BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012098
(471 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94A94|DCDA2_ARATH Diaminopimelate decarboxylase 2, chloroplastic OS=Arabidopsis
thaliana GN=LYSA2 PE=2 SV=1
Length = 489
Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/471 (80%), Positives = 407/471 (86%), Gaps = 10/471 (2%)
Query: 2 AATQLCSNSASLSKALTQ-----NPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNPAKS 56
A TQ S +S+ L Q +IP LK+TL + LK ++KA +SQN K+
Sbjct: 3 AVTQFLSQPSSIRGTLNQYQLNQTSLSRIPFLSLKSTL---KPLKRLSVKAAVSQNSTKT 59
Query: 57 QTH--TAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE 114
T + +HCF K +DGFLYCE +VQD+METVEKRPFYLYSKPQITRN+EAYK+ALE
Sbjct: 60 LTKESASSFDHCFKKSSDGFLYCEGTKVQDIMETVEKRPFYLYSKPQITRNLEAYKEALE 119
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G+ S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLAL AGFDPTKCIFNGNGK LE
Sbjct: 120 GVRSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALLAGFDPTKCIFNGNGKSLE 179
Query: 175 DLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234
DLVLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSK
Sbjct: 180 DLVLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSK 239
Query: 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294
FGIRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGF
Sbjct: 240 FGIRNEKLQWFLDEVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGF 299
Query: 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVN 354
EV YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VN
Sbjct: 300 EVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVN 359
Query: 355 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414
HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESA
Sbjct: 360 HVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPTPPEAEVTKFDVVGPVCESA 419
Query: 415 DFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
DFLGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 420 DFLGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 470
>sp|Q949X7|DCDA1_ARATH Diaminopimelate decarboxylase 1, chloroplastic OS=Arabidopsis
thaliana GN=LYSA1 PE=1 SV=1
Length = 484
Score = 770 bits (1987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/469 (80%), Positives = 412/469 (87%), Gaps = 11/469 (2%)
Query: 2 AATQLCSNSASLS----KALTQNPFPKIPISPLKTTLNFQRTLKPFTLKA-VLSQNPAKS 56
AATQ S +SL+ K T IP+ LK+TL + LK ++KA V+SQN +K+
Sbjct: 3 AATQFLSQPSSLNPHQLKNQTSQRSRSIPVLSLKSTL---KPLKRLSVKAAVVSQNSSKT 59
Query: 57 QTHTAPVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL 116
T +HCF K +DGFLYCE +V+D+ME+VE+RPFYLYSKPQITRN+EAYK+ALEG+
Sbjct: 60 VTK---FDHCFKKSSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNLEAYKEALEGV 116
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
+S+IGYAIKANNN KILEHLR LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK LEDL
Sbjct: 117 SSVIGYAIKANNNLKILEHLRSLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKSLEDL 176
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
VLAAQEGVFVNVDSEFDL NIV ASRI+GK+VNVLLRINPDVDPQVHPYVATGNKNSKFG
Sbjct: 177 VLAAQEGVFVNVDSEFDLNNIVEASRISGKQVNVLLRINPDVDPQVHPYVATGNKNSKFG 236
Query: 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEV 296
IRNEKLQWFLD VKAHP ELKLVGAHCHLGSTITKVDIFRDAAVLM+ YID+IR QGFEV
Sbjct: 237 IRNEKLQWFLDQVKAHPKELKLVGAHCHLGSTITKVDIFRDAAVLMIEYIDEIRRQGFEV 296
Query: 297 DYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHV 356
YLNIGGGLGIDYYH GAVLP P +LI+TVRELVLSR+LNLIIEPGRSLIANTCC VNHV
Sbjct: 297 SYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIANTCCFVNHV 356
Query: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADF 416
TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP P +AE++KFDVVGPVCESADF
Sbjct: 357 TGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPAEAEVTKFDVVGPVCESADF 416
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
LGK+RELPTP +GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV SI
Sbjct: 417 LGKDRELPTPPQGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSI 465
>sp|Q6ZG77|DCDA_ORYSJ Probable diaminopimelate decarboxylase, chloroplastic OS=Oryza
sativa subsp. japonica GN=LYSA PE=2 SV=1
Length = 490
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/402 (80%), Positives = 363/402 (90%), Gaps = 1/402 (0%)
Query: 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYA 123
+ CF + ADG LYCE VRV+D M E+ PFYLYSKPQ+ RN AY+ ALEGL SI+GYA
Sbjct: 69 KRCFRRGADGHLYCEGVRVEDAMGAAERTPFYLYSKPQVVRNFTAYRDALEGLRSIVGYA 128
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KANNN ++L+ LR+LGCGAVLVSGNELRLALRAGFDPT+CIFNGNGK LEDLVLAA+ G
Sbjct: 129 VKANNNLRVLQLLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKTLEDLVLAAESG 188
Query: 184 VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQ 243
VFVN+DSEFDLENIV A+R+AGKKV VLLRINPDVDPQVHPYVATGNK SKFGIRNEKLQ
Sbjct: 189 VFVNIDSEFDLENIVTAARVAGKKVPVLLRINPDVDPQVHPYVATGNKTSKFGIRNEKLQ 248
Query: 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303
WFLD++K++ N++ LVG HCHLGSTITKVDIFRDAA LMVNY+D+IRAQGFE++YLNIGG
Sbjct: 249 WFLDSIKSYSNDITLVGVHCHLGSTITKVDIFRDAAGLMVNYVDEIRAQGFELEYLNIGG 308
Query: 304 GLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG 363
GLGIDY+HT AVLP P +LI+TVRELVLSR+L LIIEPGRSLIANTCC VN VTGVK+NG
Sbjct: 309 GLGIDYHHTDAVLPTPMDLINTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKSNG 368
Query: 364 TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423
TKNFIV+DGSMAELIRPSLY AYQHIELVSP+P DAE++ FD+VGPVCESADFLGK+REL
Sbjct: 369 TKNFIVVDGSMAELIRPSLYGAYQHIELVSPSP-DAEVATFDIVGPVCESADFLGKDREL 427
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465
PTPD+GAGLVVHDAGAYCMSMASTYNLK+RPPEYWV SI
Sbjct: 428 PTPDKGAGLVVHDAGAYCMSMASTYNLKLRPPEYWVEDDGSI 469
>sp|P19572|DCDA_PSEAE Diaminopimelate decarboxylase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lysA
PE=3 SV=2
Length = 415
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/395 (37%), Positives = 230/395 (58%), Gaps = 9/395 (2%)
Query: 66 CFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIK 125
FS + D L+ E V + + E P Y+YS+ I AY AL G+ ++ +A+K
Sbjct: 3 TFSYR-DAELFAEGVALSRIAERFGT-PTYVYSRAHIEAQYRAYADALAGMPHLVCFAVK 60
Query: 126 ANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185
AN+N +L L +LG G +VS EL L AG DP K +F+G GK +D+ A + GV
Sbjct: 61 ANSNLGVLNVLARLGAGFDIVSRGELERVLAAGGDPAKVVFSGVGKTRDDMRRALEVGVH 120
Query: 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244
NV+S +LE + + G K V LR+NPDVD Q HPY++TG K +KFGI ++ +
Sbjct: 121 CFNVESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEA 180
Query: 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304
A A + L+++G CH+GS +T+++ F DA ++ +D++ +G + +L++GGG
Sbjct: 181 VY-ARAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGG 239
Query: 305 LGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
LG+ Y P + I +RE + R+L L+ EPGRS++AN L+ V +K
Sbjct: 240 LGVRYRDEQP--PLAGDYIRAIRERLHGRDLTLVFEPGRSIVANAGVLLTRVEYLKHTEH 297
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
K+F ++D +M +LIRP+LY A+ ++ V P+DA ++D+VGP+CE+ DFL K+R+L
Sbjct: 298 KDFAIVDAAMNDLIRPALYQAWMDVQAVR--PRDAAPRRYDLVGPICETGDFLAKDRDLA 355
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V AGAY M+S YN + R E V
Sbjct: 356 LAE-GDLLAVRSAGAYGFVMSSNYNTRGRAAEVLV 389
>sp|Q9JXM2|DCDA_NEIMB Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup B
(strain MC58) GN=lysA PE=3 SV=1
Length = 414
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 230/393 (58%), Gaps = 22/393 (5%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A LN ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAALNPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252
++ I VA+R+ GK V LRINPDVD + HPY++TG K +KFGI + DA++A+
Sbjct: 122 IDRIQKVAARL-GKTAPVSLRINPDVDAKTHPYISTGLKANKFGI------AYADALEAY 174
Query: 253 ------PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+G
Sbjct: 175 HYAAQQPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVG 233
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN 366
I Y +P V++L+ +R L LI+EPGRSL+ N L+ V VK KN
Sbjct: 234 IVYQDEN--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGSLLTRVEFVKYGEEKN 291
Query: 367 FIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP 426
F+++D +M +L+RP+LYDAY HIE V +D ++VGP+CE+ DFLGK+R +
Sbjct: 292 FVMVDAAMNDLMRPALYDAYHHIEAVE--TKDIATLTANIVGPICETGDFLGKDRTIAC- 348
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L++ AGAY SMAS YN + R E V
Sbjct: 349 EEGDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>sp|Q9JWA6|DCDA_NEIMA Diaminopimelate decarboxylase OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=lysA PE=3 SV=1
Length = 406
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/391 (40%), Positives = 232/391 (59%), Gaps = 18/391 (4%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
L+CE V + E P Y+YS+ +T E Y+ A L+ ++ YA+KAN N I++
Sbjct: 3 LFCEQVPYPRLAEAF-GTPLYVYSQSALTEAFEHYQTAFAELSPLVCYAVKANGNLSIIK 61
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
H LG G +VSG EL L AG D K IF+G GK ++ A GV N++S +
Sbjct: 62 HFASLGSGFDIVSGGELARVLAAGGDAAKTIFSGVGKSEAEIEFALNAGVKCFNMESIPE 121
Query: 194 LENIV-VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLDAVKA 251
++ I VA+R+ GK +V LR+NPDVD + HPY++TG K +KFGI + L+ + A +
Sbjct: 122 IDRIQKVAARL-GKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRHAAQ- 179
Query: 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311
PN LK++G CH+GS +T + +A ++ +D + A+G +++L++GGG+GI Y
Sbjct: 180 QPN-LKIIGIDCHIGSQLTDLSPLVEACERILILVDALAAEGIVLEHLDLGGGVGIVYQD 238
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVID 371
+P V++L+ +R L LI+EPGRSL+ N L+ V VK KNF+++D
Sbjct: 239 ED--VPDLGAYAQAVQKLIGTRRLKLILEPGRSLVGNAGALLTRVEFVKYGEEKNFVMVD 296
Query: 372 GSMAELIRPSLYDAYQHIELVSP---APQDAEISKFDVVGPVCESADFLGKERELPTPDR 428
+M +L+RP+LYDAY HIE V P AP A ++VGP+CE+ DFLGK+R + +
Sbjct: 297 AAMNDLMRPALYDAYHHIEAVEPKNIAPLTA-----NIVGPICETGDFLGKDRTIAC-EE 350
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
G L++ AGAY SMAS YN + R E V
Sbjct: 351 GDLLLIRSAGAYGASMASNYNARNRAAEVLV 381
>sp|O67262|DCDA_AQUAE Diaminopimelate decarboxylase OS=Aquifex aeolicus (strain VF5)
GN=lysA PE=1 SV=1
Length = 420
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 151/391 (38%), Positives = 237/391 (60%), Gaps = 8/391 (2%)
Query: 72 DGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYK 131
DG L+ E V ++++ +T P Y+YS I EAY++A +++I YA+KAN N
Sbjct: 15 DGELFIEGVSLKELAQTF-GTPLYVYSSNFIKERFEAYRKAFP--DALICYAVKANFNPH 71
Query: 132 ILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-QEGVFVNVDS 190
+++ L +LG GA +VSG EL LA +AG P + ++ G GK ++L A E + NV+S
Sbjct: 72 LVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVES 131
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L+ + + GKK + +R+NPDVDP+ HPY+ATG + SKFG+ + Q +
Sbjct: 132 RQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS 191
Query: 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310
N L++VG HCH+GS I + +R+A +V+ + + +GF++ YL+IGGGLGI Y
Sbjct: 192 KLEN-LEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYK 250
Query: 311 HTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
P P++L D +++L+ + +I+EPGRS++ N L+ V +K G+K+FI++
Sbjct: 251 PEDKE-PAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIV 309
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGA 430
D M +LIRPS+Y+AY HI V + ++ D+VGP+CE+ DFL +RE+ RG
Sbjct: 310 DAGMNDLIRPSIYNAYHHIIPVETKERKKVVA--DIVGPICETGDFLALDREIEEVQRGE 367
Query: 431 GLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
L V AGAY +M+S YN++ R E V +
Sbjct: 368 YLAVLSAGAYGFAMSSHYNMRPRAAEVLVEN 398
>sp|Q9KVL7|DCDA_VIBCH Diaminopimelate decarboxylase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=lysA PE=1
SV=1
Length = 417
Score = 251 bits (642), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/395 (37%), Positives = 229/395 (57%), Gaps = 9/395 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA 126
F+ + DG L+ E V + D+ P Y+YS+ + R+ A+ +++ +I YA+KA
Sbjct: 4 FNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKA 62
Query: 127 NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-F 185
N+N +L L +LG G +VS EL L AG DP+K +F+G GK ++ A Q +
Sbjct: 63 NSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKC 122
Query: 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245
NV+SE +L+ + + G K + LRINPDVD + HPY++TG +++KFGI ++
Sbjct: 123 FNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQV 182
Query: 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
+ PN L + G CH+GS +T + F DA ++ ID ++A+G + +L++GGGL
Sbjct: 183 YRLAHSLPN-LDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGL 241
Query: 306 GIDYYHTGAVLPKPRNLIDTVRE-LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGT 364
G+ Y + P+P + + L R+L LI EPGR++ AN LV V +K
Sbjct: 242 GVVY--RDELPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEH 299
Query: 365 KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP 424
KNF +ID +M +LIRP+LY A+Q I + P+ E +D+VGPVCE++DFLGK+R+L
Sbjct: 300 KNFAIIDAAMNDLIRPALYQAWQDI--IPLRPRQGEAQTYDLVGPVCETSDFLGKDRDLV 357
Query: 425 TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ G L V +GAY +M+S YN + R E V
Sbjct: 358 LQE-GDLLAVRSSGAYGFTMSSNYNTRPRVAEVMV 391
>sp|O29458|DCDA_ARCFU Diaminopimelate decarboxylase OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=lysA PE=3 SV=1
Length = 419
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 152/401 (37%), Positives = 226/401 (56%), Gaps = 26/401 (6%)
Query: 71 ADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY 130
+DG L E V+V +++ P Y+ S+ + RN+EAYK+A N + YA+KANNN
Sbjct: 5 SDGILTVEGVKVTEIVRET-GTPVYVTSRALLERNLEAYKKAFS--NEGLLYAVKANNNL 61
Query: 131 KILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDS 190
++ + G GA + S EL LA AGF +FNGN K +++ + GV +VDS
Sbjct: 62 ALMRIIASHGFGADVFSDGELYLASLAGFRKDMVLFNGNSKSRKEIEMGVTAGVKFSVDS 121
Query: 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250
+L I ++ GK+V + R+NPDVDP+ HP +ATG + SKFGI +E ++ +
Sbjct: 122 LDELRTISKIAKEVGKEVEIAFRVNPDVDPKTHPKIATGLRESKFGIPHEMVR------E 175
Query: 251 AHPNELKL-----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305
A+ LKL VG HCH+GS I + F A +++ I G E+ ++++GGGL
Sbjct: 176 AYEMALKLDGVVPVGIHCHIGSQILDLSPFVHALNKVMDIAVDIEKLGVELSFVDMGGGL 235
Query: 306 GIDYYHTGAVLPKPRNLIDTV------RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGV 359
GIDY GA P P++L + R+ L+ + L +EPGRS++ NT L+ V V
Sbjct: 236 GIDYEGKGA--PTPKDLASAILPEFEGRKADLTSDPQLWLEPGRSIVGNTTVLITRVNAV 293
Query: 360 KTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-FDVVGPVCESADFLG 418
K G KNF+ +D LIRP++Y +Y + + + DAE + + VVGP+CES D L
Sbjct: 294 K-KGYKNFVAVDAGFNVLIRPAMYGSYHRVAVAN--KMDAEPEEVYTVVGPICESGDVLA 350
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
++R+LP + G + V DAGAY M+S YN + R E V
Sbjct: 351 RDRKLPKVEVGDLIAVFDAGAYGFVMSSQYNGRPRCAEVLV 391
>sp|O05321|DCDA_PSEFL Diaminopimelate decarboxylase OS=Pseudomonas fluorescens GN=lysA
PE=3 SV=1
Length = 416
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 219/390 (56%), Gaps = 11/390 (2%)
Query: 73 GFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKI 132
G L+ E V + + E P Y+YS+ I + ALEG+ ++ +A+KAN+N +
Sbjct: 9 GELFAEGVALSAIAERF-GTPTYVYSRAHIEAQYRTFADALEGMPHLVCFAVKANSNLGV 67
Query: 133 LEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191
L L +LG G +VSG EL L AG K +F+G GK ED+ A + GV N++S
Sbjct: 68 LNVLARLGAGFDIVSGGELERVLAAGGSADKIVFSGVGKTREDMRRALEVGVHCFNIEST 127
Query: 192 FDLEN--IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249
+L + +VA+ + G + + LR+NPDVD HPY++TG K +KFGI +
Sbjct: 128 DELGSRLQIVAAEL-GVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYVRA 186
Query: 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309
PN L+++G CH+GS +T ++ F DA ++ +D++ G + ++++GGG+G+ Y
Sbjct: 187 AQLPN-LEVLGVDCHIGSQLTTLEPFIDALDRLLALVDRLGDCGIYLRHIDLGGGVGVRY 245
Query: 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369
P + I VRE + R+L L+ EPGR ++AN L+ V +K K+F +
Sbjct: 246 RDEEP--PLVADYIKAVRERLDGRDLALMFEPGRYIVANAGVLLTQVEYLKHTEHKDFAI 303
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRG 429
+D +M +LIRP+LY A+ + V P+D +D+VGP+CE+ DFL K REL + G
Sbjct: 304 VDAAMNDLIRPALYQAWMDVTAVR--PRDTAARSYDIVGPICETGDFLAKGRELAL-EEG 360
Query: 430 AGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
L VH AGAY M+S YN + R E V
Sbjct: 361 DLLAVHSAGAYGFVMSSNYNTRGRCAEVLV 390
>sp|Q9Z661|DCDA_ZYMMO Diaminopimelate decarboxylase OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=lysA PE=3 SV=1
Length = 421
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 136/389 (34%), Positives = 213/389 (54%), Gaps = 10/389 (2%)
Query: 67 FSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN---SIIGYA 123
FS K +G L ED+ + ++ P Y+YS +T + +AL+G S++ +A
Sbjct: 4 FSLK-NGTLCVEDIPLPEIAAQY-GTPCYVYSHSYLTERARRFTKALDGAGKGKSLVAFA 61
Query: 124 IKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG 183
+KAN + IL K G GA +VS E+R A+ AG P + +F+G GK E++ A + G
Sbjct: 62 VKANPSQAILASFAKEGLGADVVSAGEIRRAVHAGIPPERIVFSGVGKTAEEMRYALEIG 121
Query: 184 VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242
+ N++S ++E + + GKK V LRINPDVDP H +ATG ++KFGI E
Sbjct: 122 IGQFNIESVSEIEMLAEVATSLGKKAAVALRINPDVDPHTHAKIATGKADTKFGIAAEDA 181
Query: 243 QWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302
+ + ++P+ LK+ G H+GS IT + F AA + I + G ++ ++G
Sbjct: 182 LSAYEKLASYPS-LKIQGIASHIGSQITDLAPFEAAAERIYEIITALEKAGHAIETADLG 240
Query: 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTN 362
GGLG+ Y P + ++ + N LI EPGRSLIAN L++ V +K +
Sbjct: 241 GGLGVRYKDDQPEPPSVEAYGEMIKRVTKGWNCRLIFEPGRSLIANAGVLLSKVIRIKES 300
Query: 363 GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE 422
T F+++D +M +L+RP+LYDAY I+ V+P+ A+ + D+VGPVCE+ D + R
Sbjct: 301 KTARFVILDAAMNDLVRPTLYDAYHEIKAVTPS---AQTYQADIVGPVCETGDIFARNRS 357
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLK 451
+ + + AGAY +MAS YN +
Sbjct: 358 ISAVKADDLMAIMSAGAYGATMASAYNSR 386
>sp|P44316|DCDA_HAEIN Diaminopimelate decarboxylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=lysA PE=3 SV=1
Length = 415
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/395 (35%), Positives = 226/395 (57%), Gaps = 8/395 (2%)
Query: 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILE 134
LY ED+ VQ + E P Y+YS+ + R+ A+ A +I +A+K+ +N +L
Sbjct: 11 LYAEDMPVQQLAEQF-GTPLYVYSRATLERHWHAFDSAFGNRPHLICFAVKSCSNIGVLN 69
Query: 135 HLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFD 193
+ KLG G +VS EL L AG D +K +F+G K E+++ A + + NV+S +
Sbjct: 70 IMAKLGSGFDIVSQGELERVLAAGGDASKVVFSGVAKSREEIMRALEVRIRCFNVESVSE 129
Query: 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253
L++I + GK + LR+NPDVD HPY++TG K +KFG+ + + P
Sbjct: 130 LKHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEAREVYKLASTLP 189
Query: 254 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313
N +K+ G CH+GS +T++ F DA ++ +++++ G + +L++GGGLG+ Y T
Sbjct: 190 N-IKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLGGGLGVTY--TD 246
Query: 314 AVLPKPRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDG 372
P P + + + E + + L +I+EPGR++ AN LV V +K+N ++NF + D
Sbjct: 247 ETPPHPSDYANALLEKLKNYPELEIILEPGRAISANAGILVAKVQYLKSNESRNFAITDT 306
Query: 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGL 432
M ++IRP+LY+AY +I + + E + +DVVGPVCE++DFLGK+REL + G +
Sbjct: 307 GMNDMIRPALYEAYMNIVEIDRTLE-REKAIYDVVGPVCETSDFLGKQRELSIAE-GDYI 364
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
AGAY SM+S YN + R E V S +I
Sbjct: 365 AQCSAGAYGASMSSNYNSRARTAEVLVDGDQSYLI 399
>sp|Q58497|DCDA_METJA Diaminopimelate decarboxylase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=lysA PE=1 SV=1
Length = 438
Score = 228 bits (582), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 219/387 (56%), Gaps = 21/387 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQI----TRNVEAYKQALE--GLNSIIGYAIKANNNYKILEH 135
D +E EK P Y+ S+ QI R +EA+K+ E G I+ YA KAN N I
Sbjct: 24 DAIELAEKFGTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRL 83
Query: 136 LRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDL 194
L KLGCGA +VSG EL +A + K +FNGN K E++++ + + NVDS +L
Sbjct: 84 LAKLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISEL 143
Query: 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--H 252
I ++ G+ NV RINP+V+P+ HP ++TG K +KFG+ E + A+K
Sbjct: 144 ILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVES-GIAMKAIKMALE 202
Query: 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312
+ +VG HCH+GS +T + F + +++++ +++ +G E++ +N+GGGLGI YY
Sbjct: 203 MEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKD 262
Query: 313 GAVLPKPRNLIDTVRELVLSRNL-----NLIIEPGRSLIANTCCLVNHVTGVKTNGTKNF 367
+ P ++L D + +L NLI+EPGRSL+A L+ V +K +
Sbjct: 263 KQI-PTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKW 321
Query: 368 IVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD 427
++ID M +++RP++Y+AY HI + + E+ + G +CES+D G++REL +
Sbjct: 322 VMIDAGMNDMMRPAMYEAYHHI-INCKVKNEKEV--VSIAGGLCESSDVFGRDRELDKVE 378
Query: 428 RGAGLVVHDAGAYCMSMASTYNLKMRP 454
G L + D GAY +SMA+ YN + RP
Sbjct: 379 VGDVLAIFDVGAYGISMANNYNARGRP 405
>sp|Q9ZME5|DCDA_HELPJ Diaminopimelate decarboxylase OS=Helicobacter pylori (strain J99)
GN=lysA PE=3 SV=1
Length = 405
Score = 227 bits (578), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 210/363 (57%), Gaps = 11/363 (3%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K PFYLY +I + YK+A +G S+I YA+KAN+N IL L LG GA VS E
Sbjct: 12 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLANLGSGADCVSIGE 71
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
++ AL+AG P K +F+G GK ++ A + + F+NV+S +L+ I ++ G K
Sbjct: 72 IQRALKAGIKPYKIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKAR 131
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS
Sbjct: 132 ISIRINPNIDAKTHPYISTGLKENKFGVEEKEALEMFLWAKKSAF--LEPVSVHFHIGSQ 189
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH--TGAVLPKPRNLIDTV 326
+ +D +A+ + + A G ++ + ++GGG+G+ Y + T + + +++++
Sbjct: 190 LLDLDPITEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNSL 249
Query: 327 RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386
+ L +L +I EPGRS++A + L+ V K K F+++D M + +RPSLY A
Sbjct: 250 QGL----DLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAK 305
Query: 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446
I +++P EIS DVVGPVCES+D K+ LP + G L + GAY SMAS
Sbjct: 306 HAIRVITPCG-GREISPCDVVGPVCESSDTFLKDANLPELEPGDKLAIEKVGAYGSSMAS 364
Query: 447 TYN 449
YN
Sbjct: 365 QYN 367
>sp|P56129|DCDA_HELPY Diaminopimelate decarboxylase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=lysA PE=3 SV=1
Length = 405
Score = 222 bits (566), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 211/363 (58%), Gaps = 11/363 (3%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K PFYLY +I + YK+A +G S+I YA+KAN+N IL L L GA VS E
Sbjct: 12 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGE 71
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
+ AL+AG P + +F+G GK ++ A + + F+NV+S +L I ++ G K
Sbjct: 72 IYRALKAGIKPYRIVFSGVGKSGFEIEQALKLNILFLNVESFMELTTIETIAQSLGIKAR 131
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS
Sbjct: 132 ISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAF--LEPVSVHFHIGSQ 189
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH--TGAVLPKPRNLIDTV 326
++ ++ +A+ + + A G ++ + ++GGG+G+ Y + T + + +++++
Sbjct: 190 LSDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNSL 249
Query: 327 RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386
+ L +L +I EPGRS++A + L+ V K K F+V+D M + +RPSLY A
Sbjct: 250 QGL----DLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVVVDAGMNDFLRPSLYHAK 305
Query: 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446
I +++P+ + EIS DVVGPVCES+D K+ LP + G LV+ GAY SMAS
Sbjct: 306 HAIRVITPS-KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKLVIEKVGAYGSSMAS 364
Query: 447 TYN 449
YN
Sbjct: 365 QYN 367
>sp|B4XMC6|DCDA_HELPX Diaminopimelate decarboxylase OS=Helicobacter pylori GN=lysA PE=1
SV=1
Length = 405
Score = 221 bits (563), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 130/361 (36%), Positives = 206/361 (57%), Gaps = 7/361 (1%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
K PFYLY +I + YK+A +G S+I YA+KAN+N IL L L GA VS E
Sbjct: 12 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGE 71
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
++ AL+AG P + +F+G GK ++ A + + F+NV+S +L+ I ++ G K
Sbjct: 72 IQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKAR 131
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+ +RINP++D + HPY++TG K +KFG+ E L+ FL A K+ L+ V H H+GS
Sbjct: 132 ISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAF--LEPVSVHFHIGSQ 189
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328
+ ++ +A+ + + A G ++ + ++GGG+G+ Y + + K + +
Sbjct: 190 LLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETI--KLYDYAQGILN 247
Query: 329 LVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
+ +L +I EPGRS++A + L+ V K K F+++D M + +RPSLY A
Sbjct: 248 ALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHA 307
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I +++P+ + EIS DVVGPVCES+D K+ LP + G + + GAY SMAS Y
Sbjct: 308 IRVITPS-KGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQY 366
Query: 449 N 449
N
Sbjct: 367 N 367
>sp|Q9PII5|DCDA_CAMJE Diaminopimelate decarboxylase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=lysA PE=3 SV=1
Length = 402
Score = 208 bits (529), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 127/366 (34%), Positives = 204/366 (55%), Gaps = 8/366 (2%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PFY+Y+ I K+A + S I YA+KAN+N +L+ L L G VS E++
Sbjct: 13 PFYIYNFDFIKERFLNLKEAFKARKSQIFYAVKANSNLSLLQMLANLDSGFDCVSIGEVK 72
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
AL+AG K IF+G GK E+L A + + ++N++SE ++ + ++ K +
Sbjct: 73 RALKAGAKAYKIIFSGVGKTKEELRQALEYDILYINLESEAEMMLLESVAKELNLKARIS 132
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNE-KLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270
+R+NP+VD + HPY++TG +KFG+ + + +L A + + L+ VG H H+GS +
Sbjct: 133 IRVNPNVDAKTHPYISTGLNENKFGVEIDIARKMYLYA--KNSSFLEPVGVHFHIGSQLL 190
Query: 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330
+ +AA ++ + +++A ++ + +IGGGLG+ Y P + + +
Sbjct: 191 DISPIHEAAAIVAKLVRELKALQIDLKFFDIGGGLGVA-YEKNECEPDLYDYAQGILAQL 249
Query: 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIE 390
+L + +EPGR L+A + V V K N TK F+V+DG+M +LIRPSLY+AY E
Sbjct: 250 HGLDLTIGMEPGRYLVAKSGEFVCSVLYEKQNKTKRFVVVDGAMNDLIRPSLYEAYH--E 307
Query: 391 LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
++ P Q E S DVVG +CES DF K R LP+ +V+ + GAY SM+S YN
Sbjct: 308 IILPYNQGEE-SLCDVVGGICESGDFFAKARSLPSTQSDDIMVIKNTGAYGFSMSSNYNT 366
Query: 451 KMRPPE 456
+ + E
Sbjct: 367 RNKVCE 372
>sp|Q9X1K5|DCDA_THEMA Diaminopimelate decarboxylase OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=lysA PE=1 SV=1
Length = 386
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 206/373 (55%), Gaps = 26/373 (6%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P Y+Y + + + K+ EG+N + +A+KANNN +L+ LR+ G G +V+ EL
Sbjct: 14 PTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELL 73
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVL 211
A AG ++NGNGK + + +E V VNVDS E + + + + V
Sbjct: 74 AAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDS---FEEMEIWRELNPEGVEYF 130
Query: 212 LRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271
+R+NP+VD + HP+++TG K KFGI E L F++ ++ + + G H H+GS IT+
Sbjct: 131 IRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS----MNIRGLHVHIGSQITR 186
Query: 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV- 330
V+ F +A +V ++ GFE +NIGGG GI+Y +G L + + RE V
Sbjct: 187 VEPFVEAFSKVVRASER---YGFE--EINIGGGWGINY--SGEELD-----LSSYREKVV 234
Query: 331 --LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388
L R +I+E GR ++A + L+ V VK K F+V+DG M LIRP+LY AY
Sbjct: 235 PDLKRFKRVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHR 294
Query: 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448
I ++ ++ + DVVGP+CES D + +RELP + G + V +AGAY +M++ Y
Sbjct: 295 IFVLGKQGKEM---RADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNY 351
Query: 449 NLKMRPPEYWVRS 461
N RP E VR
Sbjct: 352 NSTTRPAEVLVRE 364
>sp|Q8A800|DCDA_BACTN Diaminopimelate decarboxylase OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=lysA PE=3 SV=1
Length = 386
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 196/378 (51%), Gaps = 10/378 (2%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSI-IGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
+ PFY Y + + A Q + S + YA+KAN N K+L +R+ G GA VSG
Sbjct: 14 QTPFYYYDTKVLRDTLSAINQEVAKYPSYSVHYAVKANANPKVLTIIRESGMGADCVSGG 73
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKV 208
E+R A+RAGF K +F G GK ++ L + G+F NV+S +LE I + K
Sbjct: 74 EIRAAVRAGFPANKIVFAGVGKADWEINLGLEYGIFCFNVESIPELEVINELAAAQNKIA 133
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
NV RINPDV H + TG +KFGI + + +D N +K +G H H+GS
Sbjct: 134 NVAFRINPDVGAHTHANITTGLAENKFGISMQDMDRVIDVALEMKN-VKFIGLHFHIGSQ 192
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG-AVLPKPRNLIDT-V 326
I + F + DK+ A+ V+++N+GGGLGIDY H +P ++ T
Sbjct: 193 ILDMGDFIALCNRVNELQDKLEARRILVEHINVGGGLGIDYGHPNRQSVPDFKSYFATYA 252
Query: 327 RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386
+L L L E GR+++ L++ V VK K F ++D M +LIRP+LY AY
Sbjct: 253 GQLKLRPYQTLHFELGRAVVGQCGSLISKVLYVKQGTKKKFAILDAGMTDLIRPALYQAY 312
Query: 387 QHIE-LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA 445
+E + S P +A +DVVGP+CES+D GK +L RG + + AGAY MA
Sbjct: 313 HKMENITSEEPVEA----YDVVGPICESSDVFGKAIDLNKVKRGDLIALRSAGAYGEIMA 368
Query: 446 STYNLKMRPPEYWVRSLI 463
S YN + P Y L+
Sbjct: 369 SGYNCRELPKGYTSDELV 386
>sp|Q2A5D5|DCDA_FRATH Diaminopimelate decarboxylase OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=lysA PE=3 SV=1
Length = 389
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 129/357 (36%), Positives = 188/357 (52%), Gaps = 31/357 (8%)
Query: 117 NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176
N+ I YAIKAN+N KI+ +K G G VSG E++ AL D +F ++
Sbjct: 50 NAEIHYAIKANHNPKIVGIAKKYGMGIDCVSGGEIKRALEQKVDSQHIVF-----ARFEI 104
Query: 177 VLAAQEGVFVNVDSEFDLENIVVASRIA---GKKVNVLLRINPDVDPQVHPYVATGNKNS 233
LA +F +SE LE I V ++IA K+VN+ LR+NP++D Q H Y++TG +
Sbjct: 105 ELAIDNDIFA-FNSE-SLEEIQVINQIAQRKNKQVNICLRVNPNIDAQTHHYISTGQFDD 162
Query: 234 KFGIRN-EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ 292
KFGI + L W D + N + ++G H H+GS I +F+ A+ +I +R
Sbjct: 163 KFGIAFVDILNWLKDEYRNFAN-INIIGLHYHVGSQILNYQVFQSLAITTNEHIKLLRQN 221
Query: 293 GFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID------TVRELV-LSRNLNLIIEPGRSL 345
+ ++N GGGLGIDY + P+ ++D RE S L L E GRSL
Sbjct: 222 DINIKHINFGGGLGIDYQN-----PQQNPIVDFDGYFARFREFFKYSDELVLHFELGRSL 276
Query: 346 IANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISK-- 403
+ + LV+ V K +F++ID M ELIRP+LY A I A D I++
Sbjct: 277 VGQSGVLVSQVLFNKVTQGTHFVIIDAGMTELIRPALYQAQHKI----AALIDENINQKQ 332
Query: 404 -FDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459
+ +VGP+CES+D K +LP RG L ++ AGAY +AS YNL+ EY++
Sbjct: 333 HYHIVGPICESSDVFAKYYQLPKLKRGDLLAIYSAGAYGKVLASEYNLRPSVQEYFI 389
>sp|O27390|DCDA_METTH Diaminopimelate decarboxylase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=lysA PE=3 SV=1
Length = 428
Score = 181 bits (460), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 127/380 (33%), Positives = 190/380 (50%), Gaps = 20/380 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNS--IIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P Y+ + +I N +A G S + YA KAN N ++ L + G G VS E
Sbjct: 30 PLYVIDEMRIRENYRRLYRAFSGEYSRFQVFYACKANTNLAVMRILEEEGSGIDAVSPGE 89
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNV 210
+ AL AGFDP + ++ GN ++L A GV +NVDS L + S IA + + +
Sbjct: 90 IYTALMAGFDPDRILYTGNNVRDDELQFALDSGVRINVDSRSQLLRL---SEIAPEGLRI 146
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
R+NP V H + TG + SKFG+ E + + A+ + VG H H+GS I
Sbjct: 147 SFRVNPLVGAGHHEHCITGGEMSKFGVMEREAPEVYRMAMDLG---FEPVGIHAHIGSGI 203
Query: 270 TKVDIFRDAAVLMVNYIDKI-RAQGFEVDYLNIGGGLGIDYYHTGAVL------PKPRNL 322
+ F A +++ ++ A G E ++++ GGGLGI Y L K L
Sbjct: 204 LDPEPFMLAVETLMDIAGRVHEATGVEFEFIDFGGGLGIPYTPEEEPLDIDEFASKITGL 263
Query: 323 I-DTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPS 381
D + E L R + + +EPGR ++ + L+ V +K + + F +D L+RP+
Sbjct: 264 FKDKLSEYGLGRPM-MCLEPGRYIVGDASYLLTRVNTIKES-YRKFAGVDAGFNTLLRPA 321
Query: 382 LYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYC 441
+Y +Y HI LV+ P D K DV G VCES D ++R+LP + G L + +AGAY
Sbjct: 322 MYGSYHHI-LVAERPLDEPSEKMDVAGNVCESGDLFARDRQLPEINEGDVLAIMNAGAYS 380
Query: 442 MSMASTYNLKMRPPEYWVRS 461
SM+S YN + RP E VR
Sbjct: 381 FSMSSQYNSRPRPAEVLVRE 400
>sp|Q5HG20|DCDA_STAAC Diaminopimelate decarboxylase OS=Staphylococcus aureus (strain COL)
GN=lysA PE=3 SV=1
Length = 421
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/386 (32%), Positives = 202/386 (52%), Gaps = 32/386 (8%)
Query: 93 PFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P +Y + QI + Y +A + GL I YA KA ++++ + + +VS E
Sbjct: 28 PTIVYDELQIREQMRRYHRAFKDSGLKYNISYASKAFTCIQMVKLVAEEDLQLDVVSEGE 87
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE--GVFVNVDSEFDLENIVVASRIAGKKV 208
L AL AGF+P++ F+GN K ++ A + G FV +DS LE I + R A V
Sbjct: 88 LYTALEAGFEPSRIHFHGNNKTKHEIRYALENNIGYFV-IDS---LEEIELIDRYANDTV 143
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-----HPNELKLVGAHC 263
V+LR+NP V+ H ++ TG ++SKFG+ +Q+ L A KA LKL G HC
Sbjct: 144 QVVLRVNPGVEAHTHEFIQTGQEDSKFGL---SIQYGL-AKKAIDKVQQSKHLKLKGVHC 199
Query: 264 HLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKP---R 320
H+GS I + F + A +++ + ++ QG +V+ LN+GGG GI Y P +
Sbjct: 200 HIGSQIEGTEAFIETAKIVLRW---LKEQGIQVELLNLGGGFGIKYVEGDESFPIESGIK 256
Query: 321 NLIDTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTNGTKN-FIVIDGSMAE 376
++ D ++ + ++ + IEPGRS++ + V +K N ++ IDG M++
Sbjct: 257 DITDAIKSEIKVLGIDAPEIGIEPGRSIVGEAGVTLYEVGTIKEIPEINKYVSIDGGMSD 316
Query: 377 LIRPSLYDA-YQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP-DRGAGLVV 434
IR +LYDA YQ + + D ++ + G +CES D + K+ +LP+ RG L +
Sbjct: 317 HIRTALYDAKYQALLVNRNEEADDSVT---IAGKLCESGDIIIKDAKLPSSVKRGDYLAI 373
Query: 435 HDAGAYCMSMASTYNLKMRPPEYWVR 460
GAY SMAS YN +P ++++
Sbjct: 374 LSTGAYHYSMASNYNQMQKPSVFFLK 399
>sp|Q9RTK2|DCDA_DEIRA Diaminopimelate decarboxylase OS=Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC
15346 / NCIMB 9279 / R1 / VKM B-1422) GN=lysA PE=3 SV=1
Length = 379
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 174/364 (47%), Gaps = 27/364 (7%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P YLY ++ + ++A ++ I YA+KAN N +L G G VS EL
Sbjct: 18 PLYLYDAEELDAALWRVQRAFG--DARIFYAMKANPNLNLLRRYAAAGVGFECVSLGELL 75
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLL 212
A AG + I NG K + AA+ G + VD E ++ + SR VL+
Sbjct: 76 RAEAAGAGGERMILNGPAKSDAEYAAAARLGATIVVDREEEVVLLPPGSR-------VLV 128
Query: 213 RINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKV 272
R+NP + H ++ATG SKFG+ E++ L ++ +E+ +G H H+GS I +
Sbjct: 129 RVNPAMTVSTHEHLATGTARSKFGLTPEQVPGTLAELRDAGHEV--LGLHMHIGSAIEQA 186
Query: 273 DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLS 332
+ F A + ++RA + LN+GGG ++ G + E
Sbjct: 187 EDFTAA----FARVTELRAHIGGLSVLNVGGGWSLNADLEG--------IAYEAHEAARV 234
Query: 333 RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELV 392
L +EPGR L+A+ L+ V G K G +NF ++D M E +RP LY A +
Sbjct: 235 FGAELWVEPGRYLVASAGWLLTRVVGTKRTG-RNFCLVDAGMTEFLRPMLYGASHPL--- 290
Query: 393 SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKM 452
P +DV GP CES D + + LPTP RG L++ +AGAY SM+STY +
Sbjct: 291 YPMWDALATEVWDVAGPACESGDLIARGVPLPTPQRGHLLLIGEAGAYGASMSSTYLSRP 350
Query: 453 RPPE 456
RP E
Sbjct: 351 RPAE 354
>sp|P23630|DCDA_BACSU Diaminopimelate decarboxylase OS=Bacillus subtilis (strain 168)
GN=lysA PE=3 SV=5
Length = 439
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 118/382 (30%), Positives = 189/382 (49%), Gaps = 15/382 (3%)
Query: 93 PFYLYSKPQITRNVEAYKQAL--EGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P Y+Y I +++KQA GL + + YA KA ++ +++ + G +VSG E
Sbjct: 32 PLYVYDVALIRERAKSFKQAFISAGLKAQVAYASKAFSSVAMIQLAEEEGLSLDVVSGGE 91
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVN 209
L A+ AGF + F+GN K E+L +A + + + VD+ +++ + + G ++
Sbjct: 92 LYTAVAAGFPAERIHFHGNNKSREELRMALEHRIGCIVVDNFYEIALLEDLCKETGHSID 151
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267
VLLRI P V+ H Y+ TG ++SKFG + N + + ++ V ++L+G HCH+GS
Sbjct: 152 VLLRITPGVEAHTHDYITTGQEDSKFGFDLHNGQTERAIEQV-LQSEHIQLLGVHCHIGS 210
Query: 268 TITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGLGIDYYHTGAVLPKP---RNLI 323
I F AA + +D+ R + F LN+GGG GI Y L +I
Sbjct: 211 QIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLNLGGGFGIRYTEDDEPLHATEYVEKII 270
Query: 324 DTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVK-TNGTKNFIVIDGSMAELIR 379
+ V+E + + IEPGRSL+ + + V K G + ++ +DG M + IR
Sbjct: 271 EAVKENASRYGFDIPEIWIEPGRSLVGDAGTTLYTVGSQKEVPGVRQYVAVDGGMNDNIR 330
Query: 380 PSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGA 439
P+LY A ++ + +A + G CES D L + +LP G L V GA
Sbjct: 331 PALYQA-KYEAAAANRIGEAHDKTVSIAGKCCESGDMLIWDIDLPEVKEGDLLAVFCTGA 389
Query: 440 YCMSMASTYNLKMRPPEYWVRS 461
Y SMA+ YN RP +V +
Sbjct: 390 YGYSMANNYNRIPRPAVVFVEN 411
>sp|Q9KCM5|DCDA_BACHD Diaminopimelate decarboxylase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=lysA PE=3 SV=1
Length = 439
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 19/383 (4%)
Query: 93 PFYLYSKPQITRNVEAYKQAL--EGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
P ++Y I + +KQA EG+ + + YA KA + + + +LG +VSG E
Sbjct: 32 PLFVYDVALIRERAKDFKQAFADEGVQAQVAYASKAFSCIAMFQLAEELGLSLDVVSGGE 91
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV--FVNVDSEFDLENIVVASRIAGKKV 208
L A +AG + F+GN K ++ +A + G+ FV VD+ ++L+ +
Sbjct: 92 LYTAQQAGVSMERIHFHGNNKSRAEIEMAVEAGIGCFV-VDNFYELDLLADICEQKRATA 150
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP-NELKLVGAHCHLGS 267
N+LLRI P V+ H Y++TG ++SKFG Q L KA + + L+G H H+GS
Sbjct: 151 NILLRITPGVEAHTHDYISTGQEDSKFGFDLVSGQATLAVKKALAVDSIHLLGVHSHIGS 210
Query: 268 TITKVDIFRDAAVLMVNYIDKIRA-QGFEVDYLNIGGGLGIDYYHTGAVLPKP-----RN 321
I + F A + ++ R GFE LN+GGG GI Y P+P +
Sbjct: 211 QIFETTGFVMAVEKIFEHLVTWREDHGFEPSVLNLGGGFGIRYIEGDT--PRPVGDYVKE 268
Query: 322 LIDTVRELVLSRNLNL---IIEPGRSLIANTCCLVNHVTGVKT-NGTKNFIVIDGSMAEL 377
+I V++ + +++ IEPGRSL+ + + + K ++++ +DG M++
Sbjct: 269 MIRAVKQQIAEHEMSMPEIWIEPGRSLVGDAGTTLYTIGSRKEIPNVRHYLSVDGGMSDN 328
Query: 378 IRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDA 437
+RP+LY A L + + + F V G CES D L + LP + L V
Sbjct: 329 LRPALYQAEYEGALANRV-NEQPVGMFSVAGKCCESGDMLIWDLPLPEANHEDILAVFCT 387
Query: 438 GAYCMSMASTYNLKMRPPEYWVR 460
GAY SMA+ YN RPP +V
Sbjct: 388 GAYGYSMANNYNRIPRPPVVFVE 410
>sp|P41023|DCDA_BACMT Diaminopimelate decarboxylase OS=Bacillus methanolicus GN=lysA PE=3
SV=1
Length = 432
Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 203/402 (50%), Gaps = 21/402 (5%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANNNYKILEHLRKL 139
D +E +K P Y+Y I +K + G+ + + YA KA + +++ +
Sbjct: 21 DTIELAQKYGTPLYVYDVALIRERARGFKNTFDELGIKAQVAYASKAFSTVAMIQLAEEE 80
Query: 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIV 198
G +VSG EL AL AGF K F+GN K +L +A + + + VD+ +L+ I
Sbjct: 81 GLSLDVVSGGELYTALVAGFPVHKIHFHGNNKSRAELEMALEHQIGCIVVDNFHELDLID 140
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNEL 256
K N+LLR+ P ++ H Y+ TG ++SKFG ++N + + L + + N +
Sbjct: 141 SICSEKNVKTNILLRVTPGIEAHTHDYILTGQEDSKFGFDLQNGQAEKALQ-IALNSNFV 199
Query: 257 KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAV 315
+++G HCH+GS I F AA + + + + + +E LN+GGG GI Y
Sbjct: 200 EVLGVHCHIGSQIFDTTGFVLAARKIFEKLKEWKDRLSYEPKVLNLGGGFGIRYTEEDDP 259
Query: 316 LPKP---RNLIDTVRELVLSRNLNL---IIEPGRSLIANTCCLVNHVTGVK-TNGTKNFI 368
+P + +I+ V++ V + ++ + IEPGRSL+ + + + K ++++
Sbjct: 260 IPASQYVKEIINEVKKQVSAYSMKMPEIWIEPGRSLVGDAGTTLYQIGSRKDVPNVRHYV 319
Query: 369 VIDGSMAELIRPSLYDA-YQHIELVSP-APQDAEISKFDVVGPVCESADFLGKERELPTP 426
+DG M++ IRP+LY+A Y+ + P A D +S + G CES D L + LP
Sbjct: 320 AVDGGMSDNIRPALYNAKYEAVLANKPLAKADETVS---IAGKCCESGDMLIWDLPLPKA 376
Query: 427 DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIIL 468
D L V GAY SMA+ YN RP +V + S++++
Sbjct: 377 DSDDILAVFCTGAYGYSMANNYNRIPRPAVVFVENGESMLVV 418
>sp|Q55484|DCDA_SYNY3 Diaminopimelate decarboxylase OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lysA PE=3 SV=1
Length = 469
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 186/389 (47%), Gaps = 38/389 (9%)
Query: 93 PFYLYSKPQITRNVEAYKQALE----GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSG 148
P Y+ + + + + Y+Q+ + G + +I YA KA + ++ + G G +VSG
Sbjct: 58 PLYILDETTLRQAAQQYRQSFQAHYPGSSQVI-YASKAWSCLAVVAIAAQEGLGFDVVSG 116
Query: 149 NELRLALRA----GFDPT----KCIFNGNGKLLEDLVLAAQEGVFVN----VDSEFDLEN 196
EL + A G+D K F+GN K +++L QE + +N VD+ +LE
Sbjct: 117 GELFTTVSALKQLGWDEAEIAEKIYFHGNNKSVQEL----QEAIAINCTIIVDNWLELET 172
Query: 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL 256
+ + +G V ++LR+ P ++ H Y+ TG+ +SKFG +L+ + P+ L
Sbjct: 173 LTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFTYIAQQPS-L 231
Query: 257 KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL 316
+G H H+GS I + +D ++V + K G + LNIGGGLGI Y +
Sbjct: 232 HCLGLHAHIGSQIFERQPHKDLGEVLVQWFTKGLTYGLPLTELNIGGGLGICYTESD--- 288
Query: 317 PKPRNLIDTVRELVLS-------RNL---NLIIEPGRSLIANTCCLVNHVTGVK-TNGTK 365
P ++ + + +S +N+ LI EPGRSL+ + C V G K +
Sbjct: 289 -DPPSIEEWAQVAAISVAKACDRQNIPYPKLIAEPGRSLVGSACVTAYRVGGRKVVPNIR 347
Query: 366 NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPT 425
+I +DG M++ RP Y + + L + D V G CES D L K+ LP
Sbjct: 348 TYISVDGGMSDNPRPITYQSVYRVALANRM-NDEITETVTVAGKHCESGDILVKDVALPA 406
Query: 426 PDRGAGLVVHDAGAYCMSMASTYNLKMRP 454
+ G +VV GAY SMAS YN RP
Sbjct: 407 AEPGDIMVVAATGAYNHSMASNYNRLGRP 435
>sp|E0IWI3|DCDA_ECOLW Diaminopimelate decarboxylase OS=Escherichia coli (strain ATCC 9637
/ CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
GN=lysA PE=1 SV=1
Length = 420
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 180/383 (46%), Gaps = 34/383 (8%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P ++Y I R + A KQ ++ +A KA +N IL +R+ G VS E+
Sbjct: 27 PVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIE 81
Query: 153 LALRAGFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKV 208
AL AG++P +F + L ++ + VN S L+ + S G +V
Sbjct: 82 RALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVS--PGHRV 139
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
LR+NP TG +NSK GI L LD ++ H L+LVG H H+GS
Sbjct: 140 --WLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRH--HLQLVGIHMHIGSG 195
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTV 326
+ + + ++ I+ G ++ ++ GGGL + Y + L +
Sbjct: 196 VDYAHLEQVCGAMVRQVIEF----GQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAA 251
Query: 327 RELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
RE + L + L IEPGR L+A + L+ V VK G+++F+++D +L+RP++Y
Sbjct: 252 REQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMY 311
Query: 384 DAYQHIELVSPAPQDAEIS---KFDVVGPVCESADFLGKE-------RELPTPDRGAGLV 433
+Y HI ++ + E + + V GP+CES D ++ R LP G LV
Sbjct: 312 GSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLV 371
Query: 434 VHDAGAYCMSMASTYNLKMRPPE 456
+HD GAY SM+S YN + PE
Sbjct: 372 LHDTGAYGASMSSNYNSRPLLPE 394
>sp|P00861|DCDA_ECOLI Diaminopimelate decarboxylase OS=Escherichia coli (strain K12)
GN=lysA PE=1 SV=1
Length = 420
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 114/383 (29%), Positives = 180/383 (46%), Gaps = 34/383 (8%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P ++Y I R + A KQ ++ +A KA +N IL +R+ G VS E+
Sbjct: 27 PVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIE 81
Query: 153 LALRAGFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKV 208
AL AG++P +F + L ++ + VN S L+ + S G +V
Sbjct: 82 RALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVS--PGHRV 139
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
LR+NP TG +NSK GI L LD ++ H L+LVG H H+GS
Sbjct: 140 --WLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRH--HLQLVGIHMHIGSG 195
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTV 326
+ + + ++ I+ G ++ ++ GGGL + Y + L +
Sbjct: 196 VDYAHLEQVCGAMVRQVIEF----GQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAA 251
Query: 327 RELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
RE + L + L IEPGR L+A + L+ V VK G+++F+++D +L+RP++Y
Sbjct: 252 REQIARHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMY 311
Query: 384 DAYQHIELVSPAPQDAEIS---KFDVVGPVCESADFLGKE-------RELPTPDRGAGLV 433
+Y HI ++ + E + + V GP+CES D ++ R LP G LV
Sbjct: 312 GSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLV 371
Query: 434 VHDAGAYCMSMASTYNLKMRPPE 456
+HD GAY SM+S YN + PE
Sbjct: 372 LHDTGAYGASMSSNYNSRPLLPE 394
>sp|Q8K9C4|DCDA_BUCAP Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=lysA PE=3 SV=1
Length = 415
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 184/379 (48%), Gaps = 36/379 (9%)
Query: 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150
+ PF++Y I + + K+ I+ +A KA +N IL +++ VS E
Sbjct: 25 QSPFWVYDSNIIHKKINLLKEF-----DIVRFAQKACSNIHILRLMKQKNIKVDAVSLGE 79
Query: 151 LRLALRAGFDPT--KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKV 208
+ AL AGF P + IF + E L + VN S LE + S G
Sbjct: 80 IERALVAGFKPNSNEIIFTADLFDEETLSKVIDFKIPVNAGSIDMLEQLGKLS--PGH-- 135
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
+V LRINP TG +NSK GI N +L + +K + +LKL+G H H+GS
Sbjct: 136 HVWLRINPGFGHGHSKKTNTGGENSKHGIWNPRLA--IPIIKKY--KLKLIGLHMHIGSG 191
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI--DTV 326
+ + + + I+K ++ +++ GGGL I Y + + I D
Sbjct: 192 VNYKHLKKVGQAM----IEKAMEINEKILFISAGGGLPIPYTFNEKPIDTKKYFIIWDEA 247
Query: 327 RELVLSRNLN----LIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL 382
R+ + SR LN L IEPGR L+A + L++ V +K G KNF++ID +L+RP++
Sbjct: 248 RKKI-SRFLNTPIQLEIEPGRFLVAESGILISQVRAIKKMGDKNFVLIDAGFNDLMRPTM 306
Query: 383 YDAYQHIELVSPAPQDA-EISKFDVV--GPVCESAD-FLGKE------RELPTPDRGAGL 432
Y +Y H+ +V+ ++ E D + GP+CES D F KE R+LP G L
Sbjct: 307 YGSYHHVSVVTKDDRNIHETETIDTIIGGPLCESGDIFTQKEGGNITTRKLPILKIGDYL 366
Query: 433 VVHDAGAYCMSMASTYNLK 451
+ HD GAY SM+S YN +
Sbjct: 367 IFHDVGAYGASMSSNYNTR 385
>sp|P57513|DCDA_BUCAI Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=lysA PE=3 SV=1
Length = 415
Score = 139 bits (351), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 200/404 (49%), Gaps = 35/404 (8%)
Query: 81 RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLG 140
R++D+++ PF++Y I + + ++ +I +A K+ +N IL ++
Sbjct: 16 RIKDLIKKYSP-PFWVYDADIIYKKINLLRKF-----DVIRFAQKSCSNINILRLMKNKN 69
Query: 141 CGAVLVSGNELRLALRAGFDPT--KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIV 198
VS E+ AL +GF P+ + IF + E L+ A+ + VN S L+ +
Sbjct: 70 VKIDAVSLGEIERALLSGFKPSTNEIIFTADILDEETLLKVAKYKIPVNAGS---LDMLK 126
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL 258
+I+ +V LRINP TG +NSK GI + + + +K + +LKL
Sbjct: 127 QLGKISPGH-HVWLRINPRFGYGHSKKTNTGGENSKHGIWHPEQA--IPIIKKY--KLKL 181
Query: 259 VGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL-- 316
+G H H+GS + + + + + M+ Y ++ + + +++GGGL I Y +
Sbjct: 182 IGLHMHIGSGVNYLHL-KKVSQAMIKYAFQLNQK---ISSISVGGGLPIPYKFNDQPIDI 237
Query: 317 PKPRNLIDTVRELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
K L D R+ + L + L IEPGR L+A + L++ V K G KNF+++D
Sbjct: 238 KKYFMLWDIARKKISKFLGEKIELEIEPGRFLVAESGILISKVWATKKMGNKNFVLVDVG 297
Query: 374 MAELIRPSLYDAYQHIELV---SPAPQDAEISKFDVVGPVCESAD-FLGKE------REL 423
+L+RP++Y +Y HI ++ + E V GP+CES D F KE R+L
Sbjct: 298 FNDLMRPTMYGSYHHISVIYGDDRKMNEKETIDTVVAGPLCESGDIFTQKEGGTVQTRKL 357
Query: 424 PTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIII 467
PT G L+ HD GAY +M+S YN + PE +++ SI+I
Sbjct: 358 PTIKVGDYLIFHDTGAYGAAMSSNYNTRPLIPEILLKNNDSIVI 401
>sp|Q9X5M1|DCDA_MYCS2 Diaminopimelate decarboxylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=lysA PE=3 SV=1
Length = 474
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 194/408 (47%), Gaps = 28/408 (6%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
+ ADG + V V D+ P ++ + A G + YA KA
Sbjct: 43 RGADGVVTIAGVPVTDLAAKF-GTPLFVIDEDDFRTRCRDIAAAFGG-GQYVHYAAKAFL 100
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVN 187
+I + + G + +G EL +AL AGF ++ +GN K + +L A Q GV V
Sbjct: 101 CSEIARWVDEEGLSLDVATGGELAVALHAGFPASRITVHGNNKSVAELTAAVQAGVGHVV 160
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247
+DSE ++E + + AG +VL+R+ V+ H +++T +++ KFG+ + ++
Sbjct: 161 LDSEIEIERLDQIAGAAGVVQDVLVRVTVGVEAHTHEFISTAHEDQKFGL-SLATGAAMN 219
Query: 248 AVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFE----VDYLN 300
A++ + L+LVG H H+GS I V F AA ++ + + A+ G E + ++
Sbjct: 220 AIRRVFATDNLRLVGLHSHIGSQIFDVAGFEIAAHRVIGLLRDVVAEFGVEKTSQMSIVD 279
Query: 301 IGGGLGIDYY-HTGAVLPKPRNLIDTVRELVLSRNL-------NLIIEPGRSLIANTCCL 352
+GGGLGI Y H P + L D + E+V + + L++EPGR++
Sbjct: 280 LGGGLGISYLPHDDP--PPMKELADKLLEIVRTESAAVGLPTPKLVVEPGRAIAGPGTIT 337
Query: 353 VNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVV 407
+ V VK + ++ +DG M++ IR SLY A LVS DA + +V
Sbjct: 338 LYEVGTVKDVAVSQTAHRRYVSVDGGMSDNIRTSLYAAQYDARLVSRV-SDAPPALARIV 396
Query: 408 GPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
G CES D + ++ + L+ V GAYC SM+S YNL RP
Sbjct: 397 GKHCESGDIVVRDTWVSDDIAPGDLIGVAATGAYCYSMSSRYNLLCRP 444
>sp|O69203|DCDA_ACTPA Diaminopimelate decarboxylase OS=Actinosynnema pretiosum subsp.
auranticum GN=lysA PE=3 SV=1
Length = 437
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 171/336 (50%), Gaps = 28/336 (8%)
Query: 147 SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAG 205
S EL +A GF + + +GN K EDL A GV V VDS ++E + +A
Sbjct: 103 SAGELAIARSVGFPAERVLLHGNVKTPEDLKAALGYGVGRVVVDSFDEIEQL---GALAE 159
Query: 206 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR---NEKLQWFLDAVKAHPNELKLVGAH 262
+VL+R+ P VDP+ H VATG ++ KFG + L+ L V+ P+ L+LVG H
Sbjct: 160 GPQDVLVRVTPGVDPRTHRAVATGVEDQKFGFSLAGGDALEAVLRVVE-QPS-LRLVGLH 217
Query: 263 CHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY------YHTGAVL 316
CH+GS + V ++ +AA +V I G ++ L++GGG + Y + G
Sbjct: 218 CHVGSQVRHVAVYEEAARRVVGLIASC---GVRIEQLDLGGGFAVPYLPGEGEFDLGGFA 274
Query: 317 PKPRNLID---TVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS 373
+ R + +R + + R L IEPGR+++A + V VK + F+ +DG
Sbjct: 275 HRVRVALSHECALRRVPVPR---LSIEPGRAVVARAGVTLYRVAAVKRGVRRVFVAVDGG 331
Query: 374 MAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR-GAGL 432
M++ RP+LY + + LV + A ++ VVG CE+ D L ++ LP R G L
Sbjct: 332 MSDNPRPALYGSRYAVRLVRRGGRRAPVT---VVGRHCEAGDVLAEDVPLPEDVRAGDLL 388
Query: 433 VVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIIL 468
V GAY ++AS YN RPP VR ++ +++
Sbjct: 389 AVPVTGAYHHALASNYNAVGRPPVVGVRDGVARVLV 424
>sp|P09890|DCDA_CORGL Diaminopimelate decarboxylase OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=lysA PE=2 SV=1
Length = 445
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 196/419 (46%), Gaps = 26/419 (6%)
Query: 69 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN 128
++ DG + V + D+ E P ++ + A G ++ YA KA
Sbjct: 21 RQEDGVVTVAGVPLPDLAEEY-GTPLFVVDEDDFRSRCRDMATAFGGPGNV-HYASKAFL 78
Query: 129 NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVN 187
I + + G + S NEL +AL AGF ++ +GN K +E L Q GV V
Sbjct: 79 TKTIARWVDEEGLALDIASINELGIALAAGFPASRITAHGNNKGVEFLRALVQNGVGHVV 138
Query: 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFL 246
+DS +LE + + GK +VL+R+ P ++ H ++AT +++ KFG +
Sbjct: 139 LDSAQELELLDYVAAGEGKIQDVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGSAFEA 198
Query: 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGL 305
+ L LVG HCH+GS + + F+ AA ++ +I ++ G + L++GGG
Sbjct: 199 AKAANNAENLNLVGLHCHVGSQVFDAEGFKLAAERVLGLYSQIHSELGVALPELDLGGGY 258
Query: 306 GIDYYHTGAVLPKPRNLIDTVRELV-----LSRNLNL-----IIEPGRSLIANTCCLVNH 355
GI Y +P N+ + +L+ ++ L + ++EPGR++ + +
Sbjct: 259 GIAY----TAAEEPLNVAEVASDLLTAVGKMAAELGIDAPTVLVEPGRAIAGPSTVTIYE 314
Query: 356 VTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPV 410
V K + T+ +I +DG M++ IRP+LY + +VS + +S +VG
Sbjct: 315 VGTTKDVHVDDDKTRRYIAVDGGMSDNIRPALYGSEYDARVVSRFAEGDPVST-RIVGSH 373
Query: 411 CESADFLGKERELPTP-DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIIL 468
CES D L + P+ G L + GAYC +M+S YN RP VR+ S ++L
Sbjct: 374 CESGDILINDEIYPSDITSGDFLALAATGAYCYAMSSRYNAFTRPAVVSVRAGSSRLML 432
>sp|Q9ZBH5|DCDA_STRCO Diaminopimelate decarboxylase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=lysA PE=3 SV=1
Length = 440
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 174/385 (45%), Gaps = 33/385 (8%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P +LY I ++ ++ +I YA KA +N IL +R+ G VS E+
Sbjct: 34 PLWLYDAATIRAQIDRLRRF-----DVIRYAQKACSNLHILRLMREEGVHVDAVSEGEIE 88
Query: 153 LALRAGF----DPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKV 208
AL AG+ D +F + L + G+ VN S L+ + A+
Sbjct: 89 RALAAGYRVGGDDEPIVFTADLLNRSTLRRVVELGIPVNAGSPQMLDQVGRAA----PGH 144
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
V +RINP TG ++SK GI +E L+ L V H L LVG H H+GS
Sbjct: 145 PVWIRINPGFGHGHSRKTNTGGEHSKHGIWHEHLEESLALVDRH--GLDLVGLHMHIGSG 202
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTV 326
+ + + + ++R G ++ ++ GGGL + Y + R L D
Sbjct: 203 VD----YGHLESVCETMVKQVRMAGRDIRAISAGGGLSVPYTPGDPEIDTDRYFELWDAA 258
Query: 327 R-ELV--LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383
R ELV L + L IEPGR L+A L V K G+ F+++D +L+RP++Y
Sbjct: 259 RRELVSELGHPVRLEIEPGRFLVAGAGVLAAEVRAQKPVGSNYFVLVDAGFNDLMRPAMY 318
Query: 384 DAYQHIELVSP--APQDAEISKFDVVGPVCESADFL-----GKERELPTP--DRGAGLVV 434
+ + ++ AP+ ++ + GP+CES D G +P P D G +V
Sbjct: 319 GSNHRVSVLDADGAPRASDARDTVLAGPLCESGDVFTQVEGGDVEPVPVPRTDVGDLVVF 378
Query: 435 HDAGAYCMSMASTYNLKMRPPEYWV 459
HD GAY SM+STYN + PE V
Sbjct: 379 HDTGAYGASMSSTYNSRPLIPEVLV 403
>sp|Q89AC6|DCDA_BUCBP Diaminopimelate decarboxylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=lysA PE=3 SV=1
Length = 418
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 183/399 (45%), Gaps = 49/399 (12%)
Query: 84 DVMETVEK--RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC 141
D+++ V K P ++Y I + ++ Q +I +A K+ +N IL K
Sbjct: 15 DILKIVSKYGTPLWVYDSNIIVKKIKELSQF-----DVIRFAQKSCSNIHILNLFYKYNV 69
Query: 142 GAVLVSGNELRLALRAGFDPT---KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIV 198
VS E+ AL + + T +F + E L Q + +N+ S LE +
Sbjct: 70 KIDAVSLGEIERALISKYRFTMDQDVVFTSDIIERETLNKVVQYKIPINIGSIDMLEQV- 128
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE--L 256
+I+ N+ LRINP TG +NSK GI W ++ + +
Sbjct: 129 --GKISPGH-NIWLRINPKFGHGHSKKTNTGGENSKHGI------WDINLAFPYITKYNF 179
Query: 257 KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL 316
KL+G H H+GS + + R + ID++ F++ ++ GGGL + Y H
Sbjct: 180 KLIGLHMHIGSGVDYCHLKRVCKAM----IDQVLQCKFKIHVISAGGGLTVPY-HCNDEP 234
Query: 317 PKPRN---LIDTVRELV---LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVI 370
+N L + R+++ L+R + L IEPGR L+A + LV+ + +K + FI++
Sbjct: 235 VNVKNYFFLWNKARKIISNYLNRPIRLEIEPGRFLVAESGILVSEIRVIKKTNNRTFILV 294
Query: 371 DGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFD------VVGPVCESADFLG------ 418
D +LIRP++Y +Y HI ++ P+D +D V GP+CES D
Sbjct: 295 DSGFNDLIRPAMYGSYHHISVI---PRDGRCVNYDDTIEAVVCGPLCESGDVFTQNEYGD 351
Query: 419 -KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPE 456
K R LP G LV HD GAY SM+S YN + PE
Sbjct: 352 IKTRILPNVQIGDFLVFHDTGAYGASMSSNYNSRPLIPE 390
>sp|P0A5M4|DCDA_MYCTU Diaminopimelate decarboxylase OS=Mycobacterium tuberculosis GN=lysA
PE=1 SV=1
Length = 447
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 22/360 (6%)
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G + + YA KA ++ + + G + +G EL +AL A F P + +GN K +
Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVS 121
Query: 175 DLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233
+L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++
Sbjct: 122 ELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQ 181
Query: 234 KFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 291
KFG+ + AV+ + L+LVG H H+GS I VD F AA ++ + +
Sbjct: 182 KFGLSVAS-GAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVG 240
Query: 292 Q-----GFEVDYLNIGGGLGIDYYHT------GAVLPKPRNLIDTVRELVLSRNLNLIIE 340
+ ++ +++GGGLGI Y + + K ++ V L++E
Sbjct: 241 EFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVE 300
Query: 341 PGRSLIANTCCLVNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA 395
PGR++ + V VK + ++ +DG M++ IR +LY A + LVS
Sbjct: 301 PGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLVSRV 360
Query: 396 PQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
DA +VG CES D + ++ +P R LV V GAYC S++S YN+ RP
Sbjct: 361 -SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRP 419
>sp|P0A5M5|DCDA_MYCBO Diaminopimelate decarboxylase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=lysA PE=3 SV=1
Length = 447
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 173/360 (48%), Gaps = 22/360 (6%)
Query: 115 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLE 174
G + + YA KA ++ + + G + +G EL +AL A F P + +GN K +
Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVS 121
Query: 175 DLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233
+L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++
Sbjct: 122 ELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQ 181
Query: 234 KFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 291
KFG+ + AV+ + L+LVG H H+GS I VD F AA ++ + +
Sbjct: 182 KFGLSVAS-GAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVG 240
Query: 292 Q-----GFEVDYLNIGGGLGIDYYHT------GAVLPKPRNLIDTVRELVLSRNLNLIIE 340
+ ++ +++GGGLGI Y + + K ++ V L++E
Sbjct: 241 EFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDESTAVGLPTPKLVVE 300
Query: 341 PGRSLIANTCCLVNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPA 395
PGR++ + V VK + ++ +DG M++ IR +LY A + LVS
Sbjct: 301 PGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLVSRV 360
Query: 396 PQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
DA +VG CES D + ++ +P R LV V GAYC S++S YN+ RP
Sbjct: 361 -SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRP 419
>sp|Q8RQM6|DCDA_COREF Diaminopimelate decarboxylase OS=Corynebacterium efficiens (strain
DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=lysA PE=3 SV=1
Length = 459
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/418 (27%), Positives = 187/418 (44%), Gaps = 34/418 (8%)
Query: 80 VRVQDVMETVEKRPF----YLYSKPQITRNVEAYKQALEGLNSIIG------YAIKANNN 129
VR +D + TV P Y P + + ++ + S G YA KA +
Sbjct: 34 VRQEDGVVTVAGVPLPDLAEEYGTPLFVVDEDDFRARCRDMASAFGGPDRVHYASKAFLS 93
Query: 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNV 188
+ + + G + S NEL +AL A F + +GN K L + + V +
Sbjct: 94 KTVARWVDEEGLSLDIASENELGIALAADFPGERITAHGNNKDASFLRACVRNNLGHVVL 153
Query: 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQWFLD 247
DS +LE + + GK VL+R+ P ++ H ++AT +++ KFG +
Sbjct: 154 DSAQELELLDYIAAGEGKVQPVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGAAFDAA 213
Query: 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLG 306
+ L+LVG HCH+GS + F AA ++ +I + G + L++GGG G
Sbjct: 214 RAAVNAENLELVGLHCHVGSQVFDAQGFSLAAERVLELYSRIHDELGVTLAELDLGGGYG 273
Query: 307 IDYYHTGAVLPKPRNLIDTVRELVLS----------RNLNLIIEPGRSLIANTCCLVNHV 356
I Y +P N+++ +L+ + +++EPGR++ + V V
Sbjct: 274 IAY----TAAEEPLNVVEVAHDLLTAVGKTAAELGIEAPTVLVEPGRAIAGPSTVTVYEV 329
Query: 357 TGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVC 411
+K T+ +I +DG M++ IRP+LY A +VS + E + VVG C
Sbjct: 330 GTIKDVDVDDETTRRYISVDGGMSDNIRPALYGAEYDARVVSRFTE-GETTNTRVVGSHC 388
Query: 412 ESADFLGKERELPTP-DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIIL 468
ES D L E P+ G L + GAYC +M+S YN RP VR+ + ++L
Sbjct: 389 ESGDILINEATYPSDIHTGDLLALAATGAYCYAMSSRYNAFARPAVVSVRAGAAKLML 446
>sp|P31851|TABA_PSESZ Protein TabA OS=Pseudomonas syringae pv. tabaci GN=tabA PE=3 SV=1
Length = 420
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 165/374 (44%), Gaps = 28/374 (7%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
PF++Y + I + QA +A+KA IL L K G G S EL
Sbjct: 25 PFHIYDERAIVQTHRNVAQAFADSAFRQYFAVKALPTPAILSLLLKEGSGLDCSSPVELM 84
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLL 212
LA R G +F N L + +A Q G V D LE ++ I V
Sbjct: 85 LAERLGARGDDIVFTSNNTSLSEYQMALQAGALVTFDDRSMLEQVIALPDI------VAF 138
Query: 213 RINPDVDPQVHPYVA----TGN-KNSKFGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLG 266
R++P H +A GN + SKFGI E +Q + +A + G C
Sbjct: 139 RVSP------HGVIARSSQMGNAQQSKFGIPEAELVQSYREAWDRGARRFGIHGMMC--- 189
Query: 267 STITKVDIFRDAAVLMVNYIDKI-RAQGFEVDYLNIGGGLGIDYYHTGAVL---PKPRNL 322
+ ++ A V ++ ++ R G E++Y+NIGGGLGI Y L L
Sbjct: 190 ANELSLEAAVQAGVQVIEVGARVAREAGIELEYINIGGGLGIPYRIDDQALDLTAYADAL 249
Query: 323 IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL 382
+++ L++E GR + LV+ V + G + + +D SM+ L+RP L
Sbjct: 250 KRALKQAFPHNTPKLLMELGRYISGPHGVLVSRVINRCSKG-REIVGLDASMSALMRPGL 308
Query: 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCM 442
Y AY H+ L P FDVVG +CE+ D +R LP+P G ++HD GA+
Sbjct: 309 YGAYHHLTL--PFADQRPEGVFDVVGALCENFDKFAVDRLLPSPLIGDLALIHDTGAHGH 366
Query: 443 SMASTYNLKMRPPE 456
+M TYN ++RP E
Sbjct: 367 AMGFTYNGRLRPAE 380
>sp|Q50140|DCDA_MYCLE Diaminopimelate decarboxylase OS=Mycobacterium leprae (strain TN)
GN=lysA PE=3 SV=2
Length = 472
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 173/358 (48%), Gaps = 32/358 (8%)
Query: 122 YAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181
YA KA +I + + G + SG EL +AL A F P + +GN K + +L A +
Sbjct: 94 YAAKAFLCTEIARWIDEEGLSLDVCSGGELAVALHASFPPERISLHGNNKSVAELKDAVK 153
Query: 182 EGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240
GV ++ +DS ++E + + AG +VL+R+ V+ H ++AT +++ KFG+
Sbjct: 154 AGVGYIVLDSTTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFIATAHEDQKFGLSVA 213
Query: 241 KLQWFLDAVKAHPNE-LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-----GF 294
+ + L+LVG H H+GS I V F AA ++ + I +
Sbjct: 214 SGAAMAAVRRVFATDNLRLVGLHSHIGSQIFDVAGFELAAHRVIGLLCDIVGEFDPEKTA 273
Query: 295 EVDYLNIGGGLGIDYYHTGAVLP--KPRNLIDTVREL--VLSRNL--------NLIIEPG 342
++ +++GGGLGI Y LP P + + +L ++S L++EPG
Sbjct: 274 QLSIVDLGGGLGISY------LPDDDPPPIFELAAKLGAIVSNESAAVGLPVPKLMVEPG 327
Query: 343 RSLIANTCCLVNHVTGVK-----TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ 397
R++ + V +K + ++ IDG M++ IR +LYDA + LVS
Sbjct: 328 RAIAGPGTITLYEVGTIKDVDVSATAHRRYVSIDGGMSDNIRTALYDAQYDVRLVSRT-S 386
Query: 398 DAEISKFDVVGPVCESADFLGKERELPTPDRGAGLV-VHDAGAYCMSMASTYNLKMRP 454
DA + +VG CES D + ++ +P + LV V GAYC S++S YN+ RP
Sbjct: 387 DAPAAPASIVGKHCESGDIVVRDTWVPDDLKPGDLVGVAATGAYCYSLSSRYNMLGRP 444
>sp|Q2L4H3|BTRK_BACCI L-glutamyl-[BtrI acyl-carrier protein] decarboxylase OS=Bacillus
circulans GN=btrK PE=1 SV=2
Length = 428
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 171/379 (45%), Gaps = 22/379 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGY--AIKANNNYKILEHLRKLGCGAVLVSGNE 150
PFYLY I + Y+Q N I + ++KANNN + + R+ G G + S E
Sbjct: 18 PFYLYDGDFIEAH---YRQLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGE 74
Query: 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVN 209
L LA AGF IF+G GK +L +A Q G++ + +S +L I + K
Sbjct: 75 LALARHAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTAR 134
Query: 210 VLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269
V +RINPD + G +FG+ L +DAV++ K +G H + G+
Sbjct: 135 VAIRINPDKSFGSTA-IKMGGVPRQFGMDESMLDAVMDAVRS-LQFTKFIGIHVYTGTQN 192
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAVL---PKPRNLIDT 325
D ++ V+ I + G + +N+GGG G+ Y+ L R + D
Sbjct: 193 LNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY 252
Query: 326 VRELVLSR--NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM----AELIR 379
V+E +R IIE GR L+A V V K + + F+++DG M A R
Sbjct: 253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFR 312
Query: 380 PSLYDAYQHIELVSPAPQDA---EISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHD 436
+ +E + P +D+ E+ K + GP+C D LGK+ +P G + V +
Sbjct: 313 GRSMRSNYPMEYI-PVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLN 371
Query: 437 AGAYCMSMASTYNLKMRPP 455
+GAY +S + + L P
Sbjct: 372 SGAYGLSFSPVHFLGHPTP 390
>sp|Q9HK20|DCDA_THEAC Diaminopimelate decarboxylase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=lysA PE=3 SV=2
Length = 402
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 165/369 (44%), Gaps = 21/369 (5%)
Query: 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELR 152
P +YS+ +I N+ ++A E ++ Y++KAN+N +I+E + + G+ S E+
Sbjct: 30 PVIIYSRARIVSNIRRIREAYENRVRML-YSVKANDNPRIIEIMHQESIGSDSASPMEIM 88
Query: 153 LALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLL 212
+++ +G P +++ N DL A G+ +N ++ ++ K +
Sbjct: 89 MSIFSGIPPEDILYSPNNASEYDLNFALDRGIAINFNT------FTQYRKMREKPERISF 142
Query: 213 RINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKV 272
RINP TG +KFGI + L KA + ++ G H +GS
Sbjct: 143 RINPGFGMGEFAGTTTGGARTKFGIDPDAA--ILAYRKAREDGIREFGIHMMIGSNNRDH 200
Query: 273 DIFRDAAVLMVNYIDKI-RAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331
+A D+I R G + ++GGGLGI Y L ++E
Sbjct: 201 VKIAEAYSNFFRIADRIGREAGVSFQFADVGGGLGIPYVQGENELDIAALGSAVLKEFDR 260
Query: 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
+L++EPGR L+ + +V V V NG F D M IRP+LY A I
Sbjct: 261 YHFGDLVLEPGRYLVGDAGIIVGTVNDVH-NG---FAGTDIGMNLNIRPALYGARHTI-- 314
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDAGAYCMSMASTYNL 450
P + E K V G +CE+ D +G L DR ++V DAGAY SM+S YN
Sbjct: 315 -IPVGERVEGEKITVTGQICENTDRIGDTAWRLSEGDR---IMVLDAGAYVYSMSSRYNG 370
Query: 451 KMRPPEYWV 459
+ RPPE +
Sbjct: 371 RPRPPEIMI 379
>sp|Q54UF3|DCOR_DICDI Probable ornithine decarboxylase OS=Dictyostelium discoideum GN=odc
PE=3 SV=1
Length = 461
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 95/401 (23%), Positives = 167/401 (41%), Gaps = 42/401 (10%)
Query: 82 VQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC 141
+ +++ ++ F++ I + + + + L + YA+K N +L L LG
Sbjct: 75 ITSLLDKTDRDAFFVADVGVIIKQWQKWVKNLPNVKPY--YAVKCNPTVGVLRVLDALGT 132
Query: 142 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVA 200
S E+ L G DP++ I+ K + L A V + D+ +LE I
Sbjct: 133 NYDCASRTEIESVLNLGVDPSRIIYANPCKQISALKFARAHNVKLMTFDNLSELEKI--- 189
Query: 201 SRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVG 260
+ ++LRI PD V + SKFG+ + L+ K LK+VG
Sbjct: 190 -EKFFPEAELVLRIAPDDSKSVMRF------GSKFGVHIDDCNDLLEMAKEM--NLKVVG 240
Query: 261 AHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR 320
H+GS D + DA +++ + D + E+ +++GGG TG+ K
Sbjct: 241 VSFHVGSGCQSGDSYADALIMVKSVFDMAKKLNMELTLVDVGGGF------TGSDDEKFN 294
Query: 321 NLIDTVREL---VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKT--------------NG 363
+RE + S N+ +I EPGR A + L V ++ N
Sbjct: 295 AFTKVIREKTAELFSPNVKIIAEPGRYFAAQSHTLAVTVISKRSIKQEDNRQHPRRTSNN 354
Query: 364 TK--NFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKER 421
+ N+ + DG + +D Y +E + P + + + GP C+S D + K+
Sbjct: 355 MRQYNYYLADGVYGSF-NNTKFD-YAKVEPLLLKPSTKQPTPCTLFGPTCDSIDVVLKDT 412
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL 462
++P G L D GAY ++ +S++N PP Y+ S+
Sbjct: 413 QIPELKIGDWLYFQDMGAYTIASSSSFNGFCPPPVYYYNSI 453
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (Fragment) OS=Gallus gallus GN=ODC1 PE=2
SV=1
Length = 450
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 170/406 (41%), Gaps = 43/406 (10%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ +++ L
Sbjct: 15 DQKINEVSSSDDKDAFYVADLGDIVKKHMRWHKALPRVTPF--YAVKCNDSEAVVKTLAV 72
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
LG G S E++L G P + I+ K L + AA GV + DSE +L I
Sbjct: 73 LGAGFDCASKTEIQLVQSIGVPPERIIYANPCKQLSQIKHAANSGVRMMTFDSEVELMKI 132
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
K +LLRI D D + A + KFG + + L+ +A +L
Sbjct: 133 ARPH----PKAKLLLRITTD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELDLA 180
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG------LGIDYYH 311
+VG H+GS T + F A D GF + L+IGGG + + +
Sbjct: 181 IVGVSFHVGSGCTDPETFVQAISDARCVFDMGAELGFNMYLLDIGGGFPGSEDVKLKFEE 240
Query: 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK------TNGTK 365
+V+ + + L + +I EPGR +A+ L ++ K T
Sbjct: 241 ITSVINPALD-----KYFPLDSEVTIIAEPGRYYVASAFTLAVNIIAKKIVSKEQTGSDD 295
Query: 366 NFIVIDGSMAELIRPSLYDAYQ-------HIELV---SPAPQDAEISKFDVVGPVCESAD 415
V D ++ + +Y ++ H++ V P P D S + GP C+ D
Sbjct: 296 EDDVNDKTLMYYVNDGVYGSFNCILYDHAHVKPVLQKRPKPDDGCYS-CSIWGPTCDGLD 354
Query: 416 FLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ + +P G ++ + GAY ++ AST+N RP ++V S
Sbjct: 355 RIVERCNMPELQVGDWILFENMGAYTVAAASTFNGFQRPTIHYVMS 400
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2
Length = 423
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 160/400 (40%), Gaps = 53/400 (13%)
Query: 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149
E PF++ I R E +K+ L + YA+K N+++++L L LG G S
Sbjct: 34 EGDPFFVADLGDIVRKHETWKKCLPRVTPF--YAVKCNDDWRVLGTLAALGTGFDCASNT 91
Query: 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFV-NVDSEFDLENIVVASRIAGKKV 208
E++ G P K I+ K + + A GV V D +LE + K
Sbjct: 92 EIQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKA 147
Query: 209 NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268
++LRI+ D +A + KFG + E ++ L+ +A + + G H+GS
Sbjct: 148 KMVLRISTD------DSLARCRLSVKFGAKVEDCRFILE--QAKKLNIDVTGVSFHVGSG 199
Query: 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN------- 321
T F A D GF + L+IGGG P R+
Sbjct: 200 STDASTFAQAISDSRFVFDMGTELGFNMHILDIGGG-----------FPGTRDAPLKFEE 248
Query: 322 ---LIDTVRELVLSRNLNLII--EPGRSLIANTCCLVNHVT------GVKTNGTKNFIVI 370
+I+ E +L L I EPGR +A+ L +V GV+T+ +
Sbjct: 249 IAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESN 308
Query: 371 DGSMAELIRPSLYDAYQHI----ELVSPAPQ-----DAEISKFDVVGPVCESADFLGKER 421
S + +Y ++ I +V P PQ + ++ V GP C+ D + +
Sbjct: 309 AQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERY 368
Query: 422 ELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
LP G L+ D GAY + S++N P Y+V S
Sbjct: 369 YLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 408
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1
Length = 461
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 99/405 (24%), Positives = 167/405 (41%), Gaps = 41/405 (10%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I++ L
Sbjct: 25 DQKINEVSYSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSRTIVKTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
+G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 83 IGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + + L+ +A ++
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELDID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP 317
++G H+GS T + F A D GF + L+IGGG + + V
Sbjct: 191 VIGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFNMYLLDIGGG----FPGSEDVKL 246
Query: 318 KPRNLIDTV-----RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVK------------ 360
K + + + + +I EPGR +A+ L ++ K
Sbjct: 247 KFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKLVLKEQTGSDDE 306
Query: 361 ---TNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADF 416
T+ T + V DG LYD L+ P+ D + + GP C+ D
Sbjct: 307 EESTDRTFMYYVNDGVYGSF-NCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDR 365
Query: 417 LGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ + LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 366 IVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMS 410
>sp|P09057|DCOR_RAT Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1
Length = 461
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 167/403 (41%), Gaps = 37/403 (9%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ + + + +AL + YA+K N++ I+ L
Sbjct: 25 DQKINEVSSSDDKDAFYVADLGDVLKKHLRWLKALPRVTPF--YAVKCNDSRAIVSTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
+G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 83 IGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + + L+ +A +
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELNID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHTGAVL 316
++G H+GS T + F A D GF + L+IGGG G + T
Sbjct: 191 VIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGGFPGSE--DTKLKF 248
Query: 317 PKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKT------------- 361
+ ++I+ + + + +I EPGR +A+ L ++ KT
Sbjct: 249 EEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQTGSDDEDE 308
Query: 362 --NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADFLG 418
T + V DG LYD L+ P+ D + + GP C+ D +
Sbjct: 309 SNEQTLMYYVNDGVYGSF-NCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIV 367
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 368 ERCSLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS 410
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1
Length = 461
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/403 (24%), Positives = 166/403 (41%), Gaps = 37/403 (9%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I+ L
Sbjct: 25 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSRAIVSTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
G G S E++L G P + I+ K + + AA GV + DSE +L +
Sbjct: 83 TGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASSGVQMMTFDSEIELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + + L+ +A +
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELNID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHTGAVL 316
++G H+GS T + F A D GF + L+IGGG G + T
Sbjct: 191 VIGVSFHVGSGCTDPETFVQAVSDARCVFDMGTEVGFSMYLLDIGGGFPGSE--DTKLKF 248
Query: 317 PKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKT------------- 361
+ ++I+ + + + +I EPGR +A+ L ++ KT
Sbjct: 249 EEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDE 308
Query: 362 --NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADFLG 418
T + V DG LYD L+ P+ D + + GP C+ D +
Sbjct: 309 SNEQTFMYYVNDGVYGSF-NCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIV 367
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 368 ERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS 410
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase OS=Mus musculus GN=Odc1 PE=1 SV=2
Length = 461
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 99/403 (24%), Positives = 166/403 (41%), Gaps = 37/403 (9%)
Query: 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK 138
D ++ +V + +K FY+ I + + +AL + YA+K N++ I+ L
Sbjct: 25 DQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPF--YAVKCNDSRAIVSTLAA 82
Query: 139 LGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENI 197
+G G S E++L G + I+ K + + AA GV + DSE +L +
Sbjct: 83 IGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKV 142
Query: 198 VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257
A K ++LRI D D + A + KFG + + L+ +A +
Sbjct: 143 ARAH----PKAKLVLRIATD-DSK-----AVCRLSVKFGATLKTSRLLLE--RAKELNID 190
Query: 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHTGAVL 316
++G H+GS T + F A D GF + L+IGGG G + T
Sbjct: 191 VIGVSFHVGSGCTDPETFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSE--DTKLKF 248
Query: 317 PKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKT------------- 361
+ ++I+ + + + +I EPGR +A+ L ++ KT
Sbjct: 249 EEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDE 308
Query: 362 --NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ-DAEISKFDVVGPVCESADFLG 418
T + V DG LYD L+ P+ D + + GP C+ D +
Sbjct: 309 SNEQTFMYYVNDGVYGSF-NCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIV 367
Query: 419 KERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
+ LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 368 ERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,842,347
Number of Sequences: 539616
Number of extensions: 7796675
Number of successful extensions: 17297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 16866
Number of HSP's gapped (non-prelim): 196
length of query: 471
length of database: 191,569,459
effective HSP length: 121
effective length of query: 350
effective length of database: 126,275,923
effective search space: 44196573050
effective search space used: 44196573050
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)