query: 312 -TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK---------- 360
TG + P + + +I EPGR +A+ L ++ K
Sbjct: 245 ITGVINPALDKYFPS------DSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSD 298
Query: 361 -----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESA 414
+ T + V DG LYD L+ P+ D + GP C+
Sbjct: 299 DEDESSEQTFMYYVNDGVYGSF-NCILYDHAHVKPLLQKRPKPDERYYSSSIWGPTCDGL 357
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
D + + +LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 358 DRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMS 404
>pdb|3BTN|A Chain A, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
pdb|3BTN|B Chain B, Crystal Structure Of Antizyme Inhibitor, An Ornithine
Decarboxylase Homologous Protein
Length = 448
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 144/360 (40%), Gaps = 35/360 (9%)
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
Y +K N+ +LE L LG G S NE+ L G P IF K + + AA+
Sbjct: 66 YTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPCKQVSQIKYAAK 125
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
GV + D+E +L+ I A VLL I + + + + N KFG +
Sbjct: 126 VGVNIMTCDNEIELKKIARNHPNA----KVLLHIATEDN------IGGEDGNMKFGTTLK 175
Query: 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300
+ L+ K +++++G H+ S + ++ A D GF ++ L+
Sbjct: 176 NCRHLLECAKEL--DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLD 233
Query: 301 IGGGLGIDYYHTGAVLPKPRNLIDTVRELVL--SRNLNLIIEPGRSLIANTCCLVNHV-- 356
IGGG + T L + ++I + ++ + +I EPG +++ L ++
Sbjct: 234 IGGG----FTGTEIQLEEVNHVISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIA 289
Query: 357 ----------TGVKTNGTKN----FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEIS 402
+GV+ NG+ + + DG D E+ +D +
Sbjct: 290 KKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLF 349
Query: 403 KFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL 462
+ GP C+ D + + LP + G L+ + GA S +N RP Y++ S
Sbjct: 350 TSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSF 409
>pdb|3N2O|A Chain A, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|B Chain B, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|C Chain C, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
pdb|3N2O|D Chain D, X-Ray Crystal Structure Of Arginine Decarboxylase
Complexed With Arginine From Vibrio Vulnificus
Length = 648
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 12/149 (8%)
Query: 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVN 284
+ A+G + SKFG+ ++ + +K L H HLGS + + R+
Sbjct: 216 WQASGGEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESAR 275
Query: 285 YIDKIRAQGFEVDYLNIGGGLGIDYYHTGA---------VLPKPRNLIDTVRELV--LSR 333
+ ++R G + Y ++GGGL IDY T + ++ RN+++TV ++ +
Sbjct: 276 FYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQ 335
Query: 334 NLNLII-EPGRSLIANTCCLVNHVTGVKT 361
+ +II E GRSL A+ L+++V G +T
Sbjct: 336 PMPVIISESGRSLTAHHAVLISNVIGTET 364
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/365 (22%), Positives = 149/365 (40%), Gaps = 23/365 (6%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P L I + A K AL N + YA+K + ++ L G L + E+
Sbjct: 56 PLLLLDCDVIRQQYRALKNALP--NVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVE 113
Query: 153 LALRAGFDPTKCIFNGNGKLLEDL--VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNV 210
L G I K D+ LA VFV VD+ +LE + V +
Sbjct: 114 LVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFV-VDNLNELEKF----KAYRDDVEL 168
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
L+R++ A + + KFG E+ ++ K +++ G H+GS T
Sbjct: 169 LVRLS------FRNSEAFADLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTT 220
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGF-EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
+ + +A + ++++ +G + L+IGGG ++Y T V+P + L
Sbjct: 221 NPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNY--TQQVMPIDQFCAPINEAL 278
Query: 330 -VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+L ++++ EPGR + A V V G + + +D + ++D ++
Sbjct: 279 SLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARY 338
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
++ Q E+ + GP C+S D + + LP + G ++ GAY + A+ +
Sbjct: 339 P--LTTIKQGGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDF 396
Query: 449 NLKMR 453
N R
Sbjct: 397 NFFKR 401
>pdb|3NZP|A Chain A, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
pdb|3NZP|B Chain B, Crystal Structure Of The Biosynthetic Arginine
Decarboxylase Spea From Campylobacter Jejuni, Northeast
Structural Genomics Consortium Target Br53
Length = 619
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 33/301 (10%)
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLG--CGAVLVSGNELRLALRAGFDPTKCIFNGNGKL 172
G N++ Y +K N +++L KLG L +G++ L L ++ NG
Sbjct: 78 GFNAV--YPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAXAYNNEGAPITVNGFK 135
Query: 173 LEDLV----LAAQEG--VFVNVDSEFDLENIV-VASRIAGKKVNVLLRINPDVDPQVHPY 225
+L+ +AA+ G + + ++ +LE I+ +A K N+ LR+ V +
Sbjct: 136 DRELINIGFIAAEXGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLH-SAGVGIW 194
Query: 226 VATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNY 285
+G NSKFG+ + +L ++ +K + + H HLGS IT++ + A N
Sbjct: 195 AKSGGINSKFGLTSTELIEAVNLLKENKLLEQFTXIHFHLGSQITEIHPLKKALNEAGNI 254
Query: 286 IDKIRAQGFE-VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE-----LVLSRNL---- 335
++R G + + +N+GGGL ++Y K RN T+RE + + +N+
Sbjct: 255 YTELRKXGAKNLKAINLGGGLAVEYSQFKN--EKSRNY--TLREYANDVVFILKNIAEQK 310
Query: 336 -----NLIIEPGRSLIANTCCLVNHVTGVKTNG-TKNFIVIDGSMAELIRPSLYDAYQHI 389
++ IE GR + AN L+ V + + +N +++ +LI LYD Y+ I
Sbjct: 311 KDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLI-DELYDLYKSI 369
Query: 390 E 390
+
Sbjct: 370 K 370
>pdb|3NZQ|A Chain A, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
pdb|3NZQ|B Chain B, Crystal Structure Of Biosynthetic Arginine Decarboxylase
Adc (Spea) From Escherichia Coli, Northeast Structural
Genomics Consortium Target Er600
Length = 666
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 126/297 (42%), Gaps = 33/297 (11%)
Query: 96 LYSKPQITRNV-----EAYKQALE--GLNS--IIGYAIKANNNYKILEHLRKLGCGAVLV 146
L+ PQI ++ A+K+A E G N + Y IK N + +++E L G L
Sbjct: 89 LFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLE 148
Query: 147 SGNELRL-ALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIA- 204
+G++ L A+ A T+ + NG + + A G + +E + S IA
Sbjct: 149 AGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKM---SEIAI 205
Query: 205 ----GKKVNVLLRINPDV---DPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
+++NV+ R+ + ++G + SKFG+ ++ ++ ++
Sbjct: 206 VLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDS 265
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA--- 314
L H HLGS + + + ++ G + ++GGGLG+DY T +
Sbjct: 266 LQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSD 325
Query: 315 ------VLPKPRNLIDTVRELVLSRNL---NLIIEPGRSLIANTCCLVNHVTGVKTN 362
+ N+I + + L +I E GR++ A+ LV+++ GV+ N
Sbjct: 326 CSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERN 382
>pdb|3MT1|A Chain A, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
pdb|3MT1|B Chain B, Crystal Structure Of Putative Carboxynorspermidine
Decarboxylase Protein From Sinorhizobium Meliloti
Length = 365
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 84/377 (22%), Positives = 135/377 (35%), Gaps = 43/377 (11%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P+YL K ++TRN E E + A+K + + + R G S E+R
Sbjct: 5 PYYLIDKAKLTRNXERIAHVREKSGAKALLALKCFATWSVFDLXRDYXDGTTSSSLFEVR 64
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVL- 211
L T G D V++ + + N S+ + R A K +
Sbjct: 65 LGRERFGKETHAYSVAYGDNEIDEVVSHADKIIFNSISQLE--------RFADKAAGIAR 116
Query: 212 -LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
LR+NP V S+ G +W D K ++ G H
Sbjct: 117 GLRLNPQVSSSSFDLADPARPFSRLG------EW--DVPKVERVXDRINGFXIHNNCENK 168
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI--DYYHTGAVLPKPRNLIDTVRE 328
+F D + + ++ A VD++++GGG+ D Y A + R D
Sbjct: 169 DFGLF-DRXLGEIE--ERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRY-- 223
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ + +EPG + I + L V NG KN ++D S I D +
Sbjct: 224 -----GVQIYLEPGEASITKSTTLEVTVLDTLYNG-KNLAIVDSS----IEAHXLDLLIY 273
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKER---ELPTPDRGAGLVVHDAGAYCMSMA 445
E P + S + + G C + D G+ R EL DR + DA Y
Sbjct: 274 RETAKVLPNEGSHS-YXICGKSCLAGDVFGEFRFAEELKVGDR---ISFQDAAGYTXVKK 329
Query: 446 STYNLKMRPPEYWVRSL 462
+ +N ++ P +R L
Sbjct: 330 NWFN-GVKXPAIAIREL 345
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 85 VMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKL----- 139
++E +E++ Y P + +Q + L +I+G I NN +ILE+LRK
Sbjct: 70 IIEWLEEQ----YPTPALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADE 125
Query: 140 -----GCGAVLVSGNELRLALRAGFDPTKCIFN-GNGKLLEDLVLAAQEGVFVNVDSEFD 193
CG + +G + AL A DP + ++ G+ L D L Q +
Sbjct: 126 AAINAWCGTWISAGFDAYEALLA-VDPKRGRYSFGDTPTLADCYLVPQVESARRFQVDLT 184
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDP 220
++ A A +++ R P P
Sbjct: 185 PYPLIRAVDAACGELDAFRRAAPAAQP 211
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 85 VMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKL----- 139
++E +E++ Y P + +Q + L +I+G I NN +ILE+LRK
Sbjct: 69 IIEWLEEQ----YPTPALLPADADGRQRVRALAAIVGCDIHPINNRRILEYLRKTFGADE 124
Query: 140 -----GCGAVLVSGNELRLALRAGFDPTKCIFN-GNGKLLEDLVLAAQEGVFVNVDSEFD 193
CG + +G + AL A DP + ++ G+ L D L Q +
Sbjct: 125 AAINAWCGTWISAGFDAYEALLA-VDPKRGRYSFGDTPTLADCYLVPQVESARRFQVDLT 183
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDP 220
++ A A +++ R P P
Sbjct: 184 PYPLIRAVDAACGELDAFRRAAPAAQP 210
>pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 249
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 232 NSKFGIRNEKLQWFLDAVKAHPNELK--------LVGAHCHLGSTITKVDIFRDAAVLMV 283
+SK+ R E L+ F D+V + +LK L+G + H+ + AA +
Sbjct: 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVE 86
Query: 284 NYIDKIRAQGFEVDYLNI 301
DK++ GF DY+++
Sbjct: 87 LICDKLKTPGFSKDYVSL 104
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 134 EHLRKLGCGAVL-VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEF 192
EH+ LGC ++G +R AL G++ + N + + V + V D EF
Sbjct: 121 EHIN-LGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTD-EF 178
Query: 193 DLE-NIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237
L N+ + G ++ ++N ++ V+ GN N++FGI
Sbjct: 179 QLHTNVNDGTEFGG---SIYQKVNKKLETAVNLAWTAGNSNTRFGI 221
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 134 EHLRKLGCGAVL-VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEF 192
EH+ LGC ++G +R AL G++ + N + + V + V D EF
Sbjct: 124 EHIN-LGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTD-EF 181
Query: 193 DLE-NIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237
L N+ + G ++ ++N ++ V+ GN N++FGI
Sbjct: 182 QLHTNVNDGTEFGG---SIYQKVNKKLETAVNLAWTAGNSNTRFGI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,148,281
Number of Sequences: 62578
Number of extensions: 606263
Number of successful extensions: 1555
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 42
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)