Query 012098
Match_columns 471
No_of_seqs 231 out of 2092
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:36:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0019 LysA Diaminopimelate d 100.0 4.9E-80 1.1E-84 628.6 43.7 386 68-459 4-394 (394)
2 PLN02537 diaminopimelate decar 100.0 5.1E-77 1.1E-81 617.8 49.3 395 75-469 1-396 (410)
3 TIGR01048 lysA diaminopimelate 100.0 3.5E-74 7.7E-79 598.5 49.2 396 70-469 4-405 (417)
4 cd06830 PLPDE_III_ADC Type III 100.0 5.6E-72 1.2E-76 578.6 42.0 368 88-459 2-409 (409)
5 PRK11165 diaminopimelate decar 100.0 1.1E-70 2.4E-75 570.4 45.3 375 78-469 13-407 (420)
6 cd06836 PLPDE_III_ODC_DapDC_li 100.0 9.3E-71 2E-75 564.7 43.8 364 92-460 3-378 (379)
7 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 5.4E-70 1.2E-74 556.7 43.3 355 91-459 11-368 (368)
8 TIGR01047 nspC carboxynorsperm 100.0 1.2E-69 2.6E-74 555.8 42.1 360 91-470 2-371 (380)
9 TIGR03099 dCO2ase_PEP1 pyridox 100.0 1.1E-68 2.4E-73 553.9 46.5 381 72-459 5-398 (398)
10 cd06843 PLPDE_III_PvsE_like Ty 100.0 6.6E-69 1.4E-73 551.7 44.5 364 92-459 2-377 (377)
11 cd06828 PLPDE_III_DapDC Type I 100.0 1.1E-68 2.3E-73 549.7 44.7 366 91-459 2-373 (373)
12 cd06841 PLPDE_III_MccE_like Ty 100.0 2.1E-68 4.5E-73 548.4 44.5 363 85-463 1-379 (379)
13 KOG0622 Ornithine decarboxylas 100.0 5.2E-70 1.1E-74 532.9 30.5 363 90-468 54-433 (448)
14 cd06839 PLPDE_III_Btrk_like Ty 100.0 8.6E-68 1.9E-72 544.7 43.1 368 86-459 2-382 (382)
15 cd06831 PLPDE_III_ODC_like_AZI 100.0 2.8E-67 6.1E-72 539.6 39.4 351 91-462 12-384 (394)
16 cd06810 PLPDE_III_ODC_DapDC_li 100.0 1.7E-66 3.7E-71 532.4 44.0 361 92-459 1-368 (368)
17 cd06829 PLPDE_III_CANSDC Type 100.0 1.4E-66 2.9E-71 527.9 39.6 346 92-460 1-346 (346)
18 cd06842 PLPDE_III_Y4yA_like Ty 100.0 7.3E-66 1.6E-70 535.2 39.9 361 82-459 1-423 (423)
19 PRK08961 bifunctional aspartat 100.0 2.9E-65 6.2E-70 570.6 43.3 364 81-460 494-860 (861)
20 cd00622 PLPDE_III_ODC Type III 100.0 2.1E-63 4.6E-68 508.4 44.4 352 91-459 1-362 (362)
21 PRK05354 arginine decarboxylas 100.0 3.9E-59 8.4E-64 497.7 44.5 394 61-460 21-563 (634)
22 TIGR01273 speA arginine decarb 100.0 2.5E-56 5.4E-61 476.1 45.2 395 61-460 13-556 (624)
23 PLN02439 arginine decarboxylas 100.0 1.5E-50 3.3E-55 426.9 41.1 362 95-460 2-489 (559)
24 COG1166 SpeA Arginine decarbox 100.0 6.4E-45 1.4E-49 366.4 31.9 300 61-362 37-378 (652)
25 PF02784 Orn_Arg_deC_N: Pyrido 100.0 1.2E-44 2.7E-49 351.7 25.6 241 98-348 1-251 (251)
26 cd00430 PLPDE_III_AR Type III 100.0 1.6E-34 3.5E-39 295.9 28.9 314 94-437 3-332 (367)
27 TIGR00492 alr alanine racemase 100.0 1.4E-30 3.1E-35 266.6 31.0 306 95-437 5-336 (367)
28 cd06808 PLPDE_III Type III Pyr 100.0 1.6E-30 3.6E-35 245.5 25.9 195 102-310 1-196 (211)
29 cd06819 PLPDE_III_LS_D-TA Type 100.0 1.1E-29 2.3E-34 259.5 28.3 260 91-377 6-281 (358)
30 PRK00053 alr alanine racemase; 100.0 1.3E-28 2.8E-33 251.7 30.6 306 92-437 3-332 (363)
31 PRK13340 alanine racemase; Rev 100.0 1.8E-28 3.8E-33 253.9 30.2 304 93-437 41-370 (406)
32 cd06826 PLPDE_III_AR2 Type III 100.0 5.7E-28 1.2E-32 246.9 30.0 302 94-437 3-330 (365)
33 cd06818 PLPDE_III_cryptic_DSD 100.0 5.3E-27 1.1E-31 241.2 30.1 255 91-377 2-298 (382)
34 cd06812 PLPDE_III_DSD_D-TA_lik 100.0 3.8E-27 8.3E-32 242.0 29.0 245 91-376 5-277 (374)
35 cd06827 PLPDE_III_AR_proteobac 100.0 1.1E-26 2.4E-31 235.9 28.6 297 95-437 4-323 (354)
36 cd06813 PLPDE_III_DSD_D-TA_lik 99.9 1.1E-24 2.4E-29 224.2 30.6 271 82-374 2-299 (388)
37 cd06820 PLPDE_III_LS_D-TA_like 99.9 4E-25 8.6E-30 225.3 26.9 260 91-377 2-271 (353)
38 cd06825 PLPDE_III_VanT Type II 99.9 6.7E-25 1.4E-29 224.2 28.5 303 94-437 3-333 (368)
39 cd06821 PLPDE_III_D-TA Type II 99.9 6.9E-25 1.5E-29 224.2 28.0 333 87-469 5-352 (361)
40 COG0787 Alr Alanine racemase [ 99.9 2E-24 4.4E-29 215.9 30.2 302 92-437 3-328 (360)
41 cd06811 PLPDE_III_yhfX_like Ty 99.9 2.5E-24 5.4E-29 220.9 25.4 203 91-304 27-236 (382)
42 cd06815 PLPDE_III_AR_like_1 Ty 99.9 4.1E-24 8.9E-29 217.6 25.3 317 92-448 1-347 (353)
43 PRK03646 dadX alanine racemase 99.9 7.9E-23 1.7E-27 207.7 27.9 296 95-437 6-324 (355)
44 PRK11930 putative bifunctional 99.9 1.1E-22 2.4E-27 228.4 27.8 320 79-437 443-789 (822)
45 cd07376 PLPDE_III_DSD_D-TA_lik 99.9 3.9E-22 8.4E-27 202.7 28.3 251 101-378 1-265 (345)
46 cd00635 PLPDE_III_YBL036c_like 99.9 8.1E-21 1.8E-25 181.2 22.9 192 97-304 3-200 (222)
47 PF00278 Orn_DAP_Arg_deC: Pyri 99.9 3.1E-22 6.8E-27 171.3 10.5 108 351-459 1-116 (116)
48 cd06817 PLPDE_III_DSD Type III 99.9 1.3E-19 2.9E-24 186.0 29.9 257 91-377 5-296 (389)
49 cd06814 PLPDE_III_DSD_D-TA_lik 99.9 1.5E-19 3.2E-24 185.2 28.6 256 90-377 7-288 (379)
50 PF01168 Ala_racemase_N: Alani 99.8 2.5E-19 5.4E-24 170.3 21.1 188 97-304 1-192 (218)
51 cd06824 PLPDE_III_Yggs_like Py 99.7 2.9E-16 6.2E-21 150.0 22.8 170 118-305 27-202 (224)
52 TIGR00044 pyridoxal phosphate 99.7 8.9E-16 1.9E-20 147.0 24.7 170 117-303 28-204 (229)
53 COG3616 Predicted amino acid a 99.7 5.6E-15 1.2E-19 148.2 23.5 259 91-378 17-283 (368)
54 cd06822 PLPDE_III_YBL036c_euk 99.4 4E-11 8.7E-16 114.0 23.3 171 117-303 23-204 (227)
55 COG3457 Predicted amino acid r 99.4 3.4E-11 7.4E-16 115.9 21.0 198 92-304 3-203 (353)
56 COG0325 Predicted enzyme with 99.4 1.4E-10 3E-15 108.0 22.1 169 117-302 27-200 (228)
57 KOG3157 Proline synthetase co- 98.5 2.4E-06 5.1E-11 77.9 13.3 152 100-269 9-174 (244)
58 PF00842 Ala_racemase_C: Alani 96.7 0.007 1.5E-07 52.6 7.7 77 350-437 2-95 (129)
59 cd03174 DRE_TIM_metallolyase D 89.4 15 0.00032 35.5 15.1 152 92-265 11-199 (265)
60 cd07948 DRE_TIM_HCS Saccharomy 84.6 39 0.00084 33.0 14.8 146 95-265 17-193 (262)
61 PRK06801 hypothetical protein; 82.4 26 0.00056 34.8 12.6 125 173-343 7-137 (286)
62 cd07947 DRE_TIM_Re_CS Clostrid 81.5 57 0.0012 32.2 14.7 33 232-265 178-212 (279)
63 PRK08195 4-hyroxy-2-oxovalerat 81.2 44 0.00095 33.9 14.2 124 123-265 58-198 (337)
64 PF01261 AP_endonuc_2: Xylose 80.0 8.3 0.00018 35.3 8.0 102 240-347 27-138 (213)
65 PRK08091 ribulose-phosphate 3- 79.4 34 0.00073 32.7 11.9 103 172-305 80-188 (228)
66 TIGR03822 AblA_like_2 lysine-2 79.1 43 0.00093 33.7 13.3 66 174-251 218-292 (321)
67 cd07943 DRE_TIM_HOA 4-hydroxy- 77.9 49 0.0011 32.1 13.0 99 146-265 86-194 (263)
68 PRK07709 fructose-bisphosphate 76.9 49 0.0011 32.8 12.6 129 173-345 7-142 (285)
69 PRK02308 uvsE putative UV dama 75.4 44 0.00096 33.4 12.0 145 186-348 42-196 (303)
70 PRK11858 aksA trans-homoaconit 75.4 1E+02 0.0022 31.9 15.0 146 96-266 22-198 (378)
71 PRK13210 putative L-xylulose 5 74.4 25 0.00054 34.2 10.0 101 235-342 47-154 (284)
72 PF03851 UvdE: UV-endonuclease 74.0 53 0.0011 32.4 11.8 102 188-306 41-157 (275)
73 PRK09197 fructose-bisphosphate 73.3 35 0.00076 34.7 10.6 44 172-217 9-55 (350)
74 TIGR01501 MthylAspMutase methy 73.0 43 0.00094 29.2 9.9 56 238-308 40-95 (134)
75 cd02072 Glm_B12_BD B12 binding 73.0 40 0.00086 29.2 9.5 80 238-343 38-117 (128)
76 TIGR00542 hxl6Piso_put hexulos 72.8 32 0.00068 33.6 10.2 101 234-341 46-153 (279)
77 PRK13209 L-xylulose 5-phosphat 71.7 31 0.00067 33.6 9.9 102 234-342 51-159 (283)
78 PRK00208 thiG thiazole synthas 70.3 81 0.0018 30.5 11.8 101 80-185 79-199 (250)
79 PF01136 Peptidase_U32: Peptid 70.3 35 0.00077 32.2 9.7 82 130-212 5-91 (233)
80 PF01408 GFO_IDH_MocA: Oxidore 69.7 28 0.00062 28.8 8.0 80 126-210 32-118 (120)
81 PRK14057 epimerase; Provisiona 68.8 91 0.002 30.3 12.0 103 172-305 87-202 (254)
82 PRK12677 xylose isomerase; Pro 68.8 45 0.00098 34.5 10.7 97 242-342 69-180 (384)
83 cd04728 ThiG Thiazole synthase 68.4 97 0.0021 30.0 11.9 101 80-185 79-199 (248)
84 PF07745 Glyco_hydro_53: Glyco 68.4 1.4E+02 0.0031 30.3 18.0 64 238-304 56-134 (332)
85 cd07939 DRE_TIM_NifV Streptomy 68.0 1.2E+02 0.0026 29.3 16.6 147 97-266 17-192 (259)
86 PRK09856 fructoselysine 3-epim 66.7 40 0.00087 32.6 9.5 96 240-342 47-150 (275)
87 COG0646 MetH Methionine syntha 66.3 80 0.0017 31.4 11.0 131 180-338 153-291 (311)
88 PRK12857 fructose-1,6-bisphosp 66.1 1.1E+02 0.0025 30.2 12.4 126 173-345 7-139 (284)
89 TIGR02090 LEU1_arch isopropylm 65.6 1.7E+02 0.0036 30.1 15.8 126 119-265 40-193 (363)
90 PRK07315 fructose-bisphosphate 65.5 1.2E+02 0.0027 30.1 12.6 42 173-216 7-51 (293)
91 TIGR00629 uvde UV damage endon 64.4 1.2E+02 0.0026 30.5 12.2 105 186-306 46-166 (312)
92 PRK01060 endonuclease IV; Prov 64.3 44 0.00096 32.4 9.3 98 237-341 44-146 (281)
93 COG4981 Enoyl reductase domain 63.2 2.2E+02 0.0049 30.7 15.8 138 97-257 70-215 (717)
94 cd07938 DRE_TIM_HMGL 3-hydroxy 63.2 96 0.0021 30.4 11.3 28 237-266 175-203 (274)
95 PRK04165 acetyl-CoA decarbonyl 63.0 62 0.0013 34.3 10.4 107 98-206 103-226 (450)
96 cd04735 OYE_like_4_FMN Old yel 62.9 43 0.00092 34.2 9.1 45 206-267 214-258 (353)
97 COG1082 IolE Sugar phosphate i 62.6 1.5E+02 0.0032 28.4 12.8 105 235-341 40-146 (274)
98 PRK08185 hypothetical protein; 61.3 1.6E+02 0.0035 29.1 12.4 123 174-343 3-131 (283)
99 PF00834 Ribul_P_3_epim: Ribul 61.1 1.2E+02 0.0026 28.3 11.1 126 148-305 46-175 (201)
100 PRK00278 trpC indole-3-glycero 60.7 1.7E+02 0.0036 28.5 16.3 102 110-215 42-168 (260)
101 TIGR03234 OH-pyruv-isom hydrox 59.0 48 0.001 31.7 8.3 92 243-341 42-143 (254)
102 cd02003 TPP_IolD Thiamine pyro 58.6 77 0.0017 29.5 9.4 78 140-217 74-186 (205)
103 cd02006 TPP_Gcl Thiamine pyrop 58.4 51 0.0011 30.6 8.1 77 140-216 83-195 (202)
104 PRK09195 gatY tagatose-bisphos 58.3 2E+02 0.0043 28.5 13.3 127 173-345 7-139 (284)
105 KOG4127 Renal dipeptidase [Pos 58.2 52 0.0011 33.5 8.3 60 245-312 290-351 (419)
106 cd00946 FBP_aldolase_IIA Class 57.5 2.3E+02 0.0049 29.0 14.7 42 174-217 6-50 (345)
107 PRK06806 fructose-bisphosphate 56.9 1.9E+02 0.0042 28.5 12.2 43 172-216 6-51 (281)
108 TIGR01229 rocF_arginase argina 56.5 2.1E+02 0.0046 28.3 13.6 100 159-264 163-269 (300)
109 PRK09058 coproporphyrinogen II 55.9 2.7E+02 0.0059 29.4 14.2 52 146-205 161-212 (449)
110 TIGR02660 nifV_homocitr homoci 54.2 2.6E+02 0.0056 28.6 16.1 138 103-264 22-193 (365)
111 PRK05835 fructose-bisphosphate 54.2 2.4E+02 0.0052 28.3 13.1 128 173-345 6-139 (307)
112 COG0191 Fba Fructose/tagatose 54.1 2.2E+02 0.0047 28.2 11.7 132 173-350 7-145 (286)
113 TIGR02631 xylA_Arthro xylose i 53.3 1.2E+02 0.0026 31.4 10.5 96 242-341 70-180 (382)
114 cd07948 DRE_TIM_HCS Saccharomy 53.1 2.3E+02 0.0049 27.6 16.7 126 129-279 24-176 (262)
115 TIGR00381 cdhD CO dehydrogenas 53.0 42 0.00091 34.5 6.9 74 91-169 188-276 (389)
116 PLN02746 hydroxymethylglutaryl 52.5 2E+02 0.0044 29.3 11.8 115 130-265 103-250 (347)
117 cd02004 TPP_BZL_OCoD_HPCL Thia 51.7 75 0.0016 28.4 7.9 66 140-205 74-162 (172)
118 PRK13523 NADPH dehydrogenase N 51.5 66 0.0014 32.7 8.2 45 207-268 207-251 (337)
119 TIGR02090 LEU1_arch isopropylm 51.0 2.9E+02 0.0063 28.3 14.1 127 130-281 25-178 (363)
120 TIGR01302 IMP_dehydrog inosine 49.9 3.1E+02 0.0066 29.0 13.2 27 164-190 330-357 (450)
121 cd04733 OYE_like_2_FMN Old yel 49.6 45 0.00098 33.7 6.7 55 197-268 206-260 (338)
122 TIGR03217 4OH_2_O_val_ald 4-hy 49.0 3E+02 0.0065 27.8 17.0 101 147-266 89-198 (333)
123 COG2861 Uncharacterized protei 48.9 2.6E+02 0.0056 27.0 11.1 121 164-300 33-156 (250)
124 cd02803 OYE_like_FMN_family Ol 48.8 1.2E+02 0.0026 30.3 9.6 55 197-268 198-252 (327)
125 PF01116 F_bP_aldolase: Fructo 48.7 65 0.0014 31.9 7.4 127 173-345 6-138 (287)
126 COG1139 Uncharacterized conser 48.6 1.2E+02 0.0026 31.8 9.3 78 119-198 104-185 (459)
127 PRK04452 acetyl-CoA decarbonyl 48.3 64 0.0014 32.5 7.3 75 90-169 123-211 (319)
128 cd04734 OYE_like_3_FMN Old yel 48.2 1.6E+02 0.0035 29.8 10.5 50 203-268 204-253 (343)
129 PF02126 PTE: Phosphotriestera 48.0 65 0.0014 32.3 7.4 67 148-215 170-257 (308)
130 cd07938 DRE_TIM_HMGL 3-hydroxy 48.0 2.8E+02 0.006 27.2 14.8 70 194-280 116-185 (274)
131 cd00947 TBP_aldolase_IIB Tagat 47.5 2.9E+02 0.0063 27.2 13.7 126 174-345 3-134 (276)
132 cd07944 DRE_TIM_HOA_like 4-hyd 47.0 2.8E+02 0.0061 27.0 16.0 28 237-265 164-192 (266)
133 TIGR01520 FruBisAldo_II_A fruc 46.9 3.4E+02 0.0073 27.8 13.3 42 174-217 17-61 (357)
134 cd02015 TPP_AHAS Thiamine pyro 46.7 92 0.002 28.3 7.7 76 140-215 76-174 (186)
135 cd07944 DRE_TIM_HOA_like 4-hyd 46.7 2.4E+02 0.0051 27.5 11.0 112 148-282 58-176 (266)
136 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.6 2.1E+02 0.0045 28.1 10.6 98 146-264 92-200 (275)
137 PRK09196 fructose-1,6-bisphosp 46.2 3.4E+02 0.0074 27.7 12.4 135 172-344 6-146 (347)
138 PRK07998 gatY putative fructos 45.8 3.1E+02 0.0068 27.1 12.0 127 173-345 7-139 (283)
139 TIGR01521 FruBisAldo_II_B fruc 45.7 3.5E+02 0.0076 27.6 12.8 135 173-345 5-145 (347)
140 PRK14040 oxaloacetate decarbox 45.5 4.6E+02 0.0099 28.9 14.6 31 236-268 180-210 (593)
141 PRK07084 fructose-bisphosphate 45.2 2.8E+02 0.0061 28.0 11.3 44 172-217 12-58 (321)
142 TIGR01496 DHPS dihydropteroate 45.1 2.9E+02 0.0062 26.8 11.2 52 131-185 65-120 (257)
143 smart00518 AP2Ec AP endonuclea 44.8 2.9E+02 0.0063 26.5 11.5 94 237-341 42-140 (273)
144 cd02013 TPP_Xsc_like Thiamine 44.4 89 0.0019 28.8 7.3 76 140-215 79-179 (196)
145 PRK09875 putative hydrolase; P 44.3 2.2E+02 0.0047 28.3 10.4 65 147-212 165-240 (292)
146 PRK05692 hydroxymethylglutaryl 44.1 3.3E+02 0.0071 26.9 18.9 197 92-327 18-258 (287)
147 PRK07379 coproporphyrinogen II 43.5 3.9E+02 0.0086 27.6 16.8 134 91-267 75-210 (400)
148 PRK13774 formimidoylglutamase; 43.4 3.5E+02 0.0076 27.0 12.1 107 151-264 172-286 (311)
149 TIGR00238 KamA family protein. 43.4 3.5E+02 0.0075 27.3 11.9 66 174-251 241-315 (331)
150 PRK02261 methylaspartate mutas 43.2 2.2E+02 0.0048 24.7 9.5 78 242-342 43-120 (137)
151 PRK01130 N-acetylmannosamine-6 43.2 1.5E+02 0.0034 27.7 8.9 70 131-203 27-116 (221)
152 PF04273 DUF442: Putative phos 42.6 1.1E+02 0.0025 25.5 6.9 81 163-266 8-96 (110)
153 cd07941 DRE_TIM_LeuA3 Desulfob 41.9 3.4E+02 0.0074 26.5 12.1 27 237-265 177-204 (273)
154 TIGR01211 ELP3 histone acetylt 41.8 3.1E+02 0.0067 29.7 11.7 170 149-331 122-331 (522)
155 cd00019 AP2Ec AP endonuclease 41.8 3.3E+02 0.0071 26.3 12.6 97 238-342 43-144 (279)
156 smart00633 Glyco_10 Glycosyl h 41.7 1.6E+02 0.0035 28.2 9.0 89 193-303 104-194 (254)
157 PRK05904 coproporphyrinogen II 41.1 4.1E+02 0.0088 27.1 16.3 134 90-267 64-198 (353)
158 PRK00366 ispG 4-hydroxy-3-meth 40.8 1.3E+02 0.0029 30.6 8.2 41 172-212 90-137 (360)
159 cd07940 DRE_TIM_IPMS 2-isoprop 40.7 3.5E+02 0.0075 26.2 14.7 30 237-266 169-199 (268)
160 PRK08385 nicotinate-nucleotide 40.3 2.5E+02 0.0054 27.7 9.9 126 101-247 102-250 (278)
161 PRK09997 hydroxypyruvate isome 40.3 1.4E+02 0.0031 28.5 8.4 15 327-341 130-144 (258)
162 TIGR03581 EF_0839 conserved hy 39.9 51 0.0011 31.2 4.7 52 188-264 160-211 (236)
163 TIGR02635 RhaI_grampos L-rhamn 39.7 2E+02 0.0043 29.7 9.5 96 242-341 71-177 (378)
164 PRK03659 glutathione-regulated 39.5 2.2E+02 0.0049 31.3 10.6 83 130-216 413-500 (601)
165 cd07939 DRE_TIM_NifV Streptomy 39.2 3.6E+02 0.0078 26.0 15.1 125 130-279 23-174 (259)
166 PRK13352 thiamine biosynthesis 39.0 2.6E+02 0.0056 29.2 9.9 142 149-338 78-223 (431)
167 cd02932 OYE_YqiM_FMN Old yello 39.0 1E+02 0.0022 31.1 7.3 54 197-267 211-264 (336)
168 PRK14041 oxaloacetate decarbox 38.8 2.7E+02 0.0058 29.7 10.5 29 237-267 179-207 (467)
169 PLN02274 inosine-5'-monophosph 38.8 2.2E+02 0.0048 30.6 10.1 30 131-160 278-312 (505)
170 PF13679 Methyltransf_32: Meth 38.5 42 0.00092 29.1 3.9 30 278-307 5-38 (141)
171 PRK07535 methyltetrahydrofolat 38.5 3.8E+02 0.0083 26.1 12.2 83 130-217 58-162 (261)
172 cd02931 ER_like_FMN Enoate red 38.1 1E+02 0.0022 31.8 7.3 63 202-268 213-276 (382)
173 cd02014 TPP_POX Thiamine pyrop 38.1 1.6E+02 0.0035 26.5 7.9 74 140-215 77-171 (178)
174 PRK08610 fructose-bisphosphate 38.0 4.1E+02 0.009 26.3 13.9 128 173-345 7-142 (286)
175 PF06415 iPGM_N: BPG-independe 37.4 1.8E+02 0.0039 27.7 8.1 92 240-346 14-107 (223)
176 PRK08883 ribulose-phosphate 3- 37.3 3.6E+02 0.0079 25.5 11.2 44 172-217 70-116 (220)
177 TIGR03846 sulfopy_beta sulfopy 36.5 1.8E+02 0.0038 26.6 7.8 72 145-217 72-158 (181)
178 cd00019 AP2Ec AP endonuclease 36.5 3.5E+02 0.0075 26.1 10.5 97 240-347 85-183 (279)
179 cd03376 TPP_PFOR_porB_like Thi 36.5 3.2E+02 0.0069 26.1 9.9 97 140-251 88-221 (235)
180 TIGR01859 fruc_bis_ald_ fructo 36.4 4.3E+02 0.0093 26.0 13.3 42 173-216 5-49 (282)
181 TIGR01108 oadA oxaloacetate de 36.4 3.6E+02 0.0079 29.6 11.4 31 236-268 174-204 (582)
182 COG0635 HemN Coproporphyrinoge 36.3 76 0.0016 33.2 6.0 45 295-344 87-135 (416)
183 cd00423 Pterin_binding Pterin 36.0 4E+02 0.0088 25.6 10.7 53 130-185 65-122 (258)
184 PRK05567 inosine 5'-monophosph 34.9 4.7E+02 0.01 27.9 11.9 16 144-159 276-291 (486)
185 cd02010 TPP_ALS Thiamine pyrop 34.8 1.9E+02 0.0041 26.1 7.7 62 145-206 79-161 (177)
186 COG1902 NemA NADH:flavin oxido 34.7 2.5E+02 0.0054 28.9 9.3 40 202-253 211-250 (363)
187 cd01516 FBPase_glpX Bacterial 34.6 3.4E+02 0.0073 27.1 9.7 104 96-199 131-244 (309)
188 PTZ00372 endonuclease 4-like p 34.2 2.9E+02 0.0062 29.0 9.7 98 237-341 173-275 (413)
189 TIGR01858 tag_bisphos_ald clas 34.0 4.7E+02 0.01 25.8 13.6 127 173-345 5-137 (282)
190 PRK03562 glutathione-regulated 34.0 2.8E+02 0.0061 30.7 10.3 83 130-216 413-500 (621)
191 PRK08898 coproporphyrinogen II 33.6 5.5E+02 0.012 26.5 15.9 132 91-268 82-217 (394)
192 TIGR00167 cbbA ketose-bisphosp 33.6 4.9E+02 0.011 25.8 14.2 132 173-348 7-145 (288)
193 cd02071 MM_CoA_mut_B12_BD meth 33.5 2.9E+02 0.0063 23.2 11.1 85 113-198 23-117 (122)
194 PRK12738 kbaY tagatose-bisphos 33.4 4.9E+02 0.011 25.8 13.7 127 173-345 7-139 (286)
195 cd02001 TPP_ComE_PpyrDC Thiami 33.3 1.4E+02 0.003 26.5 6.4 75 140-214 67-154 (157)
196 PF01729 QRPTase_C: Quinolinat 33.0 3.7E+02 0.0081 24.3 13.6 36 105-140 4-40 (169)
197 PRK08745 ribulose-phosphate 3- 32.8 4.4E+02 0.0095 25.0 11.4 44 172-217 74-120 (223)
198 PRK09057 coproporphyrinogen II 32.6 5.6E+02 0.012 26.2 15.7 90 91-205 64-153 (380)
199 PRK02048 4-hydroxy-3-methylbut 32.6 5.5E+02 0.012 28.3 11.6 24 278-301 181-204 (611)
200 PRK06552 keto-hydroxyglutarate 32.6 4.3E+02 0.0093 24.9 12.8 66 129-198 51-126 (213)
201 COG4981 Enoyl reductase domain 32.2 5.2E+02 0.011 28.1 11.0 107 174-308 112-225 (717)
202 PRK11613 folP dihydropteroate 32.1 5.1E+02 0.011 25.6 12.7 50 132-185 81-135 (282)
203 TIGR03217 4OH_2_O_val_ald 4-hy 32.1 5.5E+02 0.012 26.0 16.6 86 172-280 89-179 (333)
204 PRK08611 pyruvate oxidase; Pro 32.0 3E+02 0.0064 30.1 10.0 77 140-216 434-531 (576)
205 PRK09989 hypothetical protein; 32.0 2.5E+02 0.0054 26.8 8.6 20 322-341 122-144 (258)
206 cd04729 NanE N-acetylmannosami 31.8 2.9E+02 0.0062 25.8 8.7 78 131-212 31-128 (219)
207 PRK12330 oxaloacetate decarbox 31.8 4.8E+02 0.01 28.1 11.1 32 237-268 181-212 (499)
208 PRK09722 allulose-6-phosphate 31.6 4.7E+02 0.01 25.0 14.6 44 172-217 71-118 (229)
209 PRK10605 N-ethylmaleimide redu 31.6 4.7E+02 0.01 26.7 10.8 43 203-258 222-265 (362)
210 PF04131 NanE: Putative N-acet 31.6 1.7E+02 0.0037 27.2 6.7 70 129-200 81-165 (192)
211 PF00682 HMGL-like: HMGL-like 31.4 3.6E+02 0.0079 25.3 9.5 94 151-264 73-189 (237)
212 PLN02746 hydroxymethylglutaryl 31.3 5.8E+02 0.013 26.0 21.0 131 130-280 71-233 (347)
213 cd07943 DRE_TIM_HOA 4-hydroxy- 31.2 4.9E+02 0.011 25.1 15.5 84 173-279 88-176 (263)
214 PRK12415 fructose 1,6-bisphosp 31.2 3.8E+02 0.0082 27.0 9.5 104 96-199 132-245 (322)
215 cd07940 DRE_TIM_IPMS 2-isoprop 31.2 4.9E+02 0.011 25.1 14.7 38 237-278 140-177 (268)
216 PRK09479 glpX fructose 1,6-bis 31.1 4E+02 0.0087 26.7 9.6 104 96-199 134-247 (319)
217 TIGR03254 oxalate_oxc oxalyl-C 30.8 1.9E+02 0.0042 31.3 8.3 78 140-217 442-540 (554)
218 PRK13802 bifunctional indole-3 30.7 6.4E+02 0.014 28.4 12.3 31 129-159 149-181 (695)
219 TIGR00612 ispG_gcpE 1-hydroxy- 30.6 2.4E+02 0.0052 28.6 8.0 26 187-212 103-128 (346)
220 PRK08195 4-hyroxy-2-oxovalerat 29.7 6E+02 0.013 25.7 16.3 110 147-279 63-179 (337)
221 cd00453 FTBP_aldolase_II Fruct 29.7 6.2E+02 0.013 25.8 12.4 41 174-216 3-46 (340)
222 TIGR01244 conserved hypothetic 29.5 3.7E+02 0.0079 23.1 11.1 28 163-191 8-35 (135)
223 PRK10537 voltage-gated potassi 29.4 2E+02 0.0044 29.8 7.7 82 130-215 253-337 (393)
224 PLN02858 fructose-bisphosphate 29.3 5.4E+02 0.012 31.6 12.2 121 176-345 1106-1234(1378)
225 PRK09282 pyruvate carboxylase 29.3 5.9E+02 0.013 28.0 11.6 31 236-268 179-209 (592)
226 cd00452 KDPG_aldolase KDPG and 29.2 4.4E+02 0.0095 24.0 9.3 138 120-303 9-151 (190)
227 PF02254 TrkA_N: TrkA-N domain 28.9 3.1E+02 0.0068 22.2 10.0 82 130-215 11-97 (116)
228 COG0635 HemN Coproporphyrinoge 27.9 3.2E+02 0.0069 28.6 9.0 56 91-147 96-157 (416)
229 COG5016 Pyruvate/oxaloacetate 27.8 5.1E+02 0.011 27.1 9.9 32 236-269 180-212 (472)
230 cd02933 OYE_like_FMN Old yello 27.5 4.8E+02 0.01 26.4 10.0 42 204-258 216-257 (338)
231 PRK12581 oxaloacetate decarbox 27.1 2E+02 0.0044 30.6 7.3 30 237-268 189-218 (468)
232 TIGR01504 glyox_carbo_lig glyo 27.1 2.2E+02 0.0048 31.1 8.0 64 140-203 444-539 (588)
233 PRK13399 fructose-1,6-bisphosp 27.0 6.9E+02 0.015 25.5 14.2 136 172-345 6-147 (347)
234 PRK12331 oxaloacetate decarbox 27.0 7.8E+02 0.017 26.1 11.9 96 148-264 99-205 (448)
235 PRK08208 coproporphyrinogen II 26.8 7.5E+02 0.016 25.8 15.9 96 147-267 140-236 (430)
236 COG0821 gcpE 1-hydroxy-2-methy 26.5 3E+02 0.0065 27.9 7.8 39 174-212 86-130 (361)
237 PRK07710 acetolactate synthase 26.4 2.2E+02 0.0047 31.1 7.7 77 140-216 450-549 (571)
238 PF00491 Arginase: Arginase fa 26.4 3.2E+02 0.007 26.5 8.3 107 152-264 136-251 (277)
239 PRK10128 2-keto-3-deoxy-L-rham 26.4 4.5E+02 0.0098 25.7 9.2 74 126-202 25-113 (267)
240 PRK06552 keto-hydroxyglutarate 26.2 5.5E+02 0.012 24.1 18.9 89 91-185 38-131 (213)
241 PRK14339 (dimethylallyl)adenos 25.8 5.7E+02 0.012 26.7 10.5 46 232-279 258-303 (420)
242 cd02005 TPP_PDC_IPDC Thiamine 25.5 3.4E+02 0.0074 24.6 7.8 64 140-203 76-161 (183)
243 COG0028 IlvB Thiamine pyrophos 25.4 2.2E+02 0.0048 31.0 7.5 78 140-217 434-533 (550)
244 PRK07979 acetolactate synthase 25.3 2.7E+02 0.0058 30.4 8.2 77 140-216 447-549 (574)
245 cd02009 TPP_SHCHC_synthase Thi 24.8 2.2E+02 0.0047 25.6 6.3 62 145-206 81-166 (175)
246 PF12224 Amidoligase_2: Putati 24.7 2.4E+02 0.0053 26.7 7.0 53 239-291 91-147 (252)
247 PF04551 GcpE: GcpE protein; 24.6 7.7E+02 0.017 25.3 12.3 59 238-301 116-181 (359)
248 KOG3111 D-ribulose-5-phosphate 24.3 6E+02 0.013 23.8 10.4 100 173-306 77-179 (224)
249 TIGR03821 AblA_like_1 lysine-2 24.3 3.5E+02 0.0075 27.2 8.2 51 189-251 248-298 (321)
250 PRK09107 acetolactate synthase 24.2 3E+02 0.0064 30.2 8.3 76 140-215 456-554 (595)
251 cd03174 DRE_TIM_metallolyase D 24.2 6.2E+02 0.013 24.0 15.6 126 130-279 22-181 (265)
252 COG0673 MviM Predicted dehydro 24.0 4.2E+02 0.0091 26.1 8.9 87 119-211 31-124 (342)
253 COG2185 Sbm Methylmalonyl-CoA 24.0 4.6E+02 0.0099 23.2 7.7 76 108-184 31-116 (143)
254 PLN02470 acetolactate synthase 23.9 2.8E+02 0.0061 30.3 8.1 77 140-216 452-558 (585)
255 COG1751 Uncharacterized conser 23.8 5.4E+02 0.012 23.1 13.3 104 241-359 40-149 (186)
256 TIGR02418 acolac_catab acetola 23.7 3.4E+02 0.0073 29.3 8.6 76 140-215 434-530 (539)
257 TIGR03471 HpnJ hopanoid biosyn 23.5 6E+02 0.013 26.8 10.3 96 103-207 260-368 (472)
258 PRK08255 salicylyl-CoA 5-hydro 23.4 2.4E+02 0.0051 32.1 7.5 48 204-268 615-662 (765)
259 TIGR01227 hutG formimidoylglut 23.3 7.4E+02 0.016 24.5 14.6 109 150-264 165-282 (307)
260 PRK05848 nicotinate-nucleotide 23.3 1.4E+02 0.0031 29.3 5.0 98 100-199 101-221 (273)
261 cd02002 TPP_BFDC Thiamine pyro 23.2 3.3E+02 0.0072 24.2 7.2 27 178-204 141-168 (178)
262 PRK09259 putative oxalyl-CoA d 23.2 3.9E+02 0.0086 29.0 9.0 77 140-216 449-547 (569)
263 PRK14456 ribosomal RNA large s 23.1 8.3E+02 0.018 25.1 14.1 37 320-356 328-366 (368)
264 TIGR00284 dihydropteroate synt 23.0 9.7E+02 0.021 25.8 14.2 85 130-220 197-291 (499)
265 PRK12737 gatY tagatose-bisphos 23.0 7.4E+02 0.016 24.5 13.9 127 173-345 7-139 (284)
266 PRK06048 acetolactate synthase 23.0 3.2E+02 0.007 29.6 8.3 77 140-216 440-539 (561)
267 PRK07418 acetolactate synthase 22.8 2.8E+02 0.006 30.6 7.8 76 140-215 460-559 (616)
268 PRK08207 coproporphyrinogen II 22.6 1.9E+02 0.0041 31.0 6.2 66 273-343 196-263 (488)
269 PRK09389 (R)-citramalate synth 22.5 9.7E+02 0.021 25.6 16.4 145 96-265 20-195 (488)
270 TIGR01696 deoB phosphopentomut 22.5 3.6E+02 0.0078 27.9 7.9 128 162-303 143-279 (381)
271 PRK08266 hypothetical protein; 22.4 3.8E+02 0.0083 28.8 8.7 77 140-216 428-526 (542)
272 COG1456 CdhE CO dehydrogenase/ 22.3 8.7E+02 0.019 25.0 13.6 118 90-207 95-232 (467)
273 cd04747 OYE_like_5_FMN Old yel 22.2 3.1E+02 0.0067 28.1 7.4 48 203-263 207-254 (361)
274 PRK15452 putative protease; Pr 22.1 9.5E+02 0.021 25.4 12.9 110 98-212 44-165 (443)
275 TIGR00330 glpX fructose-1,6-bi 22.0 6.9E+02 0.015 25.1 9.3 84 96-179 131-217 (321)
276 TIGR01182 eda Entner-Doudoroff 21.9 6.6E+02 0.014 23.5 16.5 111 130-263 47-177 (204)
277 COG0826 Collagenase and relate 21.8 8.6E+02 0.019 24.8 13.0 98 97-199 46-157 (347)
278 COG0042 tRNA-dihydrouridine sy 21.8 5.3E+02 0.011 26.0 8.9 102 79-182 101-219 (323)
279 cd03372 TPP_ComE Thiamine pyro 21.7 5.6E+02 0.012 23.1 8.4 75 140-216 67-156 (179)
280 cd00331 IGPS Indole-3-glycerol 21.7 6.4E+02 0.014 23.3 10.7 74 131-206 35-122 (217)
281 PRK05718 keto-hydroxyglutarate 21.6 6.8E+02 0.015 23.5 9.8 76 103-187 54-132 (212)
282 PRK08629 coproporphyrinogen II 21.4 2.2E+02 0.0047 30.0 6.3 50 288-343 94-143 (433)
283 PF14871 GHL6: Hypothetical gl 21.4 1.6E+02 0.0035 25.5 4.4 55 284-338 4-61 (132)
284 cd00568 TPP_enzymes Thiamine p 21.1 5.3E+02 0.012 22.3 8.1 58 147-204 79-158 (168)
285 PRK09124 pyruvate dehydrogenas 21.1 3.4E+02 0.0073 29.6 8.0 77 140-216 434-531 (574)
286 PRK06457 pyruvate dehydrogenas 21.0 3.1E+02 0.0067 29.7 7.6 77 140-216 423-520 (549)
287 TIGR03822 AblA_like_2 lysine-2 21.0 8.4E+02 0.018 24.4 11.9 88 240-340 214-305 (321)
288 cd08070 MPN_like Mpr1p, Pad1p 21.0 4.5E+02 0.0097 22.2 7.2 34 233-268 49-83 (128)
289 PRK11579 putative oxidoreducta 20.8 2.3E+02 0.0051 28.4 6.3 62 145-210 53-120 (346)
290 cd06564 GH20_DspB_LnbB-like Gl 20.8 5.9E+02 0.013 25.5 9.1 15 97-111 14-28 (326)
291 TIGR02631 xylA_Arthro xylose i 20.8 8E+02 0.017 25.3 10.2 61 193-268 159-219 (382)
292 PRK05286 dihydroorotate dehydr 20.8 8.8E+02 0.019 24.5 11.0 53 190-265 190-246 (344)
293 TIGR02720 pyruv_oxi_spxB pyruv 20.8 2.7E+02 0.0059 30.4 7.1 78 140-217 434-534 (575)
294 PRK13772 formimidoylglutamase; 20.8 8.4E+02 0.018 24.3 11.7 96 163-264 187-290 (314)
295 PRK10669 putative cation:proto 20.7 7.7E+02 0.017 26.7 10.6 82 130-215 430-516 (558)
296 PF03102 NeuB: NeuB family; I 20.7 4.2E+02 0.0092 25.5 7.6 76 130-206 59-140 (241)
297 cd06568 GH20_SpHex_like A subg 20.6 8.7E+02 0.019 24.4 10.5 15 97-111 15-29 (329)
298 PTZ00314 inosine-5'-monophosph 20.4 1.1E+03 0.023 25.3 13.1 28 164-191 347-375 (495)
299 PRK05858 hypothetical protein; 20.4 5.4E+02 0.012 27.7 9.3 76 140-215 433-530 (542)
300 PRK10558 alpha-dehydro-beta-de 20.3 7.5E+02 0.016 23.9 9.4 75 126-203 26-115 (256)
301 TIGR00223 panD L-aspartate-alp 20.2 1E+02 0.0022 26.5 2.8 57 399-465 53-114 (126)
302 CHL00099 ilvB acetohydroxyacid 20.2 3.8E+02 0.0081 29.3 8.1 76 140-215 456-555 (585)
303 cd02930 DCR_FMN 2,4-dienoyl-Co 20.2 3.1E+02 0.0068 27.8 7.0 48 197-259 194-241 (353)
304 PRK06456 acetolactate synthase 20.2 3.5E+02 0.0075 29.4 7.8 76 140-215 447-545 (572)
305 PRK08979 acetolactate synthase 20.1 3.8E+02 0.0082 29.2 8.1 76 140-215 447-546 (572)
306 PRK07789 acetolactate synthase 20.1 3.7E+02 0.008 29.6 8.1 76 140-215 473-576 (612)
No 1
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-80 Score=628.64 Aligned_cols=386 Identities=41% Similarity=0.657 Sum_probs=356.1
Q ss_pred eeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcC
Q 012098 68 SKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVS 147 (471)
Q Consensus 68 ~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS 147 (471)
....+|.++++++++.++++++ +||+||||++.|++|+++|+++++..+++++||+|||+++.|+++|.+.|.|+||+|
T Consensus 4 ~~~~~~~l~~~~~~~~~l~~~~-gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S 82 (394)
T COG0019 4 FRNKDGELTIEGVDLPALAEEF-GTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVAS 82 (394)
T ss_pred ccccccceeecCccHHHHhhcc-CCCEEEEcHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecC
Confidence 3456889999999999999997 999999999999999999999999877899999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccc
Q 012098 148 GNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYV 226 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~ 226 (471)
.+|+++|+++|++|++|+|+|++|+.++|+.|++.|+. |++||++||++|.+.++.. +.+|+|||||+.+...|+.+
T Consensus 83 ~gEl~~al~aG~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~--~~~v~lRInP~~~~~th~~~ 160 (394)
T COG0019 83 LGELELALAAGFPPERIVFSGPAKSEEEIAFALELGIKLINVDSEEELERLSAIAPGL--VARVSLRINPGVSAGTHEYI 160 (394)
T ss_pred HHHHHHHHHcCCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCCHHHHHHHHHhcccc--CceEEEEECCCCCCccCccc
Confidence 99999999999999999999999999999999999997 9999999999999987654 68999999999999999999
Q ss_pred ccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCCEEEecCCC
Q 012098 227 ATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGL 305 (471)
Q Consensus 227 ~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~~l~~ldiGGGl 305 (471)
+||...+|||++.+++.++++.+++.+ ++++.|||||+|||+.|.+.|.++++.+.+++.++. +.|+++++||+|||+
T Consensus 161 ~tg~~~sKFG~~~~~a~~~~~~~~~~~-~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~ 239 (394)
T COG0019 161 ATGGKSSKFGISPEEALDVLERAAKLL-GLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGL 239 (394)
T ss_pred cCCccccccCCCHHHHHHHHHHHHhcC-CCceEEEEEeecCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCCc
Confidence 999999999999999888888877776 899999999999999999999999999999999995 579999999999999
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhh
Q 012098 306 GIDYYHTGAVLPKPRNLIDTVRELVLS--RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383 (471)
Q Consensus 306 ~i~y~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~ 383 (471)
|++|.. +...+++.++++.+++.+.+ .+++|++||||+++++||+|+|+|..+|+.++++|+++|+||+++++|.+|
T Consensus 240 gi~Y~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly 318 (394)
T COG0019 240 GITYED-EYDPPDLAAYAKALKEAFGEYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALY 318 (394)
T ss_pred CcCCCC-CCCCcCHHHHHHHHHHHHhhccCCCeEEEccchhhhhcceeEEEEEEEEEEecCceEEEEechhccCcCHHHc
Confidence 999986 34456788899999998876 578999999999999999999999999998768999999999999999999
Q ss_pred hcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCC-CCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTP-DRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~-~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
+++|++.+ .....+.+...++|+||+|+++|+|.+++.||+. ++||+|+|.++|||+++|+++||++|+|++|++
T Consensus 319 ~a~~~~~~-~~~~~~~~~~~~~v~G~~CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 319 GAYHHIRL-NRTDEDAEREEYDVVGPTCESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred CCcccccc-ccccCCCCeEEEEEECCCcCCCCeeeeeeeCCCCCCCCCEEEEcccchhhhhhhccccCCCCCceeeC
Confidence 99988765 2222234467889999999999999999999985 599999999999999999999999999999975
No 2
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=5.1e-77 Score=617.85 Aligned_cols=395 Identities=90% Similarity=1.395 Sum_probs=363.5
Q ss_pred EEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHH
Q 012098 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLA 154 (471)
Q Consensus 75 l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a 154 (471)
|+++++++.+|++++.+||+||||++.|++|+++|++++++.+.+++|++|||+++.|++++.+.|++++|+|..|++++
T Consensus 1 ~~~~~~~~~~l~~~~~~tP~~v~d~~~l~~N~~~~~~~~~~~~~~i~yavKaN~~~~il~~l~~~G~~~~~~S~~E~~~a 80 (410)
T PLN02537 1 LYCEGLRVQDIMESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILEHLRELGCGAVLVSGNELRLA 80 (410)
T ss_pred CeECCccHHHHHHhcCCCCeEEEeHHHHHHHHHHHHHHhccCCceEEEEehhcCCHHHHHHHHHcCCCEEEeCHHHHHHH
Confidence 36789999999999757999999999999999999999987667799999999999999999999999999999999999
Q ss_pred HHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC
Q 012098 155 LRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234 (471)
Q Consensus 155 ~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK 234 (471)
+++|+++++|+|+||.|+.++++.|+++|+.+++||++|+++|.+.+++.+++++|+||||++.+...++.++||...+|
T Consensus 81 l~~G~~~~~ii~~g~~k~~~~l~~a~~~gv~i~ids~~el~~l~~~a~~~~~~~~v~lRvnp~~~~~~~~~i~tG~~~sR 160 (410)
T PLN02537 81 LRAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 160 (410)
T ss_pred HHcCCCcceEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCccccCCCCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999888888888999977799
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
||++.+++.++++.+++.+.++++.|+|||+|||+.+.+.|.++++.+.++++.+++.|+++++||+|||||++|...+.
T Consensus 161 fGi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~ 240 (410)
T PLN02537 161 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYYHAGA 240 (410)
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcEEEEEeccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCccEEEcCCCccccCCCCCC
Confidence 99999999999998887653699999999999999999999999999999999999899999999999999999975444
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCC
Q 012098 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP 394 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~ 394 (471)
..|+++++++.+++.+.+.++++++|||||++++||++|++|+++|+.++++|+++|||++++++|++|+.++++.++.+
T Consensus 241 ~~~~~~~~~~~i~~~~~~~~~~li~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~dgg~~~~~~p~~~~~~~~~~~~~~ 320 (410)
T PLN02537 241 VLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSP 320 (410)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEccChhhhccceEEEEEEEEEeecCCcEEEEEeCccccccchHhhccccceeEccC
Confidence 45688999999999998888999999999999999999999999999878899999999999999999998888766544
Q ss_pred CCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE-CCeEEEEec
Q 012098 395 APQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR-SLISIIILP 469 (471)
Q Consensus 395 ~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~-~~~~~~~~~ 469 (471)
...+.+..+++|+||+|++.|++.+++.||++++||+|+|.++|||+++|+++||++++|++|+++ +++.+.||+
T Consensus 321 ~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~~~~~GAY~~s~~s~fn~~~~p~~v~~~~~~~~~~ir~ 396 (410)
T PLN02537 321 PPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRH 396 (410)
T ss_pred CCCCCCceEEEEecCccCCCCEEEEcccCCCCCCCCEEEEeCCCcccHhhhHHhcCCCCCeEEEEECCCEEEEEEe
Confidence 322345678899999999999999999999999999999999999999999999999999999997 567888885
No 3
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=3.5e-74 Score=598.51 Aligned_cols=396 Identities=42% Similarity=0.686 Sum_probs=361.5
Q ss_pred ccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHH
Q 012098 70 KADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149 (471)
Q Consensus 70 ~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~ 149 (471)
+.+|.+.+.+.++.+|++++ +||+||||++.|++|++.|+++++..+++++|++|||+++.|++++.+.|+||+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~-~tP~~v~d~~~l~~n~~~l~~~~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~dvaS~~ 82 (417)
T TIGR01048 4 NKDGELFIEGVDLLELAEEF-GTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNLALLRLLAELGSGFDVVSGG 82 (417)
T ss_pred CCCCceEECCeeHHHHHHhh-CCCEEEEeHHHHHHHHHHHHHhhCCCCceEEEEehhCCCHHHHHHHHHcCCcEEEeCHH
Confidence 45788999999999999997 99999999999999999999999875568999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccccc
Q 012098 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVAT 228 (471)
Q Consensus 150 El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~t 228 (471)
|+++++++|+++++|+|+||+|+.++++.|+++|+. +++||++|+++|.+.+++.+++++|+||||++.+...+.+++|
T Consensus 83 E~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gi~~i~iDs~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~ 162 (417)
T TIGR01048 83 ELYRALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVDSESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYIST 162 (417)
T ss_pred HHHHHHHcCCCcceEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeec
Confidence 999999999999999999999999999999999996 9999999999999999888888999999999888777888999
Q ss_pred CCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC
Q 012098 229 GNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308 (471)
Q Consensus 229 g~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~ 308 (471)
|+..+|||++++++.++++.+++.+ ++++.|||+|+||+..+.+.+.++++.+.++++++++.|+++++||+||||+++
T Consensus 163 g~~~srfGi~~~~~~~~~~~~~~~~-~l~l~Glh~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~l~~idiGGG~~~~ 241 (417)
T TIGR01048 163 GLEDSKFGIDVEEALEAYLYALQLP-HLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIP 241 (417)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHHHhcCCCccEEEeCCccccc
Confidence 9888999999999999999888877 899999999999999899999999999999999999889999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhh
Q 012098 309 YYHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLY 383 (471)
Q Consensus 309 y~~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~ 383 (471)
|...+. .++++++++.+++.+.+ .+++|++|||||++++||+++++|+++|+..+++|+++|+|++++++|.+|
T Consensus 242 y~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~l~~EPGR~lva~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~ 320 (417)
T TIGR01048 242 YTPEEE-PPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRNFVIVDAGMNDLIRPALY 320 (417)
T ss_pred cCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCcEEEEccCceeeccceEEEEEEEEEEecCCCEEEEEeCCcccchhhhhc
Confidence 965432 34678888888777654 367999999999999999999999999998888999999999999999999
Q ss_pred hcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCe
Q 012098 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLI 463 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~ 463 (471)
+.++++.++... ...+..+++|+||+|+++|+|.+++.||++++||+|+|.++|||+++++++||++|+|++|++++++
T Consensus 321 ~~~~~~~~~~~~-~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~~~~~ 399 (417)
T TIGR01048 321 GAYHHIIVANRT-NDAPTEVADVVGPLCESGDVLARDRELPEVEPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVDGGQ 399 (417)
T ss_pred cccceEEEccCC-CCCCceEEEEEeCCcCCCCEEeeccCCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCeEEEEECCE
Confidence 888776655321 1234578999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEec
Q 012098 464 SIIILP 469 (471)
Q Consensus 464 ~~~~~~ 469 (471)
.+.||.
T Consensus 400 ~~~ir~ 405 (417)
T TIGR01048 400 ARLIRR 405 (417)
T ss_pred EEEEEe
Confidence 998885
No 4
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=5.6e-72 Score=578.62 Aligned_cols=368 Identities=22% Similarity=0.233 Sum_probs=322.2
Q ss_pred hcCCCcEEEEeHHHHHHHHHHHHHHhcCC--------CceEEEecccCCcHHHHHHHHHcC----CceEEcCHHHHHHHH
Q 012098 88 TVEKRPFYLYSKPQITRNVEAYKQALEGL--------NSIIGYAIKANNNYKILEHLRKLG----CGAVLVSGNELRLAL 155 (471)
Q Consensus 88 ~~~~tP~~v~d~~~l~~n~~~~~~a~~~~--------~~~i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~ 155 (471)
++ +||+||||++.|++|+++++++|++. +++++||+|||+++.|++++.+.| +|+||+|.+|++.|+
T Consensus 2 ~y-gtPlyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al 80 (409)
T cd06830 2 GY-GLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAAL 80 (409)
T ss_pred CC-CCCEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHH
Confidence 44 89999999999999999999999853 468999999999999999999999 999999999999999
Q ss_pred HCCCCCCcEEEeCCCCcHHHHHHHHhC---C--CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCC
Q 012098 156 RAGFDPTKCIFNGNGKLLEDLVLAAQE---G--VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230 (471)
Q Consensus 156 ~~G~~~~~Ii~~g~~k~~~~l~~a~~~---g--v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~ 230 (471)
++|+++++|++.++.|+.++|+.|++. | +.+++||++||++|.+.+++.+++++|+||||++.... +.++.+++
T Consensus 81 ~~G~~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~-~~~~~~~~ 159 (409)
T cd06830 81 ALLKTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGS-GKWQESGG 159 (409)
T ss_pred hcCCCCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCC-cceeccCC
Confidence 999988888887778999999999865 4 46899999999999999988888899999999986554 66788899
Q ss_pred CCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCC
Q 012098 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310 (471)
Q Consensus 231 ~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~ 310 (471)
..+|||++.+++.++++.+++.+.+++++|+|||+|||+.+.+.|.++++.+.++++.+++.|+++++||||||||++|.
T Consensus 160 ~~sKFGi~~~~~~~~~~~~~~~~~~l~l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiGGGf~v~y~ 239 (409)
T cd06830 160 DRSKFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYD 239 (409)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCcCCeEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcCCCcccCCC
Confidence 99999999999999999998864368999999999999999999999999999999999888999999999999999997
Q ss_pred CCC-----CCCCCHHHHHHHHHHHHh----cC---CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCc
Q 012098 311 HTG-----AVLPKPRNLIDTVRELVL----SR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI 378 (471)
Q Consensus 311 ~~~-----~~~~~~~~~~~~i~~~~~----~~---~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~ 378 (471)
..+ ...++++++++.|.+.++ +. .++|++|||||++++||++||+|+++|+.. +.|+++||+|+++.
T Consensus 240 ~~~~~~~~~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~-~~~~~~dg~~~~~~ 318 (409)
T cd06830 240 GSRSSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA-DWYFCNFSLFQSLP 318 (409)
T ss_pred CCcCcccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEecCHHhhhhceEEEEEeEEEEecC-CEEEEecccccCCc
Confidence 542 123467777777666543 23 359999999999999999999999999754 46788999999999
Q ss_pred ChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC---------CCC--CCCCCEEEEcCCCccccccCCC
Q 012098 379 RPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE---------LPT--PDRGAGLVVHDAGAYCMSMAST 447 (471)
Q Consensus 379 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~---------lP~--~~~GD~l~~~~~GAY~~~~~~~ 447 (471)
++.+|+.++++.++.+.. ..+..+++|+||+|+|.|++.+++. ||+ +++||+|+|.++|||+.+|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~Gp~C~s~D~~~~~~~l~~~~~~~~lp~~~~~~GD~l~~~~~GAY~~s~ss~ 397 (409)
T cd06830 319 DSWAIDQLFPIMPLHRLN-EKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDL 397 (409)
T ss_pred chHHhCCCceEEECCCCC-CCCceeEEEeccCcCCCCEEeeecccccccccccCCCCCCCCCCEEEEEeccHhhHHHHhc
Confidence 999999888876665322 2245689999999999999998877 443 4799999999999999999999
Q ss_pred CCCCCCCcEEEE
Q 012098 448 YNLKMRPPEYWV 459 (471)
Q Consensus 448 fn~~~~p~~v~v 459 (471)
||++++|++|++
T Consensus 398 fn~~~~p~~v~v 409 (409)
T cd06830 398 HNLFGDTNAVHV 409 (409)
T ss_pred ccCCCCCCEEeC
Confidence 999999999975
No 5
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=1.1e-70 Score=570.39 Aligned_cols=375 Identities=30% Similarity=0.458 Sum_probs=325.0
Q ss_pred cCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHC
Q 012098 78 EDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRA 157 (471)
Q Consensus 78 ~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~ 157 (471)
.+..+.+|++++ +||+||||++.|++|+++|++ ++ +++||+|||+++.|++++.+.|+|+||+|.+|++.++++
T Consensus 13 ~~~~~~~l~~~~-~tP~~v~d~~~l~~n~~~l~~-~~----~i~yavKan~~~~il~~~~~~G~g~dvaS~~E~~~a~~~ 86 (420)
T PRK11165 13 TAENLLRLPAEY-GTPLWVYDADIIRRRIAQLRQ-FD----VIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAA 86 (420)
T ss_pred CCcCHHHHHHHh-CCCEEEEcHHHHHHHHHHHhc-cC----cceEEehhCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHc
Confidence 456889999997 999999999999999999986 64 489999999999999999999999999999999999999
Q ss_pred CCCC----CcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCC
Q 012098 158 GFDP----TKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233 (471)
Q Consensus 158 G~~~----~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~s 233 (471)
|++| ++|+|+||+|+.++|+.|++.|+.+++||++|+++|.+.++ +.+|+||||++...+.+..++||+..+
T Consensus 87 G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~i~~~~~----~~~v~lRvn~~~~~~~~~~~~~~~~~s 162 (420)
T PRK11165 87 GYKPGTEPDEIVFTADVIDRATLARVVELKIPVNAGSIDMLDQLGQVSP----GHRVWLRINPGFGHGHSQKTNTGGENS 162 (420)
T ss_pred CCCCCCCCCeEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcC----CCcEEEEECCCCCCCCCCceecCCCCC
Confidence 9998 59999999999999999999999999999999999998764 368999999987766667788998999
Q ss_pred CCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCC
Q 012098 234 KFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313 (471)
Q Consensus 234 KfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~ 313 (471)
|||++.+++.++++.+++. ++++.|||||.||++ +.+.+.+.++.+ .+.+++.|+++++||+||||+++|...+
T Consensus 163 KFGi~~~~~~~~~~~~~~~--~l~l~GlH~H~GS~~-~~~~~~~~~~~l---~~~~~~~g~~~~~IdiGGGf~~~y~~~~ 236 (420)
T PRK11165 163 KHGIWHEDLPAALAVIQRY--GLKLVGIHMHIGSGV-DYGHLEQVCGAM---VRQVIELGQDIEAISAGGGLSIPYREGE 236 (420)
T ss_pred CCCCCHHHHHHHHHHHHhC--CCcEEEEEEeccCCC-ChHHHHHHHHHH---HHHHHHhCCCCcEEEeCCCcccCCCCCC
Confidence 9999999998888888765 799999999999987 666665554443 4455666999999999999999997544
Q ss_pred CCCCCHHHHHHHHHHHHh------cCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCc
Q 012098 314 AVLPKPRNLIDTVRELVL------SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQ 387 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~------~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~ 387 (471)
. .++++++++.+..... ..+++|++|||||++++||++|++|+++|..++++|+++|+|++++.+|.+|+.+|
T Consensus 237 ~-~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~K~~~~~~~~i~D~G~n~l~~p~~~~~~~ 315 (420)
T PRK11165 237 E-PVDTEHYFGLWDAARKRIARHLGHPVKLEIEPGRFLVAESGVLVAQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYH 315 (420)
T ss_pred C-CCCHHHHHHHHHHHHHHHHhhcCCCceEEEccCcceeecceEEEEEEEEEEecCCcEEEEEeCCcccCchhhhccccc
Confidence 3 2356666654433222 13579999999999999999999999999988889999999999999999999988
Q ss_pred ceEEcCCCCC---CCCceEEEEEccCCCCCceeccC-------CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEE
Q 012098 388 HIELVSPAPQ---DAEISKFDVVGPVCESADFLGKE-------RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEY 457 (471)
Q Consensus 388 ~~~~~~~~~~---~~~~~~~~i~G~tC~~~D~l~~~-------~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 457 (471)
++.++..... ..+.++++|+||+|++.|+++.+ +.||++++||+|+|.++|||+++|+++||++|+|++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP~l~~GD~l~i~~~GAY~~~~ss~fn~~~~p~~v 395 (420)
T PRK11165 316 HISVLAADGRSLEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEV 395 (420)
T ss_pred ceEEecCCCcccccCCceEEEEEeCCCCCCCEEeeccCcccceeECCCCCCCCEEEEecCCCCcHHHHHhhcCCCCCcEE
Confidence 8776642211 11246899999999999999876 7899999999999999999999999999999999999
Q ss_pred EEECCeEEEEec
Q 012098 458 WVRSLISIIILP 469 (471)
Q Consensus 458 ~v~~~~~~~~~~ 469 (471)
++++++.++||.
T Consensus 396 ~~~~g~~~~ir~ 407 (420)
T PRK11165 396 LFDNGQARLIRR 407 (420)
T ss_pred EEECCEEEEEEe
Confidence 999999999985
No 6
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=9.3e-71 Score=564.71 Aligned_cols=364 Identities=28% Similarity=0.404 Sum_probs=319.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 171 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k 171 (471)
.|+||||++.|++|+++|+++|+. +++++||+|||+++.|++++.+.|+|+||+|.+|+++|+++|+++++|+|+||+|
T Consensus 3 ~~~~v~d~~~l~~~~~~l~~a~~~-~~~~~yAvKaN~~~~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~K 81 (379)
T cd06836 3 PAVGLYDLDGFRALVARLTAAFPA-PVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPAK 81 (379)
T ss_pred CEEEEEcHHHHHHHHHHHHHhcCC-CcEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCChhhEEEeCCCC
Confidence 589999999999999999999987 5789999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHH-cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHh--HHHHHHHH
Q 012098 172 LLEDLVLAAQEGVFVNVDSEFDLENIVVASRI-AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE--KLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~-~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~--el~~~l~~ 248 (471)
+.++|+.|+++|+.+++||++|+++|.+++++ .+++.+|+|||||+.....+..+++|+..+|||++.+ ++.++++.
T Consensus 82 ~~~~L~~ai~~gv~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~~~skFG~~~~~~~~~~~~~~ 161 (379)
T cd06836 82 TRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEIIDA 161 (379)
T ss_pred CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCCCCCCCCcCcchhHHHHHHHH
Confidence 99999999999999999999999999999877 6777899999999876666777778888999999998 56666665
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHc-C-CCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-G-FEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTV 326 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~-g-~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i 326 (471)
+... ..+.|||||+|||+.+.+.+.++++.+.++++++++. | .++++||+|||||++|...+. .++++++++.+
T Consensus 162 ~~~~---~~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~v~y~~~~~-~~~~~~~~~~i 237 (379)
T cd06836 162 FARR---PWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDI-TPTFADYAAAL 237 (379)
T ss_pred HhcC---CCeEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccccCCCCCCC-CCCHHHHHHHH
Confidence 4443 4578999999999999999999999999999998764 6 589999999999999975433 34788999888
Q ss_pred HHHHhcC---CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEc--CCC-C-CCC
Q 012098 327 RELVLSR---NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELV--SPA-P-QDA 399 (471)
Q Consensus 327 ~~~~~~~---~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~--~~~-~-~~~ 399 (471)
++.+.+. +++|++|||||+++++|++|++|+++|+..+++|+++|+|++++.+|.++...++..+. ... . ...
T Consensus 238 ~~~l~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T cd06836 238 KAAVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTG 317 (379)
T ss_pred HHHHHHHhccCcEEEEecChheeccceEEEEEEEEEEecCCeEEEEEcCCccccchhhhccccCceEEecccccccccCC
Confidence 8776542 58999999999999999999999999988888999999999998888777654343322 111 1 112
Q ss_pred CceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 400 EISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 400 ~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
+..+++|+||+|++.|++.+++.||++++||+|+|.+||||+++|+++||++++|++|+++
T Consensus 318 ~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~~~p~~~~~~ 378 (379)
T cd06836 318 PEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred CceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHhhhCCCCCeEEEec
Confidence 3468999999999999999999999999999999999999999999999999999999986
No 7
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=5.4e-70 Score=556.73 Aligned_cols=355 Identities=32% Similarity=0.476 Sum_probs=312.7
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHC--CCCCCcEEEeC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRA--GFDPTKCIFNG 168 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~--G~~~~~Ii~~g 168 (471)
+||+||||++.|++|+++|++ +... .+++||+|||+++.|++++.++|+|+||+|.+|+++++++ |+++++|+|+|
T Consensus 11 ~tP~~v~d~~~l~~~~~~l~~-~~~~-~~~~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iif~g 88 (368)
T cd06840 11 VGPCYVYDLETVRARARQVSA-LKAV-DSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFTP 88 (368)
T ss_pred CCCEEEecHHHHHHHHHHHHh-CCCC-CeEEEEeccCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcccCCCcceEEEcC
Confidence 699999999999999999985 4432 3799999999999999999999999999999999999998 99999999999
Q ss_pred CCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 169 NGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 169 ~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
|.|+.++|+.|+++|+.+++||++|+++|.+.++ ..+|+||||++...+.+..+++|+..+|||++.+++.++++.
T Consensus 89 p~K~~~~l~~a~~~gv~i~~Ds~~El~~i~~~~~----~~~v~lRi~~~~~~~~~~~~~~~~~~skFG~~~~~~~~~l~~ 164 (368)
T cd06840 89 NFAARSEYEQALELGVNVTVDNLHPLREWPELFR----GREVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDL 164 (368)
T ss_pred CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcc----cCCEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999987753 468999999987777777778888899999999999999998
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~ 328 (471)
+++. ++++.|+|||+|||+.+.+.|.++++.+.+ +.+.+.++++|||||||+++|...+. .++++++.+.+++
T Consensus 165 ~~~~--~l~l~GlhfH~GS~~~~~~~~~~~~~~~~~----l~~~~~~~~~idiGGGf~~~y~~~~~-~~~~~~~~~~i~~ 237 (368)
T cd06840 165 AKKA--GIIVIGLHAHSGSGVEDTDHWARHGDYLAS----LARHFPAVRILNVGGGLGIPEAPGGR-PIDLDALDAALAA 237 (368)
T ss_pred HHhC--CCcEEEEEEECCCCCCCHHHHHHHHHHHHH----HHHhcCCCCEEEecCcccCCCCCCCC-CCCHHHHHHHHHH
Confidence 8875 799999999999999999888777654444 33344579999999999999975443 3468888888888
Q ss_pred HHhcC-CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEE
Q 012098 329 LVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVV 407 (471)
Q Consensus 329 ~~~~~-~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 407 (471)
.+... +++|++|||||++++||+++++|+++|+.++.+|+++|+|++++++|.+|+.++++..+.... ..+..+++|+
T Consensus 238 ~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~~~~~~~-~~~~~~~~v~ 316 (368)
T cd06840 238 AKAAHPQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIVNLSRLD-EPPAGNADVV 316 (368)
T ss_pred HHhhCCCcEEEEecCceeeecceEEEEEEEEEEecCCcEEEEEeCchhcccchhhhcccceeEecCCCC-cCCcceEEEE
Confidence 76543 689999999999999999999999999988889999999999999999999887765544321 2234678999
Q ss_pred ccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 408 GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 408 G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
||+|++.|++..+..||++++||+|+|.+||||+++++++||++|+|++|++
T Consensus 317 Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~fn~~~~~~~v~~ 368 (368)
T cd06840 317 GPICESGDVLGRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVVL 368 (368)
T ss_pred eCCcCCCCEEeecccCCCCCCCCEEEEecCCcchHhhhhhccCCCCCCEEeC
Confidence 9999999999999999999999999999999999999999999999999974
No 8
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=1.2e-69 Score=555.81 Aligned_cols=360 Identities=19% Similarity=0.190 Sum_probs=308.4
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
+||+||||++.|++|+++|+++++..+++++||+|||+++.|++++.++|+|+||+|.+|++.|+++ ++ +++++.||.
T Consensus 2 ~tP~yvyd~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~D~aS~gEl~~al~a-~~-~~~i~~~~~ 79 (380)
T TIGR01047 2 PTPAFVLEEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGCTASGLWEAKLAKEE-FG-KEIHVYSPA 79 (380)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcccccCHHHHHHHHHH-CC-CcEEEECCC
Confidence 7999999999999999999998865467899999999999999999999999999999999999988 76 566777999
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
|+.++|+.|++.|+.+++||++|+++|.+.+++.+++++|+|||||+.....+....||+..||||++.+++.+.+
T Consensus 80 k~~~el~~a~~~g~~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~---- 155 (380)
T TIGR01047 80 YSEEDVPEIIPLADHIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCGQFSRLGVQADHFEESL---- 155 (380)
T ss_pred CCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCCCCCCCCCCHHHHhHhH----
Confidence 9999999999999999999999999999998877777899999999887777777778888999999999876542
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~ 330 (471)
.+++.|+|||+||| .+.+.+.++++.+.++.++ .+.++++||||||||++|.. .+++++.+.+++.+
T Consensus 156 ----~~~i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~~---~~~~~~~iDiGGGfgv~y~~-----~~~~~~~~~i~~~~ 222 (380)
T TIGR01047 156 ----LDGINGLHFHTLCE-KDADALERTLEVIEERFGE---YLPQMDWVNFGGGHHITKPG-----YDVEKLIAVIKAFA 222 (380)
T ss_pred ----hhcCcEEEEecCCC-CCHHHHHHHHHHHHHHHHH---hhCCCCEEEeCCCcCCCCCC-----CCHHHHHHHHHHHH
Confidence 24688999999999 8888887777766655433 23479999999999999852 24677888888888
Q ss_pred hcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCc--------ChhhhhcCcceEEcCCCC-CCCCc
Q 012098 331 LSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI--------RPSLYDAYQHIELVSPAP-QDAEI 401 (471)
Q Consensus 331 ~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~--------~~~l~~~~~~~~~~~~~~-~~~~~ 401 (471)
...+++|++|||||++++||++|++|+++|+. +++|+++|+||++++ +|.+|+.++++....... ...+.
T Consensus 223 ~~~~~~li~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
T TIGR01047 223 ERHGVQVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSFEAHMPDTLEMPYRPSVLGASDPATRENEEISLKEGQ 301 (380)
T ss_pred HHhCCEEEEeCchHHHhcCeeEEEEEEEEEEC-CeeEEEEecChHhcChhhhccCCCcccccCCCccccccccccccCCc
Confidence 77789999999999999999999999999976 788999999999877 555555544433222111 11234
Q ss_pred eEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE-CCeEEEEecC
Q 012098 402 SKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR-SLISIIILPM 470 (471)
Q Consensus 402 ~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~-~~~~~~~~~~ 470 (471)
.+++|+||+|+++|+|.++..+|++++||+|+|.++|||+++|+++||++++|++|+++ +++..+||..
T Consensus 302 ~~~~v~G~~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~smss~fn~~~~p~~v~~~~~g~~~lir~~ 371 (380)
T TIGR01047 302 FSYVLGGCTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKNTTFNGVKLPSLGCLRANGEFQKIRTF 371 (380)
T ss_pred eeEEEEcCCCCcccEEeecccCCCCCCCCEEEEcCcCChhhhccCCCCCCCCCcEEEEecCCcEEEEEec
Confidence 57899999999999999888888999999999999999999999999999999999997 4569999874
No 9
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=1.1e-68 Score=553.92 Aligned_cols=381 Identities=26% Similarity=0.407 Sum_probs=328.6
Q ss_pred CCeEEEcCcCHHHHHHhcCC-CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHH
Q 012098 72 DGFLYCEDVRVQDVMETVEK-RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150 (471)
Q Consensus 72 ~g~l~~~~i~l~~l~~~~~~-tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E 150 (471)
+|++.+++.++.+|++++ + ||+||||++.|++|+++|+++++. +.+++|++|||+++.|++++.+.|.||+|+|.+|
T Consensus 5 ~~~~~~~~~~~~~l~~~~-g~tP~~v~d~~~l~~n~~~l~~~~~~-~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E 82 (398)
T TIGR03099 5 NGCLCVGGIPLTELAARA-GGTPFYAYDRGLVSERVAALRKALPE-ELAIHYAVKANPMPALLAHMAPLVDGFDVASAGE 82 (398)
T ss_pred CCEEEECCccHHHHHHHh-CCCCEEEEeHHHHHHHHHHHHHhccc-cCcEEEEeccCCCHHHHHHHHHcCCcEEEeCHHH
Confidence 788999999999999997 8 999999999999999999999975 4679999999999999999999899999999999
Q ss_pred HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCC
Q 012098 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~ 230 (471)
++.++++|+++++|+|+||+|+.++|+.|+++|+.++|||++|+++|.+++++.+++++|+||||++.... +....+|+
T Consensus 83 ~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~-~~~~~~~~ 161 (398)
T TIGR03099 83 LAVALDTGYDPGCISFAGPGKTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELK-GSGMKMGG 161 (398)
T ss_pred HHHHHHcCCChhHEEEeCCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCC-CcccccCC
Confidence 99999999999899999999999999999999999999999999999999988888899999999865433 33455677
Q ss_pred CCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHH-HHHcCCCCCEEEecCCCCcCC
Q 012098 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDK-IRAQGFEVDYLNIGGGLGIDY 309 (471)
Q Consensus 231 ~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~-l~~~g~~l~~ldiGGGl~i~y 309 (471)
..+|||++.+++.++++.+++. ++++.|+|+|.||++.+.+.+.+++....+.+.+ .++.|.++++||+|||||++|
T Consensus 162 ~~srFGi~~~e~~~~~~~~~~~--~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG~~v~~ 239 (398)
T TIGR03099 162 GAKQFGIDAEQVPAALAFIKAA--DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFGIPY 239 (398)
T ss_pred CCCcCCCCHHHHHHHHHHHHhC--CCeEEEEEecccccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCcccCCC
Confidence 7899999999999999998886 7999999999999988887777777666654443 455689999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChh---
Q 012098 310 YHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPS--- 381 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~--- 381 (471)
..... .++++++...+++.+.. .+++|++|||||++++||+++++|+++|..+++.|+++|+|+++++++.
T Consensus 240 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~ 318 (398)
T TIGR03099 240 FPGNP-PLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASGNF 318 (398)
T ss_pred CCCCC-CCCHHHHHHHHHHHHHHHhhcCCCCEEEEecChheeccceEEEEEEEEEEecCCcEEEEEcCCccccccccccc
Confidence 65432 23566677666655532 3679999999999999999999999999887889999999999987654
Q ss_pred --hhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEE
Q 012098 382 --LYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA-STYNLKMRPPEYW 458 (471)
Q Consensus 382 --l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~v~ 458 (471)
++..++++.+.... .+....+++|+||+|+++|+|.+++.||++++||+|+|.+||||+++|+ ++||++|+|++|+
T Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~G~~C~~~D~~~~~~~lp~~~~GD~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 319 GQVIRRNYPVVIGNRI-GGAVREIASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred cchhccCceeEEccCC-CCCCceEEEEEeCCCCCCCEEeecCcCCCCCCCCEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 23334555544321 1224568899999999999999999999999999999999999999999 5999999999998
Q ss_pred E
Q 012098 459 V 459 (471)
Q Consensus 459 v 459 (471)
+
T Consensus 398 ~ 398 (398)
T TIGR03099 398 V 398 (398)
T ss_pred C
Confidence 4
No 10
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=6.6e-69 Score=551.66 Aligned_cols=364 Identities=24% Similarity=0.358 Sum_probs=324.4
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 171 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k 171 (471)
-|+||||++.|++|+++|+++++. +.+++|++|||+++.|++++.+.|.||+|+|.+|++.++++| ++.+|+|+||+|
T Consensus 2 ~~~yv~d~~~l~~N~~~l~~~~~~-~~~i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E~~~~~~~~-~~~~I~~~gp~k 79 (377)
T cd06843 2 LCAYVYDLAALRAHARALRASLPP-GCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAV-PDAPLIFGGPGK 79 (377)
T ss_pred eEEEEEcHHHHHHHHHHHHHhcCC-CCeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHhcC-CCCeEEEeCCCC
Confidence 489999999999999999999974 457999999999999999998888999999999999999988 578899999999
Q ss_pred cHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 172 LLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 172 ~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
+.++++.|++.|+ .++|||++|+++|.+.+++.+++++|+||||++.+...+.++.+|+..+|||++++++.++++.++
T Consensus 80 ~~~~l~~a~~~gi~~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~srfG~~~~~~~~~~~~~~ 159 (377)
T cd06843 80 TDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR 159 (377)
T ss_pred CHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCCCCCCcCHHHHHHHHHHHH
Confidence 9999999999998 578999999999999998888889999999998765556667777788999999999999999998
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA-QGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
+.+ ++++.|+|||+||++.+.+.|.++++.+.+++.++.+ .|+++++||+|||||++|...+. .++++++++.+++.
T Consensus 160 ~~~-~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGGf~~~y~~~~~-~~~~~~~~~~i~~~ 237 (377)
T cd06843 160 DLP-NIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEE-QFDWAGFCEGLDQL 237 (377)
T ss_pred hCC-CccEEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCccccccCCCCC-CCCHHHHHHHHHHH
Confidence 877 8999999999999999999999999888888777654 58999999999999999975433 34788999999998
Q ss_pred HhcC--CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCC-------CCCC
Q 012098 330 VLSR--NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAP-------QDAE 400 (471)
Q Consensus 330 ~~~~--~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~-------~~~~ 400 (471)
+.++ +++|++|||||++++||+++|+|+++|+.++++|+++|||++++.+|.+|+.+|++.++.... +..+
T Consensus 238 ~~~~~~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (377)
T cd06843 238 LAEYEPGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYPWPRPSVR 317 (377)
T ss_pred HHhcCCCCEEEEccChhhhcCceEEEEEEEEEeecCCcEEEEEeCccccccchHHhcCCCceEeccccccccccccccCC
Confidence 8765 689999999999999999999999999988888999999999998999998887765433211 1124
Q ss_pred ceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCC-CCCCCCCCcEEEE
Q 012098 401 ISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS-TYNLKMRPPEYWV 459 (471)
Q Consensus 401 ~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~-~fn~~~~p~~v~v 459 (471)
..+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|++ +||++|+|++|++
T Consensus 318 ~~~~~v~G~~C~~~D~l~~~~~lp~~~~GD~l~i~~~GAY~~~~s~~~fn~~~~p~~v~~ 377 (377)
T cd06843 318 DTPVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIYL 377 (377)
T ss_pred ceEEEEEeCCCCCCCEEeeccccCCCCCCCEEEEcCCCccchhhchhhhhCCCCCCEEeC
Confidence 5688999999999999999999999999999999999999999996 9999999999974
No 11
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=1.1e-68 Score=549.69 Aligned_cols=366 Identities=43% Similarity=0.693 Sum_probs=332.8
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
+||+||+|++.|++|+++|+++++..+++++|++|||+.+.|++++.+.|.|++|+|..|+++++++|+++++|+|+||+
T Consensus 2 ~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~yavKaN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~I~~~~p~ 81 (373)
T cd06828 2 GTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGNG 81 (373)
T ss_pred CCCEEEEcHHHHHHHHHHHHHhhCCCCcEEEEEehhCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCcccEEEeCCC
Confidence 79999999999999999999999844578999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCC-CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEG-VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 171 k~~~~l~~a~~~g-v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
|+.++++.++++| +.+++||.+|+++|.+.+++.+++++|+|||+++.+...|..++||...+|||++++|+.++++.+
T Consensus 82 k~~~~l~~a~~~g~~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~~~srfGi~~~e~~~~~~~~ 161 (373)
T cd06828 82 KSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRA 161 (373)
T ss_pred CCHHHHHHHHHcCCeEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999 579999999999999999888888999999999888888888899978899999999999999999
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
+..+ ++++.|+|||+||+..+.+.+.++++++.++++++++.|+++++||+||||+++|...+ ..++++++++.|++.
T Consensus 162 ~~~~-~l~l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~~~~~~-~~~~~~~~~~~i~~~ 239 (373)
T cd06828 162 KELP-GLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDED-EPLDIEEYAEAIAEA 239 (373)
T ss_pred HhCC-CCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCCCcccCCCC-CCCCHHHHHHHHHHH
Confidence 8877 89999999999999989999999999999999999988999999999999999996543 235778888888776
Q ss_pred HhcC-----CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEE
Q 012098 330 VLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKF 404 (471)
Q Consensus 330 ~~~~-----~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 404 (471)
+.++ ++++++|||||++++||+++++|+++|+..++.|+++|+|++++++|.+|+.++++.++.... ..+..++
T Consensus 240 ~~~~~~~~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 318 (373)
T cd06828 240 LKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKPG-EGETEKV 318 (373)
T ss_pred HHHHHccCCCceEEEecCcceeecceEEEEEEEEEEecCCCEEEEEeCCcccchhhHhcCCccceEEccCCC-CCCceEE
Confidence 6553 689999999999999999999999999987889999999999988888888776665544321 1346789
Q ss_pred EEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 405 DVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 405 ~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
+|+||+|++.|++.++..||++++||+|+|.+||||+++++++||++++|++|++
T Consensus 319 ~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~f~~~~~p~~v~~ 373 (373)
T cd06828 319 DVVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV 373 (373)
T ss_pred EEEeCCCCCCCEEeecccCCCCCCCCEEEEeCCCcchHHHHHHhhCCCCCcEEeC
Confidence 9999999999999999999999999999999999999999999999999999975
No 12
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=2.1e-68 Score=548.35 Aligned_cols=363 Identities=29% Similarity=0.471 Sum_probs=314.9
Q ss_pred HHHhcCCCcEEEEeHHHHHHHHHHHHHHhcC--CCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCC
Q 012098 85 VMETVEKRPFYLYSKPQITRNVEAYKQALEG--LNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPT 162 (471)
Q Consensus 85 l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~--~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~ 162 (471)
|++++ +||+|+||++.|++|+++++++++. .+++++|++|||+++.|++.+.+.|++++|+|.+|+++++++|++++
T Consensus 1 l~~~~-~tP~~v~d~~~l~~n~~~l~~~~~~~~~~~~i~yavKaN~~~~vl~~l~~~g~~~dvaS~~E~~~~~~~G~~~~ 79 (379)
T cd06841 1 LLESY-GSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGK 79 (379)
T ss_pred Chhhc-CCCeEEEeHHHHHHHHHHHHHHHhhcCCCeEEEEEehhcccHHHHHHHHHcCCeEEEeCHHHHHHHHHcCCChH
Confidence 35676 8999999999999999999999963 24689999999999999999999999999999999999999999989
Q ss_pred cEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHH
Q 012098 163 KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL 242 (471)
Q Consensus 163 ~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el 242 (471)
+|+|+||.|++++++.|+++|+.++|||++|+++|.+.+++.+++++|+||||++... +.++|||++.+|+
T Consensus 80 ~Ii~~g~~k~~~~l~~a~~~g~~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~---------~~~~rfGi~~~e~ 150 (379)
T cd06841 80 RIIFNGPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNMNYGN---------NVWSRFGFDIEEN 150 (379)
T ss_pred HEEEECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCC---------CCCCCCCCchhhh
Confidence 9999999999999999999999999999999999999998888889999999986321 1389999999887
Q ss_pred HHHHHHHHc---CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC-----CC
Q 012098 243 QWFLDAVKA---HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT-----GA 314 (471)
Q Consensus 243 ~~~l~~l~~---~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~-----~~ 314 (471)
.++++.++. .+ ++++.|+|||+||++.+.+.+.++++++.++++++ .|.++++|||||||+++|... ..
T Consensus 151 ~~~~~~~~~~~~~~-~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~idiGGG~~~~y~~~~~~~~~~ 227 (379)
T cd06841 151 GEALAALKKIQESK-NLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FGLELEYLDLGGGFPAKTPLSLAYPQED 227 (379)
T ss_pred HHHHHHHHHhhcCC-CeeEEEEEecCCCccCChHHHHHHHHHHHHHHHHh--cCCCCCEEEeCCCcCcCcCccccccccC
Confidence 666655543 35 89999999999999999999999999988888877 589999999999999999652 12
Q ss_pred CCCCHHHHHHHHHHHHhc------CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 315 VLPKPRNLIDTVRELVLS------RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~------~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
..++++++++.|.+.+.+ .+++|++|||||++++||+++|+|+++|...++.|+++|+|++++.++ |+.+++
T Consensus 228 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~--~~~~~~ 305 (379)
T cd06841 228 TVPDPEDYAEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTI--FWYHHP 305 (379)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCEEEEecCcceeccceEEEEEEEEEEEcCCcEEEEEeCCcccCcCc--ccCCce
Confidence 235677777777665543 357999999999999999999999999987788999999999988766 666666
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCe
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLI 463 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~ 463 (471)
+.+.....++.+..+++|+||+|+++|++++++.||++++||+|+|.++|||+++|+++| .+++|++|++++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~s~~f-~~~~p~~v~~~~~~ 379 (379)
T cd06841 306 ILVLRPGKEDPTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQF-IRPRPAVYLIDNNG 379 (379)
T ss_pred EEEeccCCCCCCcceEEEECCCcCCCCEEeeCCcCCCCCCCCEEEEeCCCCCChhhCccc-cCCCCcEEEEeCCC
Confidence 655543222234568999999999999999999999999999999999999999999999 58999999998763
No 13
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-70 Score=532.94 Aligned_cols=363 Identities=34% Similarity=0.487 Sum_probs=318.2
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 90 ~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
+..||||+|+.+|.++.++|++++|+. +++||||||+++.|++.|.+.|+||+|+|..|+++++.+|++|+||||++|
T Consensus 54 e~~aFfv~Dl~~I~Rkl~~w~~~LprV--~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanp 131 (448)
T KOG0622|consen 54 EKQAFFVADLGAIERKLEAWKKALPRV--RPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANP 131 (448)
T ss_pred ccCceEEecHHHHHHHHHHHHHhcccC--CCceeEEeCCCHHHHHHHHHcCccceecChHHHHHHHhcCCChHHeEecCC
Confidence 358999999999999999999999985 699999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 170 GKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+|+.+.|+.|++.||. .++||..|+.++... .+..+++|||+++.+ .+||....|||++.+++.++++.
T Consensus 132 cK~~s~IkyAa~~gV~~~tfDne~el~kv~~~----hP~a~llLrIatdds------~a~~~l~~KFG~~~~~~~~lLd~ 201 (448)
T KOG0622|consen 132 CKQVSQIKYAAKHGVSVMTFDNEEELEKVAKS----HPNANLLLRIATDDS------TATCRLNLKFGCSLDNCRHLLDM 201 (448)
T ss_pred CccHHHHHHHHHcCCeEEeecCHHHHHHHHHh----CCCceEEEEEccCCC------cccccccCccCCCHHHHHHHHHH
Confidence 9999999999999996 799999999998654 678899999998865 24667799999999999999999
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~ 328 (471)
+|++ +++++|+|||+||.+.+++.|+++++.++.++++..+.|+++.+||+||||+.++.+. ..++.+.++++...+
T Consensus 202 ak~l--~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~-~~fe~i~~~In~ald 278 (448)
T KOG0622|consen 202 AKEL--ELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHA-VVFEEIADVINTALD 278 (448)
T ss_pred HHHc--CceEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCceEEEeecCCCCCCccchh-hhhhhHHHHHHHHHH
Confidence 9998 7999999999999999999999999999999999999999999999999998877543 334333344333333
Q ss_pred HHhcC-CcEEEEcccceeecccceEEEEEEEEEeeCce-------------eEEEEcCCCCCCcChhhhhcCcceEEcCC
Q 012098 329 LVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTK-------------NFIVIDGSMAELIRPSLYDAYQHIELVSP 394 (471)
Q Consensus 329 ~~~~~-~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~-------------~~~ivD~g~~~~~~~~l~~~~~~~~~~~~ 394 (471)
..-.. +++++.|||||+|+++.+|+++|+++|+.... .|++.||.|+.+. +.+|+..+++..+..
T Consensus 279 ~~Fp~~~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfn-ciL~D~~~~i~~~~~ 357 (448)
T KOG0622|consen 279 LYFPSGGVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFN-CILFDHQHPIPLVVK 357 (448)
T ss_pred HhCCCCCceEEeccchheeechheeeeeeeeeeeccccccCccccccCceEEEEEccceeeeec-hhhhcccCCcccccC
Confidence 22233 89999999999999999999999999985422 4889999999875 889998887765443
Q ss_pred C-CCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECC-eEEEEe
Q 012098 395 A-PQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL-ISIIIL 468 (471)
Q Consensus 395 ~-~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~-~~~~~~ 468 (471)
+ .++.+...++|+||||++.|++.++..||.+.+||||+|+|||||+++++|.||++++|.+||+..+ .|..||
T Consensus 358 ~~~e~e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~s~~~~e~~r 433 (448)
T KOG0622|consen 358 DPSEEEPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKIYYVMSDGDWEKIR 433 (448)
T ss_pred CCccccceeeeeeecCCcchHHHHHhhccCCCCCccCeEEEccCCccccccccccCCCCCCceEEEeccccHHHhh
Confidence 3 3445578899999999999999999999999999999999999999999999999999999999654 555544
No 14
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=8.6e-68 Score=544.66 Aligned_cols=368 Identities=31% Similarity=0.473 Sum_probs=320.9
Q ss_pred HHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 86 METVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 86 ~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
++++ +||+||||++.|++|+++|+++++. +.+++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|+++++|+
T Consensus 2 ~~~~-~tP~~v~d~~~l~~n~~~l~~~~~~-~~~~~yavKan~~~~v~~~l~~~g~g~~vaS~~E~~~~~~~G~~~~~I~ 79 (382)
T cd06839 2 ADAY-GTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKIL 79 (382)
T ss_pred cccc-CCCEEEEeHHHHHHHHHHHHHhcCC-CcEEEEEeccCCCHHHHHHHHHcCCCEEEeCHHHHHHHHHcCCCHHHEE
Confidence 4666 8999999999999999999999986 4689999999999999999999999999999999999999999988999
Q ss_pred EeCCCCcHHHHHHHHhCC-CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEG-VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~g-v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~ 244 (471)
|+||+|++++++.+++.| ..++|||++|+++|.+.+++.+++++|+||||++.+... ....+++..+|||++.+++.+
T Consensus 80 ~~~~~k~~~~l~~a~~~g~~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~-~g~~~~~~~sKfG~~~~~~~~ 158 (382)
T cd06839 80 FAGPGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKG-SGMKMGGGPSQFGIDVEELPA 158 (382)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCC-CccccCCCCCCcCCCHHHHHH
Confidence 999999999999999999 589999999999999998888888999999998755432 223455678999999999999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA-QGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
+++.+++.+ ++++.|||||.||++.+.+.+.++++++.++++++++ .|.++++||+|||+|++|...+. .+++.++.
T Consensus 159 ~~~~~~~~~-~l~l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG~~~~~~~~~~-~~~~~~~~ 236 (382)
T cd06839 159 VLARIAALP-NLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGET-PLDLEALG 236 (382)
T ss_pred HHHHHHhCC-CCcEEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEecCccccccCCCCC-CCCHHHHH
Confidence 999988866 8999999999999988888888899999999888875 68999999999999999975433 34677777
Q ss_pred HHHHHHHhc-----CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhh-----hhcCcceEEcC
Q 012098 324 DTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL-----YDAYQHIELVS 393 (471)
Q Consensus 324 ~~i~~~~~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l-----~~~~~~~~~~~ 393 (471)
..+...+.+ .+++|++|||||++++||++|++|+++|+..+++|+++|+|++++.++.. +..++++.+..
T Consensus 237 ~~i~~~l~~~~~~~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (382)
T cd06839 237 AALAALLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAILN 316 (382)
T ss_pred HHHHHHHHHHhcCCCCceEEEecChhhhhhceEEEEEEEEEeecCCCEEEEEECCcccchhhhccccccccccceeEEcc
Confidence 777666543 35799999999999999999999999999888899999999998877654 44455554443
Q ss_pred CCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEEE
Q 012098 394 PAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMA-STYNLKMRPPEYWV 459 (471)
Q Consensus 394 ~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~v~v 459 (471)
.. .+.+..+++|+||+|++.|++.++..||++++||+|+|.+||||+++|+ ++||++|+|++|++
T Consensus 317 ~~-~~~~~~~~~v~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~~~~~ 382 (382)
T cd06839 317 RM-GGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred CC-CCCCceEEEEEeCCCCCCCEEeecccCCCCCCCCEEEEecCCCcccccChhhHhCCCCCCEEeC
Confidence 21 1234568999999999999999999999999999999999999999998 59999999999985
No 15
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=2.8e-67 Score=539.62 Aligned_cols=351 Identities=22% Similarity=0.360 Sum_probs=298.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
++||||||++.|++|+++|+++|+. ++++||+|||+++.|++++.+.|+|+||+|.+|+++|+++|+++++|+|+||+
T Consensus 12 ~~p~yv~d~~~i~~~~~~l~~~lp~--~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Iif~gp~ 89 (394)
T cd06831 12 KNAFFVGDLGKIVKKHSQWQTVMAQ--IKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC 89 (394)
T ss_pred CCCeEEEEHHHHHHHHHHHHHHCCC--CeEEeeeccCCCHHHHHHHHHcCCCeEeCCHHHHHHHHhcCCCcCCEEEeCCC
Confidence 7999999999999999999999985 57999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 171 k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
|+.++|+.|++.|+ .+++||++||++|.+.+ +..+|+|||++..... ++...+|||++.+++.++++.+
T Consensus 90 K~~~~l~~a~~~Gv~~i~vDS~~El~~i~~~~----~~~~v~lRi~~~~~~~------~~~~~~KFGi~~~~~~~~l~~~ 159 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKLLLHIATEDNIG------GEEMNMKFGTTLKNCRHLLECA 159 (394)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHhC----CCCcEEEEEeccCCCC------CCccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999 58999999999998754 4578999999864322 2223689999999999999998
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
++. +++++|+|||+|||+.+.+.|.++++.+..+++.+++.|+++++|||||||+.. .++++++++.|++.
T Consensus 160 ~~~--~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf~~~-------~~~~~~~~~~i~~~ 230 (394)
T cd06831 160 KEL--DVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTGS-------EIQLEEVNHVIRPL 230 (394)
T ss_pred HHC--CCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCcCCC-------CCCHHHHHHHHHHH
Confidence 886 799999999999999999999999988888888888889999999999999741 14678888888887
Q ss_pred HhcC-----CcEEEEcccceeecccceEEEEEEEEEeeCc-eeEEEEcCCCCC------CcChhhhhcCcceE-------
Q 012098 330 VLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT-KNFIVIDGSMAE------LIRPSLYDAYQHIE------- 390 (471)
Q Consensus 330 ~~~~-----~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~-~~~~ivD~g~~~------~~~~~l~~~~~~~~------- 390 (471)
+.++ +++|++|||||+++++|+|+|+|+++|+..+ ..++.+|++... .+++.+|+.++.+.
T Consensus 231 l~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~d~~~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~ 310 (394)
T cd06831 231 LDVYFPEGSGIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTT 310 (394)
T ss_pred HHHhcCcCCCCEEEEeCChhhhhcceEEEEEEEEEEeeccccccccccccCCCCceeEEEEcCceechhhhhhcccCccc
Confidence 7642 5799999999999999999999999997543 345566654321 12334566554432
Q ss_pred --EcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECC
Q 012098 391 --LVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL 462 (471)
Q Consensus 391 --~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~ 462 (471)
.......+.+..+++|+||+|++.|++.+++.||++++||||+|.++|||+.+|+++||++++|++|++.+.
T Consensus 311 ~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~~~ 384 (394)
T cd06831 311 PEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSF 384 (394)
T ss_pred ceeeccCCCCCCceeEEEEeCCCCHHHeecccCcCCCCCCCCEEEECCCCCcccccccCCCCCCCCcEEEEECc
Confidence 011101122345789999999999999999999999999999999999999999999999999999999764
No 16
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=1.7e-66 Score=532.45 Aligned_cols=361 Identities=36% Similarity=0.586 Sum_probs=327.1
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 171 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k 171 (471)
||+||+|++.|++|++.|+++++. +.+++|++|||+++.|++++.+.|+|++|+|..|++.++++|+++++|+|+||.|
T Consensus 1 TP~~vid~~~l~~n~~~l~~~~~~-~~~i~~avKan~~~~i~~~l~~~G~g~~vas~~E~~~~~~~G~~~~~iv~~gp~~ 79 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPS-GVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAK 79 (368)
T ss_pred CCEEEeeHHHHHHHHHHHHHhCCC-CCeEEEEEccCCCHHHHHHHHHcCCcEEEeCHHHHHHHHHcCCCHHHEEEcCCCC
Confidence 799999999999999999999983 5689999999999999999999999999999999999999999989999999999
Q ss_pred cHHHHHHHHhCC-CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 172 LLEDLVLAAQEG-VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 172 ~~~~l~~a~~~g-v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
+.++++.+++.| ..+++||++|+++|.+.+++.+++.+|+||||++.....+ ++.+++..+|||++.+++.++++.++
T Consensus 80 ~~~~l~~~~~~~~~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~-~~~~~~~~srfGi~~~e~~~~~~~~~ 158 (368)
T cd06810 80 SVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTH-KISTGGLKSKFGLSLSEARAALERAK 158 (368)
T ss_pred CHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcc-cCccCCCCCCcCCCHHHHHHHHHHHH
Confidence 999999999999 5899999999999999988888889999999998776666 77888888999999999999999988
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~ 330 (471)
+. ++++.|+|+|+||+..+.+.+.++++.+.++++.+++.|.++++||+||||+++|.. ..++++++++.+.+.+
T Consensus 159 ~~--~l~l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~~---~~~~~~~~~~~i~~~~ 233 (368)
T cd06810 159 EL--DLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDE---QPLDFEEYAALINPLL 233 (368)
T ss_pred hC--CCcEEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccCC---CCCCHHHHHHHHHHHH
Confidence 87 499999999999999999999999999999999999889999999999999999972 2346788888887776
Q ss_pred hc-----CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhh-hhcCcceEEcCCCCCCCCceEE
Q 012098 331 LS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL-YDAYQHIELVSPAPQDAEISKF 404 (471)
Q Consensus 331 ~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~ 404 (471)
.. .++++++||||++++++++++++|+++|+..+++|+++|+|++.++++.+ ++..+++.++.......+..++
T Consensus 234 ~~~~~~~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (368)
T cd06810 234 KKYFPNDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHPITPLKAPGPDEPLVPA 313 (368)
T ss_pred HHHhccCCCcEEEEecChhhhhhceEEEEEEEEEEecCCcEEEEEeCccccccccccccCCcceeEEeCCCcccCCceeE
Confidence 54 25799999999999999999999999999888899999999999988887 6666666665543222356789
Q ss_pred EEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 405 DVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 405 ~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
+|+||+|+++|++..+..+|++++||+|+|.++|||+++++++||++++|++|++
T Consensus 314 ~i~G~~C~~~D~~~~~~~lp~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 368 (368)
T cd06810 314 TLAGPLCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYLV 368 (368)
T ss_pred EEECCCCCCCcEEeecccCCCCCCCCEEEEcCCCCCchhhcccccCCCCCcEEeC
Confidence 9999999999999999999999999999999999999999999999999999975
No 17
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=1.4e-66 Score=527.94 Aligned_cols=346 Identities=20% Similarity=0.230 Sum_probs=291.0
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK 171 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k 171 (471)
||+||||++.|++|+++|++++...+++++||+|||+++.|++++.++|+||||+|.+|+++|+.+ +++++|++ +|.|
T Consensus 1 tP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~a~~~-~~~~~i~~-~~~k 78 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREE-FGGEVHTY-SPAY 78 (346)
T ss_pred CCeEEeeHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEecCHHHHHHHHHH-CCCceEEE-CCCC
Confidence 799999999999999999998753357899999999999999999999999999999999999986 34445555 8889
Q ss_pred cHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 172 LLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 172 ~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
+.++|+.|++.|+.+++||++||++|.+.+++ ++.+|+|||||+...+.+..++||+..+|||++.+++.+.
T Consensus 79 ~~~el~~a~~~~~~~~~Ds~~EL~~l~~~~~~--~~~~v~lRvnp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~------ 150 (346)
T cd06829 79 RDDEIDEILRLADHIIFNSLSQLERFKDRAKA--AGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEE------ 150 (346)
T ss_pred CHHHHHHHHHcCCEEEECCHHHHHHHHHHHhc--cCCeEEEEECCCCCCCCCceecCCCCCCCCCCChHHhhhh------
Confidence 99999999999889999999999999998764 5679999999988777777888888899999999876531
Q ss_pred CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHh
Q 012098 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331 (471)
Q Consensus 252 ~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~ 331 (471)
. ++++.|+|||+|||+ +.+.|.++++.+.+++..+ +.++++||||||||++|.. .+++++.+.+++.++
T Consensus 151 ~--~~~v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~~~---~~~~~~lDiGGGf~v~~~~-----~~~~~~~~~i~~~~~ 219 (346)
T cd06829 151 D--LDGIEGLHFHTLCEQ-DFDALERTLEAVEERFGEY---LPQLKWLNLGGGHHITRPD-----YDVDRLIALIKRFKE 219 (346)
T ss_pred h--hcCceEEEEccCccc-CHHHHHHHHHHHHHHHHHH---HhcCcEEEcCCCcCCCcCC-----CCHHHHHHHHHHHHH
Confidence 2 467899999999999 9999988888777665433 3479999999999998732 257888888888887
Q ss_pred cCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCC
Q 012098 332 SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVC 411 (471)
Q Consensus 332 ~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC 411 (471)
++++++++|||||+++++|+++|+|+++|+. +++|+++|+|+++++.+.+...+++. +.....++.+..+++|+||+|
T Consensus 220 ~~~~~li~EPGR~lva~ag~lvt~V~~~K~~-~~~~~~~d~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~Gp~C 297 (346)
T cd06829 220 KYGVEVYLEPGEAVALNTGYLVATVLDIVEN-GMPIAILDASATAHMPDVLEMPYRPP-IRGAGEPGEGAHTYRLGGNSC 297 (346)
T ss_pred HhCCEEEEeCchhhhhcceEEEEEEEEEEEc-CceEEEEeCChhhcCchhhccCCCcc-ccCCCCCCCCceEEEEEcCCC
Confidence 7789999999999999999999999999987 67899999999988755432222222 222111123456889999999
Q ss_pred CCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 412 ESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 412 ~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
++.|++.....+|++++||+|+|.++|||+++|+++||++++|++|+++
T Consensus 298 ~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fn~~~~p~~v~~~ 346 (346)
T cd06829 298 LAGDVIGDYSFDEPLQVGDRLVFEDMAHYTMVKTNTFNGVRLPSIAIRD 346 (346)
T ss_pred CcccEEeecccCCCCCCCCEEEEeCchhhhhhhhccccCCCCCeEEecC
Confidence 9999998644444699999999999999999999999999999999874
No 18
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=7.3e-66 Score=535.16 Aligned_cols=361 Identities=24% Similarity=0.360 Sum_probs=306.4
Q ss_pred HHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCC--CceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCC
Q 012098 82 VQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGL--NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGF 159 (471)
Q Consensus 82 l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~--~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~ 159 (471)
|.+|++++ +||+||||++.|++|+++|+++++.. +.+++|++|||+++.|++.+.+.|+|++|+|.+|++.++++|+
T Consensus 1 ~~~l~~~~-~TP~~v~d~~~l~~N~~~l~~~~~~~~~~~~~~yavKaN~~~~il~~l~~~G~g~dvaS~~E~~~~~~~G~ 79 (423)
T cd06842 1 LVALVEAY-GSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGV 79 (423)
T ss_pred ChHHHHhh-CCCEEEEcHHHHHHHHHHHHHHHHHhCCCeEEEEEeccCCCHHHHHHHHHcCCCEEECCHHHHHHHHHCCC
Confidence 45788887 99999999999999999999999742 4679999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHH-cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC
Q 012098 160 DPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRI-AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238 (471)
Q Consensus 160 ~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~-~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~ 238 (471)
++++|+|+|+.|+.++++.|++.|+.+++||++|+++|.+++++ .+++++|+||||++.. +.++|||++
T Consensus 80 ~~~~I~~~g~~k~~~~i~~a~~~gi~i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~----------~~~sRfGi~ 149 (423)
T cd06842 80 RGDRIVATGPAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA----------SLPSRFGMP 149 (423)
T ss_pred CCCeEEEECCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC----------CCCCCCCCC
Confidence 99999999999999999999999999999999999999999887 7788999999998632 238999999
Q ss_pred HhHHHHHHHHHHcC-CCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC---
Q 012098 239 NEKLQWFLDAVKAH-PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA--- 314 (471)
Q Consensus 239 ~~el~~~l~~l~~~-~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~--- 314 (471)
.+++.++++.+++. + ++++.|||+|+||+ +.+.+.++++.+.++++.+++.|+++++||+|||||++|...+.
T Consensus 150 ~~e~~~~~~~i~~~~~-~l~l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~y~~~~~~~~ 226 (423)
T cd06842 150 AAEVRTALERLAQLRE-RVRLVGFHFHLDGY--SAAQRVAALQECLPLIDRARALGLAPRFIDIGGGFPVSYLADAAEWE 226 (423)
T ss_pred HHHHHHHHHHHHhcCC-CCeEEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCcCCcHHHHH
Confidence 99999999999887 6 89999999999998 67888899999999999998889999999999999999975421
Q ss_pred --------------C----------------------CCCHHHHHHHHH-----------HHHhcCCcEEEEcccceeec
Q 012098 315 --------------V----------------------LPKPRNLIDTVR-----------ELVLSRNLNLIIEPGRSLIA 347 (471)
Q Consensus 315 --------------~----------------------~~~~~~~~~~i~-----------~~~~~~~~~l~~EpGR~lva 347 (471)
. ..+.+++++.+. +.+...+++|++||||++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~EpGR~lva 306 (423)
T cd06842 227 AFLAALTEALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLD 306 (423)
T ss_pred HHHHhhhhhhhccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhccccccccHHHHHHhcCCEEEEcCCHHHHh
Confidence 0 013444544443 33334468999999999999
Q ss_pred ccceEEEEEEEEEee-CceeEEEEcCCCCCCcChhhhhcCcceEE---cCCCC-CCCCceEEEEEccCCCCCceecc-CC
Q 012098 348 NTCCLVNHVTGVKTN-GTKNFIVIDGSMAELIRPSLYDAYQHIEL---VSPAP-QDAEISKFDVVGPVCESADFLGK-ER 421 (471)
Q Consensus 348 ~ag~lvt~V~~vk~~-~~~~~~ivD~g~~~~~~~~l~~~~~~~~~---~~~~~-~~~~~~~~~i~G~tC~~~D~l~~-~~ 421 (471)
+||+|||+|+++|+. +++.|+++||||+++.+ |+.++.+.. ..+.. ......+++|+||+|+++|+|++ ++
T Consensus 307 ~ag~lvt~V~~vK~~~~~~~~~~~Dgg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~ 383 (423)
T cd06842 307 QCGLTVARVAFVKQLGDGNHLIGLEGNSFSACE---FSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKI 383 (423)
T ss_pred hcCeEEEEEEEEeecCCCCeEEEEecCCCcCCc---cccceecCceeccCCCCcCCCCCceEEEeCccccchhhhhhhhc
Confidence 999999999999987 56789999999998742 555443321 11110 01234678899999999999995 66
Q ss_pred CCC-CCCCCCEEEEcCCCccccccC-CCCCCCCCCcEEEE
Q 012098 422 ELP-TPDRGAGLVVHDAGAYCMSMA-STYNLKMRPPEYWV 459 (471)
Q Consensus 422 ~lP-~~~~GD~l~~~~~GAY~~~~~-~~fn~~~~p~~v~v 459 (471)
.|| ++++||+|+|++||||+++++ ++||++|+|++|+|
T Consensus 384 ~lp~~~~~GD~l~~~~~GAY~~~~~~~~fn~~~~p~ev~~ 423 (423)
T cd06842 384 PFPRLPKPGDLLVFPNTAGYQMDFLESRFHRHPLPRRVVV 423 (423)
T ss_pred cCCCCCCCCCEEEEecchHHHHHhhhhhhcCCCCCccccC
Confidence 899 599999999999999999655 79999999999975
No 19
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=2.9e-65 Score=570.63 Aligned_cols=364 Identities=33% Similarity=0.462 Sum_probs=321.2
Q ss_pred CHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHC--C
Q 012098 81 RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRA--G 158 (471)
Q Consensus 81 ~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~--G 158 (471)
.+.++++ . +||+||||++.|++|+++|++.++. .+++||+|||+++.|++++.+.|+|+||+|.+|+++|+++ |
T Consensus 494 ~l~~~~~-~-~tP~yV~d~~~i~~n~~~l~~~~~~--~~i~yAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G 569 (861)
T PRK08961 494 RLLTLSD-A-GSPCYVYHLPTVRARARALAALAAV--DQRFYAIKANPHPAILRTLEEEGFGFECVSIGELRRVFELFPE 569 (861)
T ss_pred HHHHHhc-c-CCCEEEEEHHHHHHHHHHHHhcCCC--CcEEEEeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHhcCC
Confidence 4556665 3 8999999999999999999985443 4699999999999999999999999999999999999997 9
Q ss_pred CCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC
Q 012098 159 FDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238 (471)
Q Consensus 159 ~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~ 238 (471)
+++++|+|+||.|+.++|+.|+++|+.+++||++|+++|.+.++ ..+|+||||++...+.+..+.+|+..+|||++
T Consensus 570 ~~~~~Ii~~gp~K~~~~l~~A~~~gv~i~vDS~~EL~~i~~~~~----~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~ 645 (861)
T PRK08961 570 LSPERVLFTPNFAPRAEYEAAFALGVTVTLDNVEPLRNWPELFR----GREVWLRIDPGHGDGHHEKVRTGGKESKFGLS 645 (861)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhCC----CCcEEEEECCCCCCCCCcccccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999988753 36899999998776677777888889999999
Q ss_pred HhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCC
Q 012098 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPK 318 (471)
Q Consensus 239 ~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~ 318 (471)
++++.++++.+++. ++++.|+|||+|||+.+.+.|++.++.+.++.+. ..++++||+||||+++|...+. .++
T Consensus 646 ~~~~~~~~~~~~~~--~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~----~~~~~~iDiGGGf~v~y~~~~~-~~~ 718 (861)
T PRK08961 646 QTRIDEFVDLAKTL--GITVVGLHAHLGSGIETGEHWRRMADELASFARR----FPDVRTIDLGGGLGIPESAGDE-PFD 718 (861)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHh----ccCCcEEEecCccCcCCCCCCC-CCC
Confidence 99999999988875 7999999999999999998888776665555443 4579999999999999975443 346
Q ss_pred HHHHHHHHHHHHhcC-CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCC
Q 012098 319 PRNLIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQ 397 (471)
Q Consensus 319 ~~~~~~~i~~~~~~~-~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~ 397 (471)
++++.+.+++.+..+ +++|++|||||++++||+++++|+++|+.++++|+++|+|++++++|.+|+.+|.+..+....
T Consensus 719 ~~~~~~~i~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~~d~G~~~l~~p~~~~~~~~~~~~~~~~- 797 (861)
T PRK08961 719 LDALDAGLAEVKAQHPGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLETGMNSLIRPALYGAYHEIVNLSRLD- 797 (861)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEccCceeeecceEEEEEEEEEEecCCceEEEECCcccccCChhhhcccccceecCCCC-
Confidence 888999998877553 689999999999999999999999999988889999999999999999999887765554322
Q ss_pred CCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 398 DAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 398 ~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
..+..+++|+||+|+++|+|++++.||++++||+|+|.+||||+++|+++||++|+|++|+++
T Consensus 798 ~~~~~~~~v~Gp~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fn~~p~p~ev~~~ 860 (861)
T PRK08961 798 EPAAGTADVVGPICESSDVLGKRRRLPATAEGDVILIANAGAYGYSMSSTYNLREPAREVVLD 860 (861)
T ss_pred CCCceEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEeCCCcchHHHhhhhhCCCCCcEEEEc
Confidence 234568899999999999999999999999999999999999999999999999999999984
No 20
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=2.1e-63 Score=508.41 Aligned_cols=352 Identities=28% Similarity=0.412 Sum_probs=309.0
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
+||+|+||++.|++|+++|++++++ .+++|++|||+++.|++++.+.|+||+|+|.+|++.++++|+++++|+|+||.
T Consensus 1 ~tP~~vid~~~l~~N~~~~~~~~~~--~~~~~avKAN~~~~v~~~l~~~G~g~~vaS~~E~~~~~~~G~~~~~i~~~~~~ 78 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKALPR--VRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPC 78 (362)
T ss_pred CCCEEEEeHHHHHHHHHHHHHHCCC--CeEEEEeccCCCHHHHHHHHHcCCCeEecCHHHHHHHHHcCCCcceEEEcCCC
Confidence 4899999999999999999999975 47999999999999999999999999999999999999999998899999999
Q ss_pred CcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 171 k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
|++++++.++++|+. +++||++|++++.+.++ ..++.|||+++.+.+. +...+|||++++++.++++.+
T Consensus 79 k~~~~l~~a~~~gi~~~~~ds~~el~~l~~~~~----~~~v~vri~~~~~~~~------~~~~sRfGi~~~~~~~~~~~~ 148 (362)
T cd00622 79 KSISDIRYAAELGVRLFTFDSEDELEKIAKHAP----GAKLLLRIATDDSGAL------CPLSRKFGADPEEARELLRRA 148 (362)
T ss_pred CCHHHHHHHHHcCCCEEEECCHHHHHHHHHHCC----CCEEEEEEeeCCCCCC------CcccCCCCCCHHHHHHHHHHH
Confidence 999999999999984 78899999999988652 3578899988643221 123689999999999999988
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
++ . ++++.|+|+|+||++.+.+.+.++++++.++++.+++.+..+++||+||||+++|.. ..++++++++.+++.
T Consensus 149 ~~-~-~~~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~GGG~~~~y~~---~~~~~~~~~~~i~~~ 223 (362)
T cd00622 149 KE-L-GLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDG---VVPSFEEIAAVINRA 223 (362)
T ss_pred HH-c-CCEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCEEEeCCCcCcccCC---CCCCHHHHHHHHHHH
Confidence 77 4 799999999999999899999999999999999998888999999999999999975 235788899999888
Q ss_pred HhcC----CcEEEEcccceeecccceEEEEEEEEEeeCc---eeEEEEcCCCCCCcChhhhhcCcc-eEEcCCCCCCCCc
Q 012098 330 VLSR----NLNLIIEPGRSLIANTCCLVNHVTGVKTNGT---KNFIVIDGSMAELIRPSLYDAYQH-IELVSPAPQDAEI 401 (471)
Q Consensus 330 ~~~~----~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~---~~~~ivD~g~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 401 (471)
+..+ .+++++||||++++++|+|+|+|+++|+..+ ++|+++|+|++.++++.+|..+++ +.++....++.+.
T Consensus 224 ~~~~~~~~~~~l~~EpGr~lv~~ag~l~t~V~~vk~~~~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (362)
T cd00622 224 LDEYFPDEGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGEL 303 (362)
T ss_pred HHHhCCcCCCeEEEeCCchhccceEEEEEEEEEEEecCCCCceEEEEEcCCeecchhhhhhccCCceeEEecCCCCCCCe
Confidence 7654 4689999999999999999999999998765 689999999988888887776654 3444322113356
Q ss_pred eEEEEEccCCCCCceeccCCCCCC-CCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 402 SKFDVVGPVCESADFLGKERELPT-PDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 402 ~~~~i~G~tC~~~D~l~~~~~lP~-~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
.+++|+||+|+++|++.+++.||+ +++||+|+|.++|||+++|+++||++++|++|++
T Consensus 304 ~~~~v~G~~C~~~D~l~~~~~lp~~l~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 362 (362)
T cd00622 304 YPSSLWGPTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVYV 362 (362)
T ss_pred eeEEEEcCCCCcccEecccCcCcccCCCCCEEEEcCCCCccccccCCCCCCCCCeeEeC
Confidence 789999999999999999999998 9999999999999999999999999999999975
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=3.9e-59 Score=497.73 Aligned_cols=394 Identities=22% Similarity=0.291 Sum_probs=326.0
Q ss_pred Cccc-cceeeccCCeEEEc-------CcCHHHHHHh-----cCCCcEEEEeHHHHHHHHHHHHHHhcCC--------Cce
Q 012098 61 APVE-HCFSKKADGFLYCE-------DVRVQDVMET-----VEKRPFYLYSKPQITRNVEAYKQALEGL--------NSI 119 (471)
Q Consensus 61 ~~~~-~~~~~~~~g~l~~~-------~i~l~~l~~~-----~~~tP~~v~d~~~l~~n~~~~~~a~~~~--------~~~ 119 (471)
..|. +||+++++|++.|. .++|.+|+++ + +||+||++++.|++|+++++++|+.. +++
T Consensus 21 ~~Wg~~yf~i~~~G~~~v~p~~~~~~~i~L~~l~~~~~~~~~-gtPlyV~~~~~L~~ri~~L~~aF~~a~~~~~y~g~~~ 99 (634)
T PRK05354 21 DHWGAGYFDINDKGHVSVRPDGDPGASIDLAELVKELRERGL-RLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYR 99 (634)
T ss_pred CccCCCcccCCCCCCEEEecCCCCCCCcCHHHHHHHhhccCC-CCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCce
Confidence 4574 99999999999996 6999999998 5 89999999999999999999999743 467
Q ss_pred EEEecccCCcHHHHHHHHHcC----CceEEcCHHHHHHHHHCCCCCCc-EEEeCCCCcHHHHHHHHhC-----CCEEEeC
Q 012098 120 IGYAIKANNNYKILEHLRKLG----CGAVLVSGNELRLALRAGFDPTK-CIFNGNGKLLEDLVLAAQE-----GVFVNVD 189 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~~~G~~~~~-Ii~~g~~k~~~~l~~a~~~-----gv~i~vD 189 (471)
++||+|||+++.|++.+.+.| +|+||+|++|+.+|+++|+++++ |+++| .|+.++|+.|+.. ++.++||
T Consensus 100 ~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~~~~~lIi~NG-~Kd~e~I~~Al~~~~lG~~v~ivID 178 (634)
T PRK05354 100 GVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIVCNG-YKDREYIRLALIGRKLGHKVFIVIE 178 (634)
T ss_pred EEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCCCCCcEEEcCC-CCCHHHHHHHHHhHhcCCCEEEEEC
Confidence 999999999999999999999 89999999999999999999888 67777 5999999998632 4679999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCc-eEEEEEeecCCC
Q 012098 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL-KLVGAHCHLGST 268 (471)
Q Consensus 190 s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l-~l~Glh~H~Gs~ 268 (471)
|++||+.|.+.+++.+++++|+||+++.... .+.|..||+..+|||++.+|+.++++.+++.+ .+ ++.|||||+|||
T Consensus 179 s~~EL~~I~~~a~~~~~~p~IglRi~~~~~~-~g~~~~tgG~~SKFGl~~~ei~~~i~~lk~~~-~l~~L~GLHfHiGSQ 256 (634)
T PRK05354 179 KLSELELILEEAKELGVKPRLGVRARLASQG-SGKWQSSGGEKSKFGLSATEVLEAVERLREAG-LLDCLQLLHFHLGSQ 256 (634)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-CCCcccCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCceEEEEEeCCCC
Confidence 9999999999999999999999999997644 56789999999999999999999999999886 45 699999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCC-----CCHHHHHH----HHHHHHhcCC---cE
Q 012098 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL-----PKPRNLID----TVRELVLSRN---LN 336 (471)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~-----~~~~~~~~----~i~~~~~~~~---~~ 336 (471)
+.+++.++++++++.+++.++++.|+++++||+|||||++|.+++... .+++++++ .+++.|.+.+ ++
T Consensus 257 i~d~~~~~~al~e~~~~~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~~~~s~nydl~eya~~Iv~~l~~~~~~~~v~~p~ 336 (634)
T PRK05354 257 IANIRDIKTAVREAARFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQEYANDVVYTLKEICEEHGVPHPT 336 (634)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCcCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 999999999999999999999999999999999999999998665431 35666554 5566665544 58
Q ss_pred EEEcccceeecccceEEEEEEEEEeeCce---------------------------------------------------
Q 012098 337 LIIEPGRSLIANTCCLVNHVTGVKTNGTK--------------------------------------------------- 365 (471)
Q Consensus 337 l~~EpGR~lva~ag~lvt~V~~vk~~~~~--------------------------------------------------- 365 (471)
|++|||||+||+|++||++|+++|...+.
T Consensus 337 Ii~EpGRalVA~agvLvt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~ 416 (634)
T PRK05354 337 IISESGRALTAHHAVLVFNVLGVESQEYEEPPAPAEDAPPLLQNLWETYQEISERNLQEIYHDAQQDLEEALTLFALGYL 416 (634)
T ss_pred EEECCCchhhhcceEEEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999974211
Q ss_pred -----------------------------------------eEEEEcCCCCCCcChhhhhc--CcceEEcCCCCCCCCce
Q 012098 366 -----------------------------------------NFIVIDGSMAELIRPSLYDA--YQHIELVSPAPQDAEIS 402 (471)
Q Consensus 366 -----------------------------------------~~~ivD~g~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~ 402 (471)
.++.+|.|.-..+ |..|.. .+++.++.+- ...|.+
T Consensus 417 ~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~Fqsl-PD~Wai~Q~Fpi~Pi~rl-~e~p~~ 494 (634)
T PRK05354 417 SLQERAWAEQLYWAICRKIQKLLDPKNRHPPELDELQERLADKYYVNFSLFQSL-PDAWAIDQLFPIMPLHRL-DEEPTR 494 (634)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHhhhheEEeeehhccc-cchhhhCCccceeecccc-CCCcce
Confidence 0333343332222 112222 2233333222 235788
Q ss_pred EEEEEccCCCCCceecc---------CCCCCCCCCCC--EEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 403 KFDVVGPVCESADFLGK---------ERELPTPDRGA--GLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 403 ~~~i~G~tC~~~D~l~~---------~~~lP~~~~GD--~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
.+.|++-||||.+.+-. .++||+++.|. +|.|+.+|||+-.++..||+|..|.+|-|.
T Consensus 495 ~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~ 563 (634)
T PRK05354 495 RAVLADITCDSDGKIDQFIDGQGIKTTLPLHELDPGEPYYLGFFLVGAYQEILGDMHNLFGDTNAVHVR 563 (634)
T ss_pred eeEEecccccCCCchhcccCCcCCcCceeCCccCCCCccEEEEEecchhhHhhccccccCCCCCEEEEE
Confidence 99999999999996643 24677887777 899999999999999999999988887774
No 22
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=2.5e-56 Score=476.10 Aligned_cols=395 Identities=21% Similarity=0.277 Sum_probs=319.1
Q ss_pred Cccc-cceeeccCCeEEEc--------CcCHHHHHHhc----CCCcEEEEeHHHHHHHHHHHHHHhcCC--------Cce
Q 012098 61 APVE-HCFSKKADGFLYCE--------DVRVQDVMETV----EKRPFYLYSKPQITRNVEAYKQALEGL--------NSI 119 (471)
Q Consensus 61 ~~~~-~~~~~~~~g~l~~~--------~i~l~~l~~~~----~~tP~~v~d~~~l~~n~~~~~~a~~~~--------~~~ 119 (471)
..|. +||+++++|+++|. .++|.+|++++ .++|+||+|++.|++|+++++++|+.. +++
T Consensus 13 ~~Wg~~yf~i~~~G~~~v~p~~~~~~~~i~l~~~v~~~~~~g~~tPl~V~d~~iL~~~i~~l~~aF~~a~~~~~Y~g~~~ 92 (624)
T TIGR01273 13 KGWGAGYFAINKDGNVCVRPGGRDTLQSIDLLELVDQVRARGLQLPLLVRFPDILQHRIRSLNDAFANAIEEYQYAGHYQ 92 (624)
T ss_pred CCcCCccccCCCCeeEEEeeCCCCCCCCcCHHHHHHHHHhcCCCCCEEEEcHHHHHHHHHHHHHHHHHHHHhhccCCCee
Confidence 4474 99999999999984 49999999885 479999999999999999999999742 468
Q ss_pred EEEecccCCcHHHHHHHHHcC----CceEEcCHHHHHHHHHCCCC-CCcEEEeCCCCcHHHHHHHHh---C--CCEEEeC
Q 012098 120 IGYAIKANNNYKILEHLRKLG----CGAVLVSGNELRLALRAGFD-PTKCIFNGNGKLLEDLVLAAQ---E--GVFVNVD 189 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~~~G~~-~~~Ii~~g~~k~~~~l~~a~~---~--gv~i~vD 189 (471)
++||+|||+++.|++.+.+.| +|+||+|++|+.+|+++|++ +..|+|+|+ |+.++|+.|+. . ++.++||
T Consensus 93 ~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~~p~~~Ii~NG~-K~~e~I~~Al~~~~lG~~v~IvID 171 (624)
T TIGR01273 93 GVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPIVCNGY-KDREYIELALIGRKLGHNVFIVIE 171 (624)
T ss_pred EEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCCCCCCEEEeCCC-CCHHHHHHHHHhhhcCCCeEEEEC
Confidence 999999999999999999999 89999999999999999985 457899995 99999998864 3 5678999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCc-eEEEEEeecCCC
Q 012098 190 SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL-KLVGAHCHLGST 268 (471)
Q Consensus 190 s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l-~l~Glh~H~Gs~ 268 (471)
|++||+.|.+.+++.+++++|+||+|+.. .+.+.|..||+..+|||++.+++.++++.+++.+ .+ ++.|||||+|||
T Consensus 172 s~~EL~~I~~~a~~~~~~~~IglRvnl~~-~~~g~~~~tgg~~SKFGl~~~ei~~~i~~lk~~~-~l~~L~GLHfHiGSQ 249 (624)
T TIGR01273 172 KLSELDLVIEEAKKLGVKPKLGLRARLAS-KGSGKWASSGGEKSKFGLSATQILEVVRLLEQNG-LLDCLKLLHFHIGSQ 249 (624)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEEecCC-CCCCCcccCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCceEEEEEeCCCC
Confidence 99999999999999999999999999874 4556788999999999999999999999999886 34 599999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC-----CCCHHHHHHHH----HHHHhcCC---cE
Q 012098 269 ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-----LPKPRNLIDTV----RELVLSRN---LN 336 (471)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~-----~~~~~~~~~~i----~~~~~~~~---~~ 336 (471)
+.+++.++++++++.+++.++++.|+++++||+|||||++|.++... ..+++++++.| ++.|.+.+ ++
T Consensus 250 i~d~~~~~~ai~~~~~i~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~~~~s~~y~leeya~~Iv~~l~~~~~~~~~~~p~ 329 (624)
T TIGR01273 250 ISNIDDVKKGVREAARFYCELRKLGAKITYVDVGGGLGVDYDGTSSSSDCSVNYGLEEYAADVVQALREICDEKGVPHPV 329 (624)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99999999999999999999999999999999999999999854321 23566665554 55565444 48
Q ss_pred EEEcccceeecccceEEEEEEEEEeeCce---------------------------------------------------
Q 012098 337 LIIEPGRSLIANTCCLVNHVTGVKTNGTK--------------------------------------------------- 365 (471)
Q Consensus 337 l~~EpGR~lva~ag~lvt~V~~vk~~~~~--------------------------------------------------- 365 (471)
|++|||||+||+|++||++|+++|...+.
T Consensus 330 Ii~EpGR~lvA~agvLVt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~G~l 409 (624)
T TIGR01273 330 IITESGRAITAHHAVLITNVLGVERHEYDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEILHDAQHLKEEAVEGFKLGYL 409 (624)
T ss_pred EEEcCCCchhccceEEEEEEEEEeccCCCCCCCCcccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999973211
Q ss_pred -----------------------------------------eEEEEcCCCCCCcChhhhhcC--cceEEcCCCCCCCCce
Q 012098 366 -----------------------------------------NFIVIDGSMAELIRPSLYDAY--QHIELVSPAPQDAEIS 402 (471)
Q Consensus 366 -----------------------------------------~~~ivD~g~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 402 (471)
.++.+|-|....+ |..|... +++.++.+- .+.|.+
T Consensus 410 ~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~fqsl-PD~Wai~Q~Fpi~Pl~rl-~e~p~~ 487 (624)
T TIGR01273 410 DLEQRAWAEQLYLSICRKVHQLSAKNKDHRPILDELQERLADKYFVNFSVFQSL-PDAWGIDQLFPIMPLSRL-DEKPTR 487 (624)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHhhhhheEEehhhhccc-cchhhhCCccceecCCCC-CCCccc
Confidence 0222222221111 1112211 222222222 245788
Q ss_pred EEEEEccCCCCCceecc-----C----CCCCCCCC--CCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 403 KFDVVGPVCESADFLGK-----E----RELPTPDR--GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 403 ~~~i~G~tC~~~D~l~~-----~----~~lP~~~~--GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
.+.|++-||||.+.+-. + ++||.++. .-+|.|+.+|||+-.++.-||++..|.+|-|.
T Consensus 488 ~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~FlvGAYQe~lg~~HNLfg~~~~v~v~ 556 (624)
T TIGR01273 488 RAVLQDITCDSDGKIDQFIGEQGITSTLPLHELDPDEGYFLGFFLVGAYQEILGDMHNLFGDTSAVRVV 556 (624)
T ss_pred eEEEeccCCCCCCchhccCCCcCccCCccCCCcCCCCCcEEEEEeccHhHHHhccccccCCCCCEEEEE
Confidence 99999999999995432 1 35556544 45799999999999999999999999887773
No 23
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=1.5e-50 Score=426.86 Aligned_cols=362 Identities=20% Similarity=0.246 Sum_probs=290.0
Q ss_pred EEEeHHHHHHHHHHHHHHhcCC--------CceEEEecccCCcHHHHHHHHHcC----CceEEcCHHHHHHHHHCC--CC
Q 012098 95 YLYSKPQITRNVEAYKQALEGL--------NSIIGYAIKANNNYKILEHLRKLG----CGAVLVSGNELRLALRAG--FD 160 (471)
Q Consensus 95 ~v~d~~~l~~n~~~~~~a~~~~--------~~~i~yavKaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~~~G--~~ 160 (471)
.+...+.|++|+++++++|+.. +++++||+|||+++.|++.+.+.| +|+||+|++|+.+|+++| .+
T Consensus 2 l~rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~~ 81 (559)
T PLN02439 2 IVRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGS 81 (559)
T ss_pred EeeCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCCC
Confidence 4567889999999999999642 468999999999999999999988 699999999999999987 55
Q ss_pred CCcEEEeCCCCcHHHHHHHHh---CCC--EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCC
Q 012098 161 PTKCIFNGNGKLLEDLVLAAQ---EGV--FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235 (471)
Q Consensus 161 ~~~Ii~~g~~k~~~~l~~a~~---~gv--~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKf 235 (471)
+++++++++.|+.++++.|+. .|+ .+++||++||+.|.+.+++.+++++|+||++++.. +.+.|..||+..+||
T Consensus 82 ~~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~-~~~~~~~tgg~~sKF 160 (559)
T PLN02439 82 PDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTK-HSGHFGSTSGEKGKF 160 (559)
T ss_pred CCeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCC-CCCCccccCCCCCCC
Confidence 667765444599999998753 344 68999999999999999999988999999999875 556789999999999
Q ss_pred CCCHhHHHHHHHHHHcCCCCce-EEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELK-LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~-l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
|++.+++.++++.+++.+ .+. ++|||||+|||+.+++.++++++++.++++++++.|+++++||+|||||++|.+++.
T Consensus 161 Gl~~~ei~~~i~~lk~~~-~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G~~l~~lDIGGGlgV~Y~g~~~ 239 (559)
T PLN02439 161 GLTATEIVRVVRKLRKEG-MLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKS 239 (559)
T ss_pred CCCHHHHHHHHHHHHhCC-CCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEEecCCccccCCCccc
Confidence 999999999999999886 565 999999999999999999999999999999999999999999999999999976532
Q ss_pred ------CCCCHHHHHHH----HHHHHhcCC---cEEEEcccceeecccceEEEEEEEEEee-------C-----------
Q 012098 315 ------VLPKPRNLIDT----VRELVLSRN---LNLIIEPGRSLIANTCCLVNHVTGVKTN-------G----------- 363 (471)
Q Consensus 315 ------~~~~~~~~~~~----i~~~~~~~~---~~l~~EpGR~lva~ag~lvt~V~~vk~~-------~----------- 363 (471)
...+++++++. +++.|...+ ++|++||||++||+||+||++|+++|.. .
T Consensus 240 ~~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~~~ 319 (559)
T PLN02439 240 GSSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLTEE 319 (559)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHHHH
Confidence 12356665554 455555444 4899999999999999999999999830 0
Q ss_pred ---------------------------------------------------------------ceeEEEEcCCCCCCcCh
Q 012098 364 ---------------------------------------------------------------TKNFIVIDGSMAELIRP 380 (471)
Q Consensus 364 ---------------------------------------------------------------~~~~~ivD~g~~~~~~~ 380 (471)
...|+.+|.|.-..+ |
T Consensus 320 ~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqsl-P 398 (559)
T PLN02439 320 LRADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSI-P 398 (559)
T ss_pred HHhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhccC-c
Confidence 011555565543322 2
Q ss_pred hhhhcCc--ceEEcCCCCCCCCceEEEEEccCCCCCceeccC------CCCCCCCC----CCEEEEcCCCccccccCCCC
Q 012098 381 SLYDAYQ--HIELVSPAPQDAEISKFDVVGPVCESADFLGKE------RELPTPDR----GAGLVVHDAGAYCMSMASTY 448 (471)
Q Consensus 381 ~l~~~~~--~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~------~~lP~~~~----GD~l~~~~~GAY~~~~~~~f 448 (471)
..|...+ ++.++.+. .+.|.+.+.|++-||||.+.+-.- .+|++++. .-+|.|+.+|||+-.++..|
T Consensus 399 D~Wai~Q~Fpi~Pl~rl-~e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~~~e~y~lg~Fl~GAYQe~lg~~H 477 (559)
T PLN02439 399 DFWAIGQLFPIVPLHRL-DERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKNGGGPYYLGMFLGGAYQEALGSLH 477 (559)
T ss_pred cceeeCceeeeeecccc-CCCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCCCCCCCEEEEEeccHhHHHhcccc
Confidence 2233222 33333222 234788999999999999986532 23445434 34578999999999999999
Q ss_pred CCCCCCcEEEEE
Q 012098 449 NLKMRPPEYWVR 460 (471)
Q Consensus 449 n~~~~p~~v~v~ 460 (471)
|+++.|.+|-|.
T Consensus 478 nLfg~~~~v~v~ 489 (559)
T PLN02439 478 NLFGGPSVVRVS 489 (559)
T ss_pred ccCCCCCEEEEE
Confidence 999999998886
No 24
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-45 Score=366.36 Aligned_cols=300 Identities=21% Similarity=0.332 Sum_probs=262.5
Q ss_pred Ccc-ccceeeccCCeEEEc-------CcCHHHHHHhc----CCCcEEEEeHHHHHHHHHHHHHHhcC----C----CceE
Q 012098 61 APV-EHCFSKKADGFLYCE-------DVRVQDVMETV----EKRPFYLYSKPQITRNVEAYKQALEG----L----NSII 120 (471)
Q Consensus 61 ~~~-~~~~~~~~~g~l~~~-------~i~l~~l~~~~----~~tP~~v~d~~~l~~n~~~~~~a~~~----~----~~~i 120 (471)
..| ++||.+++.|+++|. .++|.+|+++. .+-|+++...+.|.++++.+.++|.. + ++..
T Consensus 37 ~~Wg~~yF~In~~G~v~V~P~~~~~~~~dL~elV~~l~~~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~ 116 (652)
T COG1166 37 NHWGNGYFDINDAGHVTVCPDPDPGARVDLAELVKALRDRGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFA 116 (652)
T ss_pred ccccCcceeecCCccEEEecCCCccccccHHHHHHHHHhcCCCCceEEechHHHHHHHHHHHHHHHHHHHHhCCCCceeE
Confidence 456 799999998999995 47899999875 35799999999999999988888752 2 4689
Q ss_pred EEecccCCcHHHHHHHHHcC----CceEEcCHHHHHHHHHC-CCCCCcEEEeCCCCcHHHHHHHH---hCC--CEEEeCC
Q 012098 121 GYAIKANNNYKILEHLRKLG----CGAVLVSGNELRLALRA-GFDPTKCIFNGNGKLLEDLVLAA---QEG--VFVNVDS 190 (471)
Q Consensus 121 ~yavKaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~~~-G~~~~~Ii~~g~~k~~~~l~~a~---~~g--v~i~vDs 190 (471)
.|++|+|+.+.|++.|++.| .|+|++|++|+.++++. |-+..-|+|||. |+++.|++|+ +.| +.++|+.
T Consensus 117 VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~IvCNGy-KDrEyI~lAlig~kLGh~v~ivIEk 195 (652)
T COG1166 117 VYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSLIVCNGY-KDREYIRLALIGEKLGHKVYIVIEK 195 (652)
T ss_pred EEEeeecchHHHHHHHHhccCCCCCcccCCCHHHHHHHHHhcCCCCCeEEecCc-ccHHHHHHHHHHHHhCCceEEEEec
Confidence 99999999999999999985 49999999999999985 466677899887 9999999885 334 7899999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCC
Q 012098 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT 270 (471)
Q Consensus 191 ~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~ 270 (471)
++|++.+.+.|++.|.+++++||++... .+.+.|.++||+.+|||++..|+.++++++++....-.+..+|||+|||+.
T Consensus 196 lsEl~~VleeA~~lgvkP~lGvR~RL~s-qGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQis 274 (652)
T COG1166 196 LSELDLVLEEAKQLGVKPRLGVRARLAS-QGSGKWQSSGGEKSKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQIS 274 (652)
T ss_pred hHHHHHHHHHHHHcCCCCcceeEEEEec-ccccccccccCchhccCCCHHHHHHHHHHHHhcchHHhhHHHhhhhcchhh
Confidence 9999999999999999999999999863 456789999999999999999999999999987633358889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCC---------CHHHHHHHHHHHHhcCC---cEEE
Q 012098 271 KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP---------KPRNLIDTVRELVLSRN---LNLI 338 (471)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~---------~~~~~~~~i~~~~~~~~---~~l~ 338 (471)
++..++++++++.+++.+|++.|.+++++|+|||+|++|+++.+..+ .+.+++..+++.|..++ +.|+
T Consensus 275 nI~~ik~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~Ii 354 (652)
T COG1166 275 NIRDIKTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTII 354 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCCceEEeccCceeecccCccccccccccCCHHHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 99999999999999999999999999999999999999987766543 14566778899998766 4899
Q ss_pred EcccceeecccceEEEEEEEEEee
Q 012098 339 IEPGRSLIANTCCLVNHVTGVKTN 362 (471)
Q Consensus 339 ~EpGR~lva~ag~lvt~V~~vk~~ 362 (471)
.|+||+++|++.+|++.|+++...
T Consensus 355 sESGRaitAHhaVLI~~Vi~v~~~ 378 (652)
T COG1166 355 SESGRAITAHHAVLIANVIGVERH 378 (652)
T ss_pred eecchhhhhcceEEEeeecccccC
Confidence 999999999999999999998763
No 25
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=1.2e-44 Score=351.67 Aligned_cols=241 Identities=39% Similarity=0.602 Sum_probs=204.9
Q ss_pred eHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHH
Q 012098 98 SKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV 177 (471)
Q Consensus 98 d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~ 177 (471)
|++.+.++++.+.+++...+++++||+|||+++.|++++.+.|+|+||+|.+|++.|+++|+++++|+|+||+|+.++|+
T Consensus 1 d~~~~~~~~~~~~~~~~~~~~~i~yA~KaN~~~~vl~~l~~~g~g~dv~S~~El~~a~~~g~~~~~Ii~~gp~k~~~~l~ 80 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLPYNVKIFYAVKANPNPAVLKILAEEGCGFDVASPGELELALKAGFPPDRIIFTGPGKSDEELE 80 (251)
T ss_dssp EHHHHHHHHHHHHHHHTTT-EEEEEEGGGS--HHHHHHHHHTTCEEEESSHHHHHHHHHTTTTGGGEEEECSS--HHHHH
T ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEEECcCCCHHHHHHHHHcCCceEEecccchHHHHhhhccccceeEecCcccHHHHH
Confidence 67878888777666665436899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH-HHHHHHHHHcCCCC
Q 012098 178 LAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAHPNE 255 (471)
Q Consensus 178 ~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e-l~~~l~~l~~~~~~ 255 (471)
.|++.|+ .+++||++|+++|.+.+++. +|+|||||+.....+..++||+..||||++.++ +.++++.+++. +
T Consensus 81 ~a~~~~~~~i~vDs~~el~~l~~~~~~~----~v~lRin~~~~~~~~~~~~~g~~~skFGi~~~~~~~~~l~~~~~~--~ 154 (251)
T PF02784_consen 81 EAIENGVATINVDSLEELERLAELAPEA----RVGLRINPGIGAGSHPKISTGGKDSKFGIDIEEEAEEALERAKEL--G 154 (251)
T ss_dssp HHHHHTESEEEESSHHHHHHHHHHHCTH----EEEEEBE-SESTTTSCHHCSSSHTSSSSBEGGGHHHHHHHHHHHT--T
T ss_pred HHHhCCceEEEeCCHHHHHHHhccCCCc----eeeEEEeeccccccccccCCCCCCCcCCcChHHHHHHHHHhhccc--e
Confidence 9999664 79999999999999987543 999999999777888888999899999999999 99999999987 5
Q ss_pred ceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCC-CCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHh--
Q 012098 256 LKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFE-VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL-- 331 (471)
Q Consensus 256 l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~~-l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~-- 331 (471)
+++.|+|||+|||+.+.+.|.++++.+.+++.+++ +.|++ +++||+||||+++|.. .++++++.+.+++.++
T Consensus 155 l~l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG~~~~y~~----~~~~~~~~~~i~~~~~~~ 230 (251)
T PF02784_consen 155 LRLVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGGFGVPYDD----EYDLEEYAEVIREALKEY 230 (251)
T ss_dssp EEEEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESSB-SSSSS----SSCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccccEEEeeCCCCCCCcc----cccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 67988 9999999999999974 2356666665555443
Q ss_pred --c--CCcEEEEcccceeecc
Q 012098 332 --S--RNLNLIIEPGRSLIAN 348 (471)
Q Consensus 332 --~--~~~~l~~EpGR~lva~ 348 (471)
. .+++|++|||||+||+
T Consensus 231 ~~~~~~~~~l~~EpGR~lva~ 251 (251)
T PF02784_consen 231 FEEGLPGPKLIIEPGRYLVAN 251 (251)
T ss_dssp HCHTCTTSEEEEEESHHHHGG
T ss_pred HhccCCCCEEEEeeCHHHhCC
Confidence 2 4689999999999985
No 26
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=100.00 E-value=1.6e-34 Score=295.92 Aligned_cols=314 Identities=19% Similarity=0.196 Sum_probs=241.5
Q ss_pred EEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeC
Q 012098 94 FYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNG 168 (471)
Q Consensus 94 ~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g 168 (471)
..++|+++|++|++.+++.++. +.+++|++|+|++ +.|++.+.++|+ +|+|+|.+|+..++++|++++.+++.+
T Consensus 3 ~l~Id~~~i~~N~~~l~~~~~~-~~~l~~vvKan~yGhg~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~g~~~~i~~~~~ 81 (367)
T cd00430 3 WAEIDLDALRHNLRVIRRLLGP-GTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC-CCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeC
Confidence 4689999999999999999875 5689999999984 899999999997 899999999999999999865555655
Q ss_pred CCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 169 NGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 169 ~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+ . .++++.++++++.+++||+++++.|.+.+++.+++++|+||||++ ++|||++++|+.++++.
T Consensus 82 ~-~-~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdtG--------------~~R~G~~~~e~~~~~~~ 145 (367)
T cd00430 82 T-P-PEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKIDTG--------------MGRLGFRPEEAEELLEA 145 (367)
T ss_pred C-C-HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEcCC--------------CCCCCCCHHHHHHHHHH
Confidence 4 3 688999999999999999999999999988888889999999853 79999999999999999
Q ss_pred HHcCCCCceEEEEEeecCCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITK-VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVR 327 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~-~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~ 327 (471)
+++++ ++++.|+|+|+|++..+ .+...++++.+.++.+.+++.|+++.++++||+.++.|... .. .+.+|
T Consensus 146 i~~~~-~l~~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~v~~g~s~~~~~~~~-~~-------~d~vR 216 (367)
T cd00430 146 LKALP-GLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPE-AH-------FDMVR 216 (367)
T ss_pred HHhCC-CceEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCcEEccCCHHHhCCcc-cc-------CCeEe
Confidence 98887 89999999999998765 45677788888888888888888899999999999877531 11 12233
Q ss_pred HHHhcCCcEEEEc-ccceeecccceEEEEEEEEEe-------eCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCC-
Q 012098 328 ELVLSRNLNLIIE-PGRSLIANTCCLVNHVTGVKT-------NGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQD- 398 (471)
Q Consensus 328 ~~~~~~~~~l~~E-pGR~lva~ag~lvt~V~~vk~-------~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~- 398 (471)
....-+|..-..+ +......++++++++|+++|. ..+..|. .++++.....|.-|...++..+ .+...-
T Consensus 217 ~G~~lyG~~~~~~~~~~~~l~~a~~l~a~Vi~vk~~~~G~~vgyg~~~~-~~~~~~~a~~~~Gy~dg~~~~~-~~~~~v~ 294 (367)
T cd00430 217 PGIALYGLYPSPEVKSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYT-APRPTRIATLPVGYADGYPRAL-SNKGEVL 294 (367)
T ss_pred eCeEEECcCCCcccccccCCceeeEEEEEEEEEEEcCCCCcCCCCCeEE-cCCCcEEEEEeeccccCcCccc-CCCcEEE
Confidence 3222222211111 123457799999999999998 3344553 5555554444444433222111 110000
Q ss_pred CCceEEEEEccCCCCCceeccCC-CCCCCCCCCEEEEcCC
Q 012098 399 AEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDA 437 (471)
Q Consensus 399 ~~~~~~~i~G~tC~~~D~l~~~~-~lP~~~~GD~l~~~~~ 437 (471)
-..+.++|+|++|| |+++.|+ .+|++++||.|.|.+-
T Consensus 295 i~~~~~~ivG~v~m--D~~~vdv~~~~~~~~GD~v~l~g~ 332 (367)
T cd00430 295 IRGKRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGR 332 (367)
T ss_pred ECCEEcceeceeec--cEEEEECCCCCCCCCCCEEEEEcC
Confidence 03568899999997 9999998 6788999999999876
No 27
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=100.00 E-value=1.4e-30 Score=266.59 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=237.1
Q ss_pred EEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 95 YLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 95 ~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
+++|+++|++|++.+++.++. +.+++|++|||++ +.+++.+.+.|+ +|+|+|.+|+..++++|++++.+++.++
T Consensus 5 ~~Idl~~l~~N~~~i~~~~~~-~~~i~~vvKAnaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~lr~~G~~~~ilvl~~~ 83 (367)
T TIGR00492 5 VEIDLAALKHNLSAIRNHIGP-KSKIMAVVKANAYGHGLIEVAKTLLQAGADYFGVANLEEAITLRKAGITAPILLLGGF 83 (367)
T ss_pred EEEEHHHHHHHHHHHHHhcCC-CCEEEEEEEcCCccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCCCEEEEeCC
Confidence 579999999999999998875 4579999999985 899999999996 9999999999999999998765666444
Q ss_pred CCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 170 GKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
. +++++.++++++.++|||+++++.|.+.+++.+++++|+||||++ ++|||++++|+.++++.+
T Consensus 84 -~-~~~~~~~~~~~l~~~v~s~~~l~~l~~~a~~~~~~~~V~l~VdtG--------------m~R~Gi~~~e~~~~~~~i 147 (367)
T TIGR00492 84 -F-AEDLKILAAWDLTTTVHSVEQLQALEEALLKEPKRLKVHLKIDTG--------------MNRLGVKPDEAALFVQKL 147 (367)
T ss_pred -C-HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEeeCC--------------CCCCCCChHHHHHHHHHH
Confidence 3 788999999999999999999999999998888889999999854 799999999988888888
Q ss_pred HcCCCCce-EEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHH
Q 012098 250 KAHPNELK-LVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVR 327 (471)
Q Consensus 250 ~~~~~~l~-l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~ 327 (471)
..++ +++ +.|+|+|++++.. +.+.++++++++.++.+.+++.|.++.++++|+.-++.... +. -.+.+|
T Consensus 148 ~~~~-~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nS~~~~~~~-~~-------~~d~vR 218 (367)
T TIGR00492 148 RQLK-KFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEPPFRHIANSAAILNWP-ES-------HFDMVR 218 (367)
T ss_pred HhCC-CCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCcEEccCCHHHhCCc-cc-------cCCeEc
Confidence 8877 899 9999999998753 32467788888888888888778888899887554432211 10 012234
Q ss_pred HHHhcCCcEEEE--ccc-ceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcce
Q 012098 328 ELVLSRNLNLII--EPG-RSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQHI 389 (471)
Q Consensus 328 ~~~~~~~~~l~~--EpG-R~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~~ 389 (471)
....-+|..-.. +.+ ..-..++..+.++|+.+|+.. +..+++++.||.|.+...+.+.. +
T Consensus 219 ~G~~lyG~~~~~~~~~~~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~~GYaDG~~r~~s~~~-~- 296 (367)
T TIGR00492 219 PGIILYGLYPSADMSDGAPFGLKPVLSLTSKIIQVRTVKKGEPVSYGGTFTAEEDTRIGVVAIGYADGYPRALSNGT-P- 296 (367)
T ss_pred cCeEEECCCcCcccccccCCCCeeeEEEEEEEEEEEEcCCcCCcCCCCcEEcCCCcEEEEEeeecccCcCcccCCCc-E-
Confidence 333223321100 000 124789999999999998742 13567899999998765554432 1
Q ss_pred EEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 390 ELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 390 ~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
.++ ..+.+.|+|+.|| |+++.|+. .|++++||.++|.+.
T Consensus 297 v~i-------~g~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 336 (367)
T TIGR00492 297 VLV-------NGKRVPIVGRVCM--DMIMVDLGPDLQDKTGDEVILWGE 336 (367)
T ss_pred EEE-------CCEEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 122 2557899999999 99998884 678899999999864
No 28
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.98 E-value=1.6e-30 Score=245.50 Aligned_cols=195 Identities=34% Similarity=0.466 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHh
Q 012098 102 ITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQ 181 (471)
Q Consensus 102 l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~ 181 (471)
|++|++.+++.++. +++++|++|+|+++.+++++.+.+.+|+|+|..|+..++++|+++.+|+|.||.+++++++.+++
T Consensus 1 l~~N~~~i~~~~~~-~~~i~~~vKan~~~~i~~~~~~~~~~~~v~s~~E~~~~~~~g~~~~~I~~~~~~~~~~~l~~~~~ 79 (211)
T cd06808 1 IRHNYRRLREAAPA-GITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAE 79 (211)
T ss_pred ChHHHHHHHHhCCC-CCEEEEEEecCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcCCCHHHEEEcCCCCCHHHHHHHHH
Confidence 57999999999985 56899999999999999999999889999999999999999998889999999998999999999
Q ss_pred C-CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEE
Q 012098 182 E-GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVG 260 (471)
Q Consensus 182 ~-gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~G 260 (471)
. ++.+++||.++++.|.+.+++.+++++|+|||+++. .++|||++++++.++++.+++.+ ++++.|
T Consensus 80 ~~~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g~------------~~~R~G~~~~e~~~~~~~i~~~~-~l~l~G 146 (211)
T cd06808 80 QGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD------------ENGKFGVRPEELKALLERAKELP-HLRLVG 146 (211)
T ss_pred cCCCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCCC------------CCCCCCCCHHHHHHHHHHHHhCC-CCcEEE
Confidence 9 567999999999999999988888999999998642 38999999999999999998887 899999
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCC
Q 012098 261 AHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310 (471)
Q Consensus 261 lh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~ 310 (471)
+|+|+|++..+.+.+.++++++.++++++++.|+++.+||+|||+++.|.
T Consensus 147 l~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Ggg~~~~~~ 196 (211)
T cd06808 147 LHTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYL 196 (211)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCcCcC
Confidence 99999998877778888999999999999888999999999999999886
No 29
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.97 E-value=1.1e-29 Score=259.46 Aligned_cols=260 Identities=18% Similarity=0.237 Sum_probs=205.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe--
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFN-- 167 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~-- 167 (471)
+||++++|+++|++|++.|++.++..+.+++|++|+|+++.+++.+.+.|+ +|+|+|.+|++.++++|++ .|.+.
T Consensus 6 ~tP~~~id~~~l~~N~~~l~~~~~~~~~~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~ili~~~ 83 (358)
T cd06819 6 DTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGIR--DILITNE 83 (358)
T ss_pred CCceEEEEHHHHHHHHHHHHHHHHHcCCcccccchhhcCHHHHHHHHhCCCCcEEEccHHHHHHHHHCCCC--eEEEECC
Confidence 799999999999999999999998656679999999999999999999997 9999999999999999995 46666
Q ss_pred --CCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC-HhHHHH
Q 012098 168 --GNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244 (471)
Q Consensus 168 --g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~-~~el~~ 244 (471)
++.+..+.++.+.+.++.+++||.++++.|.+.+++.+++++|+||||++ ++|||+. .+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G--------------~~R~Gv~~~~~~~~ 149 (358)
T cd06819 84 VVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG--------------QGRCGVPPGEAALA 149 (358)
T ss_pred cCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC--------------CCcCCCCChHHHHH
Confidence 33344555666777788899999999999999998889999999999864 7899998 678999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCC------CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCC
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTI------TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPK 318 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~------~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~ 318 (471)
+++.+++.+ ++++.|+|+|.|++. .+.+.+.++++.+.++.+.+++.|.++.+++ |||+++.|..... +.
T Consensus 150 l~~~i~~~~-~l~l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs-gGgs~~~~~~~~~--~~ 225 (358)
T cd06819 150 LARTIAALP-GLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVT-GGGTGTYEFEAAS--GV 225 (358)
T ss_pred HHHHHHhCC-CceEeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEe-cCCCcChhhhccC--Cc
Confidence 999988887 899999999998754 2234556777778888888888899999997 9999987753221 10
Q ss_pred HHHHHHHHHHHHh---cCC-cEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCC
Q 012098 319 PRNLIDTVRELVL---SRN-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAEL 377 (471)
Q Consensus 319 ~~~~~~~i~~~~~---~~~-~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~ 377 (471)
.++ ++.... ... .....|||+....+|..++++|+++.+. ..+++|+|..++
T Consensus 226 ~~e----lr~G~~i~~d~~~~~~~~~~~~~~~~~A~~v~a~Vis~~~~---~~~~ld~G~~~~ 281 (358)
T cd06819 226 YTE----LQAGSYVFMDADYGDNEDEGGAPPFENALFVLTTVISANAP---GRAVVDAGLKSL 281 (358)
T ss_pred ceE----EccCceEEecHHHHhcCCccCCCccceeeEEEEEEeeeccC---CeEEECCccccc
Confidence 111 111100 000 0112379999999999999999995432 357899887654
No 30
>PRK00053 alr alanine racemase; Reviewed
Probab=99.97 E-value=1.3e-28 Score=251.71 Aligned_cols=306 Identities=18% Similarity=0.141 Sum_probs=236.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEE
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIF 166 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~ 166 (471)
.+.+++|+++|++|++.+++.++. +.+++|++|+|++ +.+++++.+.|+ +|+|+|.+|+..++++|++. .|++
T Consensus 3 ~~~l~Idl~~l~~N~~~i~~~~~~-~~~i~~vvKanaYghg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~~G~~~-~il~ 80 (363)
T PRK00053 3 PATAEIDLDALRHNLRQIRKHAPP-KSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITA-PILI 80 (363)
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCC-CCEEEEEEeeccccCcHHHHHHHHHHCCCCEEEECcHHHHHHHHhcCCCC-CEEE
Confidence 466789999999999999998874 4689999999984 799999989997 99999999999999999964 5766
Q ss_pred eCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH
Q 012098 167 NGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l 246 (471)
.++....++++.+++.++.++|||+++++.|.+. +.+++++|+||||++ ++|||++++++.+++
T Consensus 81 l~~~~~~~e~~~~~~~~i~~~v~s~~~l~~l~~~--~~~~~~~V~l~vdtG--------------~~R~Gi~~~e~~~~~ 144 (363)
T PRK00053 81 LGGFFPAEDLPLIIAYNLTTAVHSLEQLEALEKA--ELGKPLKVHLKIDTG--------------MHRLGVRPEEAEAAL 144 (363)
T ss_pred EeCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHh--ccCCCeEEEEEecCC--------------CCcCCCCHHHHHHHH
Confidence 6665677889999999999999999999999885 567789999999853 799999999999999
Q ss_pred HHHHcCCCCceEEEEEeecCCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTI-TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT 325 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~-~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~ 325 (471)
+.++.++ ++++.|+|+|+++.. .+.+...++++++.++.+.+++.|. .++++|+.-++.... +. -++.
T Consensus 145 ~~i~~~~-~l~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~--~~~h~~nS~~~~~~~-~~-------~~d~ 213 (363)
T PRK00053 145 ERLLACP-NVRLEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKGK--PLRHLANSAAILRWP-DL-------HFDW 213 (363)
T ss_pred HHHHhCC-CCceEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC--ceEeccCCHHHhCCC-cc-------cCce
Confidence 9988887 899999999999865 3444567788888888888877666 578888776654321 11 1223
Q ss_pred HHHHHhcCCcEEEE--cccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 326 VRELVLSRNLNLII--EPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 326 i~~~~~~~~~~l~~--EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
+|....-+|..-.. .....-..++..+.++|+.+|... +...++++.||.|.+.+.+.+.. +
T Consensus 214 vRpG~~lyG~~p~~~~~~~~~~l~pa~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGy~DG~~r~~s~~~-~ 292 (363)
T PRK00053 214 VRPGIALYGLSPSGEPLGLDFGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGYPRNLPSGT-P 292 (363)
T ss_pred EccCeeeeCCCCCccccccccCCeeeEEEEEEEEEEEEcCCcCccCcCCeEEcCCCcEEEEEEeccccccccccCCCC-E
Confidence 45444334432111 011134789999999999999732 23578999999988765543321 1
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
.++ ..+.+.|+|..|| |++..|+. .|++++||.+.+.+-
T Consensus 293 -v~i-------~g~~~~i~G~i~M--D~~~vdv~~~~~~~~Gd~v~l~g~ 332 (363)
T PRK00053 293 -VLV-------NGRRVPIVGRVSM--DQLTVDLGPDPQDKVGDEVTLWGE 332 (363)
T ss_pred -EEE-------CCEEceeeceeec--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 122 2557889999999 99998874 578899999988765
No 31
>PRK13340 alanine racemase; Reviewed
Probab=99.97 E-value=1.8e-28 Score=253.88 Aligned_cols=304 Identities=14% Similarity=0.142 Sum_probs=224.3
Q ss_pred cEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe
Q 012098 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFN 167 (471)
Q Consensus 93 P~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~ 167 (471)
+...+|+++|++|++.+++.++. ..+++|++|||++ ..|++.+.+.|+ +|+|+|.+|+..++++|+++..++|.
T Consensus 41 ~~l~Idl~ai~~N~~~i~~~~~~-~~~i~~vvKAnaYG~G~~~va~~l~~~G~~~~~Vas~~Ea~~lr~~G~~~~ilvl~ 119 (406)
T PRK13340 41 AWLEISPGAFRHNIKTLRSLLAN-KSKVCAVMKADAYGHGIELLMPSIIKANVPCIGIASNEEARRVRELGFTGQLLRVR 119 (406)
T ss_pred eEEEEcHHHHHHHHHHHHHhCCC-CCEEEEEEccccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhCCCCCCEEEEC
Confidence 45679999999999999999876 3589999999996 458888888997 99999999999999999998878887
Q ss_pred CCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH-
Q 012098 168 GNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL- 246 (471)
Q Consensus 168 g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l- 246 (471)
++ ++++++.++++++.++|||+++++.|.+.+++.+++++|+||||++ | ++|||+.+++..++.
T Consensus 120 ~~--~~~el~~~~~~~l~~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt~-----------G--m~R~G~~~~e~~~~~~ 184 (406)
T PRK13340 120 SA--SPAEIEQALRYDLEELIGDDEQAKLLAAIAKKNGKPIDIHLALNSG-----------G--MSRNGLDMSTARGKWE 184 (406)
T ss_pred CC--CHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEECCC-----------C--CCCcCCChhhhhHHHH
Confidence 76 6788999999999999999999999999988888889999999862 2 899999986543333
Q ss_pred -HHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCC--EEEecCCCCcCCCCCCCCCCCHHHH
Q 012098 247 -DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVD--YLNIGGGLGIDYYHTGAVLPKPRNL 322 (471)
Q Consensus 247 -~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~~l~--~ldiGGGl~i~y~~~~~~~~~~~~~ 322 (471)
..+.+.+ ++++.|+|+|+++... +...++++++.++.+.+. +.|..+. .+.+++..++.... +.-
T Consensus 185 ~~~l~~~~-~l~l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~l~~~~g~~~~~~~~h~anSa~~~~~~--------~~~ 253 (406)
T PRK13340 185 ALRIATLP-SLGIVGIMTHFPNEDE--DEVRWKLAQFKEQTAWLIGEAGLKREKITLHVANSYATLNVP--------EAH 253 (406)
T ss_pred HHHHHhCC-CccEEEEEEECCCCCc--HHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEecCCHHHHcCc--------hhc
Confidence 3566677 8999999999997532 334556667767766664 3465544 44554444431100 000
Q ss_pred HHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCc
Q 012098 323 IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQ 387 (471)
Q Consensus 323 ~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~ 387 (471)
.+.+|....-+|.. .|...-..++..+.++|+.+|+.. +..+.+++.||.|.+...+.+..
T Consensus 254 ~d~vR~G~~lyG~~---~p~~~~l~pv~~l~a~Vi~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~ls~~~- 329 (406)
T PRK13340 254 LDMVRPGGILYGDR---HPANTEYKRIMTFKSRIASVNTLPKGSTVGYDRTFTLKRDSRLANLPVGYSDGYPRHASNKA- 329 (406)
T ss_pred CCeEeeCeeeeCCC---CCCCCCCcccEEEEEEEEEEEEcCCcCccCCCCeEEcCCCcEEEEEeeecccCcCccCCCCc-
Confidence 11223222222210 233334678899999999999742 13567899999998765554421
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
. .++ ..+.+.|+|..|| |++..|+. .|+.++||.|+|.+-
T Consensus 330 ~-v~i-------~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 370 (406)
T PRK13340 330 P-VLI-------NGQRAPVVGRVSM--NTLMVDVTDIPNVKPGDEVVLFGK 370 (406)
T ss_pred E-EEE-------CCEEeeeeeeeec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 1 222 2567899999999 99998884 577889999988776
No 32
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.97 E-value=5.7e-28 Score=246.86 Aligned_cols=302 Identities=18% Similarity=0.146 Sum_probs=228.0
Q ss_pred EEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcH----HHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeC
Q 012098 94 FYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNY----KILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNG 168 (471)
Q Consensus 94 ~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~----~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g 168 (471)
...+|+++|++|++.+++.+++ +.++++++|||++. .|++.+.+.|+ +|.|+|..|+..++++|+++..+++ +
T Consensus 3 ~l~Idl~al~~N~~~i~~~~~~-~~~i~~vvKAnAYGhG~~~va~~l~~~g~~~f~Vas~~Ea~~lr~~Gi~~~ilvl-~ 80 (365)
T cd06826 3 WLEISTGAFENNIKLLKKLLGG-NTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRV-R 80 (365)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC-CCEEEEEEEeccccccHHHHHHHHHHCCCCEEEEccHHHHHHHHhcCCCCCEEEE-e
Confidence 3579999999999999998876 45899999999875 48888888886 9999999999999999998776677 4
Q ss_pred CCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH--HHHHH
Q 012098 169 NGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK--LQWFL 246 (471)
Q Consensus 169 ~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e--l~~~l 246 (471)
+ +++++++.++++++.++++|+++++.|.+.+++.+++.+|+||||++ | ++|||+.+++ +.+++
T Consensus 81 ~-~~~~e~~~~i~~~i~~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~-----------G--m~R~Gi~~~~~~~~~~~ 146 (365)
T cd06826 81 T-ATPSEIEDALAYNIEELIGSLDQAEQIDSLAKRHGKTLPVHLALNSG-----------G--MSRNGLELSTAQGKEDA 146 (365)
T ss_pred C-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCceEEEEEECCC-----------C--CCCCCCCcchhhHHHHH
Confidence 3 57789999999999999999999999999998889999999999851 3 8999999743 45666
Q ss_pred HHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCC--CEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI-RAQGFEV--DYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l-~~~g~~l--~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
..+...+ ++++.|+|+|+++.... ...++++++.+.++.+ ++.|... .++++++..++-... +. -.
T Consensus 147 ~~~~~~~-~l~l~Gi~tH~a~ad~~--~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~~l~~~-~~-------~~ 215 (365)
T cd06826 147 VAIATLP-NLKIVGIMTHFPVEDED--DVRAKLARFNEDTAWLISNAKLKREKITLHAANSFATLNVP-EA-------HL 215 (365)
T ss_pred HHHHHCC-CCcEEEEEEeCCCCCch--HHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHHHhcCc-cc-------cC
Confidence 6777777 89999999999986532 2345566666666655 4445543 477887766652211 10 12
Q ss_pred HHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 324 DTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
+.+|.....||.. |...-..++..+.++|+.+|... +....+++.||+|.+.+.+.+.. .
T Consensus 216 d~vR~G~~lyG~~----p~~~~l~pv~~l~a~Vi~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~ls~~~-~ 290 (365)
T cd06826 216 DMVRPGGILYGDT----PPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYRRSFSNKA-H 290 (365)
T ss_pred CcCccCeeeeCCC----CCccCceeeEEEEEEEEEEEEcCCcCcccCCCeEEcCCCcEEEEEeeecccCcCccCCCCc-E
Confidence 2345544444432 21235789999999999999732 13567899999998765554432 1
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCC-CCCCCCCCCEEEEcCC
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDA 437 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~-~lP~~~~GD~l~~~~~ 437 (471)
.++ ..+.+.|+|..|| |+++.|+ ..|++++||.|.+.+.
T Consensus 291 -v~i-------~g~~~pivGrv~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 330 (365)
T cd06826 291 -VLI-------NGQRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred -EEE-------CCEEeeeeceeee--ceEEEeCCCCCCCCCCCEEEEECC
Confidence 122 2567899999999 9999887 4577899999988765
No 33
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.96 E-value=5.3e-27 Score=241.24 Aligned_cols=255 Identities=16% Similarity=0.222 Sum_probs=196.8
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
.||+++||++.|++|++.|++.++..+.+++|++|+|.++.+++.+.+.|+ ||+|+|.+|++.++++|++ +|+|.+|
T Consensus 2 ~tP~l~idl~~l~~N~~~m~~~~~~~~~~l~~h~Kt~~~~~i~~~~~~~G~~g~~vas~~Ea~~l~~~G~~--~il~~~~ 79 (382)
T cd06818 2 SLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLANQ 79 (382)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHHhhcCcEEEeecchhhhHHHHHHHHHcCCCEEEEeEHHHHHHHHHcCCC--eEEEecC
Confidence 699999999999999999999986656789999999999999999999998 9999999999999999984 6777643
Q ss_pred --CCcH-HHHHHHHhC----CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC-HhH
Q 012098 170 --GKLL-EDLVLAAQE----GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEK 241 (471)
Q Consensus 170 --~k~~-~~l~~a~~~----gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~-~~e 241 (471)
+++. +++..+++. ++.++|||.++++.|.+.+++.|++++|+||||++ ++|.|+. .++
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g--------------~~R~G~~~~~~ 145 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--------------GGRTGVRTEAE 145 (382)
T ss_pred cCChHHHHHHHHhhhcCCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC--------------CCCCCCCCHHH
Confidence 3443 457777742 35689999999999999998889999999999864 8899996 577
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecCCC-----CCCHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEecCCCCcCCCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLGST-----ITKVDIFRDAAVLMVNYIDKIRAQGF---EVDYLNIGGGLGIDYYHTG 313 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~Gs~-----~~~~~~~~~~~~~~~~~~~~l~~~g~---~l~~ldiGGGl~i~y~~~~ 313 (471)
+.++++.+...+ ++++.|+|+|.|++ ..+.+..++.++.+.++.+.+++.+. ++.+++ |||-+
T Consensus 146 ~~~l~~~i~~~~-~l~l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ilS-gGgT~------- 216 (382)
T cd06818 146 ALALADAIAASP-ALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILT-AGGSA------- 216 (382)
T ss_pred HHHHHHHHHcCC-CceEeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEE-ecCCH-------
Confidence 888999988888 99999999999986 23445566777888888888887654 444555 55432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceE-------------------------EEEEEEEEeeCceeEE
Q 012098 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCL-------------------------VNHVTGVKTNGTKNFI 368 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~l-------------------------vt~V~~vk~~~~~~~~ 368 (471)
+++.+.+.+.......++.+.+|||||++.+++.+ +++|+++- .+..+
T Consensus 217 ----~~~~~~~~~~~~~~~~~~~~el~pG~y~~~D~g~~~~~~~~~k~~~~~~~~~~~~~al~vl~~ViS~p---~~~~~ 289 (382)
T cd06818 217 ----WFDLVAEALAALALDGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSRP---EPGLA 289 (382)
T ss_pred ----hHHHHHHhhcccccCCceeEEEecCeeEEecHHHHhhhhhhhhccCccccCcccccceEEEEEEeccc---CCCeE
Confidence 22222222221111235688999999999998654 45555542 23577
Q ss_pred EEcCCCCCC
Q 012098 369 VIDGSMAEL 377 (471)
Q Consensus 369 ivD~g~~~~ 377 (471)
++|+|.-.+
T Consensus 290 ~~daG~k~l 298 (382)
T cd06818 290 ILGMGKRDV 298 (382)
T ss_pred EECCcCCcC
Confidence 899987655
No 34
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.96 E-value=3.8e-27 Score=242.01 Aligned_cols=245 Identities=19% Similarity=0.267 Sum_probs=187.5
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
+||+++||+++|++|+++|++.++..+.+++|++|||+++.+++.+.+.|+ |++|+|.+|++.++++|++ .|++..+
T Consensus 5 ~tP~~vid~~~l~~Ni~~~~~~~~~~~~~l~~~vKa~~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~aG~~--~il~~~~ 82 (374)
T cd06812 5 DTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILYAVG 82 (374)
T ss_pred CCceEEEeHHHHHHHHHHHHHHHHHcCCceeeEecccCCHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC--eeEEeCC
Confidence 799999999999999999999997656789999999999999999999996 8999999999999999995 5766544
Q ss_pred CCcHHHHHHHHh---CC--CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHh-H-H
Q 012098 170 GKLLEDLVLAAQ---EG--VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE-K-L 242 (471)
Q Consensus 170 ~k~~~~l~~a~~---~g--v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~-e-l 242 (471)
+.+++++.+++ .+ +.++|||.++++.|.+.+++.|++++|+|||+++ ++|||+.++ + +
T Consensus 83 -~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~G--------------~~R~Gv~~~~~~~ 147 (374)
T cd06812 83 -IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD--------------GHRGGIAPDSDAL 147 (374)
T ss_pred -CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCC--------------CCcCCCCCCcHHH
Confidence 45555555443 34 5689999999999999998889999999999753 899999864 3 5
Q ss_pred HHHHHHHHcCCCCceEEEEEeecCCC--CCCHHHHHH----HHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCC
Q 012098 243 QWFLDAVKAHPNELKLVGAHCHLGST--ITKVDIFRD----AAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL 316 (471)
Q Consensus 243 ~~~l~~l~~~~~~l~l~Glh~H~Gs~--~~~~~~~~~----~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~ 316 (471)
.++++.++. + ++++.|+|+|.|++ +.+.+.+.+ +++.+.++.+.+++.|+++.++|+||+.++.+...-..
T Consensus 148 ~~l~~~i~~-~-~l~l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~Ggt~~~~~~~~~~~- 224 (374)
T cd06812 148 LEIARILHD-G-GAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGSTPTAHFAEDLTG- 224 (374)
T ss_pred HHHHHHHhc-C-CceEEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeecCChhhhhhcccCC-
Confidence 666666653 5 89999999999986 345555443 33447778888888899999999999887766321000
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEccccee--------------ecccceEEEEEEEEEeeCceeEEEEcCCCCC
Q 012098 317 PKPRNLIDTVRELVLSRNLNLIIEPGRSL--------------IANTCCLVNHVTGVKTNGTKNFIVIDGSMAE 376 (471)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~~l~~EpGR~l--------------va~ag~lvt~V~~vk~~~~~~~~ivD~g~~~ 376 (471)
. ..+.||-|+ -..+..++++|++++.. +..+++|+|.-.
T Consensus 225 --~-----------------~el~~G~y~~~D~~~~~~~~~~~~~~al~v~~~Vis~~~~--~~~~~~d~G~k~ 277 (374)
T cd06812 225 --V-----------------TEVRAGVYVFFDLVMAGIGVCGLDDIALSVVTTVIGHQPE--KGWILIDAGWMA 277 (374)
T ss_pred --c-----------------eEeccCceeeccHHHHhcCCCCchheEEEEEEEEECCCCC--CCeEEEccccce
Confidence 0 011111111 12477899999997632 246778998654
No 35
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.96 E-value=1.1e-26 Score=235.94 Aligned_cols=297 Identities=16% Similarity=0.134 Sum_probs=222.0
Q ss_pred EEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 95 YLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 95 ~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
..+|+++|++|++.+++.+++ .+++|++|||++ +.+++++.+ ..+|.|+|.+|+..++++|++++.+++.++.
T Consensus 4 ~~Idl~~l~~N~~~l~~~~~~--~~l~~vvKanaYGhG~~~ia~~l~~-~~~f~Vas~~Ea~~lr~~G~~~~ilvl~~~~ 80 (354)
T cd06827 4 ATIDLAALRHNLRLVRELAPN--SKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFF 80 (354)
T ss_pred EEEEHHHHHHHHHHHHhhCCC--CeEEEEEeeccccCCHHHHHHHHHc-CCEEEEccHHHHHHHHhCCCCCCEEEEECCC
Confidence 479999999999999998875 579999999984 899998887 6799999999999999999988777887875
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
.+ ++++.+++.++.++++|+++++.+.+.+ .+++.+|+|+||++ ++|||+.++|+.++++.++
T Consensus 81 ~~-~~~~~~~~~~l~~~v~s~~~l~~l~~~~--~~~~~~v~l~vDtG--------------m~R~Gi~~~e~~~~~~~i~ 143 (354)
T cd06827 81 SA-DELPLAAEYNLWTVVHSEEQLEWLEQAA--LSKPLNVWLKLDSG--------------MHRLGFSPEEYAAAYQRLK 143 (354)
T ss_pred CH-HHHHHHHHcCCEEEECCHHHHHHHHHhc--CCCCeEEEEEeeCC--------------cCCCCCCHHHHHHHHHHHH
Confidence 44 7888999999999999999999998765 46778999999854 8999999988988888888
Q ss_pred cCCCCceEEEEEeecCCCCCCHH-HHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVD-IFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~-~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
..+ ++++.|+|+|+++.....+ ....+++++.++.+.+ +. ..+++..-++.... + .-.+.+|..
T Consensus 144 ~~~-~l~l~Gi~tH~a~ad~~~~~~~~~Q~~~F~~~~~~~-----~~-~~h~~nS~~~~~~~-~-------~~~d~vR~G 208 (354)
T cd06827 144 ASP-NVASIVLMTHFACADEPDSPGTAKQLAIFEQATAGL-----PG-PRSLANSAAILAWP-E-------AHGDWVRPG 208 (354)
T ss_pred hCC-CceEEEEEeeccCCCCCCcHHHHHHHHHHHHHHhcc-----CC-CeeecCCHHHHCCc-c-------ccCceEccC
Confidence 777 8999999999998753222 2244555555544431 22 24666555443221 1 112346666
Q ss_pred HhcCCcEEEEc--ccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcceEEc
Q 012098 330 VLSRNLNLIIE--PGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQHIELV 392 (471)
Q Consensus 330 ~~~~~~~l~~E--pGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~~~~~ 392 (471)
...||..-.-+ ....-..++..+.++|+.+|+.. +...++++.||.|.+...+.+.. .++
T Consensus 209 ~~lyG~~p~~~~~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~ls~~~---~v~ 285 (354)
T cd06827 209 IMLYGASPFADKSGADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPSGT---PVL 285 (354)
T ss_pred ceeeCCCCCccccccCcCCeeeEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccCcccccCCCC---EEE
Confidence 55666421111 01235889999999999999831 13578899999998765554331 122
Q ss_pred CCCCCCCCceEEEEEccCCCCCceeccCC-CCCCCCCCCEEEEcCC
Q 012098 393 SPAPQDAEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDA 437 (471)
Q Consensus 393 ~~~~~~~~~~~~~i~G~tC~~~D~l~~~~-~lP~~~~GD~l~~~~~ 437 (471)
. ..+.+.|+|..|| |++..|+ ..|+.++||.+.|.+-
T Consensus 286 i------~g~~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~g~ 323 (354)
T cd06827 286 V------NGQRTPLVGRVSM--DMLTVDLTDLPEAKVGDPVELWGK 323 (354)
T ss_pred E------CCEEeeeeeEEec--cEEEEECCCCCCCCCCCEEEEECC
Confidence 1 2567899999999 9999887 4677899999999765
No 36
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.94 E-value=1.1e-24 Score=224.23 Aligned_cols=271 Identities=17% Similarity=0.163 Sum_probs=191.7
Q ss_pred HHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHH-cCC-ceEEcCHHHHHHHHHCCC
Q 012098 82 VQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRK-LGC-GAVLVSGNELRLALRAGF 159 (471)
Q Consensus 82 l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~-~G~-g~~vaS~~El~~a~~~G~ 159 (471)
+.++++++ +||+++||+++|++|++.|++.+++ .+++|++|++++..+++.+.+ .|+ |+.|+|..|+..++++|+
T Consensus 2 ~~~~~~~~-~tP~~viDldal~~N~~~l~~~~~~--~~ir~~vKa~~~~~ll~~~l~~~G~~g~~vas~~Ea~~l~~aG~ 78 (388)
T cd06813 2 YREAFAGL-DAPFAFVDLDALDANAADLVRRAGG--KPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGF 78 (388)
T ss_pred hhhhhccC-CCCEEEEEHHHHHHHHHHHHHHcCC--CcEEEEeccccCHHHHHHHHhhcCCceEEEecHHHHHHHHHcCC
Confidence 34566676 8999999999999999999998854 469999999999999988777 587 999999999999999999
Q ss_pred CCCcEEEeCCCCcHHHHHHHHhC-----CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC
Q 012098 160 DPTKCIFNGNGKLLEDLVLAAQE-----GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234 (471)
Q Consensus 160 ~~~~Ii~~g~~k~~~~l~~a~~~-----gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK 234 (471)
++|++.++.+++++++.+++. ++.++|||.++++.|.+++++.+++++|+||||++.... .+.+| ..|
T Consensus 79 --~~ILl~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~---G~~~G--~~R 151 (388)
T cd06813 79 --DDILVAYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFG---GLHFG--VRR 151 (388)
T ss_pred --CeEEEeCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCcccc---ccccC--cCC
Confidence 479998888888889988874 567999999999999999888888999999999864321 11223 233
Q ss_pred CCC-CHhHHHHHHHHHHcCCCCceEEEEEeecCC-C-CCCH----------------HHHHHHHHHHHHHHHHHHHcCCC
Q 012098 235 FGI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGS-T-ITKV----------------DIFRDAAVLMVNYIDKIRAQGFE 295 (471)
Q Consensus 235 fGi-~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs-~-~~~~----------------~~~~~~~~~~~~~~~~l~~~g~~ 295 (471)
.|+ +++++.++++.+.+.+ ++++.|+|+|.|+ + ..|. ..+++..+...++++.+++.|.+
T Consensus 152 s~~~~~~~~~~l~~~i~~~~-~l~l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~g~~ 230 (388)
T cd06813 152 SPLHTPAQALALAKAIAARP-GLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGED 230 (388)
T ss_pred CCCCCHHHHHHHHHHHhcCC-CcEEEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 334 3678888999988887 8999999999876 2 1211 01112223334667777778888
Q ss_pred CCEEEecCCCCc-CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCC
Q 012098 296 VDYLNIGGGLGI-DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSM 374 (471)
Q Consensus 296 l~~ldiGGGl~i-~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~ 374 (471)
+.++| |||.+. ++...+.. +..++....-++....-....+-..++.++.++|+ +.. ....+++|||.
T Consensus 231 ~~~vN-sgGt~s~~~~~~~~~-------~tevrpGs~lyg~~~~~~~~~~~~~pAl~~~t~Vv--~~~-~~g~~v~ygg~ 299 (388)
T cd06813 231 LEFVN-GGGTGSLESTAADAV-------VTEVTAGSGLYAPALFDHYRSFQPEPAAGFALPVV--RRP-APGIVTCLGGG 299 (388)
T ss_pred CCEEe-CCCchhheeecCCCC-------ceEeccceEEecchhhcccccCCCCceeEEEeeEE--ccc-CCCeEEEECCc
Confidence 99999 555543 33211110 11222222222222221111123788999999994 443 23467788873
No 37
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.94 E-value=4e-25 Score=225.32 Aligned_cols=260 Identities=17% Similarity=0.165 Sum_probs=195.7
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
+||++++|+++|++|++.|++.++..+.+++|++|+|+++.+++.+.+.|+ +|+|+|..|++.+++.|++ +|.+..+
T Consensus 2 ~tP~l~id~~~l~~Ni~~~~~~~~~~~v~l~~~~K~h~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~i~i~~~ 79 (353)
T cd06820 2 DTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGLS--DIFIAYP 79 (353)
T ss_pred CCceEEEeHHHHHHHHHHHHHHHHHcCCccccccccccCHHHHHHHHhCCCCCEEEeeHHHHHHHHHCCCC--eEEEECC
Confidence 699999999999999999999987656789999999999999999999997 9999999999999999995 4766555
Q ss_pred CCcH---HHHHHHHhC-CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHHH
Q 012098 170 GKLL---EDLVLAAQE-GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQW 244 (471)
Q Consensus 170 ~k~~---~~l~~a~~~-gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~~ 244 (471)
.... +++..+++. .+.+++||+++++.|.+++++.+++++|+||||++ ++|||+.+ +++.+
T Consensus 80 ~~~~~~~~~l~~l~~~~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G--------------~~R~Gv~~~~~~~~ 145 (353)
T cd06820 80 IVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG--------------MNRCGVQTPEDAVA 145 (353)
T ss_pred cCCHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCC--------------CCcCCCCChHHHHH
Confidence 3322 344455443 46799999999999999999889999999999864 79999988 88999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCCC---HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTITK---VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~~---~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
+++.+.+.+ ++++.|+|+|.|+.... ...+++.++.+.++.+.+++.|..+.++++||+..+.+......
T Consensus 146 l~~~i~~~~-~l~l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Ggs~t~~~~~~~~~------ 218 (353)
T cd06820 146 LARAIASAP-GLRFRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTLWRSHEVPG------ 218 (353)
T ss_pred HHHHHHhCC-CcEEEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCcChhhhhhhccCC------
Confidence 999998887 89999999999986522 23566777888888888888899999999999887655321000
Q ss_pred HHHHHHHHHhcC-CcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCC
Q 012098 322 LIDTVRELVLSR-NLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAEL 377 (471)
Q Consensus 322 ~~~~i~~~~~~~-~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~ 377 (471)
.+.+|...--+ +..-..-..-....++..++++|+++... ..+++|+|.-.+
T Consensus 219 -~~elR~G~~i~~d~~~~~~~~~~~~~~a~~v~a~Vis~~~~---~~~i~d~G~~~l 271 (353)
T cd06820 219 -ITEIRPGTYIFNDASQVALGACTLDDCALTVLATVVSRPTA---ERAVLDAGSKAL 271 (353)
T ss_pred -ceEEccccEEeecHHHHhcCCCChhheEEEEEEEEecccCC---CeEEECCcccce
Confidence 00111100000 00000000001235677899999987532 467899987643
No 38
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.94 E-value=6.7e-25 Score=224.17 Aligned_cols=303 Identities=17% Similarity=0.161 Sum_probs=225.2
Q ss_pred EEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeC
Q 012098 94 FYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNG 168 (471)
Q Consensus 94 ~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g 168 (471)
...+|+++|++|++.+++.++. +.+++.++|||.+ ..+++.+.+.|+ +|.|++..|+..++++|++.+ |++-+
T Consensus 3 ~~~Idl~al~~N~~~i~~~~~~-~~~i~~VVKanAYGhG~~~va~~l~~~G~~~faVa~~~EA~~Lr~~Gi~~~-Ilvl~ 80 (368)
T cd06825 3 WLEIDLSALEHNVKEIKRLLPS-TCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGE-ILILG 80 (368)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC-CCeEEEEEeccccCCCHHHHHHHHHHcCCCEEEEccHHHHHHHHhcCCCCC-EEEEc
Confidence 3579999999999999998875 4679999999764 799999999997 899999999999999999754 54435
Q ss_pred CCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 169 NGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 169 ~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+. .++++..++++++.++|+|.++++.+.+.+ ++.+|+|+|++ | ++|+|+.++++ +++..
T Consensus 81 ~~-~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~----~~~~vhlkvDt------------G--m~R~G~~~~~~-~~~~~ 140 (368)
T cd06825 81 YT-PPVRAKELKKYSLTQTLISEAYAEELSKYA----VNIKVHLKVDT------------G--MHRLGESPEDI-DSILA 140 (368)
T ss_pred CC-CHHHHHHHHHcCCEEEECCHHHHHHHHhcC----CCceEEEEeeC------------C--CCCCCCCHHHH-HHHHH
Confidence 42 457788899999999999999999987754 56789999975 4 99999998665 45555
Q ss_pred HHcCCCCceEEEEEeecCCCCC-CH---HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTIT-KV---DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID 324 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~-~~---~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~ 324 (471)
+...+ ++++.|+++|+++... +. +..+++++++.++.+.+++.|.++.++++|+..++-... +. -.+
T Consensus 141 ~~~~~-~l~~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~~~~~~h~~nSa~~l~~~-~~-------~~d 211 (368)
T cd06825 141 IYRLK-NLKVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYP-DL-------KYD 211 (368)
T ss_pred HHhCC-CCcEEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCCCCCcEEeeCCHHHhCCc-cc-------cCC
Confidence 66677 8999999999997642 21 234567777888888888778888899999876543221 10 122
Q ss_pred HHHHHHhcCCcEEEEc---ccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcC
Q 012098 325 TVRELVLSRNLNLIIE---PGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAY 386 (471)
Q Consensus 325 ~i~~~~~~~~~~l~~E---pGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~ 386 (471)
.+|....-||+.-.-+ +...-..+++.+.++|+.+|+.. +..+.+++.||.|.+.+.+.+..
T Consensus 212 ~vR~G~~lYG~~p~~~~~~~~~~~l~pv~~l~a~v~~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~ls~~~ 291 (368)
T cd06825 212 YVRPGILLYGVLSDPNDPTKLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFVASRTTRIATVSIGYADGYPRSLSNQK 291 (368)
T ss_pred eEccCeEEECCCCCCccccccccCceeeEEEEEEEEEEEEcCCCCcCCCCCcEEcCCCcEEEEEeeecccCcCcccCCCc
Confidence 3555444445321101 00134789999999999999731 13567899999998766555431
Q ss_pred cceEEcCCCCCCCCceEEEEEccCCCCCceeccCC-CCCCCCCCCEEEEcCC
Q 012098 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDA 437 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~-~lP~~~~GD~l~~~~~ 437 (471)
.. .++ ..+++.|+|..|| |+++.|+ ..|++++||.++|.+-
T Consensus 292 ~~-V~i-------~g~~~pivGri~M--D~~~vdvt~~~~~~~Gd~v~l~G~ 333 (368)
T cd06825 292 AY-VLI-------NGKRAPIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQ 333 (368)
T ss_pred cE-EEE-------CCEEeeeeeEeec--ceEEEECCCCCCCCCCCEEEEEcC
Confidence 11 122 2568899999999 9999887 4577889999988765
No 39
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.94 E-value=6.9e-25 Score=224.23 Aligned_cols=333 Identities=18% Similarity=0.116 Sum_probs=222.4
Q ss_pred HhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 87 ETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 87 ~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
+++ +||++++|+++|++|++.|++.++. +.+++|++|+|+++.+++.+.+.|+ +|+|+|..|++.++++|++ .|+
T Consensus 5 ~~~-~tP~~~id~~~l~~Ni~~~~~~~~~-~~~l~~~vKah~~~~i~~~~~~~G~~~~~vas~~Ea~~~~~~G~~--~il 80 (361)
T cd06821 5 DEI-ISPALAVYPDRIEENIRRMIRMAGD-PQRLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVL 80 (361)
T ss_pred ccC-CCceEEEeHHHHHHHHHHHHHHHhc-CCCccccchhhcCHHHHHHHHhcCCCcEEEecHHHHHHHHHcCCC--eEE
Confidence 344 8999999999999999999999884 4579999999999999999999998 9999999999999999996 454
Q ss_pred EeCC--C-CcHHHHHHHHhC---CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH
Q 012098 166 FNGN--G-KLLEDLVLAAQE---GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239 (471)
Q Consensus 166 ~~g~--~-k~~~~l~~a~~~---gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~ 239 (471)
+..+ + +..+.++.+.+. .+.++|||+++++.|.+.+++.+++++|+||||++ ++|||+.+
T Consensus 81 l~~~~~~~~~~~~~~l~~~~~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G--------------~~R~Gv~~ 146 (361)
T cd06821 81 LAYPLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG--------------MNRTGIAP 146 (361)
T ss_pred EeCCCCHHHHHHHHHHHhhCCCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCC--------------CCcCCCCC
Confidence 4332 2 222334444442 35689999999999999998888899999999864 79999988
Q ss_pred h-HHHHHHHHHHcCCCCceEEEEEeecCCCC-CC----HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCC
Q 012098 240 E-KLQWFLDAVKAHPNELKLVGAHCHLGSTI-TK----VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313 (471)
Q Consensus 240 ~-el~~~l~~l~~~~~~l~l~Glh~H~Gs~~-~~----~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~ 313 (471)
+ ++.++++.+.+.+ ++++.|+|+|.|+.. .+ .+.++++++.+.++.+.+++.|..+.++++||.-++.+....
T Consensus 147 ~~~~~~l~~~i~~~~-~l~l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~GgS~~~~~~~~~ 225 (361)
T cd06821 147 GEDAEELYRAIATLP-GLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGTPSFPFHAAY 225 (361)
T ss_pred hHHHHHHHHHHhhCC-CceEeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCcchhhhccC
Confidence 6 7899999988887 899999999998753 33 335667778888888889888888999999987665443210
Q ss_pred CCCCCHHHHHHHHHHHHhcCCc-E-EEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEE
Q 012098 314 AVLPKPRNLIDTVRELVLSRNL-N-LIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~-~-l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~ 391 (471)
.. +.+|...--++. . ...-++ .-..++..++++|+++-. ...+++|+|...+-.... .....+
T Consensus 226 -~~-------~~vr~G~~l~gd~~~~~~~~~-~~~~~al~v~s~Vis~~~---~~~~~~d~G~~~~~~d~~---~~~~~~ 290 (361)
T cd06821 226 -TD-------VECSPGTFVLWDAGYGSKLPD-LGFKPAALVVTRVISHPT---AGRVTLDLGHKAVASDPP---LPRVCL 290 (361)
T ss_pred -CC-------cEECCceEEEecHHHhhccCC-CcCceeEEEEEEEEeecc---CCEEEECCcccccccccC---CCccee
Confidence 00 111111000000 0 000001 125667788999998742 357789999765422110 000001
Q ss_pred cCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEEEEec
Q 012098 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469 (471)
Q Consensus 392 ~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~~~~~ 469 (471)
.. . + ...+.+...+-+ ++... ....+++||+|.+--.-+ -..+|.+ +..+++++++...+-|
T Consensus 291 ~~-~----~--~~~~~~~s~eh~-~l~~~-~~~~~~vGd~v~~~p~H~-----c~t~~~~--~~~~~v~~~~v~~~w~ 352 (361)
T cd06821 291 LG-L----P--DAEPVGHSEEHL-VLETP-EAARPEIGDVLYGIPRHI-----CPTVALY--DEALVVRDGRIVGTWP 352 (361)
T ss_pred cC-C----C--CeEEccCCccce-eEeCC-CCCCCCCCCEEEEeCCCc-----Ccchhcc--CEEEEEECCEEEEEEE
Confidence 11 0 0 133444333321 22111 123478999998743211 1244544 3466667776665544
No 40
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=2e-24 Score=215.85 Aligned_cols=302 Identities=20% Similarity=0.174 Sum_probs=229.9
Q ss_pred CcEE-EEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcE-
Q 012098 92 RPFY-LYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKC- 164 (471)
Q Consensus 92 tP~~-v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~I- 164 (471)
+|.+ .+|+++|++|++.+++..++ .+++.+||||++ ..|.+++.++|+ +|.|++.+|+...++.|++...|
T Consensus 3 ~~~~~~Idl~Al~~N~~~i~~~~~~--~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~Il 80 (360)
T COG0787 3 RPATAEIDLGALRHNLRALRELAGP--AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPIL 80 (360)
T ss_pred CCEEEEEeHHHHHHHHHHHHHhCCC--cEEEEEEeccccCCCHHHHHHHHHHcCCCEEEECcHHHHHHHHHcCCCCCCEE
Confidence 4444 69999999999999988776 579999999997 689999999998 89999999999999999984345
Q ss_pred EEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH
Q 012098 165 IFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244 (471)
Q Consensus 165 i~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~ 244 (471)
++.|- .+.+++..++++++..+|.|+++++.+.+.+... ++++|+|+++. | |+|+|+.+++...
T Consensus 81 vL~g~-~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~-~~l~vhLkiDT------------G--M~RlG~~~~e~~~ 144 (360)
T COG0787 81 VLEGF-FPAEELELAAAYNLTPVVNSLEQLEALKNAALKN-KPLKVHLKIDT------------G--MNRLGLRPEEAVA 144 (360)
T ss_pred EEcCc-CChhhHHHHHHcCCeEEECCHHHHHHHHHhhhhc-CceEEEEEECC------------C--CCcCCCChHHHHH
Confidence 55544 4556668889999999999999999998877655 67999999974 4 9999999988777
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCCC-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTITK-VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~~-~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
.+..+...+ ++.+.|+++|+++.... ......+++++. +...+.+...+++..+-++-... +..+
T Consensus 145 ~~~~~~~~~-~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~-----~~~~~~~~~~~h~aNSa~~~~~~--------~~~~ 210 (360)
T COG0787 145 LAIDLIALK-NLDLEGIFSHFACADEPEDPYTLKQLERFN-----LAKQGLPGELSHLANSAGLLLGP--------DYHF 210 (360)
T ss_pred HHHHHhhcc-CCceEEEEcccCCCCCCCChHHHHHHHHHH-----HHhccCCCceEEEeccHHHhcCc--------cccc
Confidence 777766665 67799999999886532 224445555443 44567788888887665543221 1234
Q ss_pred HHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 324 DTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
+.+|..+..||..-.-+.. .-..++.++.++|+++|+.. +..+.++..||+|.+.+.+.+.. +
T Consensus 211 d~vRpGi~lYG~~P~~~~~-~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~pR~~~~~~-~ 288 (360)
T COG0787 211 DMVRPGIALYGLSPSGGLD-NGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGYPRALSNGT-P 288 (360)
T ss_pred ceeecceeeecCCcccccC-CCcceeEEEEEEEEEEEEeCCCCcccCCcEEEccCCceEEEEeccccCCchhhcCCCC-E
Confidence 5677777667753332222 56889999999999999842 13467899999998876655421 2
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCC-CCCCCCCCCEEEEcCC
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKER-ELPTPDRGAGLVVHDA 437 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~-~lP~~~~GD~l~~~~~ 437 (471)
.++. .+++.|+|++|| |++..|+ .+|++++||.+.+.+-
T Consensus 289 -Vli~-------G~r~pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 289 -VLIN-------GKRVPIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred -EEEC-------CEEeeEeeEEee--eeEEEECCCCCCCCCCCEEEEECC
Confidence 2332 567899999999 9999887 5777899999998765
No 41
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.93 E-value=2.5e-24 Score=220.89 Aligned_cols=203 Identities=20% Similarity=0.160 Sum_probs=168.8
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccC-CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN-NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNG 168 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g 168 (471)
..++|+||+++|++|++.+++.++..+.+++|++|+| .++.+++.+.+.|+ +++|+|.+|++.++++|+++..|. .+
T Consensus 27 ~~~~yvIDl~~I~~N~~~l~~~~~~~~~~l~~vvKAna~~~~ia~~l~~~G~~g~~vas~~Ea~~lr~aGi~~~~I~-~l 105 (382)
T cd06811 27 PPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVG-HL 105 (382)
T ss_pred CCCEEEecHHHHHHHHHHHHHHHhhCCCEEEEEEccCCCCHHHHHHHHHcCCCeEeEecHHHHHHHHHcCCCHHhEE-Ec
Confidence 3678999999999999999999976567899999999 58999999999998 999999999999999999876776 44
Q ss_pred CCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHH
Q 012098 169 NGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247 (471)
Q Consensus 169 ~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~ 247 (471)
..++.++++.+++.++ .++|||+++++.|.+++++.|++++|+||||++. ..+.+| ++.|++++++.++++
T Consensus 106 ~~~~~~el~~~v~~~~~~i~V~s~~~l~~L~~~A~~~g~~~~V~LrVdtg~-----~ri~~g---~~~G~~~~e~~~~~~ 177 (382)
T cd06811 106 VQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVYGDE-----DTLYPG---QEGGFPLEELPAVLA 177 (382)
T ss_pred cCCCHHHHHHHHHcCCCEEEECCHHHHHHHHHHHHHcCCceEEEEEEECCC-----CccccC---ccceecHHHHHHHHH
Confidence 4467889999999997 6999999999999999988899999999999752 222333 356999999999999
Q ss_pred HHHcCCCCceEEEEEeecCCCCCCHH----HHHHHHHHHHHHHHHHHHcCCCCCEEEecCC
Q 012098 248 AVKAHPNELKLVGAHCHLGSTITKVD----IFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304 (471)
Q Consensus 248 ~l~~~~~~l~l~Glh~H~Gs~~~~~~----~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGG 304 (471)
.+++++ ++++.|+|.| +++..+.+ .+.+.++.+.++.+.+++.|.++.++|+||.
T Consensus 178 ~i~~l~-~l~l~Githf-~~~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~Gga 236 (382)
T cd06811 178 AIKALP-GIRIAGLTSF-PCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSA 236 (382)
T ss_pred HHHcCC-CcEEEeEccc-chhhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccCCC
Confidence 998887 8999999655 55422221 2455677788888888888889999998853
No 42
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.93 E-value=4.1e-24 Score=217.58 Aligned_cols=317 Identities=15% Similarity=0.137 Sum_probs=219.9
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccC-CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN-NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
.|..++|+++|++|++.+++.++..+.++++++|+| ...++++.+.++|+ +|.|++..|+..+++.|+....+++ |+
T Consensus 1 ~P~l~Idl~al~~Ni~~i~~~~~~~~~~l~~vvKa~hg~~~va~~l~~~G~~~f~va~i~EA~~lr~~G~~~~illl-g~ 79 (353)
T cd06815 1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLL-RI 79 (353)
T ss_pred CCeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEcccCCCHHHHHHHHHcCCCEEEeccHHHHHHHHhcCCCCCEEEE-CC
Confidence 388999999999999999998763356899999999 67899999999997 8999999999999999986544444 65
Q ss_pred CCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 170 GKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
. ..++++.++++++..+++|+++++.+.+.+++.+++++|+|+||++ ++|+|+.++|+.++++.+
T Consensus 80 ~-~~~~~~~~~~~~~~~~i~s~~~~~~l~~~a~~~~~~~~vhlkvDtG--------------m~R~G~~~~e~~~~~~~i 144 (353)
T cd06815 80 P-MLSEVEDVVKYADISLNSELETIKALSEEAKKQGKIHKIILMVDLG--------------DLREGVLPEDLLDFVEEI 144 (353)
T ss_pred C-CHHHHHHHHhhcceeccChHHHHHHHHHHHHHcCCccceEEEEecC--------------CCccccCHHHHHHHHHHH
Confidence 3 4678999999888877999999999999888888889999999854 899999998899999999
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA-QGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~ 328 (471)
+..+ ++++.|+++|+++.... +.....++++.++.+.+++ .|..+.++++|+.-++...... ..+. -.+.+|.
T Consensus 145 ~~~~-~l~~~Gi~tH~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~S~~~~~~~~~-~~~~---~~~~vRp 218 (353)
T cd06815 145 LKLP-GIELVGIGTNLGCYGGV-LPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKG-ELPG---GINQLRI 218 (353)
T ss_pred hCCC-CcEEEecccCccccCCC-CCCHHHHHHHHHHHHHHHHhhCCCCCEEeccchHHHHHHHhc-CCcC---CCceeEe
Confidence 8887 89999999999875321 1112344555666666665 4667778998865443211000 0000 1123444
Q ss_pred HHhc-CCcEEEEc-ccceeecccceEEEEEEEEEee----Cc------------------eeEEEEcCCCCCCcChhhhh
Q 012098 329 LVLS-RNLNLIIE-PGRSLIANTCCLVNHVTGVKTN----GT------------------KNFIVIDGSMAELIRPSLYD 384 (471)
Q Consensus 329 ~~~~-~~~~l~~E-pGR~lva~ag~lvt~V~~vk~~----~~------------------~~~~ivD~g~~~~~~~~l~~ 384 (471)
...- +|..-.-+ +-..-..++..+.++|+.+|+. .+ ....+++.||.+.+...+.+
T Consensus 219 G~~l~yG~~p~~~~~~~~~l~p~~~l~s~Vi~i~~~~~~~~g~~~yd~~G~~~~~~~~~~~~ia~v~~GyaDG~~r~ls~ 298 (353)
T cd06815 219 GEAILLGRETTYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDPDGLTP 298 (353)
T ss_pred ehhhhccccccCCccccccccccEEEEEEEEEEecCCCCCCcceeeccCCCCceeecCCceEEEEEecccccCCHHhCcc
Confidence 3322 24311000 0112478899999999999962 11 12334555555543222111
Q ss_pred cCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CC-CCCCCCEEE-EcCCCccccccCCCC
Q 012098 385 AYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LP-TPDRGAGLV-VHDAGAYCMSMASTY 448 (471)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP-~~~~GD~l~-~~~~GAY~~~~~~~f 448 (471)
....+.++|. || |++..++. .| ++++||.|. |++=.+-+..+-+.|
T Consensus 299 ---------------~g~~~~ivG~-~m--d~~~vdv~~~~~~~~~Gd~v~l~p~h~~~~~~~~~~~ 347 (353)
T cd06815 299 ---------------VDNGIEILGA-SS--DHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPY 347 (353)
T ss_pred ---------------CCCCCeEEec-CC--ceEEEEccCCCCCCCCCCEEEEEeCHHHHHHHhcCCC
Confidence 1235789998 98 88888773 45 788999985 466444444444443
No 43
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.92 E-value=7.9e-23 Score=207.71 Aligned_cols=296 Identities=16% Similarity=0.172 Sum_probs=214.7
Q ss_pred EEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 95 YLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 95 ~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
..+|+++|++|++.+++..++ .+++.++|||.+ ..|++.+.+ -.+|.|++..|+..++++|++.+-+++.|+
T Consensus 6 ~~Idl~al~~N~~~i~~~~~~--~~i~aVVKanAYGhG~~~va~~l~~-~~~faVa~l~Ea~~LR~~Gi~~~Ilvl~~~- 81 (355)
T PRK03646 6 ASLDLQALKQNLSIVREAAPG--ARVWSVVKANAYGHGIERIWSALGA-TDGFAVLNLEEAITLRERGWKGPILMLEGF- 81 (355)
T ss_pred EEEEHHHHHHHHHHHHHhCCC--CeEEEEEeeccccCCHHHHHHHHhc-CCEEEEeeHHHHHHHHhcCCCCCEEEEeCC-
Confidence 579999999999999998764 579999999865 688887754 338999999999999999997654455454
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
..+++++.+.++++.++++|.++++.|.+.+ .+++.+|+|+|++ | ++|.|+.++|+.++++.++
T Consensus 82 ~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~--~~~~~~vhLkvDT------------G--M~R~G~~~~e~~~~~~~i~ 145 (355)
T PRK03646 82 FHAQDLELYDQHRLTTCVHSNWQLKALQNAR--LKAPLDIYLKVNS------------G--MNRLGFQPERVQTVWQQLR 145 (355)
T ss_pred CCHHHHHHHHHCCCEEEECCHHHHHHHHHhc--cCCCeEEEEEeeC------------C--CCCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999998764 4678899999974 4 9999999999999999888
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV 330 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~ 330 (471)
..+ ++++.|+++|+++... .+...++++++.++.+ +.+. .+++++.-++.... + .-.+.+|...
T Consensus 146 ~~~-~l~~~Gi~sH~a~ad~-~~~~~~Q~~~F~~~~~-----~~~~-~~h~~nSa~~~~~~-~-------~~~d~vR~Gi 209 (355)
T PRK03646 146 AMG-NVGEMTLMSHFARADH-PDGISEAMARIEQAAE-----GLEC-ERSLSNSAATLWHP-Q-------AHFDWVRPGI 209 (355)
T ss_pred hCC-CCEEEEEEcCCCCCCC-CCHHHHHHHHHHHHHh-----ccCC-CeeeeCCHHHHCCc-c-------ccCCeeccce
Confidence 887 8999999999998643 2233445554444432 2222 35666555443221 1 1123456555
Q ss_pred hcCCcEEEEc--cc-ceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcceEEc
Q 012098 331 LSRNLNLIIE--PG-RSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQHIELV 392 (471)
Q Consensus 331 ~~~~~~l~~E--pG-R~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~~~~~ 392 (471)
..||..-.-+ +. ..-..++..+.++|+.+|... +..+.+++.||+|.+...+.+.. .++
T Consensus 210 ~lYG~~p~~~~~~~~~~~lkpv~~l~a~v~~vk~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~ls~~~---~v~ 286 (355)
T PRK03646 210 ILYGASPSGQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARREQRIGIVAAGYADGYPRHAPTGT---PVL 286 (355)
T ss_pred eeeCCCCCcccccccccCceEEEEEEEEEEEEEEcCCcCCcCCCCeEEcCCCcEEEEEeeccccccCcccCCCC---EEE
Confidence 5565421111 00 113789999999999999742 13567899999998765544321 122
Q ss_pred CCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 393 SPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 393 ~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
. ..+.+.|+|..|| |+++.|+. .|++++||.++|.+.
T Consensus 287 i------~g~~~pivGrv~M--D~~~vDvt~~~~~~~Gd~V~l~G~ 324 (355)
T PRK03646 287 V------DGVRTRTVGTVSM--DMLAVDLTPCPQAGIGTPVELWGK 324 (355)
T ss_pred E------CCEEeeeeeEEec--ceEEEECCCCCCCCCCCEEEEECC
Confidence 1 2567899999999 99998874 577899999999864
No 44
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.91 E-value=1.1e-22 Score=228.43 Aligned_cols=320 Identities=16% Similarity=0.169 Sum_probs=241.6
Q ss_pred CcCHHHHHHhcC---CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHH
Q 012098 79 DVRVQDVMETVE---KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNE 150 (471)
Q Consensus 79 ~i~l~~l~~~~~---~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~E 150 (471)
++.++++++.+. +.....+|+++|++|++.+++.++. +.+++.++|+|.+ ..|++.+.+.|+ +|.|++..|
T Consensus 443 ~~~le~i~~~~~~~~~~~~~~Idl~al~~N~~~i~~~~~~-~~k~~aVvKa~aYGhG~~~va~~l~~~G~~~f~Va~l~E 521 (822)
T PRK11930 443 KFEFEQITELLEQKVHETVLEINLNAIVHNLNYYRSKLKP-ETKIMCMVKAFAYGSGSYEIAKLLQEHRVDYLAVAYADE 521 (822)
T ss_pred CCCHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHhhCCC-CCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeeHHH
Confidence 688888887752 3556789999999999999997765 4679999999995 689999999997 899999999
Q ss_pred HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcC-CceEEEEEEecCCCCCCCcccccC
Q 012098 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG-KKVNVLLRINPDVDPQVHPYVATG 229 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g-~~~~V~lRin~~~~~~~~~~~~tg 229 (471)
+..++++|++.. |++.++. ++++..++++++.++|+|.++++.+.+.+++.+ ++.+|+|+|++ |
T Consensus 522 a~~lr~~g~~~~-Ilvl~~~--~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~~v~l~vDt------------G 586 (822)
T PRK11930 522 GVSLRKAGITLP-IMVMNPE--PTSFDTIIDYKLEPEIYSFRLLDAFIKAAQKKGITGYPIHIKIDT------------G 586 (822)
T ss_pred HHHHHhcCCCCC-EEEEeCC--HHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCCceEEEEEeeC------------C
Confidence 999999999754 6555763 578889999999999999999999999888777 88999999974 4
Q ss_pred CCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCC-CH-HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCc
Q 012098 230 NKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT-KV-DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307 (471)
Q Consensus 230 ~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~-~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i 307 (471)
++|.|+.++++.++++.+...+ ++++.|+++|+++... +. ...+++++++.++.+.+++.+....+++++..-++
T Consensus 587 --m~R~G~~~~~~~~~~~~i~~~~-~l~~~Gi~tH~~~ad~~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~h~~nS~~~ 663 (822)
T PRK11930 587 --MHRLGFEPEDIPELARRLKKQP-ALKVRSVFSHLAGSDDPDHDDFTRQQIELFDEGSEELQEALGYKPIRHILNSAGI 663 (822)
T ss_pred --CCCCCCChHHHHHHHHHHHhCC-CCcEEEEECCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCCcEEccCCHHH
Confidence 9999999988888888888877 8999999999997643 22 23466777888888888765322237788876665
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcC
Q 012098 308 DYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDG 372 (471)
Q Consensus 308 ~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~ 372 (471)
-... +. -.+.+|....-||..-..+ ...-..++..+.++|+.+|... +..+.+++.
T Consensus 664 ~~~~-~~-------~~d~vR~G~~lyG~~p~~~-~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~i 734 (822)
T PRK11930 664 ERFP-DY-------QYDMVRLGIGLYGVSASGA-GQQALRNVSTLKTTILQIKHVPKGETVGYGRKGVVTKPSRIATIPI 734 (822)
T ss_pred hCCc-cc-------cCCeEeeCceeECCCCCCC-ccccCEEeeEEEEEEEEEEEcCCcCCCCCCCcEEcCCCcEEEEEee
Confidence 3221 11 1234566555555421100 1124689999999999999742 125678999
Q ss_pred CCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 373 SMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 373 g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
||.|.+.+.+.+.. ..++. ..+.+.|+|+.|| |+++.|+. . ++++||.|++.+.
T Consensus 735 GYaDG~~r~~s~~~--~~v~i------~g~~~pivGrv~M--D~~~vdvt~~-~~~~Gd~v~l~g~ 789 (822)
T PRK11930 735 GYADGLNRRLGNGV--GYVLV------NGQKAPIVGNICM--DMCMIDVTDI-DAKEGDEVIIFGE 789 (822)
T ss_pred ecccccccccCCCc--eEEEE------CCEEcceeeEeec--ceEEEEcCCC-CCCCCCEEEEECC
Confidence 99998765554320 11222 2567899999999 99998773 3 5789999988764
No 45
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.91 E-value=3.9e-22 Score=202.73 Aligned_cols=251 Identities=15% Similarity=0.114 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHH
Q 012098 101 QITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179 (471)
Q Consensus 101 ~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a 179 (471)
+|++|++.|++.+...+.++++++|++.++.+++.+.+.|+ +|.|+|..|++.++++|+ .+|++.+|.+..++++.+
T Consensus 1 ~l~~Ni~~~~~~~~~~~~~l~~vvKah~~~~v~~~l~~~G~~~~~vat~~Ea~~l~~~G~--~~Ili~~~~~~~~~~~~~ 78 (345)
T cd07376 1 ALEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARL 78 (345)
T ss_pred ChHHHHHHHHHHHHHcCCccccccchhcCHHHHHHHHhCCCCcEEEecHHHHHHHHHcCC--CeEEEECCcCCHHHHHHH
Confidence 47899999999884335679999999999999999999998 999999999999999998 578888887655555555
Q ss_pred H---h--CCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHH--HHHcC
Q 012098 180 A---Q--EGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD--AVKAH 252 (471)
Q Consensus 180 ~---~--~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~--~l~~~ 252 (471)
. + .++.++|||.++++.|.+.+.+.+++++|+|+||.+ ++|+|+++++...+.. .+++.
T Consensus 79 ~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~G--------------~~R~Gv~~~~~~~l~~~~~i~~~ 144 (345)
T cd07376 79 AGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG--------------GHRSGVRPEEAAALALADAVQAS 144 (345)
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCeeEEEEEeCCC--------------CCcCCCCCcHHHHHHHHHHhccC
Confidence 4 3 567899999999999999998888999999999843 8999998755433333 22356
Q ss_pred CCCceEEEEEeecCCCCC-C-----HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHH
Q 012098 253 PNELKLVGAHCHLGSTIT-K-----VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTV 326 (471)
Q Consensus 253 ~~~l~l~Glh~H~Gs~~~-~-----~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i 326 (471)
+ ++++.|+|+|.|+... + .....++++.+.++++.++ .|.++.++++||.-++.+...+.. .+.+
T Consensus 145 ~-~l~l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~vs~G~S~~~~~~~~~~~-------~~~v 215 (345)
T cd07376 145 P-GLRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RGLACPTVSGGGTPTYQLTAGDRA-------VTEL 215 (345)
T ss_pred C-CeEEeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEeCCCcChhhcccCCC-------CEEE
Confidence 6 8999999999995422 1 1234455666666666665 578888999998766543211100 0112
Q ss_pred HHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCc
Q 012098 327 RELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI 378 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~ 378 (471)
|....-++..-....|..-..+++.++++|+++-.. +.++++|+|...+-
T Consensus 216 R~G~~lyg~~~~~~~~~~~~~~~a~~~~~Vis~~~~--~~~~~~d~G~k~~~ 265 (345)
T cd07376 216 RAGSYVFMDTGFDTLGACAQRPAAFRVTTVISRPAP--TGRAVLDAGWKASS 265 (345)
T ss_pred cCceEEecchHHhhcccCCccceeEEEEEEEeccCC--CCeEEECCCccccc
Confidence 211111111111112222345677778999987532 25789999976543
No 46
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.88 E-value=8.1e-21 Score=181.16 Aligned_cols=192 Identities=18% Similarity=0.133 Sum_probs=160.6
Q ss_pred EeHHHHHHHHHHHHHHhc--CCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCC-CCcEEEeCCCCc
Q 012098 97 YSKPQITRNVEAYKQALE--GLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFD-PTKCIFNGNGKL 172 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~--~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~-~~~Ii~~g~~k~ 172 (471)
-+++.+++|++.+++.+. ..+.++++++|++....+.+. .++|+ +|.|++..|+...++++.. .-.+++.|+. .
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~l~Ea~~lr~~~~~~~~~~~llg~~-~ 80 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREA-IEAGQRDFGENRVQEALDKAEELPDPDIEWHFIGHL-Q 80 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHH-HHcCCcccCCCcHHHHHHHHHHccCCCceEEEECcc-c
Confidence 468899999999999873 335789999999988888876 47887 8999999999999987543 2234555653 4
Q ss_pred HHHHHHHHh-CCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 173 LEDLVLAAQ-EGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 173 ~~~l~~a~~-~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
+++++.+++ .++.++|||+++++.|.+.+++.+++++|+||||++ ..++|||++++++.++++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvdtG------------~~~~R~G~~~~~~~~~~~~i~~ 148 (222)
T cd00635 81 TNKVKYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIG------------GEESKSGVAPEELEELLEEIAA 148 (222)
T ss_pred cccHHHHHhhCCEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEEecC------------CCCCCCCCCHHHHHHHHHHHHc
Confidence 567888887 588899999999999999998889999999999853 3469999999999999999988
Q ss_pred CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCCEEEecCC
Q 012098 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGG 304 (471)
Q Consensus 252 ~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~l~~ldiGGG 304 (471)
++ ++++.|+|+|. ++..+.+.+.++++.+.++.+.+++. |+.+++||+||.
T Consensus 149 ~~-~l~~~Gi~sh~-s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~is~G~t 200 (222)
T cd00635 149 LP-NLRIRGLMTIA-PLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMS 200 (222)
T ss_pred CC-CCcEEEEEEEC-CCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEECccc
Confidence 87 89999999995 56667788889999999999999887 499999999874
No 47
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.87 E-value=3.1e-22 Score=171.29 Aligned_cols=108 Identities=31% Similarity=0.513 Sum_probs=87.4
Q ss_pred eEEEEEEEEEeeCc-------eeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCC
Q 012098 351 CLVNHVTGVKTNGT-------KNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKEREL 423 (471)
Q Consensus 351 ~lvt~V~~vk~~~~-------~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~l 423 (471)
+|+|+|+++|+..+ .+|+++|+|++....+.+++..+++..+.. ..+.+..+++|+||||++.|++.++..|
T Consensus 1 ~Lvt~Vi~~k~~~~~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~GptC~~~D~i~~~~~l 79 (116)
T PF00278_consen 1 TLVTRVIGVKRRRDSDLKNKKRRWYYVDDGVYGSFDPWLYDHQFPILPLSR-PDEEPCYPSTIWGPTCDSGDVIARDVML 79 (116)
T ss_dssp EEEEEEEEEEEETT---HCTTEEEEEESS-TTTCCHHHHHS----EEEESS-TTTSTEEEEEEEESSSSTTSEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCccccceeeEEEEeCChhhChHHHhhCcCceeeeecc-ccccCcEEEEEEECCcCCCceEeeeccC
Confidence 68999999998765 678889999887777777777666655543 2345678999999999999999999999
Q ss_pred C-CCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 424 P-TPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 424 P-~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
| ++++||||+|.+||||+++++++||++++|++|+|
T Consensus 80 P~~l~~GD~l~f~~~GAYt~~~~~~Fn~~~~p~~v~v 116 (116)
T PF00278_consen 80 PKELEVGDWLVFENMGAYTISLSSNFNGFPRPAEVYV 116 (116)
T ss_dssp ESTTTTT-EEEESS-SSSSGGGSBCGGGT-SCEEEEE
T ss_pred CCCCCCCCEEEEecCcccchhhCccccCCCCCCEEEC
Confidence 9 99999999999999999999999999999999986
No 48
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.87 E-value=1.3e-19 Score=185.96 Aligned_cols=257 Identities=17% Similarity=0.182 Sum_probs=187.6
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcC---CceEEcCHHHHHHHHHCCCCCC--cEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLG---CGAVLVSGNELRLALRAGFDPT--KCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G---~g~~vaS~~El~~a~~~G~~~~--~Ii 165 (471)
.||+.++|+++|++|++.|++.++..+.++++++|++..+.+++.+.+.| .+|.|++..|++.+++.|+... +|+
T Consensus 5 ~tP~l~Idl~al~~Ni~~m~~~~~~~~~~l~phvKaHg~~~ia~~~~~~Ga~~~~~~Vatl~EA~~lr~~G~~~~I~dil 84 (389)
T cd06817 5 PTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDDIL 84 (389)
T ss_pred CCCeEEEEHHHHHHHHHHHHHHHHHcCCceeeeecCcCCHHHHHHHhhCCCCccCEEEecHHHHHHHHHhccccccccEE
Confidence 79999999999999999999987754567999999999999999999988 4899999999999999998543 366
Q ss_pred EeCCCCcHHHHHHHHhC----C-CEEEeCCHHHHHHHHHH-HHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH
Q 012098 166 FNGNGKLLEDLVLAAQE----G-VFVNVDSEFDLENIVVA-SRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~----g-v~i~vDs~~el~~l~~~-a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~ 239 (471)
+..+. .+++++.+++. + +.+.|||.++++.+.+. +...+++++|+|+||.+ ++|.|+.+
T Consensus 85 la~~~-~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvDtG--------------m~R~Gv~~ 149 (389)
T cd06817 85 YGLPV-PPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG--------------THRAGVPP 149 (389)
T ss_pred EECCC-CHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCCceEEEEEEcCC--------------CCcCCCCC
Confidence 65454 55777777665 4 88999999999999987 77778889999999854 99999985
Q ss_pred --hHHHHHHHHHHc-CCCCceEEEEEeecCCCC--CCHHHHH----HHHHHHHHHHHHHHH-cCCCCCEEEecCCCCcCC
Q 012098 240 --EKLQWFLDAVKA-HPNELKLVGAHCHLGSTI--TKVDIFR----DAAVLMVNYIDKIRA-QGFEVDYLNIGGGLGIDY 309 (471)
Q Consensus 240 --~el~~~l~~l~~-~~~~l~l~Glh~H~Gs~~--~~~~~~~----~~~~~~~~~~~~l~~-~g~~l~~ldiGGGl~i~y 309 (471)
+++.++++.+.. .+ ++++.|+++|.|+.. .+.+..+ +..+.+.++.+.+++ .|.+..+++.||. +...
T Consensus 150 ~~~~~~~l~~~i~~~~~-~L~l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~~~vs~GgT-pt~~ 227 (389)
T cd06817 150 ESEDAKELIQKLEKASE-AVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGAT-PTAH 227 (389)
T ss_pred ChHHHHHHHHHHHhhCC-CcEEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCC-cchh
Confidence 357788888887 77 899999999999732 3333333 344556667777776 7888999996654 4322
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEccccee--------------ecccceEEEEEEEEEeeCceeEEEEcCCCC
Q 012098 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSL--------------IANTCCLVNHVTGVKTNGTKNFIVIDGSMA 375 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~l--------------va~ag~lvt~V~~vk~~~~~~~~ivD~g~~ 375 (471)
... .+. .+ +. ...+....+-||-|+ ...|..++++|+++.. .+..+++|+|..
T Consensus 228 ~~~--------~~~-~~-~~-~~~~~~tel~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~p--~~~~~~vdaG~k 294 (389)
T cd06817 228 AAE--------ALV-LI-PA-PSLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVYP--KRNEALVNAGVL 294 (389)
T ss_pred hhc--------ccc-cc-cc-ccCCcceEEccCccccccHHHHhhCCCCHHHeEEEEEEEEEeccC--CCCeEEEecCcc
Confidence 110 000 00 00 000011222333332 4567789999999841 235788999976
Q ss_pred CC
Q 012098 376 EL 377 (471)
Q Consensus 376 ~~ 377 (471)
.+
T Consensus 295 ~l 296 (389)
T cd06817 295 AL 296 (389)
T ss_pred ce
Confidence 54
No 49
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.86 E-value=1.5e-19 Score=185.23 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=180.1
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHH-HcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe
Q 012098 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLR-KLGC-GAVLVSGNELRLALRAGFDPTKCIFN 167 (471)
Q Consensus 90 ~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~-~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~ 167 (471)
.+||..++|+++|++|++.|++.++ .+.+++.++|||++..+++.+. +.|+ ||.|++..|++..++.|.. ..|++.
T Consensus 7 l~TP~l~IDl~al~~Ni~~m~~~~~-~g~~lrphvKa~ky~~~~~~~l~~~Ga~g~~vat~~Eae~l~~~~~~-~dILl~ 84 (379)
T cd06814 7 IGEPTLLLDKDRLDHNIDLLREHLA-GSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPD-ADILLG 84 (379)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHhhC-CCCcEEEEeccccCHHHHHHHHhhCCCCEEEEecHHHHHHHHhcCCC-cCeEEe
Confidence 3799999999999999999999887 4678999999999999999877 6786 9999999999987776543 468777
Q ss_pred CCCCcHHHHHHH----------HhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCC
Q 012098 168 GNGKLLEDLVLA----------AQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237 (471)
Q Consensus 168 g~~k~~~~l~~a----------~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi 237 (471)
.|. ..+.+..+ .+.++.++|||.++++.+.+.+++.+++++|+|+||.+ ++|.|+
T Consensus 85 ~p~-~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~~l~V~lkVDtG--------------m~R~Gv 149 (379)
T cd06814 85 KPM-PVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLTLRINLELDVG--------------LHRGGF 149 (379)
T ss_pred CCC-CcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCCceEEEEEeCCC--------------CCCCCC
Confidence 664 22333222 23567899999999999999988888899999999854 999999
Q ss_pred CHh-HHHHHHHHHHcCCCCceEEEEEeecCCC--CCCH---HHH-H---HHHHHHHHHHHHHHHcCCCCCEEEecCCCCc
Q 012098 238 RNE-KLQWFLDAVKAHPNELKLVGAHCHLGST--ITKV---DIF-R---DAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307 (471)
Q Consensus 238 ~~~-el~~~l~~l~~~~~~l~l~Glh~H~Gs~--~~~~---~~~-~---~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i 307 (471)
.++ ++.++++.+...+ ++++.|+++|-|+. ..+. +.. . +..+.+.+..+.++..|..+.+++.||--..
T Consensus 150 ~~~~~~~~l~~~i~~~~-~l~~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs~GgTpT~ 228 (379)
T cd06814 150 ADPQTLPKALTAIDAPP-RLRFSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHTQKLTLNTGGSPTY 228 (379)
T ss_pred CCHHHHHHHHHHHHhCC-CceEEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCCCccEEecCCCcce
Confidence 865 6888999988887 89999999999862 2322 222 2 2233344444555555899999995543333
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCcEEEEcccc-eeecccceEEEEEEEEEeeCceeEEEEcCCCCCC
Q 012098 308 DYYHTGAVLPKPRNLIDTVREL---VLSRNLNLIIEPGR-SLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAEL 377 (471)
Q Consensus 308 ~y~~~~~~~~~~~~~~~~i~~~---~~~~~~~l~~EpGR-~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~ 377 (471)
.+...... ..+ ++.. +.+... .-|. ....+|..++|+|+++.. ..++++|+|+..+
T Consensus 229 ~~~~~~~~---~tE----~~pGsy~f~D~~~----~~~~~~~~~~Al~v~ttVis~~~---~~~~~~DaG~k~l 288 (379)
T cd06814 229 RLYEGDGP---VNE----VSAGSALVKPTDF----DLPALEDHQPALFIATPVLKVLD---ALEIPGLPGLGRL 288 (379)
T ss_pred EEEcCCCc---ceE----eccccEEEccccc----CcccccCCCceeEEEeeeeeccC---cccCCCcchhhhh
Confidence 33221110 111 1110 000001 1011 125778899999999863 3478899987754
No 50
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.84 E-value=2.5e-19 Score=170.32 Aligned_cols=188 Identities=20% Similarity=0.265 Sum_probs=156.3
Q ss_pred EeHHHHHHHHHHHHHHhcCCCceEEEecccCCc-HHHHHHHH-Hc-CC-ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc
Q 012098 97 YSKPQITRNVEAYKQALEGLNSIIGYAIKANNN-YKILEHLR-KL-GC-GAVLVSGNELRLALRAGFDPTKCIFNGNGKL 172 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~-~~vl~~l~-~~-G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~ 172 (471)
+|+++|++|++.+++.++. ..++++++|+|.+ ..+++.+. .. |+ +|.|++..|+..+++.| .+|++.++ ..
T Consensus 1 Idl~al~~Ni~~~~~~~~~-~~~l~~vvK~~ayg~~~~~~~~~~~~g~~~~~va~~~Ea~~lr~~g---~~il~l~~-~~ 75 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGP-GTKLRAVVKANAYGHGIVRVAKALAEGIDGFAVATLEEAEELREAG---APILVLGP-IP 75 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCT-TSEEEEE-HHHHHTTHHHHHHHHHHHTCSEEEESSHHHHHHHHHTT---SEEEEESE-ST
T ss_pred CCHHHHHHHHHHHHHHcCC-CCEEEEEEcCCCcCccHHHHHHHHhcCCCEEEEeeHHHhhhHHhcC---CceEEEcC-CC
Confidence 6899999999999999944 5679999999764 44555544 33 56 89999999999999999 46766666 46
Q ss_pred HHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC
Q 012098 173 LEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252 (471)
Q Consensus 173 ~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~ 252 (471)
.++++.++++++.++|||.++++.|.+.+++.+++++|+|+||.+ ++|+|+.++++.++++.+++.
T Consensus 76 ~~~~~~~~~~~~~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdtG--------------~~R~G~~~~~~~~l~~~i~~~ 141 (218)
T PF01168_consen 76 PEELEELVEYNIIPTVDSLEQLEALSKAAKKQGKPLKVHLKVDTG--------------MGRLGVRPEELEELAEAIKAL 141 (218)
T ss_dssp GGGHHHHHHTTEEEEE-SHHHHHHHHHHHHHHTSTEEEEEEBESS--------------SSSSSBECHHHHHHHHHHHHT
T ss_pred hhhHHHHhhCcEEEEEchhhHHHHHHHHHHHcCCceEEEEeeccc--------------ccccCCCHHHHHHHHHHHhcC
Confidence 678889988888999999999999999999899999999999854 889999999999999999988
Q ss_pred CCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCC
Q 012098 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304 (471)
Q Consensus 253 ~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGG 304 (471)
+ ++++.|+++|+++........++.++++.++.+.+++.+.+..++++|+.
T Consensus 142 ~-~l~l~Gl~th~~~~d~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~s~g~S 192 (218)
T PF01168_consen 142 P-NLRLEGLMTHFAHADDPDYTNQEQFERFRELAEALEKAGIPPPIVSMGNS 192 (218)
T ss_dssp T-TEEEEEEEEBGSSTTSSCHHHHHHHHHHHHHHHHHHHTTTTCSEEEEEBH
T ss_pred C-CceEeeEeccccccCCHHHHHHHHHHHHHHHHHHHHhccCCCceecCCCC
Confidence 8 89999999999976422223344888899999999988888899999964
No 51
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.75 E-value=2.9e-16 Score=150.01 Aligned_cols=170 Identities=17% Similarity=0.068 Sum_probs=137.1
Q ss_pred ceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHH----HHHCC-CCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCH
Q 012098 118 SIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRL----ALRAG-FDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191 (471)
Q Consensus 118 ~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~----a~~~G-~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~ 191 (471)
.+++.++|+.....|.+.+ ++|+ +|.|++..|+.. .+++| + ...+.|+..+.++...+.++++..+|||.
T Consensus 27 ~~i~aVvKahG~~~v~~~~-~~G~~~fgva~~~Ea~~k~~~Lr~~g~~---~~~~lg~~~~~~~~~~~~~~~~~~~I~s~ 102 (224)
T cd06824 27 VQLLAVSKTKPADAIREAY-AAGQRHFGENYVQEALEKIEALRDLQDI---EWHFIGPIQSNKTKLIAENFDWVHSVDRL 102 (224)
T ss_pred eEEEEEECCCCHHHHHHHH-HcCCcccCcChHHHHHHHHHHhccCCCe---eEEEEcCchhhhHHHHHhhCCEEEecCCH
Confidence 5799999998888998886 8897 899999999996 66665 3 22345775444557777788999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCC
Q 012098 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~ 271 (471)
++++.|.+.+.+.|++++|+|.|+.+ + .++|||++++++.++++.+...+ ++++.|+|+|.++ ..+
T Consensus 103 ~~~~~l~~~a~~~g~~~~v~l~id~~----------~--Gm~R~Gi~~~~~~~~~~~i~~~~-~l~l~Gl~tH~a~-~~~ 168 (224)
T cd06824 103 KIAKRLNDQRPAGLPPLNVCIQVNIS----------G--EDSKSGVAPEDAAELAEAISQLP-NLRLRGLMAIPAP-TDD 168 (224)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEcC----------C--CCCCCCCCHHHHHHHHHHHhcCC-CCcEEEEEEeCCC-CCC
Confidence 99999999998888889999999864 2 38999999988999999888887 9999999999765 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC
Q 012098 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl 305 (471)
.+...+.++.+.++.+.+++.+..+.++++|+.-
T Consensus 169 ~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gnS~ 202 (224)
T cd06824 169 EAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGMSG 202 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcCcH
Confidence 5555566666766677777777888899999754
No 52
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.74 E-value=8.9e-16 Score=146.98 Aligned_cols=170 Identities=19% Similarity=0.090 Sum_probs=139.3
Q ss_pred CceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHH----HHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCH
Q 012098 117 NSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRL----ALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191 (471)
Q Consensus 117 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~----a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~ 191 (471)
+++++.++|+++...+ +.+.+.|+ .|.+++..|+.. .++.| ...+++.|+..++.....+...++..+|||.
T Consensus 28 ~~~l~aV~K~~~~~~i-~~l~~~G~~~fg~~~~~Ea~~k~~~lr~~~--~~~~~~ig~~q~~~~~~~~~~~~l~~~vds~ 104 (229)
T TIGR00044 28 KVKLLAVSKTKPASAI-QIAYDAGQRAFGENYVQELVEKIKLLEDLG--KLEWHFIGPLQSNKDRLVVENFDWVHTIDSL 104 (229)
T ss_pred CeEEEEEECCCCHHHH-HHHHHcCCccccEEcHHHHHHHHHHhcccC--CceEEEECCCcchHHHHHhhhcCEEEEECCH
Confidence 4689999999995554 44888997 899999999966 33344 3478888987676666566677888999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCC
Q 012098 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~ 271 (471)
+.++.|.+.+.+.+++++|+|+||++ +.++|.|+.++++.++++.+..++ ++++.|+++|.+.. .+
T Consensus 105 ~~~~~l~~~a~~~~~~~~V~l~vdtg------------~gm~R~G~~~~e~~~~~~~i~~~~-~l~l~Gl~th~~~~-~~ 170 (229)
T TIGR00044 105 KIAKKLNEQREKLQPPLNVLLQINIS------------DEESKSGIQPEELLELAIQIEELK-HLKLRGLMTIGAPT-DS 170 (229)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEECC------------CCCCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEEeCCCC-CC
Confidence 99999999998889999999999853 348999999988999999998888 99999999999864 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC--CCCEEEecC
Q 012098 272 VDIFRDAAVLMVNYIDKIRAQGF--EVDYLNIGG 303 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~g~--~l~~ldiGG 303 (471)
.+..++.++.+.++.+.+++.+. .+..+++|+
T Consensus 171 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lS~G~ 204 (229)
T TIGR00044 171 HEDQEENFRFMKLLFWQIKQDSPFGTIDTLSMGM 204 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCEEeeeC
Confidence 66667788888888888887664 567888775
No 53
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.69 E-value=5.6e-15 Score=148.21 Aligned_cols=259 Identities=17% Similarity=0.158 Sum_probs=177.8
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
.||+.++|++++.+|+++|++.....+.++.+++|+.+++.+.+.+.+.|. |+.|++..|++....+|+ ++|+|..|
T Consensus 17 ~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl~a~p 94 (368)
T COG3616 17 DTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDILLAYP 94 (368)
T ss_pred CCchhhhhHHHHhhhHHHHHHhccccCceeecccccccCHHHHHHHHhcCCceeEeechHHHHHHHccCc--cceEEecC
Confidence 799999999999999999999998888899999999999999999999996 999999999999999998 58998876
Q ss_pred CCcHHHHHHHHhC----C-CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHH-H
Q 012098 170 GKLLEDLVLAAQE----G-VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKL-Q 243 (471)
Q Consensus 170 ~k~~~~l~~a~~~----g-v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el-~ 243 (471)
......++...+. . +.+.+||.+.++.+.+++...+++++|+|.++.+ .+|.|+...+. .
T Consensus 95 ~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~G--------------~~R~Gv~t~~~~~ 160 (368)
T COG3616 95 LPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPLRVLIEIDSG--------------LHRSGVRTPEVAE 160 (368)
T ss_pred CCchhHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCCC--------------CCccCcCChHHHH
Confidence 5555555433322 2 4578999999999999999999999999999753 78999987544 4
Q ss_pred HHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 244 ~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
.+.+.+...+ ++++.|+++|.|+-....+..... .+ ......++..|....++..||--...+..... ...+
T Consensus 161 ~La~~~~~~~-~l~~~Gv~~y~gh~~~~~~~~~~~-~~-~~a~~~~~~~g~~~~~vt~ggtp~~~~~~~~~---~~~e-- 232 (368)
T COG3616 161 ALAAEIAAAP-GLRLAGVMTYPGHSYGPGSEVAAA-ER-VHAAALLGAVGRAAPVLTSGGTPTAELVAGLS---STTE-- 232 (368)
T ss_pred HHHHhhhhcc-ceEEeeeecccccccCCcchhhhh-hh-hhHHHHhcccCCccceeecCCCCchhhhccCC---ccee--
Confidence 4445555666 999999999998643222222111 11 22233345568889999966543221111000 0000
Q ss_pred HHHHHHHhcCCcEEEEcccce-eecccceEEEEEEEEEeeCceeEEEEcCCCCCCc
Q 012098 324 DTVRELVLSRNLNLIIEPGRS-LIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI 378 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~~EpGR~-lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~ 378 (471)
++...--..-....+.|.. .-+-++++.+.|++.- ...++++|.|...+-
T Consensus 233 --~r~G~Y~~~D~~~~~~g~~s~~d~Al~v~atvis~p---~~~~aivdaG~k~ls 283 (368)
T COG3616 233 --LRAGNYVFNDLVQVAFGIPSLSDGALTVAATVISHP---TPGRAIVDAGSKALS 283 (368)
T ss_pred --eccCceeehhhhhhhhCCCcccccceeeeeEEEecC---CCceeeccCCcccee
Confidence 0000000000011122221 1122778888888876 346889999876653
No 54
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=99.43 E-value=4e-11 Score=114.04 Aligned_cols=171 Identities=16% Similarity=0.070 Sum_probs=131.3
Q ss_pred CceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCC-CCcEEEeCCCCcHHHHHHHHh---CCCEEEeCCH
Q 012098 117 NSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFD-PTKCIFNGNGKLLEDLVLAAQ---EGVFVNVDSE 191 (471)
Q Consensus 117 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~-~~~Ii~~g~~k~~~~l~~a~~---~gv~i~vDs~ 191 (471)
.+++..+.|..+...|.. +.++|+ .|-=.-.+|+..=.+ -++ .-+.+|.|+..+ ..++.+++ ....-+|||+
T Consensus 23 ~v~LvaVsK~~~~~~i~~-~~~~G~~~fGENrvQe~~~K~~-~l~~~i~wHfIG~LQ~-NK~k~i~~~~~~~~ihsvDs~ 99 (227)
T cd06822 23 KPRLVAVSKTKPAELIKE-AYDAGQRHFGENYVQELIEKAP-DLPIDIKWHFIGHLQS-NKVKKLLKVPNLYMVETVDSE 99 (227)
T ss_pred CcEEEEEECCCCHHHHHH-HHHcCCccccCcHHHHHHHHHH-hccCCceEEEECCCch-hhHHHHhccccccEEEecCCH
Confidence 478999999998877644 567886 455555777654322 222 124699999766 45777764 2345799999
Q ss_pred HHHHHHHHHHHHc--CCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH-cCCCCceEEEEEeecCCC
Q 012098 192 FDLENIVVASRIA--GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK-AHPNELKLVGAHCHLGST 268 (471)
Q Consensus 192 ~el~~l~~~a~~~--g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~-~~~~~l~l~Glh~H~Gs~ 268 (471)
+.++.|.+.+.+. +++++|+|.||.+ ++.+|.|++++++.++++.+. .++ ++++.|||+|.|..
T Consensus 100 ~la~~L~~~a~~~~~~~~~~VlIqVn~g------------~e~~K~Gv~~~e~~~l~~~i~~~~~-~L~l~GLMt~~~~~ 166 (227)
T cd06822 100 KLADKLNKAWEKLGEREPLKVMVQVNTS------------GEESKSGLEPSEAVELVKHIIEECP-NLKFSGLMTIGSFG 166 (227)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCC------------CCCCCCCCCHHHHHHHHHHHHhhCC-CceEEEEEeeCCCC
Confidence 9999999999888 8999999999965 457999999999999999996 888 99999999998853
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEecC
Q 012098 269 ITKVDIFRDAAVLMVNYIDKIRAQ-GFE--VDYLNIGG 303 (471)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~l~~~-g~~--l~~ldiGG 303 (471)
....+..++.++.+.++++.|++. |.. +..|++|+
T Consensus 167 ~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGm 204 (227)
T cd06822 167 YSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGM 204 (227)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecc
Confidence 321244577888889999999876 655 68999886
No 55
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.41 E-value=3.4e-11 Score=115.87 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=154.3
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccC-CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN-NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN-~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
.|-.++|++.|++|.+.+++.+..++.++++..|.- .++.+++.+.+.|+ ++..+...|+...+++|.+..-.++-.|
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCcEEEeHHHHHHhHHHHHHHHHHcCCEEEEEEeeccCChHHHHHHHhcCcceeeehhHHHHHHHHHcCCCcCceEeecc
Confidence 577889999999999999999988889999999995 58999999999998 5666679999999999987543445456
Q ss_pred CCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 170 GKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
+ .++++..++.==.+++.+++-+..+.++|.+.|+..+|+++|+.+.- ....+|+..+++++.++.+
T Consensus 83 ~--~sei~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dl-----------reG~~~~~~~~l~~~V~eI 149 (353)
T COG3457 83 C--MSEIEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDL-----------REGQWGFLIEDLEETVEEI 149 (353)
T ss_pred c--HHHHHHHHHhcCeEEEecHHHHHHHHHHHHHhCcceeEEEEEEcccc-----------cCcchhhHHHHHHHHHHHH
Confidence 4 45777777641146778899999999999999999999999986521 1233334458889999999
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHc-CCCCCEEEecCC
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGG 304 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~l~~ldiGGG 304 (471)
..++ ++.++|+-+|+++.-. ...-.+-+..+.+..+++++. |+.++.|+-|..
T Consensus 150 ~~lk-Gi~~vGlgTnF~Cfg~-v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagna 203 (353)
T COG3457 150 QQLK-GIHLVGLGTNFPCFGD-VLPTPENLESLLQGKKKLEASSGIQLKQVSAGNA 203 (353)
T ss_pred hcCC-CceEEeeecccccccC-cCCCcccHHHHHHHHHHHHHhcCceeEEecCCCc
Confidence 9998 9999999999887631 111223445556677777775 999999995543
No 56
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=99.38 E-value=1.4e-10 Score=108.03 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=134.6
Q ss_pred CceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCC---CcEEEeCCCCcHHHHHHHHhC-CCEEEeCCH
Q 012098 117 NSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDP---TKCIFNGNGKLLEDLVLAAQE-GVFVNVDSE 191 (471)
Q Consensus 117 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~---~~Ii~~g~~k~~~~l~~a~~~-gv~i~vDs~ 191 (471)
.+++..+.|+-+...| +.+.++|+ .|.=.-.+|+..=.+. ++. -..+|.|+..+. ..+.++++ ...-+||++
T Consensus 27 ~V~LvAVSK~~~~~~I-~~~~~aG~r~fGENrvQe~~~K~~~-l~~~~~i~WHfIG~LQsN-K~k~v~~~~~~ihSlDr~ 103 (228)
T COG0325 27 SVTLVAVSKTVPAEDI-REAYEAGQRHFGENRVQEALDKIEA-LKDLPDIEWHFIGPLQSN-KVKLVAENFDWIHSLDRL 103 (228)
T ss_pred cEEEEEEeCCCCHHHH-HHHHHcCChhhcchHHHHHHHHHHh-cCcCCCeEEEEechhhhh-HHHHHHhhcceeeecCHH
Confidence 4789999999887665 56678887 3444445666543332 322 246899997664 46777664 455799999
Q ss_pred HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCC
Q 012098 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~ 271 (471)
.-+++|.+.+...+++++|+|.||.+ ++.+|-|++++|+.++++.+.+++ ++++.|||+.. +...|
T Consensus 104 klA~~l~kra~~~~~~l~v~iQVNi~------------~E~sK~G~~~~e~~~~~~~~~~~~-~L~l~GLM~ip-p~~~d 169 (228)
T COG0325 104 KLAKELNKRALELPKPLNVLIQVNIS------------GEESKSGVPPEELDELAQEVQELP-NLELRGLMTIP-PLTDD 169 (228)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEecC------------CccccCCCCHHHHHHHHHHHHhCC-CCeEeEEEeeC-CCCCC
Confidence 99999999888878789999999965 568999999999999999999998 99999999954 56668
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
++.....++.+.++++++.+.+.+++.|++|
T Consensus 170 ~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG 200 (228)
T COG0325 170 PEEIFAVFRKLRKLFDELKAKYPPIDELSMG 200 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCeecCc
Confidence 8888889999999999998887789999987
No 57
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=98.51 E-value=2.4e-06 Score=77.89 Aligned_cols=152 Identities=20% Similarity=0.155 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhcC-----CCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcE--EEeCCCC
Q 012098 100 PQITRNVEAYKQALEG-----LNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKC--IFNGNGK 171 (471)
Q Consensus 100 ~~l~~n~~~~~~a~~~-----~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~I--i~~g~~k 171 (471)
..|+.-+++++++... ..+++..+.|+.|...| ..+.+.|. .|.-.=..|+.. ++-.=|+.| +|.|...
T Consensus 9 ~~L~~v~~rv~qa~~~~~r~~~~~rlvaVSKtKPa~~i-~~~Y~~GqR~FGENYVQEl~e--Kap~lp~DI~WHFIG~lQ 85 (244)
T KOG3157|consen 9 SALRAVIERVQQAVNQRPRDENAVRLVAVSKTKPASLI-IEAYDAGQRHFGENYVQELIE--KAPLLPDDIKWHFIGHLQ 85 (244)
T ss_pred HHHHHHHHHHHHHHHhccccccceEEEEeecCCcHHHH-HHHHHcCcChhhHHHHHHHHH--hcccCcccceeeeechhh
Confidence 5677777777777651 24688999999997655 44456664 343223444432 232222444 8999866
Q ss_pred cHHHHHHHHh-CCCE--EEeCCHHHHHHHHHHHHHcCC--ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH
Q 012098 172 LLEDLVLAAQ-EGVF--VNVDSEFDLENIVVASRIAGK--KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246 (471)
Q Consensus 172 ~~~~l~~a~~-~gv~--i~vDs~~el~~l~~~a~~~g~--~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l 246 (471)
+.+ +..++. .+.. -+||++.-+..+.+...+.|. +++|+|+||++ ++.+|+|+.+.++.+++
T Consensus 86 snK-~kkl~svpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvNTS------------GEd~K~Giepse~~~l~ 152 (244)
T KOG3157|consen 86 SNK-CKKLLSVPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVNTS------------GEDSKSGIEPSEAPELA 152 (244)
T ss_pred hcc-cchhccCCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEeecC------------CccccCCCChhhhHHHH
Confidence 543 444443 3543 369999999999988777777 89999999965 57999999999999999
Q ss_pred HHHHc-CCCCceEEEEEeecCCCC
Q 012098 247 DAVKA-HPNELKLVGAHCHLGSTI 269 (471)
Q Consensus 247 ~~l~~-~~~~l~l~Glh~H~Gs~~ 269 (471)
+.++. ++ ++++.|||+ +||..
T Consensus 153 ~~i~~~c~-nL~f~GlMT-IGs~~ 174 (244)
T KOG3157|consen 153 EHIKSECK-NLKFSGLMT-IGSFD 174 (244)
T ss_pred HHHHHhCC-cceeeeeEE-ecccc
Confidence 98876 76 999999998 67643
No 58
>PF00842 Ala_racemase_C: Alanine racemase, C-terminal domain; InterPro: IPR011079 Alanine racemase (5.1.1.1 from EC) plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins contains this domain are found in both prokaryotic and eukaryotic proteins [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus (Geobacillus stearothermophilus) was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strand. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel.; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process; PDB: 3HUR_A 4A3Q_B 3S46_A 1RCQ_A 3CO8_A 1VFT_B 1VFH_A 1VFS_B 2DY3_B 4ECL_C ....
Probab=96.70 E-value=0.007 Score=52.60 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=48.2
Q ss_pred ceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCC
Q 012098 350 CCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESA 414 (471)
Q Consensus 350 g~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~ 414 (471)
..+-++|+.+|... +..+.++..||++.+...+.+.. + .++ ..+++.|+|.+||
T Consensus 2 ~sl~a~i~~v~~v~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~~~-~-v~i-------~G~~~pivG~v~M-- 70 (129)
T PF00842_consen 2 MSLKARIIQVREVPKGETVGYGRTYRAPRDTRIAVVPIGYADGFPRALSNGG-Y-VLI-------NGKRCPIVGRVCM-- 70 (129)
T ss_dssp EEEEEEEEEEEEE-TT-EESGGGSEE-SSSEEEEEES--GGGTGGGGGTTTE-E-EEE-------TTEEEEEES---S--
T ss_pred EEEEEEEEEEEEeCCCCCCcCCCEEECCCCeEEEEEEEEeeCCcCcccCCCc-E-EEE-------CCEEEEEEEEEEe--
Confidence 46778888888742 23578999999998876666521 1 122 2568999999999
Q ss_pred ceeccCCC-C-CCCCCCCEEEEcCC
Q 012098 415 DFLGKERE-L-PTPDRGAGLVVHDA 437 (471)
Q Consensus 415 D~l~~~~~-l-P~~~~GD~l~~~~~ 437 (471)
|++..++. . |++++||.+.+.+-
T Consensus 71 D~~~vdvt~~~~~v~~GD~V~l~G~ 95 (129)
T PF00842_consen 71 DMTMVDVTDIEPDVKVGDEVTLFGR 95 (129)
T ss_dssp S-EEEEESTSTST--TT-EEEEEEC
T ss_pred eEEEEEcCCCCCCCCCCCEEEEECC
Confidence 89887774 5 67899999999763
No 59
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.42 E-value=15 Score=35.47 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=84.4
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCC-CceEEEeccc------CCcHHHHHHHHHcC--Cce--EEcC-HHHHHHHHHCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGL-NSIIGYAIKA------NNNYKILEHLRKLG--CGA--VLVS-GNELRLALRAGF 159 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~-~~~i~yavKa------N~~~~vl~~l~~~G--~g~--~vaS-~~El~~a~~~G~ 159 (471)
++-..++.+...+-++.+.++ +. ..++.+.... .....+++.+.+.+ ..+ -+-. ..+++.+.++|+
T Consensus 11 ~~~~~~s~e~~~~i~~~L~~~--GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~ 88 (265)
T cd03174 11 SEGATFSTEDKLEIAEALDEA--GVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGV 88 (265)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCc
Confidence 333445666666666666543 11 1233333332 23356777777766 332 2223 788888888887
Q ss_pred CCCcEEEeCC--------CCc----H----HHHHHHHhCCCE--EEe-------CCHHHHHHHHHHHHHcCCceEEEEEE
Q 012098 160 DPTKCIFNGN--------GKL----L----EDLVLAAQEGVF--VNV-------DSEFDLENIVVASRIAGKKVNVLLRI 214 (471)
Q Consensus 160 ~~~~Ii~~g~--------~k~----~----~~l~~a~~~gv~--i~v-------Ds~~el~~l~~~a~~~g~~~~V~lRi 214 (471)
+.-+|.+.+. .++ . +.++.+.+.|+. +++ .+.+++..+.+.+.+.|.. .|.+
T Consensus 89 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~---~i~l 165 (265)
T cd03174 89 DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGAD---EISL 165 (265)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCC---EEEe
Confidence 5444444333 011 1 223444566752 333 6677777777777776643 2334
Q ss_pred ecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 215 NPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 215 n~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
... +| .++++++.++++.+++.-.. ...|+|+|-
T Consensus 166 ~Dt----------~G------~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn 199 (265)
T cd03174 166 KDT----------VG------LATPEEVAELVKALREALPD-VPLGLHTHN 199 (265)
T ss_pred chh----------cC------CcCHHHHHHHHHHHHHhCCC-CeEEEEeCC
Confidence 311 11 25788999999888764313 567788885
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=84.64 E-value=39 Score=33.01 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=80.1
Q ss_pred EEEeHHHHHHHHHHHHHHhcCCC-ceEEEecccCC-cHHHHHHHHHcCC-----ceEEcCHHHHHHHHHCCCCCCcEEEe
Q 012098 95 YLYSKPQITRNVEAYKQALEGLN-SIIGYAIKANN-NYKILEHLRKLGC-----GAVLVSGNELRLALRAGFDPTKCIFN 167 (471)
Q Consensus 95 ~v~d~~~l~~n~~~~~~a~~~~~-~~i~yavKaN~-~~~vl~~l~~~G~-----g~~vaS~~El~~a~~~G~~~~~Ii~~ 167 (471)
..+..++-.+-++.+.++ +.. .++.++ |+++ ....++.+.+.+. .+-.....+++.+.++|++.-+|.+.
T Consensus 17 ~~~s~~~k~~i~~~L~~~--Gv~~IEvG~P-~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~ 93 (262)
T cd07948 17 AFFDTEDKIEIAKALDAF--GVDYIELTSP-AASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDLVFG 93 (262)
T ss_pred CCCCHHHHHHHHHHHHHc--CCCEEEEECC-CCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEe
Confidence 346666666655655542 221 244444 3343 3344555554432 23456788999999999864333332
Q ss_pred C--------CCCcHHH-H-------HHHHhCCCE--EEe-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCc
Q 012098 168 G--------NGKLLED-L-------VLAAQEGVF--VNV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHP 224 (471)
Q Consensus 168 g--------~~k~~~~-l-------~~a~~~gv~--i~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~ 224 (471)
. -+++.++ + +.|.+.|+. +++ ...+.+..+.+.+.+.|.. .|++.
T Consensus 94 ~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~---~i~l~--------- 161 (262)
T cd07948 94 TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN---RVGIA--------- 161 (262)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC---EEEEC---------
Confidence 1 1233333 2 233345764 455 3456666666666665543 13332
Q ss_pred ccccCCCCCCCC-CCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 225 YVATGNKNSKFG-IRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 225 ~~~tg~~~sKfG-i~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
+| +| ..++++.+++..+++.- .+ ..|+|+|-
T Consensus 162 --Dt------~G~~~P~~v~~~~~~~~~~~-~~-~i~~H~Hn 193 (262)
T cd07948 162 --DT------VGIATPRQVYELVRTLRGVV-SC-DIEFHGHN 193 (262)
T ss_pred --Cc------CCCCCHHHHHHHHHHHHHhc-CC-eEEEEECC
Confidence 12 23 46788999998888753 43 45889985
No 61
>PRK06801 hypothetical protein; Provisional
Probab=82.44 E-value=26 Score=34.76 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ |- +++.+++.+..+.++|++.+. .|.|.+.++ ..+| ...+.+..++..+
T Consensus 7 ~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~--PvIl~~~~~--------------~~~~-~~~~~~~~~~~~~ 69 (286)
T PRK06801 7 ANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERS--PFIINIAEV--------------HFKY-ISLESLVEAVKFE 69 (286)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCC--CEEEEeCcc--------------hhhc-CCHHHHHHHHHHH
Confidence 45667777766 43 899999999999999998764 577777643 2233 2345565555554
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHH---HHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNL---IDTV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~---~~~i 326 (471)
.+.. .+ .+.||. -+ ..+.+...+++ +.|++.=++| |.. .| +++- ...+
T Consensus 70 a~~~-~v-pV~lHl--DH-~~~~e~i~~Ai-----------~~GftSVm~D-~S~-----------l~-~eeNi~~t~~v 120 (286)
T PRK06801 70 AARH-DI-PVVLNL--DH-GLHFEAVVRAL-----------RLGFSSVMFD-GST-----------LE-YEENVRQTREV 120 (286)
T ss_pred HHHC-CC-CEEEEC--CC-CCCHHHHHHHH-----------HhCCcEEEEc-CCC-----------CC-HHHHHHHHHHH
Confidence 4332 34 455554 32 22343322221 1355433443 222 22 2332 3345
Q ss_pred HHHHhcCCcEEEEcccc
Q 012098 327 RELVLSRNLNLIIEPGR 343 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR 343 (471)
.+.+..+|+.+..|.|.
T Consensus 121 ~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 121 VKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHHHHcCCeEEeecCc
Confidence 66677889999999998
No 62
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=81.46 E-value=57 Score=32.15 Aligned_cols=33 Identities=6% Similarity=-0.077 Sum_probs=21.9
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCc--eEEEEEeec
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNEL--KLVGAHCHL 265 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l--~l~Glh~H~ 265 (471)
..+|+..++++.++++.+++.- ++ .-.++|+|-
T Consensus 178 P~~~~~~p~~v~~l~~~l~~~~-~~p~~~l~~H~Hn 212 (279)
T cd07947 178 PYPGASLPRSVPKIIYGLRKDC-GVPSENLEWHGHN 212 (279)
T ss_pred ccccccchHHHHHHHHHHHHhc-CCCCceEEEEecC
Confidence 3445666788888888887531 22 246899995
No 63
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=81.19 E-value=44 Score=33.92 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=67.6
Q ss_pred ecccCCcHHHHHHHHHc--CCceEE------cCHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCEEE-----
Q 012098 123 AIKANNNYKILEHLRKL--GCGAVL------VSGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVFVN----- 187 (471)
Q Consensus 123 avKaN~~~~vl~~l~~~--G~g~~v------aS~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~i~----- 187 (471)
-.++.+..+.++.+.+. +..+.+ ++..+++.+.++|++.-||.+...- ...+.++.+.+.|..+.
T Consensus 58 g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 58 GFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 34444455556665443 222221 3678889999999875455443221 11234555566775322
Q ss_pred --eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 188 --VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 188 --vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
.-+.+++..+.+.+.+.|.. .|.+. +|.| .+.++++.+++..+++.-..-.-+|+|+|-
T Consensus 138 a~~~~~e~l~~~a~~~~~~Ga~---~i~i~-----------DT~G-----~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn 198 (337)
T PRK08195 138 SHMAPPEKLAEQAKLMESYGAQ---CVYVV-----------DSAG-----ALLPEDVRDRVRALRAALKPDTQVGFHGHN 198 (337)
T ss_pred ccCCCHHHHHHHHHHHHhCCCC---EEEeC-----------CCCC-----CCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 23556666665555555543 24442 1211 357899999998887531012467999995
No 64
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.04 E-value=8.3 Score=35.25 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCCCC-------CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTIT-------KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~-------~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
+++.++.+.++++ ++.+.+++++...... ..+ ..++++.+.+.++..+..|. +++.+..|- .+....
T Consensus 27 ~~~~~~~~~~~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~--~~i~~~~g~-~~~~~~ 100 (213)
T PF01261_consen 27 DEAEELRRLLEDY--GLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGA--KYIVVHSGR-YPSGPE 100 (213)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTB--SEEEEECTT-ESSSTT
T ss_pred HHHHHHHHHHHHc--CCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCC--CceeecCcc-cccccC
Confidence 4566777777777 7999999987664431 223 45556666666666666664 566666551 100000
Q ss_pred CCCCCCHHHHHHHHH---HHHhcCCcEEEEcccceeec
Q 012098 313 GAVLPKPRNLIDTVR---ELVLSRNLNLIIEPGRSLIA 347 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~---~~~~~~~~~l~~EpGR~lva 347 (471)
.......+.+.+.++ +...++|+++.+||-.....
T Consensus 101 ~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~ 138 (213)
T PF01261_consen 101 DDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS 138 (213)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence 000001233334343 34456899999998665543
No 65
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=79.42 E-value=34 Score=32.72 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=60.6
Q ss_pred cHHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+...++..++.|. .+.+++...+.++.+..++.|.+++++|=+||+ -+.+.+..++..
T Consensus 80 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~-------------------Tp~~~i~~~l~~ 140 (228)
T PRK08091 80 QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPE-------------------TPISLLEPYLDQ 140 (228)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCC-------------------CCHHHHHHHHhh
Confidence 4567777777774 466776667777777778888767889999875 244666555542
Q ss_pred HHcCCCCceEEEEEee-cC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC
Q 012098 249 VKAHPNELKLVGAHCH-LG--STITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H-~G--s~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl 305 (471)
+..+-+++. .| .|.. ....+++..++.+.+.+.+.+. .|-+=||.
T Consensus 141 -------vD~VLiMtV~PGfgGQ~f----~~~~l~KI~~lr~~~~~~~~~~-~IeVDGGI 188 (228)
T PRK08091 141 -------IDLIQILTLDPRTGTKAP----SDLILDRVIQVENRLGNRRVEK-LISIDGSM 188 (228)
T ss_pred -------cCEEEEEEECCCCCCccc----cHHHHHHHHHHHHHHHhcCCCc-eEEEECCC
Confidence 445555654 33 2322 2234445555544444455543 24455665
No 66
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=79.06 E-value=43 Score=33.71 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCEE----Ee-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH
Q 012098 174 EDLVLAAQEGVFV----NV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244 (471)
Q Consensus 174 ~~l~~a~~~gv~i----~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~ 244 (471)
+.++.+.+.|+.+ ++ |+.++++.+.+.+.+.|...-.+-.+.+. .| ...|-++.++..+
T Consensus 218 ~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~----------~g--~~~f~~~~~~~~~ 285 (321)
T TIGR03822 218 AACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHLDLA----------PG--TAHFRVTIEEGQA 285 (321)
T ss_pred HHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEecCCC----------CC--cccccCcHHHHHH
Confidence 4455566678632 34 88999999998887777655444555442 11 4567777777777
Q ss_pred HHHHHHc
Q 012098 245 FLDAVKA 251 (471)
Q Consensus 245 ~l~~l~~ 251 (471)
+++.+.+
T Consensus 286 i~~~l~~ 292 (321)
T TIGR03822 286 LVRALRG 292 (321)
T ss_pred HHHHHHH
Confidence 7776654
No 67
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.94 E-value=49 Score=32.14 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=58.6
Q ss_pred cCHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCE--EEe-----CCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 146 VSGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVF--VNV-----DSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~--i~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
....+++.+.++|++.-+|.+.-.. .-.+.++.+.+.|.. +++ .+.+++..+.+.+.+.|.. .|.+.
T Consensus 86 ~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d---~i~l~- 161 (263)
T cd07943 86 GTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD---CVYVT- 161 (263)
T ss_pred cCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC---EEEEc-
Confidence 3577788888888864444432211 112334455566753 344 3566666666666666643 23442
Q ss_pred CCCCCCCcccccCCCCCCCC-CCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 217 DVDPQVHPYVATGNKNSKFG-IRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 217 ~~~~~~~~~~~tg~~~sKfG-i~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
+| +| +.|+++.++++.+++.- +....|+|+|-
T Consensus 162 ----------DT------~G~~~P~~v~~lv~~l~~~~-~~~~l~~H~Hn 194 (263)
T cd07943 162 ----------DS------AGAMLPDDVRERVRALREAL-DPTPVGFHGHN 194 (263)
T ss_pred ----------CC------CCCcCHHHHHHHHHHHHHhC-CCceEEEEecC
Confidence 11 23 47889999999987643 33467899985
No 68
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=76.91 E-value=49 Score=32.78 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=73.6
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ |- +++.+++.++.+.++|++.+. .|.|.+.++ .-+|....+.+..+++.+
T Consensus 7 ~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~s--PvIiq~~~~--------------~~~~~~~~~~~~~~~~~~ 70 (285)
T PRK07709 7 KEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKS--PVILGVSEG--------------AARHMTGFKTVVAMVKAL 70 (285)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC--CEEEEcCcc--------------hhhhcCCHHHHHHHHHHH
Confidence 45677777766 43 899999999999999988765 567777543 334433344455555544
Q ss_pred HcCCCCc-eEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---H
Q 012098 250 KAHPNEL-KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---T 325 (471)
Q Consensus 250 ~~~~~~l-~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~ 325 (471)
.+.. .. -.+.||.--| .+.+..++++ +.|++-=++| |.- +| +++=++ .
T Consensus 71 a~~~-~~~VPV~lHLDHg---~~~e~i~~ai-----------~~GftSVM~D-gS~-----------lp-~eeNi~~Tre 122 (285)
T PRK07709 71 IEEM-NITVPVAIHLDHG---SSFEKCKEAI-----------DAGFTSVMID-ASH-----------HP-FEENVETTKK 122 (285)
T ss_pred HHHc-CCCCcEEEECCCC---CCHHHHHHHH-----------HcCCCEEEEe-CCC-----------CC-HHHHHHHHHH
Confidence 3321 21 2455554332 3444433332 2355444555 322 22 233233 3
Q ss_pred HHHHHhcCCcEEEEccccee
Q 012098 326 VRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~l 345 (471)
+.+.+...|+.+-.|.|+--
T Consensus 123 vv~~Ah~~gv~VEaElG~ig 142 (285)
T PRK07709 123 VVEYAHARNVSVEAELGTVG 142 (285)
T ss_pred HHHHHHHcCCEEEEEEeccC
Confidence 34445578999999999864
No 69
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=75.38 E-value=44 Score=33.37 Aligned_cols=145 Identities=15% Similarity=0.225 Sum_probs=83.5
Q ss_pred EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCC-CCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDV-DPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 186 i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~-~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
+...++..+.++.+...+.+.. +.|+..+. ...+|+... + +...-...+++.++-+.++++ +++ +.+|
T Consensus 42 ~~~~Nl~~l~~~l~~~~~~~I~---~~R~sS~l~P~~~h~~~~--~-w~~~~~~~~~~~~~g~~~~~~--~ir---ls~H 110 (303)
T PRK02308 42 IALSNLENLLRILKYNIAHGIG---LFRLSSSLIPLATHPELE--G-WDYIEPFKEELREIGEFIKEH--NIR---LSFH 110 (303)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC---EEEcccCcCCCCCChhhc--c-cCCCCCCHHHHHHHHHHHHHc--CCC---eecc
Confidence 3446777888888877766643 47876543 122333111 0 222334456777777777776 454 5678
Q ss_pred cCCCC----CCHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHhcCCcEE
Q 012098 265 LGSTI----TKVDIFRDAAVLMVNYIDKIRAQGFE---VDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNL 337 (471)
Q Consensus 265 ~Gs~~----~~~~~~~~~~~~~~~~~~~l~~~g~~---l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l 337 (471)
.+..+ .+++.+...+..+..-++.+...|.+ .=+|+.||..+ +.. ...+.+.+.+.++....+.+|
T Consensus 111 p~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~~----~ke---~al~r~~~~l~~l~~~~~~~L 183 (303)
T PRK02308 111 PDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAYG----DKE---KALERFIENIKKLPESIKKRL 183 (303)
T ss_pred ChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccCC----CHH---HHHHHHHHHHHHhhHHhCCEE
Confidence 65322 35667777788888878777778876 44567776431 111 124455556655544445678
Q ss_pred EEcc--cceeecc
Q 012098 338 IIEP--GRSLIAN 348 (471)
Q Consensus 338 ~~Ep--GR~lva~ 348 (471)
.+|- |.+-+.+
T Consensus 184 ~LEN~~~~~t~~e 196 (303)
T PRK02308 184 TLENDDKTYTVEE 196 (303)
T ss_pred EEeeCCCCCCHHH
Confidence 8875 4444443
No 70
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=75.35 E-value=1e+02 Score=31.87 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=77.5
Q ss_pred EEeHHHHHHHHHHHHHHhcCCC-ceEEEecccCCcHHHHHHHHHcCCceEEc-----CHHHHHHHHHCCCCCCcEEEeCC
Q 012098 96 LYSKPQITRNVEAYKQALEGLN-SIIGYAIKANNNYKILEHLRKLGCGAVLV-----SGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 96 v~d~~~l~~n~~~~~~a~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g~~va-----S~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
-++.++..+-++.+-++ +.. .++.++.-+....++++.+.+.|....+. ....++.+.++|++ .|.+..+
T Consensus 22 ~~s~e~k~~ia~~L~~~--GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~--~i~i~~~ 97 (378)
T PRK11858 22 VFTNEEKLAIARMLDEI--GVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVD--AVHIFIA 97 (378)
T ss_pred CCCHHHHHHHHHHHHHh--CCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcC--EEEEEEc
Confidence 34555544444444332 221 24555554444446777777766533222 27788888888875 3422222
Q ss_pred CCc----------H----H----HHHHHHhCCCEE--Ee-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCc
Q 012098 170 GKL----------L----E----DLVLAAQEGVFV--NV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHP 224 (471)
Q Consensus 170 ~k~----------~----~----~l~~a~~~gv~i--~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~ 224 (471)
..+ . + .++.|.+.|..+ .. .+.+.+..+.+.+.+.|.. .|++.
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~---~I~l~--------- 165 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGAD---RVRFC--------- 165 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCC---EEEEe---------
Confidence 111 1 1 233445567543 32 3455666666666666543 23442
Q ss_pred ccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 225 ~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
+|. -...|+++.++++.+++.- ++ ..|+|+|--
T Consensus 166 --DT~-----G~~~P~~v~~lv~~l~~~~-~~-~l~~H~Hnd 198 (378)
T PRK11858 166 --DTV-----GILDPFTMYELVKELVEAV-DI-PIEVHCHND 198 (378)
T ss_pred --ccC-----CCCCHHHHHHHHHHHHHhc-CC-eEEEEecCC
Confidence 121 1357889999988887642 33 578999853
No 71
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.41 E-value=25 Score=34.17 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=56.7
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEe--ecCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHC--HLGS--TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYY 310 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~--H~Gs--~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~ 310 (471)
.+++.+++.++.+.++++ ++.+.++++ |..- ...+.+...++++.+.+.++..+..|. ++|.++|+ ...+.
T Consensus 47 ~~~~~~~~~~l~~~l~~~--Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~~-~~~~~ 121 (284)
T PRK13210 47 LDWSKEERLSLVKAIYET--GVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGI--RTIQLAGY-DVYYE 121 (284)
T ss_pred ccCCHHHHHHHHHHHHHc--CCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCc-ccccc
Confidence 344556777777777777 788887653 2110 123455556666667777766666665 56666543 21111
Q ss_pred CCCCCCCCHHHHHHHHHH---HHhcCCcEEEEccc
Q 012098 311 HTGAVLPKPRNLIDTVRE---LVLSRNLNLIIEPG 342 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~---~~~~~~~~l~~EpG 342 (471)
. .. ....+.+.+.+++ ...++|+++.+|+-
T Consensus 122 ~-~~-~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 122 E-KS-EETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred c-cc-HHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 1 10 0123344444444 44568999999983
No 72
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=74.00 E-value=53 Score=32.37 Aligned_cols=102 Identities=21% Similarity=0.292 Sum_probs=50.8
Q ss_pred eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCC-CCCcccccCCCCCCCCCCH-----hHHHHHHHHHHcCCCCceEEEE
Q 012098 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDP-QVHPYVATGNKNSKFGIRN-----EKLQWFLDAVKAHPNELKLVGA 261 (471)
Q Consensus 188 vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~-~~~~~~~tg~~~sKfGi~~-----~el~~~l~~l~~~~~~l~l~Gl 261 (471)
..|++.+.++.+...+.|.. +.||..+.-+ .+|+ ..|.+. +++.++-+.++++ ++++
T Consensus 41 ~~Nl~~l~~~L~~n~~~~I~---~yRisS~liP~ashp---------~~~~~~~~~~~~~l~~iG~~~~~~--~iRl--- 103 (275)
T PF03851_consen 41 RQNLEDLLRILEYNIAHGIR---FYRISSDLIPLASHP---------EVGWDWEEEFAEELAEIGDLAKEN--GIRL--- 103 (275)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTST---------T--S-HHHHHHHHHHHHHHHHHHT--T-EE---
T ss_pred HHHHHHHHHHHHHHHHcCCC---EEecCcccCCCCCCc---------ccccchHHHHHHHHHHHHHHHHHc--CCeE---
Confidence 35677777888777666533 5888754321 1121 344543 2344444455566 6774
Q ss_pred EeecCCCC----CCHHHHHHHHHHHHHHHHHHHHcCCCCC-----EEEecCCCC
Q 012098 262 HCHLGSTI----TKVDIFRDAAVLMVNYIDKIRAQGFEVD-----YLNIGGGLG 306 (471)
Q Consensus 262 h~H~Gs~~----~~~~~~~~~~~~~~~~~~~l~~~g~~l~-----~ldiGGGl~ 306 (471)
.+|.|... .+.+....+++.+.--.+.|...|..-. .|++||.+|
T Consensus 104 s~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~Yg 157 (275)
T PF03851_consen 104 SMHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYG 157 (275)
T ss_dssp EE---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS
T ss_pred EecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCC
Confidence 78998542 4566777777777666666667777655 788888775
No 73
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=73.32 E-value=35 Score=34.74 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=33.2
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
..+.|..|.+.| |. +++.+++.++.+.++|++.+. .|.|.+.++
T Consensus 9 ~k~~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~s--PVIlq~s~~ 55 (350)
T PRK09197 9 YQEMFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKS--PVIIQFSNG 55 (350)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCC--CEEEEcChh
Confidence 345667777766 43 899999999999999988765 567777643
No 74
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=73.00 E-value=43 Score=29.19 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=35.1
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~ 308 (471)
+++++ ++.+++. +..++|++...++.. . .+.++.+.|++.|..-..+=+||+..++
T Consensus 40 ~~e~~---v~aa~~~--~adiVglS~l~~~~~---~-------~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 40 PQEEF---IKAAIET--KADAILVSSLYGHGE---I-------DCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred CHHHH---HHHHHHc--CCCEEEEecccccCH---H-------HHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 45555 4555555 578999998886542 1 2334566777777754456678776553
No 75
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=72.96 E-value=40 Score=29.18 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=46.2
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP 317 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~ 317 (471)
+++++ ++.+.+. +..++|++...++.. ..+.++.+.|++.|..--.+=+||++.++-.
T Consensus 38 ~~e~~---v~aa~~~--~adiVglS~L~t~~~----------~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~------- 95 (128)
T cd02072 38 PQEEF---IDAAIET--DADAILVSSLYGHGE----------IDCKGLREKCDEAGLKDILLYVGGNLVVGKQ------- 95 (128)
T ss_pred CHHHH---HHHHHHc--CCCEEEEeccccCCH----------HHHHHHHHHHHHCCCCCCeEEEECCCCCChh-------
Confidence 44554 4555555 578999998887643 1233455677777763234667888766421
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcccc
Q 012098 318 KPRNLIDTVRELVLSRNLNLIIEPGR 343 (471)
Q Consensus 318 ~~~~~~~~i~~~~~~~~~~l~~EpGR 343 (471)
+..+. .+.+...|+.-++.||-
T Consensus 96 d~~~~----~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 96 DFEDV----EKRFKEMGFDRVFAPGT 117 (128)
T ss_pred hhHHH----HHHHHHcCCCEEECcCC
Confidence 11111 22334567777777775
No 76
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=72.76 E-value=32 Score=33.57 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=59.1
Q ss_pred CCCCCHhHHHHHHHHHHcCCCCceEEEEEeec--C-C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCC
Q 012098 234 KFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL--G-S-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309 (471)
Q Consensus 234 KfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~--G-s-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y 309 (471)
..+.+.+++.++.+.++++ ++.+.++.+-. . . ...+.+..++.++.+.+.++..+..|. +++-++|+ ...+
T Consensus 46 ~~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~~-~~~~ 120 (279)
T TIGR00542 46 RLDWSREQRLALVNAIIET--GVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGI--RTIQLAGY-DVYY 120 (279)
T ss_pred ccCCCHHHHHHHHHHHHHc--CCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCC--CEEEecCc-cccc
Confidence 3456777888888888887 78888775311 0 0 112455555666677777777777776 45666653 1222
Q ss_pred CCCCCCCCCHHHHHHHHHH---HHhcCCcEEEEcc
Q 012098 310 YHTGAVLPKPRNLIDTVRE---LVLSRNLNLIIEP 341 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~---~~~~~~~~l~~Ep 341 (471)
... .....+.+.+.+++ ...++|+++.+|+
T Consensus 121 ~~~--~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 121 EEH--DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred CcC--CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 111 01123344444444 4457899999996
No 77
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.70 E-value=31 Score=33.60 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCCCCHhHHHHHHHHHHcCCCCceEEEEEe--ecCC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCC
Q 012098 234 KFGIRNEKLQWFLDAVKAHPNELKLVGAHC--HLGS--TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309 (471)
Q Consensus 234 KfGi~~~el~~~l~~l~~~~~~l~l~Glh~--H~Gs--~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y 309 (471)
..+.+.+++.++.+.++++ ++.+.++.+ |..- ...+.+..+++++.+.+.++..+..|. ++|.++|+. .++
T Consensus 51 ~~~~~~~~~~~l~~~l~~~--gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~i~~~~~~-~~~ 125 (283)
T PRK13209 51 RLDWSREQRLALVNALVET--GFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGI--RVIQLAGYD-VYY 125 (283)
T ss_pred ccCCCHHHHHHHHHHHHHc--CCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECCcc-ccc
Confidence 3455667777777777777 788877653 3210 112444445566666677776666665 477777542 122
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 310 YHTGAVLPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
.... ....+.+.+.++++ ..++|+.+.+|+-
T Consensus 126 ~~~~--~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 126 EQAN--NETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred cccH--HHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 1100 01123334444443 3468999999985
No 78
>PRK00208 thiG thiazole synthase; Reviewed
Probab=70.33 E-value=81 Score=30.50 Aligned_cols=101 Identities=16% Similarity=0.203 Sum_probs=62.5
Q ss_pred cCHHHHHHhcCCCcEE---EEe-----HHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceE-------
Q 012098 80 VRVQDVMETVEKRPFY---LYS-----KPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAV------- 144 (471)
Q Consensus 80 i~l~~l~~~~~~tP~~---v~d-----~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~------- 144 (471)
+.+..++++..++++. |+. ++.+.+.+++-+...++ ++.+++ =++.++..++.+.+.|+.+-
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~-Gf~vlp--yc~~d~~~ak~l~~~G~~~vmPlg~pI 155 (250)
T PRK00208 79 VRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFVVLP--YCTDDPVLAKRLEEAGCAAVMPLGAPI 155 (250)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHC-CCEEEE--EeCCCHHHHHHHHHcCCCEeCCCCcCC
Confidence 7777888886678875 332 44455555555554444 555551 25677888899988876332
Q ss_pred -----EcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE
Q 012098 145 -----LVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185 (471)
Q Consensus 145 -----vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~ 185 (471)
+....-++.+.+. . .-.++..|...++++...+++.|..
T Consensus 156 Gsg~gi~~~~~i~~i~e~-~-~vpVIveaGI~tpeda~~AmelGAd 199 (250)
T PRK00208 156 GSGLGLLNPYNLRIIIEQ-A-DVPVIVDAGIGTPSDAAQAMELGAD 199 (250)
T ss_pred CCCCCCCCHHHHHHHHHh-c-CCeEEEeCCCCCHHHHHHHHHcCCC
Confidence 2344445555543 2 2246666666788888888888763
No 79
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=70.28 E-value=35 Score=32.25 Aligned_cols=82 Identities=26% Similarity=0.300 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe--CCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHc-
Q 012098 130 YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFN--GNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIA- 204 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~--g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~- 204 (471)
...++.+.+.|+ |+-|++++.+..+++.+.+- .|+.. -+......++...+.|+. +++..+=.++.|.++++..
T Consensus 5 ~~~l~~l~~~g~dgi~v~~~g~~~~~k~~~~~~-~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~~~~ 83 (233)
T PF01136_consen 5 EKYLDKLKELGVDGILVSNPGLLELLKELGPDL-KIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAENSP 83 (233)
T ss_pred HHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCC-cEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHHhCC
Confidence 356777888887 89999999999999986543 34332 234567788888888973 6655444444444444444
Q ss_pred CCceEEEE
Q 012098 205 GKKVNVLL 212 (471)
Q Consensus 205 g~~~~V~l 212 (471)
+.++.+.+
T Consensus 84 ~~~~Ev~v 91 (233)
T PF01136_consen 84 GVPLEVIV 91 (233)
T ss_pred CCeEEEEE
Confidence 33344433
No 80
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=69.71 E-value=28 Score=28.77 Aligned_cols=80 Identities=24% Similarity=0.142 Sum_probs=50.7
Q ss_pred cCCcHHHHHHH-HHcCCceEEcCHHHHHHHHHCCCCCCcEEEeC-CCCcHHHHHHHHhCCCEEEe-----CCHHHHHHHH
Q 012098 126 ANNNYKILEHL-RKLGCGAVLVSGNELRLALRAGFDPTKCIFNG-NGKLLEDLVLAAQEGVFVNV-----DSEFDLENIV 198 (471)
Q Consensus 126 aN~~~~vl~~l-~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g-~~k~~~~l~~a~~~gv~i~v-----Ds~~el~~l~ 198 (471)
+++++.-.+.+ .+.|+. ...|..|+.... . ++-++... +..-.+.+..+++.|+.+.+ .+++|+++|.
T Consensus 32 ~d~~~~~~~~~~~~~~~~-~~~~~~~ll~~~--~--~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~ 106 (120)
T PF01408_consen 32 CDPDPERAEAFAEKYGIP-VYTDLEELLADE--D--VDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELV 106 (120)
T ss_dssp ECSSHHHHHHHHHHTTSE-EESSHHHHHHHT--T--ESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHH
T ss_pred EeCCHHHHHHHHHHhccc-chhHHHHHHHhh--c--CCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHH
Confidence 34555444443 345655 555666665422 2 34444444 43445677888999986554 5999999999
Q ss_pred HHHHHcCCceEE
Q 012098 199 VASRIAGKKVNV 210 (471)
Q Consensus 199 ~~a~~~g~~~~V 210 (471)
+.+++.|..+.|
T Consensus 107 ~~a~~~~~~~~V 118 (120)
T PF01408_consen 107 EAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHTSCEEE
T ss_pred HHHHHhCCEEEE
Confidence 999998876554
No 81
>PRK14057 epimerase; Provisional
Probab=68.81 E-value=91 Score=30.33 Aligned_cols=103 Identities=11% Similarity=0.071 Sum_probs=56.7
Q ss_pred cHHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCc-------eEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH
Q 012098 172 LLEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKK-------VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK 241 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~-------~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e 241 (471)
+...++..++.|. .+.+|....+.+..+..++.|.+ .+.+|=+||+ -+.+.
T Consensus 87 P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~-------------------Tp~e~ 147 (254)
T PRK14057 87 QWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPA-------------------TPLDV 147 (254)
T ss_pred HHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCC-------------------CCHHH
Confidence 4566777777774 35667555666666666777753 5688888875 24456
Q ss_pred HHHHHHHHHcCCCCceEEEEEee-cC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCH-LG--STITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H-~G--s~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl 305 (471)
+..++.. +..+-+++- .| .|. .....+++..++.+.+.+.+.+. .|-+=||.
T Consensus 148 i~~~l~~-------vD~VLvMtV~PGfgGQ~----Fi~~~l~KI~~lr~~~~~~~~~~-~IeVDGGI 202 (254)
T PRK14057 148 IIPILSD-------VEVIQLLAVNPGYGSKM----RSSDLHERVAQLLCLLGDKREGK-IIVIDGSL 202 (254)
T ss_pred HHHHHHh-------CCEEEEEEECCCCCchh----ccHHHHHHHHHHHHHHHhcCCCc-eEEEECCC
Confidence 6555542 445556654 33 232 22334445555544444445432 24444665
No 82
>PRK12677 xylose isomerase; Provisional
Probab=68.77 E-value=45 Score=34.52 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEe----e----cCCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEe-cCCCCcCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHC----H----LGST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI-GGGLGIDYYH 311 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~----H----~Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldi-GGGl~i~y~~ 311 (471)
+.++.+.+++. ++++.++.. | .|+- ..+.+.-+.+++.+.+.++..++.|.+. +.+ +|.-|.+|..
T Consensus 69 ~~~lk~~l~~~--GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~--Vvv~~G~~g~~~~~ 144 (384)
T PRK12677 69 IKRFKKALDET--GLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKT--YVMWGGREGAEYDA 144 (384)
T ss_pred HHHHHHHHHHc--CCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCE--EEEeeCCCCccCcc
Confidence 55666666666 788887732 2 1222 2244444556777777777777777643 444 3333444432
Q ss_pred CCCCCCCHHHHHHHHHHHHh---c--CCcEEEEccc
Q 012098 312 TGAVLPKPRNLIDTVRELVL---S--RNLNLIIEPG 342 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~---~--~~~~l~~EpG 342 (471)
.......++.+.+.++.++. + +++++.+||=
T Consensus 145 ~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 145 AKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 21100112334455555443 3 4599999994
No 83
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.42 E-value=97 Score=29.95 Aligned_cols=101 Identities=17% Similarity=0.205 Sum_probs=60.0
Q ss_pred cCHHHHHHhcCCCcEE---EEe-----HHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceE-------
Q 012098 80 VRVQDVMETVEKRPFY---LYS-----KPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAV------- 144 (471)
Q Consensus 80 i~l~~l~~~~~~tP~~---v~d-----~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~------- 144 (471)
+.+.+|+++..++++. |+. ++.+.+.+++-+...++ ++.+++ =++.++..++.+.+.|+.+-
T Consensus 79 v~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~-Gf~vlp--yc~dd~~~ar~l~~~G~~~vmPlg~pI 155 (248)
T cd04728 79 VRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKE-GFTVLP--YCTDDPVLAKRLEDAGCAAVMPLGSPI 155 (248)
T ss_pred HHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHC-CCEEEE--EeCCCHHHHHHHHHcCCCEeCCCCcCC
Confidence 7777888886677764 332 33344444544444443 555551 25677888999988876332
Q ss_pred -----EcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE
Q 012098 145 -----LVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185 (471)
Q Consensus 145 -----vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~ 185 (471)
+....-++.+++. .+ -.++..|...++++...+++.|..
T Consensus 156 Gsg~Gi~~~~~I~~I~e~-~~-vpVI~egGI~tpeda~~AmelGAd 199 (248)
T cd04728 156 GSGQGLLNPYNLRIIIER-AD-VPVIVDAGIGTPSDAAQAMELGAD 199 (248)
T ss_pred CCCCCCCCHHHHHHHHHh-CC-CcEEEeCCCCCHHHHHHHHHcCCC
Confidence 2244444444443 22 246666666778888888887753
No 84
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=68.37 E-value=1.4e+02 Score=30.26 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=40.4
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecC-------CCCC-------CHHHHHHHH-HHHHHHHHHHHHcCCCCCEEEec
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLG-------STIT-------KVDIFRDAA-VLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~G-------s~~~-------~~~~~~~~~-~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
+.+...++++++++. ++++. |-||.. .|.. +.+...+++ ....+++..|++.|..++++-||
T Consensus 56 ~~~~~~~~akrak~~--Gm~vl-ldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVG 132 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVL-LDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVG 132 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEE-EEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEES
T ss_pred CHHHHHHHHHHHHHC--CCeEE-EeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeC
Confidence 467888888999988 67765 788873 2321 223333333 33567788889999999999999
Q ss_pred CC
Q 012098 303 GG 304 (471)
Q Consensus 303 GG 304 (471)
.-
T Consensus 133 NE 134 (332)
T PF07745_consen 133 NE 134 (332)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 85
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.98 E-value=1.2e+02 Score=29.31 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=71.7
Q ss_pred EeHHHHHHHHHHHHHHhcCCC-ceEEEecccCCcHHHHHHHHHcCC--ceE--E-cCHHHHHHHHHCCCCCCcEEEeCC-
Q 012098 97 YSKPQITRNVEAYKQALEGLN-SIIGYAIKANNNYKILEHLRKLGC--GAV--L-VSGNELRLALRAGFDPTKCIFNGN- 169 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~~~~-~~i~yavKaN~~~~vl~~l~~~G~--g~~--v-aS~~El~~a~~~G~~~~~Ii~~g~- 169 (471)
++.+...+-++.+-++ ++. .++.++.......++++.+.+.+- .+. + .....++.+.++|++.-++.+...
T Consensus 17 ~~~~~k~~i~~~L~~~--Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~ 94 (259)
T cd07939 17 FSREEKLAIARALDEA--GVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSD 94 (259)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCH
Confidence 4444444444444331 111 244444443334456676666432 222 2 346677777778775322222111
Q ss_pred -------CCcH--------HHHHHHHhCCCEE--Ee-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccc
Q 012098 170 -------GKLL--------EDLVLAAQEGVFV--NV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVA 227 (471)
Q Consensus 170 -------~k~~--------~~l~~a~~~gv~i--~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~ 227 (471)
+++. +.++.|.+.|..+ ++ -+.+.+..+.+.+.+.|.. .|.+. +
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~i~l~-----------D 160 (259)
T cd07939 95 IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD---RLRFA-----------D 160 (259)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC---EEEeC-----------C
Confidence 0111 1233444567532 22 2245555555555555543 23442 1
Q ss_pred cCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 228 TGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 228 tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
|.| .+.++++.+++..+++.- .+ -.|+|+|--
T Consensus 161 T~G-----~~~P~~v~~lv~~l~~~~-~~-~l~~H~Hn~ 192 (259)
T cd07939 161 TVG-----ILDPFTTYELIRRLRAAT-DL-PLEFHAHND 192 (259)
T ss_pred CCC-----CCCHHHHHHHHHHHHHhc-CC-eEEEEecCC
Confidence 211 346889999999887643 33 569999953
No 86
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=66.70 E-value=40 Score=32.59 Aligned_cols=96 Identities=13% Similarity=0.158 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCC-----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGST-----ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~-----~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
.++.++.+.++++ ++.+.+++.+.++. ..+.+..++.++.+.+.++..+..|.+ .|-+..|.. .|.....
T Consensus 47 ~~~~~l~~~~~~~--gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~--~i~~~~~~~-~~~~~~~ 121 (275)
T PRK09856 47 GGIKQIKALAQTY--QMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAG--YTLISAAHA-GYLTPPN 121 (275)
T ss_pred hHHHHHHHHHHHc--CCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEcCCCC-CCCCCHH
Confidence 4556666666666 78988876532211 123344455566666666666666654 455544421 1211100
Q ss_pred CCCCHHHHHHHH---HHHHhcCCcEEEEccc
Q 012098 315 VLPKPRNLIDTV---RELVLSRNLNLIIEPG 342 (471)
Q Consensus 315 ~~~~~~~~~~~i---~~~~~~~~~~l~~EpG 342 (471)
...+.+.+.+ .+...++|+++.+||-
T Consensus 122 --~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 122 --VIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 1123333444 4445578999999983
No 87
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=66.30 E-value=80 Score=31.38 Aligned_cols=131 Identities=18% Similarity=0.239 Sum_probs=65.4
Q ss_pred HhCCCE-E---EeCCHHHHHHHHHHHHH----cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 180 AQEGVF-V---NVDSEFDLENIVVASRI----AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 180 ~~~gv~-i---~vDs~~el~~l~~~a~~----~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
++-|+. + ++-+..+++....++++ .|.++.|.+-..... +| ....|-+++++ +..++.
T Consensus 153 i~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~---------sG--~tl~Gq~~~a~---~~~l~~ 218 (311)
T COG0646 153 IDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITD---------SG--RTLSGQTIEAF---LNSLEH 218 (311)
T ss_pred HhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEec---------Cc--eecCCCcHHHH---HHHhhc
Confidence 345653 4 44555555554444443 455667777665431 23 45567666555 455555
Q ss_pred CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHh
Q 012098 252 HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL 331 (471)
Q Consensus 252 ~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~ 331 (471)
. +...+|+-|++|. +..+..++.+.+..+..-..-++...-|..|+= +-|. .+++.+.+.++.+..
T Consensus 219 ~--~~~~vGlNCa~Gp-----~~m~~~l~~ls~~~~~~vs~~PNAGLP~~~g~~-~~Y~------~~p~~~a~~~~~f~~ 284 (311)
T COG0646 219 L--GPDAVGLNCALGP-----DEMRPHLRELSRIADAFVSVYPNAGLPNAFGER-AVYD------LTPEYMAEALAEFAE 284 (311)
T ss_pred c--CCcEEeeccccCH-----HHHHHHHHHHHhccCceEEEeCCCCCCcccCCc-cccC------CCHHHHHHHHHHHHH
Confidence 5 5889999999983 444444443333222111111111122222220 1122 246777777777665
Q ss_pred cCCcEEE
Q 012098 332 SRNLNLI 338 (471)
Q Consensus 332 ~~~~~l~ 338 (471)
+.+++|+
T Consensus 285 ~g~vnIv 291 (311)
T COG0646 285 EGGVNIV 291 (311)
T ss_pred hCCceee
Confidence 5445543
No 88
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.11 E-value=1.1e+02 Score=30.18 Aligned_cols=126 Identities=20% Similarity=0.206 Sum_probs=70.2
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ |. +++.+++.++.+.++|++.+. .|.|.+.++ ..+| ...+.+..++..+
T Consensus 7 k~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~s--PvIlq~~~~--------------~~~~-~g~~~~~~~~~~~ 69 (284)
T PRK12857 7 AELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKS--PVIIQASQG--------------AIKY-AGIEYISAMVRTA 69 (284)
T ss_pred HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEechh--------------Hhhh-CCHHHHHHHHHHH
Confidence 35566777665 43 899999999999999998764 567777643 1122 1233444434433
Q ss_pred -HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH---
Q 012098 250 -KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT--- 325 (471)
Q Consensus 250 -~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~--- 325 (471)
++. .+ .+.||. -+ ..+.+..+.+++ .|++-=++| |.-+ | +++=++.
T Consensus 70 A~~~--~V-PValHL--DH-~~~~e~i~~ai~-----------~GftSVM~D-gS~l-----------p-~eeNi~~T~~ 119 (284)
T PRK12857 70 AEKA--SV-PVALHL--DH-GTDFEQVMKCIR-----------NGFTSVMID-GSKL-----------P-LEENIALTKK 119 (284)
T ss_pred HHHC--CC-CEEEEC--CC-CCCHHHHHHHHH-----------cCCCeEEEe-CCCC-----------C-HHHHHHHHHH
Confidence 333 33 444554 32 234443333321 355444555 3322 2 2333333
Q ss_pred HHHHHhcCCcEEEEccccee
Q 012098 326 VRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~l 345 (471)
+.+.+...|+.+-.|.|+--
T Consensus 120 vv~~Ah~~gvsVEaElG~vg 139 (284)
T PRK12857 120 VVEIAHAVGVSVEAELGKIG 139 (284)
T ss_pred HHHHHHHcCCEEEEEeeecC
Confidence 33445578999999999854
No 89
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=65.62 E-value=1.7e+02 Score=30.05 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=64.4
Q ss_pred eEEEecccCCcHHHHHHHHHcCCceE-----EcCHHHHHHHHHCCCCCCcEEEeCC--------CCcH--------HHHH
Q 012098 119 IIGYAIKANNNYKILEHLRKLGCGAV-----LVSGNELRLALRAGFDPTKCIFNGN--------GKLL--------EDLV 177 (471)
Q Consensus 119 ~i~yavKaN~~~~vl~~l~~~G~g~~-----vaS~~El~~a~~~G~~~~~Ii~~g~--------~k~~--------~~l~ 177 (471)
++.++.......+.++.+.+.+.... -.....++.+.++|++.-+|.+... .++. +.++
T Consensus 40 EvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~ 119 (363)
T TIGR02090 40 EAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVE 119 (363)
T ss_pred EEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444443333445555555553222 2257777777777775322222110 1122 1233
Q ss_pred HHHhCCCE--EEe-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 178 LAAQEGVF--VNV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 178 ~a~~~gv~--i~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
.|.+.|.. +.+ .+.+.+..+.+.+.+.|.. .|++. +|. -...|+++.++++.++
T Consensus 120 ~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~---~i~l~-----------DT~-----G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 120 YAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGAD---RINIA-----------DTV-----GVLTPQKMEELIKKLK 180 (363)
T ss_pred HHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCC---EEEEe-----------CCC-----CccCHHHHHHHHHHHh
Confidence 44456753 333 2345555555555555543 23332 121 1357889999999887
Q ss_pred cCCCCceEEEEEeec
Q 012098 251 AHPNELKLVGAHCHL 265 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~ 265 (471)
+.- . ...|+|+|-
T Consensus 181 ~~~-~-~~l~~H~Hn 193 (363)
T TIGR02090 181 ENV-K-LPISVHCHN 193 (363)
T ss_pred ccc-C-ceEEEEecC
Confidence 643 3 457888885
No 90
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=65.47 E-value=1.2e+02 Score=30.08 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=32.2
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
.+.|..|.+.+ |. +++.+++.++.+.++|++.+. .|.|.+.+
T Consensus 7 ~~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~s--PvIlq~s~ 51 (293)
T PRK07315 7 EKFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKA--PVLIQTSM 51 (293)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC--CEEEEcCc
Confidence 45566777766 43 899999999999999988765 56777754
No 91
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.39 E-value=1.2e+02 Score=30.48 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=60.3
Q ss_pred EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHh-----HHHHHHHHHHcCCCCceEEE
Q 012098 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE-----KLQWFLDAVKAHPNELKLVG 260 (471)
Q Consensus 186 i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~-----el~~~l~~l~~~~~~l~l~G 260 (471)
+...++..+.++.+...+.|.+ +.|+..+.- |+.+ ...+|.... ++.++-+.++++ +++
T Consensus 46 l~~~Nl~~l~~~L~~n~~~~I~---f~RisS~l~----P~as----h~~~~~~~~~~~~~~l~~iG~~a~~~--~iR--- 109 (312)
T TIGR00629 46 LGKANLRDTMKTLHWNIGHGIP---FYRFSSSIF----PFAS----HPDVGYDLVTFAQKELREIGELAKTH--QHR--- 109 (312)
T ss_pred HHHHHHHHHHHHHHHHHHcCCc---EEecCcccc----CcCc----CchhhhhHHHHHHHHHHHHHHHHHHc--CeE---
Confidence 4456777888888877666543 478764321 1111 123344432 344444445555 565
Q ss_pred EEeecCCCC----CCHHHHHHHHHHHHHHHHHHHHcCCCC-------CEEEecCCCC
Q 012098 261 AHCHLGSTI----TKVDIFRDAAVLMVNYIDKIRAQGFEV-------DYLNIGGGLG 306 (471)
Q Consensus 261 lh~H~Gs~~----~~~~~~~~~~~~~~~~~~~l~~~g~~l-------~~ldiGGGl~ 306 (471)
|.+|.+-.+ .+.+.....++.+..-.+.+...|.+- =+|++||.+|
T Consensus 110 LS~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~g 166 (312)
T TIGR00629 110 LTFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFG 166 (312)
T ss_pred EEECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCC
Confidence 578987553 456677777777766666666666432 2467777653
No 92
>PRK01060 endonuclease IV; Provisional
Probab=64.26 E-value=44 Score=32.44 Aligned_cols=98 Identities=11% Similarity=0.171 Sum_probs=56.1
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST----ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~----~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
++.+++.++-+.++++ ++.+.++..|..-. ..+.+..+.+++.+.+.++..++.|.+ ++-+-.|.... ..
T Consensus 44 ~~~~~~~~lk~~~~~~--gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~--~vv~h~G~~~~--~~ 117 (281)
T PRK01060 44 LEELNIEAFKAACEKY--GISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAK--LLVFHPGSHLG--DI 117 (281)
T ss_pred CCHHHHHHHHHHHHHc--CCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEcCCcCCC--CC
Confidence 4666777777777776 68866666665321 234555566677777777766666765 44444443111 00
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCcEEEEcc
Q 012098 313 GAVLPKPRNLIDTVRELVL-SRNLNLIIEP 341 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~-~~~~~l~~Ep 341 (471)
.. -..++.+.+.+++++. .++++|.+|+
T Consensus 118 ~~-~~~~~~~~e~l~~l~~~~~gv~l~iEn 146 (281)
T PRK01060 118 DE-EDCLARIAESLNEALDKTQGVTIVLEN 146 (281)
T ss_pred cH-HHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 00 0123445566666543 3679999998
No 93
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=63.24 E-value=2.2e+02 Score=30.75 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=80.0
Q ss_pred EeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHH
Q 012098 97 YSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDL 176 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l 176 (471)
+++..++++++++...++.-..--+=++=-|++ +.+.++| .+-=+..+++.|.+-+-++.++...+.++.
T Consensus 70 ~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpy------lw~~qig----~krLv~kara~G~~I~gvvIsAGIP~le~A 139 (717)
T COG4981 70 VTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPY------LWKLQIG----GKRLVQKARASGAPIDGVVISAGIPSLEEA 139 (717)
T ss_pred cCHHHHHHHHHHHHhccCCCccceeeEEEechH------HhhhcCC----hHHHHHHHHhcCCCcceEEEecCCCcHHHH
Confidence 678889999999998886411111222223443 2233333 111145566677766656665544555554
Q ss_pred HHHH----hCCCE-EE--eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH-HHHHHHH
Q 012098 177 VLAA----QEGVF-VN--VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDA 248 (471)
Q Consensus 177 ~~a~----~~gv~-i~--vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e-l~~~l~~ 248 (471)
...+ ..|+. +. =.+.+++....++|++ ++..+|.+.+.-+..++.|.|.+ .++ +......
T Consensus 140 ~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka-~P~~pIilq~egGraGGHHSweD-----------ld~llL~tYs~ 207 (717)
T COG4981 140 VELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKA-NPTFPIILQWEGGRAGGHHSWED-----------LDDLLLATYSE 207 (717)
T ss_pred HHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhc-CCCCceEEEEecCccCCccchhh-----------cccHHHHHHHH
Confidence 4443 33764 32 3788888888888765 67788999998776555555422 222 3344556
Q ss_pred HHcCCCCce
Q 012098 249 VKAHPNELK 257 (471)
Q Consensus 249 l~~~~~~l~ 257 (471)
++.++ |+.
T Consensus 208 lR~~~-NIv 215 (717)
T COG4981 208 LRSRD-NIV 215 (717)
T ss_pred HhcCC-CEE
Confidence 66766 553
No 94
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=63.15 E-value=96 Score=30.42 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=20.3
Q ss_pred CCHhHHHHHHHHHHcC-CCCceEEEEEeecC
Q 012098 237 IRNEKLQWFLDAVKAH-PNELKLVGAHCHLG 266 (471)
Q Consensus 237 i~~~el~~~l~~l~~~-~~~l~l~Glh~H~G 266 (471)
.+|.++.+++..+++. + . ...|+|+|--
T Consensus 175 ~~P~~v~~lv~~l~~~~~-~-~~i~~H~Hnd 203 (274)
T cd07938 175 ATPAQVRRLLEAVLERFP-D-EKLALHFHDT 203 (274)
T ss_pred cCHHHHHHHHHHHHHHCC-C-CeEEEEECCC
Confidence 4688899998888764 2 2 4678899853
No 95
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=63.03 E-value=62 Score=34.26 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=66.2
Q ss_pred eHHHHHHHHHHHHHH----hc-CCCceEEEecccCC-----cHHHHHHHHH-cCC--ceEEcCHHHHHHHHHCCCCCCcE
Q 012098 98 SKPQITRNVEAYKQA----LE-GLNSIIGYAIKANN-----NYKILEHLRK-LGC--GAVLVSGNELRLALRAGFDPTKC 164 (471)
Q Consensus 98 d~~~l~~n~~~~~~a----~~-~~~~~i~yavKaN~-----~~~vl~~l~~-~G~--g~~vaS~~El~~a~~~G~~~~~I 164 (471)
+.+.+.++++.+.+. .. .++.. +-+++..+ ...+++.+.+ .+. .+|..+..+++.++++|.+...+
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD-~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~pl 181 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLD-MVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPL 181 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCC-EEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCce
Confidence 356777777777331 01 11111 22444432 2356677766 354 67888899999999999876667
Q ss_pred EEeCCCCc--HHHHHHHHhCCCEEEeCC--HHHHHHHHHHHHHcCC
Q 012098 165 IFNGNGKL--LEDLVLAAQEGVFVNVDS--EFDLENIVVASRIAGK 206 (471)
Q Consensus 165 i~~g~~k~--~~~l~~a~~~gv~i~vDs--~~el~~l~~~a~~~g~ 206 (471)
+++.. .+ ++.+..+.++|+.+++.+ ++.++.+.+.+.+.|.
T Consensus 182 I~Sat-~dN~~~m~~la~~yg~pvVv~~~dl~~L~~lv~~~~~~GI 226 (450)
T PRK04165 182 LYAAT-KENYEEMAELAKEYNCPLVVKAPNLEELKELVEKLQAAGI 226 (450)
T ss_pred EEecC-cchHHHHHHHHHHcCCcEEEEchhHHHHHHHHHHHHHcCC
Confidence 77654 23 334455667887655544 6777777777777776
No 96
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.86 E-value=43 Score=34.20 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=31.6
Q ss_pred CceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 206 KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 206 ~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
....|++|+++.. .-.-|++.+|..++++.+.+. ++.++ |.|.|+
T Consensus 214 ~~~~v~~R~s~~~-------------~~~~g~~~ee~~~i~~~L~~~--GvD~I--~Vs~g~ 258 (353)
T cd04735 214 KDFILGYRFSPEE-------------PEEPGIRMEDTLALVDKLADK--GLDYL--HISLWD 258 (353)
T ss_pred CCceEEEEECccc-------------ccCCCCCHHHHHHHHHHHHHc--CCCEE--EeccCc
Confidence 6789999998642 122378889998999998876 56664 444443
No 97
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=62.60 E-value=1.5e+02 Score=28.40 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=52.4
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCC-C
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH-T 312 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~-~ 312 (471)
+....+++.++.+.++.. ++.+.++..+.... ..+....++.++...+.++..++.|.+.-.+-.|+..+-+... .
T Consensus 40 ~~~~~~~~~~l~~~l~~~--gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~ 117 (274)
T COG1082 40 FPADYKELAELKELLADY--GLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSP 117 (274)
T ss_pred CCchhhhHHHHHHHHHHc--CcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCC
Confidence 333333355555666666 79998887776522 2333334555666666665556667543233333332221110 0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcEEEEcc
Q 012098 313 GAVLPKPRNLIDTVRELVLSRNLNLIIEP 341 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~~~~~l~~Ep 341 (471)
........+.++.+.+...++++.+.+|+
T Consensus 118 ~~~~~~~~~~l~~l~~~a~~~~i~l~~e~ 146 (274)
T COG1082 118 EEARERWAEALEELAEIAEELGIGLALEN 146 (274)
T ss_pred cccHHHHHHHHHHHHHHHHHhCCceEEee
Confidence 10000123334444444456788999998
No 98
>PRK08185 hypothetical protein; Provisional
Probab=61.30 E-value=1.6e+02 Score=29.11 Aligned_cols=123 Identities=19% Similarity=0.190 Sum_probs=69.4
Q ss_pred HHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 174 EDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 174 ~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
+.|..|.+.+ |. +++.|++.++.+.++|++.+. .|.|.+.++. ..-.| .++...+..+.
T Consensus 3 ~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~s--PvIl~~~~~~-------------~~~~~---~~~~~~~~~~a 64 (283)
T PRK08185 3 ELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNA--PAIIAIHPNE-------------LDFLG---DNFFAYVRERA 64 (283)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEeCcch-------------hhhcc---HHHHHHHHHHH
Confidence 4567777665 43 899999999999999998765 5677776431 11123 22444444333
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TVR 327 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i~ 327 (471)
+.. .+ .+.|| +-+ ..+.+..+.++ +.|++-=++| |. . + +.++.++ .+.
T Consensus 65 ~~~-~v-PV~lH--LDH-g~~~e~i~~ai-----------~~Gf~SVM~D-~S---------~--l-~~eeNi~~t~~vv 115 (283)
T PRK08185 65 KRS-PV-PFVIH--LDH-GATIEDVMRAI-----------RCGFTSVMID-GS---------L--L-PYEENVALTKEVV 115 (283)
T ss_pred HHC-CC-CEEEE--CCC-CCCHHHHHHHH-----------HcCCCEEEEe-CC---------C--C-CHHHHHHHHHHHH
Confidence 222 34 34454 533 23444333332 2355444444 21 1 2 2344443 445
Q ss_pred HHHhcCCcEEEEcccc
Q 012098 328 ELVLSRNLNLIIEPGR 343 (471)
Q Consensus 328 ~~~~~~~~~l~~EpGR 343 (471)
+.+..+|+.+..|.|+
T Consensus 116 ~~a~~~gv~vE~ElG~ 131 (283)
T PRK08185 116 ELAHKVGVSVEGELGT 131 (283)
T ss_pred HHHHHcCCeEEEEEee
Confidence 5557889999999998
No 99
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=61.11 E-value=1.2e+02 Score=28.29 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=67.9
Q ss_pred HHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCC---CEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCc
Q 012098 148 GNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEG---VFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHP 224 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~g---v~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~ 224 (471)
...++..++.---+-.+++.-. -+...++...+.| +.+.+++.+++.++.+..++.|. +++|=+||..
T Consensus 46 ~~~i~~i~~~~~~~~DvHLMv~-~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~--k~GialnP~T------ 116 (201)
T PF00834_consen 46 PDIIKAIRKITDLPLDVHLMVE-NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGI--KAGIALNPET------ 116 (201)
T ss_dssp HHHHHHHHTTSSSEEEEEEESS-SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTS--EEEEEE-TTS------
T ss_pred HHHHHHHhhcCCCcEEEEeeec-cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCC--CEEEEEECCC------
Confidence 4555555544111223454443 2345677777766 35788988888888888888775 6677778752
Q ss_pred ccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee-cCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH-LGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 225 ~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H-~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
+.+.+..++. .+..+.+++- .|.. ......+.+++..++.+.+.+.|... .|-+=|
T Consensus 117 -------------~~~~~~~~l~-------~vD~VlvMsV~PG~~--Gq~f~~~~~~KI~~l~~~~~~~~~~~-~I~vDG 173 (201)
T PF00834_consen 117 -------------PVEELEPYLD-------QVDMVLVMSVEPGFG--GQKFIPEVLEKIRELRKLIPENGLDF-EIEVDG 173 (201)
T ss_dssp --------------GGGGTTTGC-------CSSEEEEESS-TTTS--SB--HGGHHHHHHHHHHHHHHHTCGS-EEEEES
T ss_pred -------------CchHHHHHhh-------hcCEEEEEEecCCCC--cccccHHHHHHHHHHHHHHHhcCCce-EEEEEC
Confidence 2334433222 4667777764 3321 11222345555556555555556544 344456
Q ss_pred CC
Q 012098 304 GL 305 (471)
Q Consensus 304 Gl 305 (471)
|.
T Consensus 174 GI 175 (201)
T PF00834_consen 174 GI 175 (201)
T ss_dssp SE
T ss_pred CC
Confidence 65
No 100
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=60.72 E-value=1.7e+02 Score=28.47 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHhcCCCceEEEeccc-CCc----------HHHHHHHHHcCC-ceEE--------cCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 110 KQALEGLNSIIGYAIKA-NNN----------YKILEHLRKLGC-GAVL--------VSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 110 ~~a~~~~~~~i~yavKa-N~~----------~~vl~~l~~~G~-g~~v--------aS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
++++...+..+..-+|. .|. ..+++...+.|+ ++-| .|...+..+++. ++. .|+.---
T Consensus 42 ~~~l~~~~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~-v~i-Pvl~kdf 119 (260)
T PRK00278 42 AAALRAGKPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAA-VSL-PVLRKDF 119 (260)
T ss_pred HHHHhcCCCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHh-cCC-CEEeeee
Confidence 33443333567788877 333 466777777776 7777 888888888875 222 2443233
Q ss_pred CCcHHHHHHHHhCCC---EEEe--CCHHHHHHHHHHHHHcCCceEEEEEEe
Q 012098 170 GKLLEDLVLAAQEGV---FVNV--DSEFDLENIVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv---~i~v--Ds~~el~~l~~~a~~~g~~~~V~lRin 215 (471)
..++.++..+.+.|. .+.. -+.++++.+.+.++..| ..+++.+.
T Consensus 120 i~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh 168 (260)
T PRK00278 120 IIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVH 168 (260)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeC
Confidence 345667888888874 2222 24568888888888776 45666663
No 101
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.98 E-value=48 Score=31.69 Aligned_cols=92 Identities=18% Similarity=0.056 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCCCceEEEEEeecCCCC-------CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC
Q 012098 243 QWFLDAVKAHPNELKLVGAHCHLGSTI-------TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV 315 (471)
Q Consensus 243 ~~~l~~l~~~~~~l~l~Glh~H~Gs~~-------~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~ 315 (471)
.++.+.++++ ++.+.++++..+.-. ..++...+..+.+.+.++..++.|. ++|.+..|.. +.....
T Consensus 42 ~~l~~~l~~~--gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~--~~i~~~~g~~-~~~~~~-- 114 (254)
T TIGR03234 42 EALKARLAAA--GLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARALGC--PQVNCLAGKR-PAGVSP-- 114 (254)
T ss_pred HHHHHHHHHc--CCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHHhCC--CEEEECcCCC-CCCCCH--
Confidence 3344455555 799999876553210 0111111222233334444444454 5677765532 111000
Q ss_pred CCCHHHHHHHHHHH---HhcCCcEEEEcc
Q 012098 316 LPKPRNLIDTVREL---VLSRNLNLIIEP 341 (471)
Q Consensus 316 ~~~~~~~~~~i~~~---~~~~~~~l~~Ep 341 (471)
....+.+++.++++ ..+.|+.+.+||
T Consensus 115 ~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 115 EEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 00123344444444 456899999998
No 102
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=58.59 E-value=77 Score=29.47 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=48.4
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------------------HHHHHHHHhCCCE
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------------------LEDLVLAAQEGVF 185 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------------------~~~l~~a~~~gv~ 185 (471)
|.|----+..|+..+.+.+.+..-|++++.+.. .+....|...|+.
T Consensus 74 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~ 153 (205)
T cd02003 74 GDGSYLMLHSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGAR 153 (205)
T ss_pred ccchhhccHHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCE
Confidence 444333467788888887777655666654321 1222234446775
Q ss_pred -EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 186 -VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 186 -i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
..|++.+|++...+.+.+.+.+.-|-+++++.
T Consensus 154 ~~~v~~~~el~~al~~a~~~~gp~lIeV~v~~~ 186 (205)
T cd02003 154 VEKVKTIEELKAALAKAKASDRTTVIVIKTDPK 186 (205)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEeecc
Confidence 78899999998877776655555556666654
No 103
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=58.37 E-value=51 Score=30.56 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=46.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-------------------------------HHHHHHHHhCCCE-EE
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-------------------------------LEDLVLAAQEGVF-VN 187 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-------------------------------~~~l~~a~~~gv~-i~ 187 (471)
|.|----+..||..+.+.+++.--|++++.+.. .+..+.|...|+. ..
T Consensus 83 GDG~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 162 (202)
T cd02006 83 GDYDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCKAIR 162 (202)
T ss_pred eChHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCEEEE
Confidence 455555677888888888877655566554221 1222334445775 78
Q ss_pred eCCHHHHHHHHHHHHH----cCCceEEEEEEec
Q 012098 188 VDSEFDLENIVVASRI----AGKKVNVLLRINP 216 (471)
Q Consensus 188 vDs~~el~~l~~~a~~----~g~~~~V~lRin~ 216 (471)
|++.+||+...+.+.. .+.+.-|-|++++
T Consensus 163 v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 163 VTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 9999999877776653 3443334444443
No 104
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=58.33 E-value=2e+02 Score=28.52 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=71.9
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ +. +++.+++.++.+.++|++.+. .|.|.+.++ .-++ ...+.+..++..+
T Consensus 7 k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~s--PvIiq~~~~--------------~~~~-~g~~~~~~~~~~~ 69 (284)
T PRK09195 7 KQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHS--PVIIAGTPG--------------TFSY-AGTEYLLAIVSAA 69 (284)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcChh--------------HHhh-CCHHHHHHHHHHH
Confidence 45667777766 43 899999999999999998764 567777543 1122 2234455555543
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i 326 (471)
.+.. .+ .+.||.--| .+.+..++++ +.|++-=++| |..+ | +++=++ .+
T Consensus 70 A~~~-~V-PV~lHLDHg---~~~e~i~~Ai-----------~~GftSVM~D-gS~l-----------~-~eeNi~~T~~v 120 (284)
T PRK09195 70 AKQY-HH-PLALHLDHH---EKFDDIAQKV-----------RSGVRSVMID-GSHL-----------P-FAQNISLVKEV 120 (284)
T ss_pred HHHC-CC-CEEEECCCC---CCHHHHHHHH-----------HcCCCEEEeC-CCCC-----------C-HHHHHHHHHHH
Confidence 3322 33 344554322 2444333322 2366544555 3322 2 232222 33
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+....+|+.+-.|.|+--
T Consensus 121 v~~Ah~~gv~VEaElG~vg 139 (284)
T PRK09195 121 VDFCHRFDVSVEAELGRLG 139 (284)
T ss_pred HHHHHHcCCEEEEEEeccc
Confidence 4445578999999999864
No 105
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=58.24 E-value=52 Score=33.47 Aligned_cols=60 Identities=25% Similarity=0.360 Sum_probs=34.4
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEecCCC-CcCCCCC
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA-QGFEVDYLNIGGGL-GIDYYHT 312 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~-~g~~l~~ldiGGGl-~i~y~~~ 312 (471)
+++.+++.+ ++-.+-+..++=+ +.+.....+ +++-++.+++ .| .+.|-+|||+ |+++...
T Consensus 290 VL~llk~Ng-GvVMVnfy~~~is-c~~~A~v~~----v~~Hi~hIr~VaG--~~hIGlGg~yDGi~~~Pk 351 (419)
T KOG4127|consen 290 VLQLLKENG-GVVMVNFYPGFIS-CSDRATVSD----VADHINHIRAVAG--IDHIGLGGDYDGIPRVPK 351 (419)
T ss_pred HHHHHhhcC-CEEEEEeeccccc-CCCcccHHH----HHHHHHHHHHhhc--cceeeccCCcCCcCCCCc
Confidence 456667766 6555444443322 333333333 3444555555 36 6899999999 7877544
No 106
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=57.47 E-value=2.3e+02 Score=28.95 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=32.1
Q ss_pred HHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 174 EDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 174 ~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+.|..|.+.+ |. +++.+.+.++.+.++|++.+. .|.|.+.++
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIiq~s~~ 50 (345)
T cd00946 6 KLFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKS--PIIIQFSNG 50 (345)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECCcc
Confidence 4566677766 43 899999999999999998765 567777543
No 107
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=56.89 E-value=1.9e+02 Score=28.49 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=33.1
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
..+.|..|.+.| |- +++.+++.++.+.++|++.+. .|.|.+.+
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~--Pvii~~~~ 51 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNS--PIILQIAE 51 (281)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcCc
Confidence 345677777766 43 899999999999999998764 56777764
No 108
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=56.47 E-value=2.1e+02 Score=28.33 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=56.8
Q ss_pred CCCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHH--HHHHHHHHHH-cC-CceEEEEEEecCCCC-CCCcccccCCC
Q 012098 159 FDPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFD--LENIVVASRI-AG-KKVNVLLRINPDVDP-QVHPYVATGNK 231 (471)
Q Consensus 159 ~~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~~a~~-~g-~~~~V~lRin~~~~~-~~~~~~~tg~~ 231 (471)
++++++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+.+.+ .. ..-.|.|=++.+.-. ..-+- || .
T Consensus 163 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~~i~~~g~~~v~~~~~~~l~~~~~~vyvS~DiDvlDps~aPg--v~-t 239 (300)
T TIGR01229 163 ISPKNLVYIGLRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAEDGPIHLSLDVDGLDPSLAPA--TG-T 239 (300)
T ss_pred cCcccEEEEecCCCChHHHHHHHHcCCeEEEHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEEeccccCcccCCC--CC-C
Confidence 356788888863 266777788888885 55544433 2222222211 11 111466666644321 11111 22 3
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
....|++..|+..+++.+...+ +++|+-+-
T Consensus 240 p~pgGl~~~e~~~~l~~i~~~~---~v~g~Div 269 (300)
T TIGR01229 240 PVVGGLTFREGLLIMEMLYETG---LLTALDVV 269 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC---CEEEEEEE
Confidence 6788999999999999886543 46665553
No 109
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=55.92 E-value=2.7e+02 Score=29.38 Aligned_cols=52 Identities=12% Similarity=-0.029 Sum_probs=30.4
Q ss_pred cCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcC
Q 012098 146 VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG 205 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g 205 (471)
.+.+.++.++++|+ .+|.+.-...+.+.++ .+..+ .+.+++....+.+++.|
T Consensus 161 ~t~e~l~~l~~aGv--nRiSiGVQSf~d~vLk-~lgR~-----~~~~~~~~~i~~l~~~g 212 (449)
T PRK09058 161 FDDEKADAALDAGA--NRFSIGVQSFNTQVRR-RAGRK-----DDREEVLARLEELVARD 212 (449)
T ss_pred CCHHHHHHHHHcCC--CEEEecCCcCCHHHHH-HhCCC-----CCHHHHHHHHHHHHhCC
Confidence 36777888888898 4777633333444443 33332 45666666666666655
No 110
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=54.19 E-value=2.6e+02 Score=28.62 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCc---eEEEecccCCcHHHHHHHHHcCCceEEcC-----HHHHHHHHHCCCCCCcEEEeCCCCcH-
Q 012098 103 TRNVEAYKQALEGLNS---IIGYAIKANNNYKILEHLRKLGCGAVLVS-----GNELRLALRAGFDPTKCIFNGNGKLL- 173 (471)
Q Consensus 103 ~~n~~~~~~a~~~~~~---~i~yavKaN~~~~vl~~l~~~G~g~~vaS-----~~El~~a~~~G~~~~~Ii~~g~~k~~- 173 (471)
.+...++-+.+...++ ++.|+.-+....+.++.+.+.+-+..+.+ ...++.+.++|+ +.|.+..+ .++
T Consensus 22 ~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~--~~i~i~~~-~Sd~ 98 (365)
T TIGR02660 22 AAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGV--DAVHISIP-VSDL 98 (365)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCc--CEEEEEEc-cCHH
Q ss_pred ------------------HHHHHHHhCCCEEEe-------CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccccc
Q 012098 174 ------------------EDLVLAAQEGVFVNV-------DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVAT 228 (471)
Q Consensus 174 ------------------~~l~~a~~~gv~i~v-------Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~t 228 (471)
+.++.|.+.|..+.+ -+.+.+..+.+.+.+.|... |++.
T Consensus 99 ~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~---i~l~------------- 162 (365)
T TIGR02660 99 QIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADR---FRFA------------- 162 (365)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCE---EEEc-------------
Q ss_pred CCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 229 GNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 229 g~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.+=-..+++++.++++.+++.- . ...++|+|
T Consensus 163 ---DT~G~~~P~~v~~lv~~l~~~~-~-v~l~~H~H 193 (365)
T TIGR02660 163 ---DTVGILDPFSTYELVRALRQAV-D-LPLEMHAH 193 (365)
T ss_pred ---ccCCCCCHHHHHHHHHHHHHhc-C-CeEEEEec
No 111
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=54.16 E-value=2.4e+02 Score=28.26 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=72.5
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ |. +++.+++.++.+.++|++.+. .|.|.+.++ ..+| ...+.+..++..+
T Consensus 6 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~s--PvIlq~s~~--------------~~~~-~g~~~~~~~~~~~ 68 (307)
T PRK05835 6 NEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENS--PLFIQASEG--------------AIKY-MGIDMAVGMVKIM 68 (307)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC--CEEEEcCcc--------------HHhh-CChHHHHHHHHHH
Confidence 45677777766 43 899999999999999998765 466776543 1222 1234455555444
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i 326 (471)
.+.. .--.+.||. -+ ..+.+..++++ +.|++-=++| |.-+ | +++=++ .+
T Consensus 69 a~~~-~~VPValHL--DH-g~~~e~i~~ai-----------~~GftSVM~D-gS~l-----------~-~eeNi~~T~~v 120 (307)
T PRK05835 69 CERY-PHIPVALHL--DH-GTTFESCEKAV-----------KAGFTSVMID-ASHH-----------A-FEENLELTSKV 120 (307)
T ss_pred HHhc-CCCeEEEEC--CC-CCCHHHHHHHH-----------HcCCCEEEEe-CCCC-----------C-HHHHHHHHHHH
Confidence 3321 212445554 32 23444333322 2366555666 3322 2 233233 33
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+....+|+.+-.|.|+--
T Consensus 121 ve~Ah~~gv~VEaElG~vg 139 (307)
T PRK05835 121 VKMAHNAGVSVEAELGRLM 139 (307)
T ss_pred HHHHHHcCCEEEEEecccC
Confidence 4445678999999999864
No 112
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=54.08 E-value=2.2e+02 Score=28.24 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=75.7
Q ss_pred HHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH-
Q 012098 173 LEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA- 248 (471)
Q Consensus 173 ~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~- 248 (471)
.+.|..|.+.|. -+|+.+++.++.+.++|++.+ .+|.|.+.++ .-+|.=-.+.+...+..
T Consensus 7 ~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~--sPvIiq~S~g--------------~~~y~gg~~~~~~~v~~~ 70 (286)
T COG0191 7 KELLDKAKENGYAVPAFNINNLETLQAILEAAEEEK--SPVIIQFSEG--------------AAKYAGGADSLAHMVKAL 70 (286)
T ss_pred HHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhC--CCEEEEeccc--------------HHHHhchHHHHHHHHHHH
Confidence 566778887764 389999999999999998765 4678887654 11211112344444443
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH---HHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN---LIDT 325 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~---~~~~ 325 (471)
++.+ ++ .+-||.--|. +.+...+++ +.|+.=-++| |.=++ +++ +.+.
T Consensus 71 a~~~--~v-PV~lHlDHg~---~~~~~~~ai-----------~~GFsSvMiD-gS~~~------------~eENi~~tke 120 (286)
T COG0191 71 AEKY--GV-PVALHLDHGA---SFEDCKQAI-----------RAGFSSVMID-GSHLP------------FEENIAITKE 120 (286)
T ss_pred HHHC--CC-CEEEECCCCC---CHHHHHHHH-----------hcCCceEEec-CCcCC------------HHHHHHHHHH
Confidence 3444 43 3335553332 333333322 2466555666 33222 222 2233
Q ss_pred HHHHHhcCCcEEEEcccceeecccc
Q 012098 326 VRELVLSRNLNLIIEPGRSLIANTC 350 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~lva~ag 350 (471)
+-+.+...|+.+-.|-|+-.=..-|
T Consensus 121 vv~~ah~~gvsVEaElG~~GG~Edg 145 (286)
T COG0191 121 VVEFAHAYGVSVEAELGTLGGEEDG 145 (286)
T ss_pred HHHHHHHcCCcEEEEeccccCccCC
Confidence 4445667899999999987655555
No 113
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=53.31 E-value=1.2e+02 Score=31.40 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCCceEEEEEee----c----CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCH----L----GS-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYH 311 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H----~----Gs-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y~~ 311 (471)
+.++-+.++++ ++.+.++.+- . |+ ...+.+..+.+++.+.+.++..++.|.+ .+.+=+|. +.+|..
T Consensus 70 ~~~lk~~L~~~--GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~--~v~v~~G~~g~~~~~ 145 (382)
T TIGR02631 70 VRRFKKALDET--GLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAE--TYVVWGGREGAEYDG 145 (382)
T ss_pred HHHHHHHHHHh--CCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEccCCCCCcCcc
Confidence 34555666666 6887776542 1 11 1234555566777777777766666664 45554443 444432
Q ss_pred CCCCCCCHHHHHHHHHHHH---hc--CCcEEEEcc
Q 012098 312 TGAVLPKPRNLIDTVRELV---LS--RNLNLIIEP 341 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~---~~--~~~~l~~Ep 341 (471)
.......++.+.+.++.++ .+ +|+++.+||
T Consensus 146 ~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp 180 (382)
T TIGR02631 146 AKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP 180 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 1110011344555555554 33 369999998
No 114
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=53.14 E-value=2.3e+02 Score=27.63 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=73.1
Q ss_pred cHHHHHHHHHcCC-ceEEc----CHHHHHHHH---HCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEe-----------
Q 012098 129 NYKILEHLRKLGC-GAVLV----SGNELRLAL---RAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV----------- 188 (471)
Q Consensus 129 ~~~vl~~l~~~G~-g~~va----S~~El~~a~---~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~v----------- 188 (471)
-..+++.|.+.|+ -+||. +..+..... +.+.. ..+.-... -..++++.|.+.|+. +.+
T Consensus 24 k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~-~~v~~~~r-~~~~di~~a~~~g~~~i~i~~~~S~~~~~~ 101 (262)
T cd07948 24 KIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLGLK-AKILTHIR-CHMDDARIAVETGVDGVDLVFGTSPFLREA 101 (262)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCC-CcEEEEec-CCHHHHHHHHHcCcCEEEEEEecCHHHHHH
Confidence 3578899999998 67874 444443333 23443 33422222 346789999998863 322
Q ss_pred -------CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEE
Q 012098 189 -------DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGA 261 (471)
Q Consensus 189 -------Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Gl 261 (471)
++++.+..+.+.++..|.. +++++ ..-|+.+++.+.++++.+.+. +..-+.+
T Consensus 102 ~~~~~~~e~~~~~~~~i~~a~~~G~~----v~~~~---------------eda~r~~~~~l~~~~~~~~~~--g~~~i~l 160 (262)
T cd07948 102 SHGKSITEIIESAVEVIEFVKSKGIE----VRFSS---------------EDSFRSDLVDLLRVYRAVDKL--GVNRVGI 160 (262)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEE---------------EeeCCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 3344455555666666533 33432 223567788899999988887 3555555
Q ss_pred EeecCCCCCCHHHHHHHH
Q 012098 262 HCHLGSTITKVDIFRDAA 279 (471)
Q Consensus 262 h~H~Gs~~~~~~~~~~~~ 279 (471)
-=..|. ..++...+.+
T Consensus 161 ~Dt~G~--~~P~~v~~~~ 176 (262)
T cd07948 161 ADTVGI--ATPRQVYELV 176 (262)
T ss_pred CCcCCC--CCHHHHHHHH
Confidence 545653 3455444333
No 115
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=52.97 E-value=42 Score=34.54 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCcEEEE-------eHHHHHHHHHHHHHHhcCCCceEEEecccC-CcHHHHHHHHHcCCceEEcCHHHHHHHH-------
Q 012098 91 KRPFYLY-------SKPQITRNVEAYKQALEGLNSIIGYAIKAN-NNYKILEHLRKLGCGAVLVSGNELRLAL------- 155 (471)
Q Consensus 91 ~tP~~v~-------d~~~l~~n~~~~~~a~~~~~~~i~yavKaN-~~~~vl~~l~~~G~g~~vaS~~El~~a~------- 155 (471)
+-|+.+. |.+.|+.-.+. +.+.+ -+.|+.-.. .+..++++..+.|+.+-+.|..|+.++.
T Consensus 188 ~vPLIL~gsg~~~kD~eVLeaaLe~----~~G~k-pLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL~ 262 (389)
T TIGR00381 188 DVPIVIGGSGNPEKDPLVLEKAAEV----AEGER-CLLASANLDLDYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLL 262 (389)
T ss_pred CCCEEEeCCCCCcCCHHHHHHHHHH----hCCCC-cEEEecCchhhHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHHH
Confidence 6799888 66666554433 33323 256666555 6788999999999988888866665554
Q ss_pred HCCCCCCcEEEeCC
Q 012098 156 RAGFDPTKCIFNGN 169 (471)
Q Consensus 156 ~~G~~~~~Ii~~g~ 169 (471)
++|+++++|++...
T Consensus 263 ~~Gv~~eDIVlDP~ 276 (389)
T TIGR00381 263 KRGLMPRDIVMDPT 276 (389)
T ss_pred HcCCCHHHEEEcCC
Confidence 47999999998654
No 116
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.50 E-value=2e+02 Score=29.34 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeC--------CCCcHHH--------HHHHHhCCCEEE--e
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNG--------NGKLLED--------LVLAAQEGVFVN--V 188 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g--------~~k~~~~--------l~~a~~~gv~i~--v 188 (471)
.++++.+.+. +. ..-+....+++.|+++|++.-.+.+.. -.++.++ ++.|.+.|..+. +
T Consensus 103 ~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~i 182 (347)
T PLN02746 103 KDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYV 182 (347)
T ss_pred HHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3566666542 32 223457889999999988642233211 1133332 222334565331 2
Q ss_pred --------C---CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCC-CCHhHHHHHHHHHHcCCCCc
Q 012098 189 --------D---SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG-IRNEKLQWFLDAVKAHPNEL 256 (471)
Q Consensus 189 --------D---s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfG-i~~~el~~~l~~l~~~~~~l 256 (471)
+ +.+.+..+.+.+.+.|.. .|++. +| .| ..+.++.++++.+++.- ..
T Consensus 183 s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad---~I~l~-----------DT------~G~a~P~~v~~lv~~l~~~~-~~ 241 (347)
T PLN02746 183 SCVVGCPIEGPVPPSKVAYVAKELYDMGCY---EISLG-----------DT------IGVGTPGTVVPMLEAVMAVV-PV 241 (347)
T ss_pred EeeecCCccCCCCHHHHHHHHHHHHHcCCC---EEEec-----------CC------cCCcCHHHHHHHHHHHHHhC-CC
Confidence 1 344455555555555532 13332 12 23 35788999998887542 23
Q ss_pred eEEEEEeec
Q 012098 257 KLVGAHCHL 265 (471)
Q Consensus 257 ~l~Glh~H~ 265 (471)
..+++|+|-
T Consensus 242 ~~i~~H~Hn 250 (347)
T PLN02746 242 DKLAVHFHD 250 (347)
T ss_pred CeEEEEECC
Confidence 347889985
No 117
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=51.73 E-value=75 Score=28.43 Aligned_cols=66 Identities=24% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC----------------------cHHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK----------------------LLEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k----------------------~~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|----+.+|+..+...+.+.--|+++..+. ..+....|...|+. ..|++.+|++.
T Consensus 74 GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~ 153 (172)
T cd02004 74 GDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTPEELKP 153 (172)
T ss_pred cchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 44433346788888888887655556654321 11223345557885 78999999988
Q ss_pred HHHHHHHcC
Q 012098 197 IVVASRIAG 205 (471)
Q Consensus 197 l~~~a~~~g 205 (471)
..+.+...+
T Consensus 154 al~~a~~~~ 162 (172)
T cd02004 154 ALKRALASG 162 (172)
T ss_pred HHHHHHHcC
Confidence 777766543
No 118
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.51 E-value=66 Score=32.66 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=32.1
Q ss_pred ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 207 KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 207 ~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
...|++|+++.. ...-|++.+|..++++.+.+. ++.+ ||+|.|+.
T Consensus 207 ~~~v~vRis~~d-------------~~~~G~~~~e~~~i~~~l~~~--gvD~--i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISASD-------------YHPGGLTVQDYVQYAKWMKEQ--GVDL--IDVSSGAV 251 (337)
T ss_pred CCCeEEEecccc-------------cCCCCCCHHHHHHHHHHHHHc--CCCE--EEeCCCCC
Confidence 357999998642 122388899999999988775 5554 67777764
No 119
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=51.01 E-value=2.9e+02 Score=28.26 Aligned_cols=127 Identities=13% Similarity=0.069 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCC-ceEE----cCHHHHHHHH---HCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEe-CC---------
Q 012098 130 YKILEHLRKLGC-GAVL----VSGNELRLAL---RAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV-DS--------- 190 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~v----aS~~El~~a~---~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~v-Ds--------- 190 (471)
..+++.|.+.|+ .+|+ .+..|.+.++ +.+.+ ..|.-... -..++++.|.+.|+. +.+ .+
T Consensus 25 ~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~-~~v~~~~r-~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~ 102 (363)
T TIGR02090 25 VEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGLN-AEICSLAR-ALKKDIDKAIDCGVDSIHTFIATSPIHLKYK 102 (363)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCC-cEEEEEcc-cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH
Confidence 578888989997 4565 5567764443 34543 34432233 246789999998862 322 22
Q ss_pred --------HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEE
Q 012098 191 --------EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAH 262 (471)
Q Consensus 191 --------~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh 262 (471)
++.+....+.+++.|.. +++.... .+ -.+++.+.++++.+.+. +..-+.+.
T Consensus 103 ~~~~~~~~~~~~~~~i~~ak~~G~~----v~~~~ed-------------a~--r~~~~~l~~~~~~~~~~--g~~~i~l~ 161 (363)
T TIGR02090 103 LKKSRDEVLEKAVEAVEYAKEHGLI----VEFSAED-------------AT--RTDIDFLIKVFKRAEEA--GADRINIA 161 (363)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCE----EEEEEee-------------cC--CCCHHHHHHHHHHHHhC--CCCEEEEe
Confidence 23344455566666643 3343221 12 24678888888888776 45555555
Q ss_pred eecCCCCCCHHHHHHHHHH
Q 012098 263 CHLGSTITKVDIFRDAAVL 281 (471)
Q Consensus 263 ~H~Gs~~~~~~~~~~~~~~ 281 (471)
=..|. ..++.+.+.++.
T Consensus 162 DT~G~--~~P~~v~~li~~ 178 (363)
T TIGR02090 162 DTVGV--LTPQKMEELIKK 178 (363)
T ss_pred CCCCc--cCHHHHHHHHHH
Confidence 44553 345544444433
No 120
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=49.89 E-value=3.1e+02 Score=29.03 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=14.7
Q ss_pred EEEeCCCCcHHHHHHHHhCCCE-EEeCC
Q 012098 164 CIFNGNGKLLEDLVLAAQEGVF-VNVDS 190 (471)
Q Consensus 164 Ii~~g~~k~~~~l~~a~~~gv~-i~vDs 190 (471)
|+-.|-.++..++..|+..|.. +.+.+
T Consensus 330 viadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 330 VIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 4555555555666666666543 45554
No 121
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.62 E-value=45 Score=33.72 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=37.7
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
|.++-+..|..+.|++|+++.. ..+-|++.++..++++.+++. ++.+ +|+|.|+.
T Consensus 206 I~aIR~avG~d~~v~vris~~~-------------~~~~g~~~eea~~ia~~Le~~--Gvd~--iev~~g~~ 260 (338)
T cd04733 206 YDAIRAAVGPGFPVGIKLNSAD-------------FQRGGFTEEDALEVVEALEEA--GVDL--VELSGGTY 260 (338)
T ss_pred HHHHHHHcCCCCeEEEEEcHHH-------------cCCCCCCHHHHHHHHHHHHHc--CCCE--EEecCCCC
Confidence 3333334577789999998531 234578888988999988876 4555 67777754
No 122
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=48.97 E-value=3e+02 Score=27.85 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=57.2
Q ss_pred CHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCE--EEe-----CCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 147 SGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVF--VNV-----DSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 147 S~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~--i~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+..+++.|.++|++.-||.+...- ...+.++.+.+.|.. +++ -+.+++..+.+.+.+.|.. .|.+.
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~---~i~i~-- 163 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGAD---CVYIV-- 163 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCC---EEEEc--
Confidence 678899999999875555543221 122345555667753 222 3345555555555555543 23442
Q ss_pred CCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 218 VDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 218 ~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
+|.| .+.++++.+++..+++.-..-.-+|+|+|--
T Consensus 164 ---------DT~G-----~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hnn 198 (333)
T TIGR03217 164 ---------DSAG-----AMLPDDVRDRVRALKAVLKPETQVGFHAHHN 198 (333)
T ss_pred ---------cCCC-----CCCHHHHHHHHHHHHHhCCCCceEEEEeCCC
Confidence 1211 2578899999988876410113579999953
No 123
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.94 E-value=2.6e+02 Score=27.03 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=65.7
Q ss_pred EEEeCCCCcHHHHHHHHhC--CCEE-EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHh
Q 012098 164 CIFNGNGKLLEDLVLAAQE--GVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240 (471)
Q Consensus 164 Ii~~g~~k~~~~l~~a~~~--gv~i-~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~ 240 (471)
|+..+-+.+....+..... .|++ .+-....+....+.|+..|.. |+|.+-... -.++.+..| .-+-+.+.+
T Consensus 33 IVIddlG~~~~~~~~i~~Lp~eVTlA~~P~~~~~~~~~~~A~~~G~e--vlih~PmeP--~~~~~~e~g--tL~~~~s~~ 106 (250)
T COG2861 33 IVIDDLGLSQTGTQAILALPPEVTLAFAPFAPHAREWAQKARNAGHE--VLIHMPMEP--FSYPKIEPG--TLRPGMSAE 106 (250)
T ss_pred EEECCccccHHHHHHHHhCCccceEEecCCCchhHHHHHHHHhcCCE--EEEeccCCc--ccCCCCCCC--CcccCCCHH
Confidence 5665555554444433333 4654 444555567777777777774 555554331 122222223 333455566
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEE
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ld 300 (471)
|...-++.+... --..+|+.=|.||...+.+ ++ +..+++.|++.| +-+||
T Consensus 107 e~~~rl~~a~~~--v~~~~GlnNhmGs~~tsn~---~a---M~~~m~~Lk~r~--l~flD 156 (250)
T COG2861 107 EILRRLRKAMNK--VPDAVGLNNHMGSRFTSNE---DA---MEKLMEALKERG--LYFLD 156 (250)
T ss_pred HHHHHHHHHHhh--CccceeehhhhhhhhcCcH---HH---HHHHHHHHHHCC--eEEEc
Confidence 666656554432 2368999999999765432 22 344556666654 33454
No 124
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.82 E-value=1.2e+02 Score=30.25 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
+.++.+..|....|++|+++.. ....|.+.++..++++.+.+. ++. .||+|.+..
T Consensus 198 i~avr~~~g~d~~i~vris~~~-------------~~~~g~~~~e~~~la~~l~~~--G~d--~i~vs~g~~ 252 (327)
T cd02803 198 VAAVREAVGPDFPVGVRLSADD-------------FVPGGLTLEEAIEIAKALEEA--GVD--ALHVSGGSY 252 (327)
T ss_pred HHHHHHHcCCCceEEEEechhc-------------cCCCCCCHHHHHHHHHHHHHc--CCC--EEEeCCCCC
Confidence 3333334567789999998752 223468889998999988876 454 466666654
No 125
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=48.71 E-value=65 Score=31.93 Aligned_cols=127 Identities=24% Similarity=0.238 Sum_probs=69.0
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|+.|.+.| |. +++.+++.++.+.++|++.+. +|.|.+.++. .++. ..+.+...+..+
T Consensus 6 ~~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~s--PvIlq~~~~~--------------~~~~-~~~~~~~~~~~~ 68 (287)
T PF01116_consen 6 KELLKKAKEGGYAVPAFNVYNLETARAVIEAAEELNS--PVILQISPSE--------------VKYM-GLEYLAAMVKAA 68 (287)
T ss_dssp HHHHHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS---EEEEEEHHH--------------HHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcchhh--------------hhhh-hHHHHHHHHHHH
Confidence 45567777665 44 899999999999999998754 5788887531 1111 234444444444
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i 326 (471)
.+.- .+ .+.+|.--| .+.+..+++++ .|++-=++| |. .+| +++-++ .+
T Consensus 69 a~~~-~v-PValHLDH~---~~~e~i~~ai~-----------~GftSVM~D-gS-----------~l~-~eeNi~~T~~v 119 (287)
T PF01116_consen 69 AEEA-SV-PVALHLDHG---KDFEDIKRAID-----------AGFTSVMID-GS-----------ALP-FEENIAITREV 119 (287)
T ss_dssp HHHS-TS-EEEEEEEEE----SHHHHHHHHH-----------HTSSEEEEE--T-----------TS--HHHHHHHHHHH
T ss_pred HHHc-CC-CEEeecccC---CCHHHHHHHHH-----------hCccccccc-CC-----------cCC-HHHHHHHHHHH
Confidence 3332 33 455666433 23443333322 155433444 22 122 333333 33
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
-+.+..+|+.+-.|.|+--
T Consensus 120 v~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 120 VEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp HHHHHHTT-EEEEEESBSS
T ss_pred HHhhhhhCCEEEEEeeeee
Confidence 4455678999999999864
No 126
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=48.61 E-value=1.2e+02 Score=31.77 Aligned_cols=78 Identities=19% Similarity=0.070 Sum_probs=53.7
Q ss_pred eEEEecccCCc--HHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhC--CCEEEeCCHHHH
Q 012098 119 IIGYAIKANNN--YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE--GVFVNVDSEFDL 194 (471)
Q Consensus 119 ~i~yavKaN~~--~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~--gv~i~vDs~~el 194 (471)
+-.--.|++-. ..+-+.|.+.|+-+-=..++|+..-++ +-+|.-|+.-.-.|+++++..+++. |.... |+.+|+
T Consensus 104 k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLGE~IlQl~-~~~PsHIV~PAlH~~reqIa~if~ekl~~~~~-~~~eel 181 (459)
T COG1139 104 KKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLGELILQLA-GEPPSHIVAPALHKNREQIAEIFKEKLGYEGE-DTPEEL 181 (459)
T ss_pred cEEEEecchhHHHhhhHHHHHHcCCeEEEccHHHHHHHhc-CCCCcceeccccccCHHHHHHHHHHhcCCCCC-CCHHHH
Confidence 44455566654 345566667777666668999998877 6677888876777999999998864 43333 777666
Q ss_pred HHHH
Q 012098 195 ENIV 198 (471)
Q Consensus 195 ~~l~ 198 (471)
-...
T Consensus 182 ~~~a 185 (459)
T COG1139 182 TAAA 185 (459)
T ss_pred HHHH
Confidence 5544
No 127
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=48.33 E-value=64 Score=32.51 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCcEEEE-------eHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHH-------
Q 012098 90 EKRPFYLY-------SKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLAL------- 155 (471)
Q Consensus 90 ~~tP~~v~-------d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~------- 155 (471)
-+.|+.|. |.+.|++-++.. ++.+. +.+++-...+..++.+..+.|+.+-+.+..++..+.
T Consensus 123 vd~PL~Id~s~n~~kD~evleaale~~----~g~~p-LInSat~en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~ 197 (319)
T PRK04452 123 VDVPLIIGGSGNPEKDAEVLEKVAEAA----EGERC-LLGSAEEDNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLT 197 (319)
T ss_pred CCCCEEEecCCCCCCCHHHHHHHHHHh----CCCCC-EEEECCHHHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHH
Confidence 36799776 566665544433 32222 667766555788999999999988888878877766
Q ss_pred HCCCCCCcEEEeCC
Q 012098 156 RAGFDPTKCIFNGN 169 (471)
Q Consensus 156 ~~G~~~~~Ii~~g~ 169 (471)
++|+++++|++...
T Consensus 198 ~~Gi~~edIviDP~ 211 (319)
T PRK04452 198 ELGVPRERIVMDPT 211 (319)
T ss_pred HcCCCHHHEEEeCC
Confidence 37999999998654
No 128
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=48.22 E-value=1.6e+02 Score=29.83 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=34.4
Q ss_pred HcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 203 IAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 203 ~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
..|..+.|.+|+++.. ..+-|++.+|..++++.+.+.+ .+.+ ||.|.|+.
T Consensus 204 ~vg~~~~v~iRl~~~~-------------~~~~G~~~~e~~~~~~~l~~~G-~vd~--i~vs~g~~ 253 (343)
T cd04734 204 AVGPDFIVGIRISGDE-------------DTEGGLSPDEALEIAARLAAEG-LIDY--VNVSAGSY 253 (343)
T ss_pred HcCCCCeEEEEeehhh-------------ccCCCCCHHHHHHHHHHHHhcC-CCCE--EEeCCCCC
Confidence 3577788999998642 2234788899888888888763 2555 56665543
No 129
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=48.03 E-value=65 Score=32.26 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCcEEEeCC--CCcHHHHHHHHhCCCEEEeCCH-------------------HHHHHHHHHHHHcCC
Q 012098 148 GNELRLALRAGFDPTKCIFNGN--GKLLEDLVLAAQEGVFVNVDSE-------------------FDLENIVVASRIAGK 206 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~--~k~~~~l~~a~~~gv~i~vDs~-------------------~el~~l~~~a~~~g~ 206 (471)
.+.++...+.|++++++++... ..+.++++.+++.|+.+.+|.+ +.++.|.++.+ .|-
T Consensus 170 ~e~~~il~e~Gv~~~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~~~g~~~~~~~~~~~d~~ri~~l~~L~~-~Gy 248 (308)
T PF02126_consen 170 LEQLDILEEEGVDPSRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGREFSGKDKNPRVGYPPDEERIELLKELIE-EGY 248 (308)
T ss_dssp HHHHHHHHHTT--GGGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B-TTTTTCHSCTTS-HHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHcCCChhHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCcccccCcccCccCCCCCHHHHHHHHHHHHH-cCC
Confidence 5667777789999999998543 2456778888899999999888 33555655543 355
Q ss_pred ceEEEEEEe
Q 012098 207 KVNVLLRIN 215 (471)
Q Consensus 207 ~~~V~lRin 215 (471)
.=+|+|=-+
T Consensus 249 ~~qIlLS~D 257 (308)
T PF02126_consen 249 ADQILLSHD 257 (308)
T ss_dssp GGGEEE-HH
T ss_pred cCcEEEecc
Confidence 446666444
No 130
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=48.02 E-value=2.8e+02 Score=27.17 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHH
Q 012098 194 LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVD 273 (471)
Q Consensus 194 l~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~ 273 (471)
+....+.+++.|..+.+.+-...+. ...++ .+++.+.++++.+.+. +...+.+.=..|. ..+.
T Consensus 116 ~~~~v~~ak~~G~~v~~~i~~~f~~-----------~~~~~--~~~~~~~~~~~~~~~~--Ga~~i~l~DT~G~--~~P~ 178 (274)
T cd07938 116 FEPVAELAKAAGLRVRGYVSTAFGC-----------PYEGE--VPPERVAEVAERLLDL--GCDEISLGDTIGV--ATPA 178 (274)
T ss_pred HHHHHHHHHHCCCeEEEEEEeEecC-----------CCCCC--CCHHHHHHHHHHHHHc--CCCEEEECCCCCc--cCHH
Confidence 3444556777776554444433211 01223 3678888888888776 5666666555553 3455
Q ss_pred HHHHHHH
Q 012098 274 IFRDAAV 280 (471)
Q Consensus 274 ~~~~~~~ 280 (471)
.+.+.+.
T Consensus 179 ~v~~lv~ 185 (274)
T cd07938 179 QVRRLLE 185 (274)
T ss_pred HHHHHHH
Confidence 4444433
No 131
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=47.53 E-value=2.9e+02 Score=27.23 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=72.0
Q ss_pred HHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 174 EDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 174 ~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
+.|..|.+.+ |. +++.+++.++.+.++|++.+. .|.|.+.++. ..-.| .+.+..++..+.
T Consensus 3 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~s--PvIi~~~~~~-------------~~~~~--~~~~~~~~~~~a 65 (276)
T cd00947 3 ELLKKAREGGYAVGAFNINNLETLKAILEAAEETRS--PVILQISEGA-------------IKYAG--LELLVAMVKAAA 65 (276)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcCcch-------------hhhCC--HHHHHHHHHHHH
Confidence 4567777766 43 899999999999999988764 5777776431 11123 445555555443
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH---HHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI---DTVR 327 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~---~~i~ 327 (471)
+.. .+ .+.||.--| .+.+...+++ +.|++-=++| |..+ | +++=+ ..+.
T Consensus 66 ~~~-~V-PV~lHLDH~---~~~~~i~~ai-----------~~GftSVMiD-~S~l-----------~-~eeNi~~t~~vv 116 (276)
T cd00947 66 ERA-SV-PVALHLDHG---SSFELIKRAI-----------RAGFSSVMID-GSHL-----------P-FEENVAKTKEVV 116 (276)
T ss_pred HHC-CC-CEEEECCCC---CCHHHHHHHH-----------HhCCCEEEeC-CCCC-----------C-HHHHHHHHHHHH
Confidence 321 23 444554322 3444433332 2365544555 3332 2 23222 2344
Q ss_pred HHHhcCCcEEEEccccee
Q 012098 328 ELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 328 ~~~~~~~~~l~~EpGR~l 345 (471)
+.+...|+.+-.|.|+--
T Consensus 117 ~~ah~~gv~VEaElG~i~ 134 (276)
T cd00947 117 ELAHAYGVSVEAELGRIG 134 (276)
T ss_pred HHHHHcCCeEEEEEeeec
Confidence 455678999999999864
No 132
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.98 E-value=2.8e+02 Score=26.96 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=19.7
Q ss_pred CCHhHHHHHHHHHHcCCCC-ceEEEEEeec
Q 012098 237 IRNEKLQWFLDAVKAHPNE-LKLVGAHCHL 265 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~-l~l~Glh~H~ 265 (471)
++|+++.+++..+++.- . -...|+|+|-
T Consensus 164 ~~P~~v~~lv~~l~~~~-~~~~~i~~H~Hn 192 (266)
T cd07944 164 MYPEDIKRIISLLRSNL-DKDIKLGFHAHN 192 (266)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEeCC
Confidence 47889999988887642 2 1356889885
No 133
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=46.91 E-value=3.4e+02 Score=27.84 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 174 EDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 174 ~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+.|..|.+.+ |. +++.+++.+..+.++|++.+. .|.|.+.++
T Consensus 17 ~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~s--PvIlq~s~~ 61 (357)
T TIGR01520 17 KLFQYAKENNFAIPAINCTSSSTINAALEAAADVKS--PIIIQFSNG 61 (357)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcCcc
Confidence 4455666665 43 899999999999999988765 567777643
No 134
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=46.72 E-value=92 Score=28.31 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=45.9
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|----+.+|+..+.+.+.+.--|++++.+.. .+....|...|+. ..|++.+|++.
T Consensus 76 GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~ 155 (186)
T cd02015 76 GDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVEKPEELEA 155 (186)
T ss_pred cccHHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEeCCHHHHHH
Confidence 444333567888888888876544555544211 1122344456775 78999999998
Q ss_pred HHHHHHHcCCceEEEEEEe
Q 012098 197 IVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin 215 (471)
..+.+...+.+.-|-++++
T Consensus 156 al~~a~~~~~p~liev~~~ 174 (186)
T cd02015 156 ALKEALASDGPVLLDVLVD 174 (186)
T ss_pred HHHHHHhCCCCEEEEEEeC
Confidence 8777765444443444544
No 135
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.71 E-value=2.4e+02 Score=27.51 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=61.6
Q ss_pred HHHHHHHHHCCCCCCcE-EEeCCC-CcHHHHHHHHhCCCE---E--EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCC
Q 012098 148 GNELRLALRAGFDPTKC-IFNGNG-KLLEDLVLAAQEGVF---V--NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDP 220 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~I-i~~g~~-k~~~~l~~a~~~gv~---i--~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~ 220 (471)
...++.+.+...+..++ .+.-+. ...++++.+.+.|+. + -..+++++....+.+++.|.. +++++.
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~----v~~~~~--- 130 (266)
T cd07944 58 DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYE----VFFNLM--- 130 (266)
T ss_pred HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCe----EEEEEE---
Confidence 34445554443222344 333333 246778888877752 2 346666666677777766643 334432
Q ss_pred CCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHH
Q 012098 221 QVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLM 282 (471)
Q Consensus 221 ~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~ 282 (471)
.=|+.+++.+.++++.+.+. +..-+.+.=..| ...++...+.+..+
T Consensus 131 ------------~a~~~~~~~~~~~~~~~~~~--g~~~i~l~DT~G--~~~P~~v~~lv~~l 176 (266)
T cd07944 131 ------------AISGYSDEELLELLELVNEI--KPDVFYIVDSFG--SMYPEDIKRIISLL 176 (266)
T ss_pred ------------eecCCCHHHHHHHHHHHHhC--CCCEEEEecCCC--CCCHHHHHHHHHHH
Confidence 12346788888888888776 344444443344 34565555444443
No 136
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.58 E-value=2.1e+02 Score=28.06 Aligned_cols=98 Identities=15% Similarity=0.043 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHCCCCCCcEEEeCC--CCcHHHHHHHHhCCCEEE---------eCCHHHHHHHHHHHHHcCCceEEEEEE
Q 012098 146 VSGNELRLALRAGFDPTKCIFNGN--GKLLEDLVLAAQEGVFVN---------VDSEFDLENIVVASRIAGKKVNVLLRI 214 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii~~g~--~k~~~~l~~a~~~gv~i~---------vDs~~el~~l~~~a~~~g~~~~V~lRi 214 (471)
....+++.+.++|++.-+|.+.-. ..-.+.++.|.+.|..+. .-+.+.+..+.+.+.+.|... |++
T Consensus 92 ~~~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~---i~l 168 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADS---ICI 168 (275)
T ss_pred HHHHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCE---EEE
Q ss_pred ecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 215 NPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 215 n~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
. .+=-.++++++.++++.+++.- + ...|+|+|
T Consensus 169 ~----------------DT~G~~~P~~v~~lv~~l~~~~-~-~~l~~H~H 200 (275)
T cd07937 169 K----------------DMAGLLTPYAAYELVKALKKEV-G-LPIHLHTH 200 (275)
T ss_pred c----------------CCCCCCCHHHHHHHHHHHHHhC-C-CeEEEEec
No 137
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=46.22 E-value=3.4e+02 Score=27.70 Aligned_cols=135 Identities=21% Similarity=0.173 Sum_probs=73.9
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
..+.|..|.+.+ |- +++.+++.++.+.++|++.+. .|.|.+.++ ..+| ...+.+..++..
T Consensus 6 ~k~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~s--PvIiq~s~~--------------~~~~-~g~~~~~~~~~~ 68 (347)
T PRK09196 6 LRQLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDS--PVILQASAG--------------ARKY-AGEPFLRHLILA 68 (347)
T ss_pred HHHHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCC--CEEEECCcc--------------Hhhh-CCHHHHHHHHHH
Confidence 345677777766 43 899999999999999998765 567777543 1121 123445555554
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH---
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT--- 325 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~--- 325 (471)
+.+.. .--.+.||.--| .+.+..+++ + +.|++-=++| |.-+. + +.... ++++=++.
T Consensus 69 ~a~~~-~~VPValHLDHg---~~~e~i~~a----------i-~~GftSVMiD-gS~l~-~---~~~~~-p~eENI~~Tke 127 (347)
T PRK09196 69 AVEEY-PHIPVVMHQDHG---NSPATCQRA----------I-QLGFTSVMMD-GSLKA-D---GKTPA-SYEYNVDVTRK 127 (347)
T ss_pred HHHhC-CCCcEEEECCCC---CCHHHHHHH----------H-HcCCCEEEec-CCCCc-c---cCCCC-CHHHHHHHHHH
Confidence 44321 112455655333 344432222 1 2477655667 43331 0 11111 23333333
Q ss_pred HHHHHhcCCcEEEEcccce
Q 012098 326 VRELVLSRNLNLIIEPGRS 344 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~ 344 (471)
+.+.+...|+.+-.|.|+.
T Consensus 128 vve~Ah~~Gv~VEaELG~v 146 (347)
T PRK09196 128 VVEMAHACGVSVEGELGCL 146 (347)
T ss_pred HHHHHHHcCCeEEEEEeec
Confidence 3344556899999999985
No 138
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=45.83 E-value=3.1e+02 Score=27.12 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=69.7
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.| |. +++.+++.++.+.++|++.+. .|.|.+.++ .-++ ...+.+...+..+
T Consensus 7 k~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~s--PvIl~~~~~--------------~~~~-~g~~~~~~~~~~~ 69 (283)
T PRK07998 7 RILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGL--PNFIQIAPT--------------NAQL-SGYDYIYEIVKRH 69 (283)
T ss_pred HHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECcHh--------------HHhh-CCHHHHHHHHHHH
Confidence 45566777766 43 899999999999999998765 466666433 1111 1233444444433
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHH---HHHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNL---IDTV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~---~~~i 326 (471)
.+.. .+ .+.||. -+ ..+.+..++++ +.|++-=++| |.- .| +++- ...+
T Consensus 70 A~~~-~v-PV~lHL--DH-~~~~e~i~~Ai-----------~~GftSVM~D-gS~-----------l~-~eeNi~~T~~v 120 (283)
T PRK07998 70 ADKM-DV-PVSLHL--DH-GKTFEDVKQAV-----------RAGFTSVMID-GAA-----------LP-FEENIAFTKEA 120 (283)
T ss_pred HHHC-CC-CEEEEC--cC-CCCHHHHHHHH-----------HcCCCEEEEe-CCC-----------CC-HHHHHHHHHHH
Confidence 3322 34 344554 32 23444333331 2366544455 222 22 2222 2334
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+.+..+|+.+-.|.|+--
T Consensus 121 ve~Ah~~gv~VEaElG~vg 139 (283)
T PRK07998 121 VDFAKSYGVPVEAELGAIL 139 (283)
T ss_pred HHHHHHcCCEEEEEeccCC
Confidence 4455678999999999864
No 139
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=45.66 E-value=3.5e+02 Score=27.64 Aligned_cols=135 Identities=17% Similarity=0.078 Sum_probs=74.7
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|+.|.+.+ |- +++.+++.++.+.++|++.+. .|.|.+.++ ..++ +..+.+..++..+
T Consensus 5 k~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~s--PvIlq~s~~--------------~~~~-~g~~~~~~~~~~~ 67 (347)
T TIGR01521 5 RQLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDS--PVILQASRG--------------ARSY-AGAPFLRHLILAA 67 (347)
T ss_pred HHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECCcc--------------hhhh-CCHHHHHHHHHHH
Confidence 45677777765 43 899999999999999998765 567777543 1121 2234555555544
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH---H
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT---V 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~---i 326 (471)
.+.. .--.+.||.--| .+.+..++++ +.|++-=++| |.-+. +....+ ++++=++. +
T Consensus 68 ae~~-~~VPValHLDHg---~~~e~i~~Ai-----------~~GFtSVMiD-gS~l~----~~~~~~-p~eENI~~Tkev 126 (347)
T TIGR01521 68 IEEY-PHIPVVMHQDHG---NSPATCQRAI-----------QLGFTSVMMD-GSLRE----DAKTPA-DYDYNVRVTAEV 126 (347)
T ss_pred HHhC-CCCcEEEECCCC---CCHHHHHHHH-----------HcCCCEEeec-CcCCc----ccCCCC-CHHHHHHHHHHH
Confidence 4321 112455554332 3444322221 2466555666 43331 001111 23333333 3
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
-+.....|+.+-.|.|+.-
T Consensus 127 ve~Ah~~GvsVEaELG~ig 145 (347)
T TIGR01521 127 VAFAHAVGASVEGELGCLG 145 (347)
T ss_pred HHHHHHcCCeEEEEeeecc
Confidence 3445578999999999864
No 140
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.46 E-value=4.6e+02 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=22.3
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
++.+.++.+++..+++.- + ..+|+|+|--+.
T Consensus 180 ~l~P~~~~~lv~~lk~~~-~-~pi~~H~Hnt~G 210 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRV-D-VPLHLHCHATTG 210 (593)
T ss_pred CcCHHHHHHHHHHHHHhc-C-CeEEEEECCCCc
Confidence 357899999999988642 3 356899996443
No 141
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=45.24 E-value=2.8e+02 Score=27.98 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.9
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
..+.|..|.+.+ |- +++.+++.++.+.++|++.+. .|.|.+.++
T Consensus 12 ~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~s~~ 58 (321)
T PRK07084 12 TREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKS--PVILQVSKG 58 (321)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEechh
Confidence 346677787776 43 899999999999999998764 577777643
No 142
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=45.15 E-value=2.9e+02 Score=26.83 Aligned_cols=52 Identities=27% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCCC-cHHHHHHHHhCCCE
Q 012098 131 KILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNGK-LLEDLVLAAQEGVF 185 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k-~~~~l~~a~~~gv~ 185 (471)
++++.+.+. +. .+|..+...++.|+++|. .|+.+..+. .++.++.+.++|+.
T Consensus 65 ~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~---~iINsis~~~~~~~~~l~~~~~~~ 120 (257)
T TIGR01496 65 PVIKALRDQPDVPISVDTYRAEVARAALEAGA---DIINDVSGGQDPAMLEVAAEYGVP 120 (257)
T ss_pred HHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCchhHHHHHHcCCc
Confidence 455666554 54 788888999999999986 366555543 55667777788764
No 143
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=44.77 E-value=2.9e+02 Score=26.48 Aligned_cols=94 Identities=13% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCC----CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGS----TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs----~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
++.+++.++.+.++++ ++.+. +|..- ...+.+..+++++.+.+.++..++.|.+ +|.+=.|.. ..
T Consensus 42 ~~~~~~~~l~~~~~~~--gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~--~vv~h~g~~--~~-- 110 (273)
T smart00518 42 LSEETAEKFKEALKEN--NIDVS---VHAPYLINLASPDKEKVEKSIERLIDEIKRCEELGIK--ALVFHPGSY--LK-- 110 (273)
T ss_pred CCHHHHHHHHHHHHHc--CCCEE---EECCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEccccc--cC--
Confidence 5566777777777776 57643 33221 1234556667777777777777777765 344433321 10
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCcEEEEcc
Q 012098 313 GAVLPKPRNLIDTVRELVL-SRNLNLIIEP 341 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~-~~~~~l~~Ep 341 (471)
......++.+.+.+++++. ..++++.+|+
T Consensus 111 ~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn 140 (273)
T smart00518 111 QSKEEALNRIIESLNEVIDETKGVVILLET 140 (273)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCcEEEEec
Confidence 0000123445566666654 4678899995
No 144
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=44.36 E-value=89 Score=28.81 Aligned_cols=76 Identities=21% Similarity=0.143 Sum_probs=45.4
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc---------------------HHHHHHHHhCCCE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL---------------------LEDLVLAAQEGVF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~---------------------~~~l~~a~~~gv~-i~vDs~~el~~l 197 (471)
|.|----+..|+..+.+.+.+.--|++++.+.. .+..+.|...|+. ..|++.+||+..
T Consensus 79 GDG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 158 (196)
T cd02013 79 GDGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGITVDKPEDVGPA 158 (196)
T ss_pred cchHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEEECCHHHHHHH
Confidence 444333468888888888877655666654321 1112234456775 799999999877
Q ss_pred HHHHHH---cCCceEEEEEEe
Q 012098 198 VVASRI---AGKKVNVLLRIN 215 (471)
Q Consensus 198 ~~~a~~---~g~~~~V~lRin 215 (471)
.+.+.+ .+.+.-|-++++
T Consensus 159 l~~a~~~~~~~~p~liev~v~ 179 (196)
T cd02013 159 LQKAIAMMAEGKTTVIEIVCD 179 (196)
T ss_pred HHHHHhcCCCCCeEEEEEEeC
Confidence 776654 343333444443
No 145
>PRK09875 putative hydrolase; Provisional
Probab=44.32 E-value=2.2e+02 Score=28.31 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=43.4
Q ss_pred CHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCEEEeCC---------HHHHHHHHHHHHHcCCceEEEE
Q 012098 147 SGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVFVNVDS---------EFDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 147 S~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~i~vDs---------~~el~~l~~~a~~~g~~~~V~l 212 (471)
....++.+.+.|++++++++.... .+.++++.+++.|+.+-.|. .+-++.|..+ .+.|-.=+|+|
T Consensus 165 g~e~l~il~e~Gvd~~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~~~~~pd~~r~~~i~~L-~~~Gy~drilL 240 (292)
T PRK09875 165 GLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYPDEKRIAMLHAL-RDRGLLNRVML 240 (292)
T ss_pred hHHHHHHHHHcCcCcceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCCcccCCHHHHHHHHHHH-HhcCCCCeEEE
Confidence 345577788899999999886652 46788899999999877664 2223333333 33454446776
No 146
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.11 E-value=3.3e+02 Score=26.89 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=98.3
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCC-ceE--------EEecccCCcHHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCC
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLN-SII--------GYAIKANNNYKILEHLRKL-GC--GAVLVSGNELRLALRAGF 159 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~-~~i--------~yavKaN~~~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~ 159 (471)
+|-..++.++..+-++.+.++ +.. .++ ++++. .. .++++.+.+. +. ..-+....+++.|+++|+
T Consensus 18 ~~~~~~s~e~k~~ia~~L~~~--Gv~~IEvgsf~~p~~~p~~~-d~-~e~~~~l~~~~~~~~~~l~~~~~~ie~A~~~g~ 93 (287)
T PRK05692 18 NEKRFIPTADKIALIDRLSAA--GLSYIEVASFVSPKWVPQMA-DA-AEVMAGIQRRPGVTYAALTPNLKGLEAALAAGA 93 (287)
T ss_pred CcCCCcCHHHHHHHHHHHHHc--CCCEEEeCCCcCcccccccc-cH-HHHHHhhhccCCCeEEEEecCHHHHHHHHHcCC
Confidence 333446666666666655543 221 122 22222 22 4566666542 22 233468899999999998
Q ss_pred CCCcEEEeCC--------CCcHH--------HHHHHHhCCCEEE------e----C---CHHHHHHHHHHHHHcCCceEE
Q 012098 160 DPTKCIFNGN--------GKLLE--------DLVLAAQEGVFVN------V----D---SEFDLENIVVASRIAGKKVNV 210 (471)
Q Consensus 160 ~~~~Ii~~g~--------~k~~~--------~l~~a~~~gv~i~------v----D---s~~el~~l~~~a~~~g~~~~V 210 (471)
+.-+|.+... .++.+ .++.|.+.|..+. + + +.+.+..+.+.+.+.|..
T Consensus 94 ~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d--- 170 (287)
T PRK05692 94 DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY--- 170 (287)
T ss_pred CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc---
Confidence 6433333221 12222 2334445675431 2 1 455666666666666643
Q ss_pred EEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC-CCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHH
Q 012098 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH-PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 289 (471)
Q Consensus 211 ~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~-~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l 289 (471)
.|++. +|.| -..+.++.++++.+++. + .+ -.++|+|--.... ... + +..+
T Consensus 171 ~i~l~-----------DT~G-----~~~P~~v~~lv~~l~~~~~-~~-~i~~H~Hn~~Gla-~AN---~-------laA~ 221 (287)
T PRK05692 171 EISLG-----------DTIG-----VGTPGQVRAVLEAVLAEFP-AE-RLAGHFHDTYGQA-LAN---I-------YASL 221 (287)
T ss_pred EEEec-----------cccC-----ccCHHHHHHHHHHHHHhCC-CC-eEEEEecCCCCcH-HHH---H-------HHHH
Confidence 23332 1221 23678899999888753 3 34 4588998533221 111 1 1111
Q ss_pred HHcCCCCCEEEec-CCCCc-CCCCCCCCCCCHHHHHHHHH
Q 012098 290 RAQGFEVDYLNIG-GGLGI-DYYHTGAVLPKPRNLIDTVR 327 (471)
Q Consensus 290 ~~~g~~l~~ldiG-GGl~i-~y~~~~~~~~~~~~~~~~i~ 327 (471)
+.| .+++|.- +|+|- ||.......+..++++..++
T Consensus 222 -~aG--~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~ 258 (287)
T PRK05692 222 -EEG--ITVFDASVGGLGGCPYAPGASGNVATEDVLYMLH 258 (287)
T ss_pred -HhC--CCEEEEEccccCCCCCCCCccccccHHHHHHHHH
Confidence 224 4567655 56653 45433233345666666554
No 147
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=43.48 E-value=3.9e+02 Score=27.64 Aligned_cols=134 Identities=16% Similarity=0.028 Sum_probs=66.3
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
|||.+ ++.+.+++-++.+++.++-.. ..-..+=+||.. .+...++..+++|+ .+|.+.-..
T Consensus 75 GTps~-l~~~~l~~ll~~i~~~~~~~~-~~eit~E~~P~~---------------lt~e~l~~l~~~Gv--nrislGvQS 135 (400)
T PRK07379 75 GTPSL-LSVEQLERILTTLDQRFGIAP-DAEISLEIDPGT---------------FDLEQLQGYRSLGV--NRVSLGVQA 135 (400)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCCc---------------CCHHHHHHHHHCCC--CEEEEEccc
Confidence 57774 577888888888777653211 012233345431 24555666666777 366663333
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCc-eEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKK-VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~-~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+++.+ ..+..+ .+.+++....+.+++.|-. +.+-+ =. | =-|-+.+++.+-++.+
T Consensus 136 ~~d~~L-~~l~R~-----~~~~~~~~ai~~l~~~G~~~v~~dl--I~------------G----lPgqt~e~~~~tl~~~ 191 (400)
T PRK07379 136 FQDELL-ALCGRS-----HRVKDIFAAVDLIHQAGIENFSLDL--IS------------G----LPHQTLEDWQASLEAA 191 (400)
T ss_pred CCHHHH-HHhCCC-----CCHHHHHHHHHHHHHcCCCeEEEEe--ec------------C----CCCCCHHHHHHHHHHH
Confidence 333333 333332 3455555555555555532 22211 00 0 0122455666666655
Q ss_pred HcCC-CCceEEEEEeecCC
Q 012098 250 KAHP-NELKLVGAHCHLGS 267 (471)
Q Consensus 250 ~~~~-~~l~l~Glh~H~Gs 267 (471)
.+.+ .++.+..+....|+
T Consensus 192 ~~l~p~~is~y~L~~~pgT 210 (400)
T PRK07379 192 IALNPTHLSCYDLVLEPGT 210 (400)
T ss_pred HcCCCCEEEEecceecCCc
Confidence 5443 25566666655554
No 148
>PRK13774 formimidoylglutamase; Provisional
Probab=43.41 E-value=3.5e+02 Score=27.00 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=56.0
Q ss_pred HHHHHHCCCCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHHH--HHHHHHHHHc-CCceEEEEEEecCCC-CCC
Q 012098 151 LRLALRAGFDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFDL--ENIVVASRIA-GKKVNVLLRINPDVD-PQV 222 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~el--~~l~~~a~~~-g~~~~V~lRin~~~~-~~~ 222 (471)
+..+++.+. +.+++..|-- .+.++.+.+.+.|+. +..+.+.+. ..+.++.+.. +..-.|.|=++.+.- +..
T Consensus 172 ~~~i~e~~~-~~~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~vyvS~DiD~lDps~ 250 (311)
T PRK13774 172 FRQILEEDE-NTDYLVLGIAQGGNTQSLFDYAKEKKIDYVFADELLSHVSPTIKDMIERFIHEHDVIMFTICMDVIDSAF 250 (311)
T ss_pred HHHHHhcCC-CCCEEEEeeCCCCCCHHHHHHHHHcCCEEEEHHHhhhhhHHHHHHHHHHHHhcCCeEEEEEeeCCcChhh
Confidence 344444332 2355555532 245777888888875 454444331 0122222221 111246666654421 111
Q ss_pred CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
-+ .| +.....|++..|+.++++.+... -+++|+.+-
T Consensus 251 aP--Gt-gtP~pgGLt~~e~l~il~~l~~~---~~v~g~Div 286 (311)
T PRK13774 251 AP--GV-SAPAVLGLYPHTVLELAKRIIPS---DKVSSVSIA 286 (311)
T ss_pred CC--CC-CCCCCCCCCHHHHHHHHHHHHhc---CCEEEEEEE
Confidence 11 12 24788999999999999887543 357777664
No 149
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=43.41 E-value=3.5e+02 Score=27.33 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCEE---------EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH
Q 012098 174 EDLVLAAQEGVFV---------NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244 (471)
Q Consensus 174 ~~l~~a~~~gv~i---------~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~ 244 (471)
+.++.+.+.|+.+ +-|+.+.+..+.+...+.|...-.+.+..+. ++ .+.|-++.++..+
T Consensus 241 ~ai~~L~~aGi~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~-----------~g-~~~f~~~~~~~~~ 308 (331)
T TIGR00238 241 EAMKKLRTVNVTLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKV-----------QG-AKHFLVPDAEAAQ 308 (331)
T ss_pred HHHHHHHHcCCEEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCC-----------CC-cccccCCHHHHHH
Confidence 3445555667532 3578888888887776666544334444432 22 4678899999988
Q ss_pred HHHHHHc
Q 012098 245 FLDAVKA 251 (471)
Q Consensus 245 ~l~~l~~ 251 (471)
+++.+.+
T Consensus 309 i~~~l~~ 315 (331)
T TIGR00238 309 IVKELAR 315 (331)
T ss_pred HHHHHHh
Confidence 8887765
No 150
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.20 E-value=2.2e+02 Score=24.69 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
..++++.+.+. +..++|+++..++. ...+.++.++|++.+..=-.+=+||...++-..
T Consensus 43 ~e~i~~~a~~~--~~d~V~lS~~~~~~----------~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~---------- 100 (137)
T PRK02261 43 QEEFIDAAIET--DADAILVSSLYGHG----------EIDCRGLREKCIEAGLGDILLYVGGNLVVGKHD---------- 100 (137)
T ss_pred HHHHHHHHHHc--CCCEEEEcCccccC----------HHHHHHHHHHHHhcCCCCCeEEEECCCCCCccC----------
Q ss_pred HHHHHHHHHhcCCcEEEEccc
Q 012098 322 LIDTVRELVLSRNLNLIIEPG 342 (471)
Q Consensus 322 ~~~~i~~~~~~~~~~l~~EpG 342 (471)
.+...+.+.+.|+.-++.||
T Consensus 101 -~~~~~~~l~~~G~~~vf~~~ 120 (137)
T PRK02261 101 -FEEVEKKFKEMGFDRVFPPG 120 (137)
T ss_pred -hHHHHHHHHHcCCCEEECcC
No 151
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=43.16 E-value=1.5e+02 Score=27.66 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHcCC-ceEEcCHHHHHHHHHC-CCCC----------CcEEEeCCCCcHHHHHHHHhCCCE-EEeCCH------
Q 012098 131 KILEHLRKLGC-GAVLVSGNELRLALRA-GFDP----------TKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE------ 191 (471)
Q Consensus 131 ~vl~~l~~~G~-g~~vaS~~El~~a~~~-G~~~----------~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~------ 191 (471)
.+++...+.|+ ++.+.+..+++.+++. ..|- ..+ +.++ ..++++.+.+.|+. +++|..
T Consensus 27 ~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~-~~~~--~~~~v~~a~~aGad~I~~d~~~~~~p~ 103 (221)
T PRK01130 27 AMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIKRDYPDSEV-YITP--TLKEVDALAAAGADIIALDATLRPRPD 103 (221)
T ss_pred HHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCc-eECC--CHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 45555555665 6777777777766653 1110 001 2222 34567777777763 443321
Q ss_pred -HHHHHHHHHHHH
Q 012098 192 -FDLENIVVASRI 203 (471)
Q Consensus 192 -~el~~l~~~a~~ 203 (471)
+++..+.+.+++
T Consensus 104 ~~~~~~~i~~~~~ 116 (221)
T PRK01130 104 GETLAELVKRIKE 116 (221)
T ss_pred CCCHHHHHHHHHh
Confidence 455555555555
No 152
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.62 E-value=1.1e+02 Score=25.52 Aligned_cols=81 Identities=28% Similarity=0.364 Sum_probs=40.6
Q ss_pred cEEEeCCCCcHHHHHHHHhCCCEE--Ee--CCHH----HHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC
Q 012098 163 KCIFNGNGKLLEDLVLAAQEGVFV--NV--DSEF----DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234 (471)
Q Consensus 163 ~Ii~~g~~k~~~~l~~a~~~gv~i--~v--Ds~~----el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK 234 (471)
++..+|. .++++++.+.+.|+.. +. |+++ ..+.+.+.+++.|-.. +.+=|..
T Consensus 8 ~~~vs~Q-~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~~------------------ 67 (110)
T PF04273_consen 8 DLSVSGQ-PSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVDG------------------ 67 (110)
T ss_dssp TEEEECS---HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----T------------------
T ss_pred CeEECCC-CCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecCC------------------
Confidence 4555554 6788999999999853 33 2221 2334556677777532 3333321
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
-+++.+++..+.+.+.+.+ + -+-+||..|
T Consensus 68 ~~~~~~~v~~f~~~l~~~~-~--Pvl~hC~sG 96 (110)
T PF04273_consen 68 GAITEEDVEAFADALESLP-K--PVLAHCRSG 96 (110)
T ss_dssp TT--HHHHHHHHHHHHTTT-T--SEEEE-SCS
T ss_pred CCCCHHHHHHHHHHHHhCC-C--CEEEECCCC
Confidence 1467788888888888766 3 333555444
No 153
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=41.93 E-value=3.4e+02 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=19.8
Q ss_pred CCHhHHHHHHHHHHcC-CCCceEEEEEeec
Q 012098 237 IRNEKLQWFLDAVKAH-PNELKLVGAHCHL 265 (471)
Q Consensus 237 i~~~el~~~l~~l~~~-~~~l~l~Glh~H~ 265 (471)
.+|+++.++++.+++. + .+ ..|+|+|-
T Consensus 177 ~~P~~v~~lv~~l~~~~~-~~-~l~~H~Hn 204 (273)
T cd07941 177 TLPHEIAEIVKEVRERLP-GV-PLGIHAHN 204 (273)
T ss_pred CCHHHHHHHHHHHHHhCC-CC-eeEEEecC
Confidence 4678899988888764 3 34 45889985
No 154
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=41.83 E-value=3.1e+02 Score=29.72 Aligned_cols=170 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCcE--EEeC---CCCcHHHHHHHHhCCCEEEeC---------CHHHHHHHHHHHHHcCCceEEEE--
Q 012098 149 NELRLALRAGFDPTKC--IFNG---NGKLLEDLVLAAQEGVFVNVD---------SEFDLENIVVASRIAGKKVNVLL-- 212 (471)
Q Consensus 149 ~El~~a~~~G~~~~~I--i~~g---~~k~~~~l~~a~~~gv~i~vD---------s~~el~~l~~~a~~~g~~~~V~l-- 212 (471)
.+++.+.+.|-+.++| +|.| ...+.++.+..++.=....-+ ++++++.+.+.+......+.|-.
T Consensus 122 ~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRP 201 (522)
T TIGR01211 122 ARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRP 201 (522)
T ss_pred HHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcC
Q ss_pred -----------------EEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHH
Q 012098 213 -----------------RINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIF 275 (471)
Q Consensus 213 -----------------Rin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~ 275 (471)
||..+..+........ .+| |.+.++..++++.+++. ++. +++|+..|--..+.+.+
T Consensus 202 D~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~---inR-ght~~~v~~Ai~~lr~~--G~~-v~~~LM~GLPgqt~e~~ 274 (522)
T TIGR01211 202 DYCREEHIDRMLKLGATRVELGVQTIYNDILER---TKR-GHTVRDVVEATRLLRDA--GLK-VVYHIMPGLPGSSFERD 274 (522)
T ss_pred CcCCHHHHHHHHHcCCCEEEEECccCCHHHHHH---hCC-CCCHHHHHHHHHHHHHc--CCe-EEEEeecCCCCCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEecC-------CCCcCCCCCCCCCCCHHHHHHHHHHHHh
Q 012098 276 RDAAVLMVNYIDKIRAQGFEVDYLNIGG-------GLGIDYYHTGAVLPKPRNLIDTVRELVL 331 (471)
Q Consensus 276 ~~~~~~~~~~~~~l~~~g~~l~~ldiGG-------Gl~i~y~~~~~~~~~~~~~~~~i~~~~~ 331 (471)
.+.++.+.+... ..++.|.+=. .|.-.|.......++.+++++.+.....
T Consensus 275 ~~t~~~l~~~~~------l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~ 331 (522)
T TIGR01211 275 LEMFREIFEDPR------FKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKR 331 (522)
T ss_pred HHHHHHHHhccC------CCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHH
No 155
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=41.80 E-value=3.3e+02 Score=26.26 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=53.7
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEe-ec-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHC-HL-GSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV 315 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~-H~-Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~ 315 (471)
+.+++.++.+.+++++ ++.+. +|. +. +....+.+..++.++.+.+.++..++.|.+ ++.+-.|.... ...
T Consensus 43 ~~~~~~~l~~~~~~~~-~~~i~-~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~g~~~~----~~~ 114 (279)
T cd00019 43 KKERAEKFKAIAEEGP-SICLS-VHAPYLINLASPDKEKREKSIERLKDEIERCEELGIR--LLVFHPGSYLG----QSK 114 (279)
T ss_pred CHHHHHHHHHHHHHcC-CCcEE-EEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCCCCC----CCH
Confidence 5577777777777663 33332 222 11 111234456677777777777777777765 55554443110 000
Q ss_pred CCCHHHHHHHHHHHH---hcCCcEEEEccc
Q 012098 316 LPKPRNLIDTVRELV---LSRNLNLIIEPG 342 (471)
Q Consensus 316 ~~~~~~~~~~i~~~~---~~~~~~l~~EpG 342 (471)
-...+.+.+.++++. +++|+++.+|+-
T Consensus 115 ~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 115 EEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 012344555666554 367899999983
No 156
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=41.73 E-value=1.6e+02 Score=28.25 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCH
Q 012098 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKV 272 (471)
Q Consensus 193 el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~ 272 (471)
-+...-+.+++..+.+++.+ | +.. +.++ +-..+...++++.+++.+..+.-+|++.|+.....+.
T Consensus 104 ~i~~af~~ar~~~P~a~l~~--N-dy~------~~~~------~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~ 168 (254)
T smart00633 104 YIEKAFRYAREADPDAKLFY--N-DYN------TEEP------NAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNI 168 (254)
T ss_pred HHHHHHHHHHHhCCCCEEEE--e-ccC------CcCc------cHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCH
Confidence 34445556777777666666 3 100 0000 1112456777888877764588999999987543333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCC--EEEecC
Q 012098 273 DIFRDAAVLMVNYIDKIRAQGFEVD--YLNIGG 303 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~g~~l~--~ldiGG 303 (471)
+ .+.+.++++.+.|.++. -+|+..
T Consensus 169 ~-------~~~~~l~~~~~~g~pi~iTE~dv~~ 194 (254)
T smart00633 169 A-------EIRAALDRFASLGLEIQITELDISG 194 (254)
T ss_pred H-------HHHHHHHHHHHcCCceEEEEeecCC
Confidence 3 23444555666666554 456554
No 157
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=41.06 E-value=4.1e+02 Score=27.08 Aligned_cols=134 Identities=12% Similarity=0.104 Sum_probs=70.5
Q ss_pred CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 90 EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 90 ~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
.|||.+ ++.+.+.+-++.+++.++. ..+ ..+=+||. -.+.+.++..+++|+ .+|.+.-.
T Consensus 64 GGTPs~-L~~~~l~~ll~~i~~~~~~-~~e--itiE~nP~---------------~lt~e~l~~lk~~G~--nrisiGvQ 122 (353)
T PRK05904 64 GGTPNC-LNDQLLDILLSTIKPYVDN-NCE--FTIECNPE---------------LITQSQINLLKKNKV--NRISLGVQ 122 (353)
T ss_pred CCcccc-CCHHHHHHHHHHHHHhcCC-CCe--EEEEeccC---------------cCCHHHHHHHHHcCC--CEEEEecc
Confidence 378874 7888888888888776643 222 23334542 114455666666776 35665333
Q ss_pred CCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 170 GKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 170 ~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
..+++.++.. ..+ .+.+++....+.+++.|-. .|.+-+-.+. -|-+.+++.+.++.+
T Consensus 123 S~~d~vL~~l-~R~-----~~~~~~~~ai~~lr~~G~~-~v~~dlI~Gl----------------Pgqt~e~~~~tl~~~ 179 (353)
T PRK05904 123 SMNNNILKQL-NRT-----HTIQDSKEAINLLHKNGIY-NISCDFLYCL----------------PILKLKDLDEVFNFI 179 (353)
T ss_pred cCCHHHHHHc-CCC-----CCHHHHHHHHHHHHHcCCC-cEEEEEeecC----------------CCCCHHHHHHHHHHH
Confidence 3344444433 222 3455555555556655532 1222211110 134556777767766
Q ss_pred HcCC-CCceEEEEEeecCC
Q 012098 250 KAHP-NELKLVGAHCHLGS 267 (471)
Q Consensus 250 ~~~~-~~l~l~Glh~H~Gs 267 (471)
.+.+ .++.+..+....|+
T Consensus 180 ~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 180 LKHKINHISFYSLEIKEGS 198 (353)
T ss_pred HhcCCCEEEEEeeEecCCC
Confidence 5543 25666666666665
No 158
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=40.84 E-value=1.3e+02 Score=30.59 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=29.2
Q ss_pred cHHHHHHHHhCCC---EE---EeCC-HHHHHHHHHHHHHcCCceEEEE
Q 012098 172 LLEDLVLAAQEGV---FV---NVDS-EFDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i---~vDs-~~el~~l~~~a~~~g~~~~V~l 212 (471)
+......|++.|+ ++ |+.+ .+.++.+.+.|++.+.+++|++
T Consensus 90 d~~lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 90 DYRLALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred CHHHHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEec
Confidence 4455556677765 45 5777 8889999999999887666553
No 159
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=40.68 E-value=3.5e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=20.3
Q ss_pred CCHhHHHHHHHHHHcCCCCc-eEEEEEeecC
Q 012098 237 IRNEKLQWFLDAVKAHPNEL-KLVGAHCHLG 266 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l-~l~Glh~H~G 266 (471)
..++++.++++.+++.-... ...|+|+|--
T Consensus 169 ~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~ 199 (268)
T cd07940 169 LTPEEFGELIKKLKENVPNIKVPISVHCHND 199 (268)
T ss_pred CCHHHHHHHHHHHHHhCCCCceeEEEEecCC
Confidence 46889999999887642121 3568888853
No 160
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.33 E-value=2.5e+02 Score=27.72 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhc--CCCceEEEecccCCcH-HHHHHHHHcCC------ce-----------EEcCHHHHHHHHHCCCC
Q 012098 101 QITRNVEAYKQALE--GLNSIIGYAIKANNNY-KILEHLRKLGC------GA-----------VLVSGNELRLALRAGFD 160 (471)
Q Consensus 101 ~l~~n~~~~~~a~~--~~~~~i~yavKaN~~~-~vl~~l~~~G~------g~-----------~vaS~~El~~a~~~G~~ 160 (471)
.+.-..++|.+++. +.+.+++-.=|+-|-. .+.+.....|- |+ ...+..++....+.-.+
T Consensus 102 GIAT~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~vLikdnHi~~~~i~~av~~~r~~~~ 181 (278)
T PRK08385 102 GIATETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAILIKDNHLALVPLEEAIRRAKEFSV 181 (278)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHHHhcCCcccCCCCcccEEEccCHHHHHHHHHHHHHHHHhCC
Confidence 34444556666664 3456777777888853 33333333432 21 11244443333333333
Q ss_pred CCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCH--HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCC
Q 012098 161 PTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE--FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237 (471)
Q Consensus 161 ~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~--~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi 237 (471)
...|..-. .+.+++..|++.|.. +.+|++ ++++.+.+..++.+.+.++.+.. +| |+
T Consensus 182 ~~kIeVEv--~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~~~~~~~lea-------------SG------GI 240 (278)
T PRK08385 182 YKVVEVEV--ESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKREGLRERVKIEV-------------SG------GI 240 (278)
T ss_pred CCcEEEEe--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcCcCCCEEEEE-------------EC------CC
Confidence 34465544 367888888888874 566655 45555555444444333454543 23 78
Q ss_pred CHhHHHHHHH
Q 012098 238 RNEKLQWFLD 247 (471)
Q Consensus 238 ~~~el~~~l~ 247 (471)
+.+.+.++.+
T Consensus 241 ~~~ni~~yA~ 250 (278)
T PRK08385 241 TPENIEEYAK 250 (278)
T ss_pred CHHHHHHHHH
Confidence 8888776544
No 161
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=40.32 E-value=1.4e+02 Score=28.53 Aligned_cols=15 Identities=27% Similarity=0.716 Sum_probs=11.2
Q ss_pred HHHHhcCCcEEEEcc
Q 012098 327 RELVLSRNLNLIIEP 341 (471)
Q Consensus 327 ~~~~~~~~~~l~~Ep 341 (471)
.+...++|+++.+||
T Consensus 130 ~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 130 ANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHcCCEEEEEe
Confidence 333456899999998
No 162
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=39.88 E-value=51 Score=31.16 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=38.0
Q ss_pred eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 188 vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
..+++|+..+.++|.+.|- .+.| || ||+.+.+.++++.+.+. ++..+-=|.+
T Consensus 160 l~~leE~~avA~aca~~g~------~lEP-----------TG------GIdl~Nf~~I~~i~lda--Gv~kviPHIY 211 (236)
T TIGR03581 160 LKHLEEYAAVAKACAKHGF------YLEP-----------TG------GIDLDNFEEIVQIALDA--GVEKVIPHVY 211 (236)
T ss_pred cccHHHHHHHHHHHHHcCC------ccCC-----------CC------CccHHhHHHHHHHHHHc--CCCeeccccc
Confidence 7889999999988876652 2333 34 89999999999988776 6776555543
No 163
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=39.68 E-value=2e+02 Score=29.75 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCCceEEEEEe----ec----CCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHC----HL----GSTI-TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~----H~----Gs~~-~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
+.++.+.++++ ++.+.++-. |- ||-. .|.+.-+.+++...+.++..++.|.+ .|++=+|=|..|...
T Consensus 71 ~~~~~~~l~~~--GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~--~I~iW~~DG~~~~g~ 146 (378)
T TIGR02635 71 YEELARYAEEL--GLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK--DISLWLADGTNYPGQ 146 (378)
T ss_pred HHHHHHHHHHc--CCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eEEEecCCcCcCCcc
Confidence 44444555666 677775322 32 5543 34555566777777777766677765 344333334444321
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CCcEEEEcc
Q 012098 313 GAVLPKPRNLIDTVRELVLS--RNLNLIIEP 341 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~--~~~~l~~Ep 341 (471)
...-+..+.+.+.+++++.. .++++.+||
T Consensus 147 ~~~~~a~~rl~esL~eI~~~~~~~v~~~iE~ 177 (378)
T TIGR02635 147 DDFRSRKDRLEESLAEVYEHLGADMRLLIEY 177 (378)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCEEEEec
Confidence 21111245567777777653 478999977
No 164
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=39.49 E-value=2.2e+02 Score=31.29 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH--hCC-CEEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA--QEG-VFVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~--~~g-v~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.+.+.|..+-+- ++.-++.+++.|. +++| |...+++-++.|- +.. +.+++|+.++-..+...+++.
T Consensus 413 ~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~---~v~~-GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 413 QVIGRLLMANKMRITVLERDISAVNLMRKYGY---KVYY-GDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHHhCCC---eEEE-eeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 46788888888765444 4555666666664 3455 6666666666652 233 347889988888888888888
Q ss_pred CCceEEEEEEec
Q 012098 205 GKKVNVLLRINP 216 (471)
Q Consensus 205 g~~~~V~lRin~ 216 (471)
++..+|..|.+.
T Consensus 489 ~p~~~IiaRa~~ 500 (601)
T PRK03659 489 FPHLHILARARG 500 (601)
T ss_pred CCCCeEEEEeCC
Confidence 888999999874
No 165
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=39.24 E-value=3.6e+02 Score=25.95 Aligned_cols=125 Identities=17% Similarity=0.131 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCC-ceEEc----CHHH---HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEe-CC---------
Q 012098 130 YKILEHLRKLGC-GAVLV----SGNE---LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV-DS--------- 190 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~va----S~~E---l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~v-Ds--------- 190 (471)
..+++.|.+.|+ .+|++ +..| ++.+.+.+ +..++.-... ...++++.+.+.|+. +.+ .+
T Consensus 23 ~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~-~~~~~~~~~r-~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~ 100 (259)
T cd07939 23 LAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALG-LPARLIVWCR-AVKEDIEAALRCGVTAVHISIPVSDIHLAHK 100 (259)
T ss_pred HHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEecc-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHH
Confidence 578888889997 57774 2233 22232333 2233432232 246788889888762 222 12
Q ss_pred --------HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEE
Q 012098 191 --------EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAH 262 (471)
Q Consensus 191 --------~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh 262 (471)
++.+....+.+++.|.. +++++.. .++ .+++.+.++++.+.+. +...+.+.
T Consensus 101 ~~~~~~~~~~~~~~~i~~a~~~G~~----v~~~~~~-------------~~~--~~~~~~~~~~~~~~~~--G~~~i~l~ 159 (259)
T cd07939 101 LGKDRAWVLDQLRRLVGRAKDRGLF----VSVGAED-------------ASR--ADPDFLIEFAEVAQEA--GADRLRFA 159 (259)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCe----EEEeecc-------------CCC--CCHHHHHHHHHHHHHC--CCCEEEeC
Confidence 23344555666666643 3444321 222 5778888888888776 45555554
Q ss_pred eecCCCCCCHHHHHHHH
Q 012098 263 CHLGSTITKVDIFRDAA 279 (471)
Q Consensus 263 ~H~Gs~~~~~~~~~~~~ 279 (471)
=..|. ..++.+.+.+
T Consensus 160 DT~G~--~~P~~v~~lv 174 (259)
T cd07939 160 DTVGI--LDPFTTYELI 174 (259)
T ss_pred CCCCC--CCHHHHHHHH
Confidence 44543 3455444433
No 166
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.03 E-value=2.6e+02 Score=29.22 Aligned_cols=142 Identities=21% Similarity=0.285 Sum_probs=70.7
Q ss_pred HHHHHH---HHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcc
Q 012098 149 NELRLA---LRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPY 225 (471)
Q Consensus 149 ~El~~a---~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~ 225 (471)
.|++.+ .++|.+ -|.=...+.+..+++..+-....+-|.+.---+.+.+..++.+
T Consensus 78 ~E~~K~~~A~~~GAD--tiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~-------------------- 135 (431)
T PRK13352 78 EELEKAKVAVKYGAD--TIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYG-------------------- 135 (431)
T ss_pred HHHHHHHHHHHcCCC--eEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCC--------------------
Confidence 454444 456664 4543334445667776654444455566555555554432211
Q ss_pred cccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC
Q 012098 226 VATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305 (471)
Q Consensus 226 ~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl 305 (471)
+-.-++.+++.+.++.=.+. ++.+.-||+ |-. + +.++.+++.+.-+.+++=||.|
T Consensus 136 -------~~~~mt~d~~~~~ie~qa~~--GVDfmTiHc--Gi~-------~-------~~~~~~~~~~R~~giVSRGGs~ 190 (431)
T PRK13352 136 -------SVVDMTEDDLFDVIEKQAKD--GVDFMTIHC--GVT-------R-------ETLERLKKSGRIMGIVSRGGSF 190 (431)
T ss_pred -------ChhhCCHHHHHHHHHHHHHh--CCCEEEEcc--chh-------H-------HHHHHHHhcCCccCeecCCHHH
Confidence 00125667777766642222 788877665 311 1 2223344445556677777777
Q ss_pred CcCC-CCCCCCCCCHHHHHHHHHHHHhcCCcEEE
Q 012098 306 GIDY-YHTGAVLPKPRNLIDTVRELVLSRNLNLI 338 (471)
Q Consensus 306 ~i~y-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 338 (471)
-+.+ ...+...|.+ +.++.+-+++.+|+++|.
T Consensus 191 ~~~WM~~n~~ENPly-e~fD~lLeI~~~yDVtlS 223 (431)
T PRK13352 191 LAAWMLHNNKENPLY-EHFDYLLEILKEYDVTLS 223 (431)
T ss_pred HHHHHHHcCCcCchH-HHHHHHHHHHHHhCeeee
Confidence 4322 1222223333 234555556666666554
No 167
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=38.97 E-value=1e+02 Score=31.11 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=35.7
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
+.++.+..|....|++|+++.. ...-|.+.++..++++.+.+. ++.+ ||+|.|.
T Consensus 211 v~aIR~~vG~d~~v~vri~~~~-------------~~~~g~~~~e~~~ia~~Le~~--gvd~--iev~~g~ 264 (336)
T cd02932 211 VDAVRAVWPEDKPLFVRISATD-------------WVEGGWDLEDSVELAKALKEL--GVDL--IDVSSGG 264 (336)
T ss_pred HHHHHHHcCCCceEEEEEcccc-------------cCCCCCCHHHHHHHHHHHHHc--CCCE--EEECCCC
Confidence 3333334577788999998641 223477888888888888776 5655 4656554
No 168
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=38.81 E-value=2.7e+02 Score=29.74 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
+++.++.+++..+++.- ++ .+++|+|--.
T Consensus 179 l~P~~v~~Lv~~lk~~~-~v-pI~~H~Hnt~ 207 (467)
T PRK14041 179 LTPKRAYELVKALKKKF-GV-PVEVHSHCTT 207 (467)
T ss_pred cCHHHHHHHHHHHHHhc-CC-ceEEEecCCC
Confidence 36788999999888653 43 4688888543
No 169
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=38.78 E-value=2.2e+02 Score=30.63 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHc--CCc---eEEcCHHHHHHHHHCCCC
Q 012098 131 KILEHLRKL--GCG---AVLVSGNELRLALRAGFD 160 (471)
Q Consensus 131 ~vl~~l~~~--G~g---~~vaS~~El~~a~~~G~~ 160 (471)
..++.+.+. +.- -+|+|.++++.+.++|++
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD 312 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVD 312 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcC
Confidence 445555553 222 246677777777777764
No 170
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=38.54 E-value=42 Score=29.13 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHc----CCCCCEEEecCCCCc
Q 012098 278 AAVLMVNYIDKIRAQ----GFEVDYLNIGGGLGI 307 (471)
Q Consensus 278 ~~~~~~~~~~~l~~~----g~~l~~ldiGGGl~i 307 (471)
.+.++.++++.+.+. .....++|+|+|.|.
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~Gy 38 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGY 38 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhH
Confidence 445555665554332 446779999999983
No 171
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=38.53 E-value=3.8e+02 Score=26.05 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHC--CCCCCcEEEeCCCC---cHHHHHHHHhCCCEE---EeCC--------
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRA--GFDPTKCIFNGNGK---LLEDLVLAAQEGVFV---NVDS-------- 190 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~--G~~~~~Ii~~g~~k---~~~~l~~a~~~gv~i---~vDs-------- 190 (471)
.++++.+.+. ++ .+|..+..-++.|+++ |. .|+.+-.+. .++.+..+.++|+.+ ..|+
T Consensus 58 ~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~---~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~ 134 (261)
T PRK07535 58 EWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGP---PLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAE 134 (261)
T ss_pred HHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCC---CEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHH
Confidence 3566666543 43 6888889999999987 64 355443332 344566677888642 2321
Q ss_pred --HHHHHHHHHHHHHcCCce-EEEEEEecC
Q 012098 191 --EFDLENIVVASRIAGKKV-NVLLRINPD 217 (471)
Q Consensus 191 --~~el~~l~~~a~~~g~~~-~V~lRin~~ 217 (471)
++.++.+.+.+.+.|... ++. ++|+
T Consensus 135 ~~~~~l~~~v~~a~~~GI~~~~Ii--lDPg 162 (261)
T PRK07535 135 DRLAVAKELVEKADEYGIPPEDIY--IDPL 162 (261)
T ss_pred HHHHHHHHHHHHHHHcCCCHhHEE--EeCC
Confidence 466677777777777542 333 4554
No 172
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=38.13 E-value=1e+02 Score=31.80 Aligned_cols=63 Identities=14% Similarity=0.017 Sum_probs=37.1
Q ss_pred HHcCCceEEEEEEecCCCCCCCcc-cccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 202 RIAGKKVNVLLRINPDVDPQVHPY-VATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 202 ~~~g~~~~V~lRin~~~~~~~~~~-~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
+..|..+.|++|+++......... -..+.+....|++.++..++++.+.+. ++.+ ||.|.|+.
T Consensus 213 ~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~--gvD~--l~vs~g~~ 276 (382)
T cd02931 213 ARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEA--GYDA--LDVDAGSY 276 (382)
T ss_pred HhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHh--CCCE--EEeCCCCC
Confidence 345667889999996421100000 000011235689999999999988876 4555 67776653
No 173
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=38.10 E-value=1.6e+02 Score=26.45 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=43.9
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------HHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------LEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|----+.+|+..+.+.+.+.--|++++.+.. .+.-+.|...|+. ..+++.+|++...
T Consensus 77 GDG~f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l 156 (178)
T cd02014 77 GDGGFAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAAL 156 (178)
T ss_pred cchHHHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHH
Confidence 443334457888888887776555566553211 1222344456875 7899999998876
Q ss_pred HHHHHcCCceEEEEEEe
Q 012098 199 VASRIAGKKVNVLLRIN 215 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin 215 (471)
+.+.+.+.+ .+|.+.
T Consensus 157 ~~a~~~~~p--~liev~ 171 (178)
T cd02014 157 DEALAADGP--VVIDVV 171 (178)
T ss_pred HHHHhCCCC--EEEEEE
Confidence 666554433 344444
No 174
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=38.02 E-value=4.1e+02 Score=26.30 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=71.4
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCC-CCCHhHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF-GIRNEKLQWFLDA 248 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKf-Gi~~~el~~~l~~ 248 (471)
.+.|..|.+.+ |. +++.+++.++.+.++|++.+. .|.|.+.++ .-+| | ..+.+...+..
T Consensus 7 k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIl~~~~~--------------~~~~~~-~~~~~~~~~~~ 69 (286)
T PRK08610 7 KEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENA--PVILGVSEG--------------AARYMS-GFYTVVKMVEG 69 (286)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC--CEEEEcCcc--------------HHhhcC-cHHHHHHHHHH
Confidence 45667777766 43 899999999999999998765 567777543 2233 2 12334444444
Q ss_pred HHcCCCCc-eEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---
Q 012098 249 VKAHPNEL-KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID--- 324 (471)
Q Consensus 249 l~~~~~~l-~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~--- 324 (471)
+.+.. .. -.+.||.--| .+.+..+.++ +.|++-=++| |.-+ | +++=++
T Consensus 70 ~A~~~-~~~vPV~lHLDHg---~~~e~i~~ai-----------~~GftSVM~D-gS~l-----------~-~eeNi~~T~ 121 (286)
T PRK08610 70 LMHDL-NITIPVAIHLDHG---SSFEKCKEAI-----------DAGFTSVMID-ASHS-----------P-FEENVATTK 121 (286)
T ss_pred HHHHc-CCCCCEEEECCCC---CCHHHHHHHH-----------HcCCCEEEEe-CCCC-----------C-HHHHHHHHH
Confidence 33321 22 2455655332 2444333221 2365544566 3322 2 233233
Q ss_pred HHHHHHhcCCcEEEEccccee
Q 012098 325 TVRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 325 ~i~~~~~~~~~~l~~EpGR~l 345 (471)
.+.+.+...|+.+-.|.|+--
T Consensus 122 ~vve~Ah~~gv~VEaElG~vg 142 (286)
T PRK08610 122 KVVEYAHEKGVSVEAELGTVG 142 (286)
T ss_pred HHHHHHHHcCCEEEEEEeccC
Confidence 334445568899999999864
No 175
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=37.45 E-value=1.8e+02 Score=27.75 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEe-cCCCCcCCCCCCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI-GGGLGIDYYHTGAVLPK 318 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldi-GGGl~i~y~~~~~~~~~ 318 (471)
+.+.++++.+++.+..+-|.||...-|-+.. . ..+..+++.+++.|++--+|++ .-| .+..+-+
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh-~-------~Hl~al~~~a~~~gv~~V~vH~f~DG-------RDt~P~S 78 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHSH-I-------DHLFALIKLAKKQGVKKVYVHAFTDG-------RDTPPKS 78 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS---H-------HHHHHHHHHHHHTT-SEEEEEEEE-S-------SSS-TTT
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCcccc-H-------HHHHHHHHHHHHcCCCEEEEEEecCC-------CCCCcch
Confidence 5678888888876557889999887765432 2 2334455556677765223442 111 1222225
Q ss_pred HHHHHHHHHHHHhcCCc-EEEEcccceee
Q 012098 319 PRNLIDTVRELVLSRNL-NLIIEPGRSLI 346 (471)
Q Consensus 319 ~~~~~~~i~~~~~~~~~-~l~~EpGR~lv 346 (471)
...+++.+.+.+.+.+. +|..=.|||.+
T Consensus 79 ~~~yl~~l~~~l~~~~~g~IAsv~GRyya 107 (223)
T PF06415_consen 79 ALKYLEELEEKLAEIGIGRIASVSGRYYA 107 (223)
T ss_dssp HHHHHHHHHHHHHHHTCTEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhhCCceEEEEeceeee
Confidence 67788888888877654 77777788764
No 176
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.34 E-value=3.6e+02 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=28.6
Q ss_pred cHHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+...++..++.|. ++.+++...+.++.+..++.|. +.+|=+||.
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~--k~GlalnP~ 116 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGC--QAGVVLNPA 116 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCC--cEEEEeCCC
Confidence 3456666667664 3566766677777777777765 567777764
No 177
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=36.51 E-value=1.8e+02 Score=26.57 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=43.9
Q ss_pred EcCHHHHHHHHHCCC-CCCcEEEeCCCC------------cHHHHHHHHhCCCE-EE-eCCHHHHHHHHHHHHHcCCceE
Q 012098 145 LVSGNELRLALRAGF-DPTKCIFNGNGK------------LLEDLVLAAQEGVF-VN-VDSEFDLENIVVASRIAGKKVN 209 (471)
Q Consensus 145 vaS~~El~~a~~~G~-~~~~Ii~~g~~k------------~~~~l~~a~~~gv~-i~-vDs~~el~~l~~~a~~~g~~~~ 209 (471)
.-+.+|+..+.+.+. +-.-|++++.+. ..+..+.|...|+. .. +++.++++...+ +.+.+.+.-
T Consensus 72 ~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~G~~~~~~v~~~~~l~~al~-a~~~~~p~l 150 (181)
T TIGR03846 72 LMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRTDLELVAKAAGIRNVEKVADEEELRDALK-ALAMKGPTF 150 (181)
T ss_pred HhhhhHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCCCHHHHHHHCCCCeEEEeCCHHHHHHHHH-HHcCCCCEE
Confidence 346689999887774 544456554320 22334455567874 55 899999988777 555444444
Q ss_pred EEEEEecC
Q 012098 210 VLLRINPD 217 (471)
Q Consensus 210 V~lRin~~ 217 (471)
|-+++++.
T Consensus 151 i~v~~~~~ 158 (181)
T TIGR03846 151 IHVKVKPG 158 (181)
T ss_pred EEEEeCCC
Confidence 55566543
No 178
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=36.48 E-value=3.5e+02 Score=26.09 Aligned_cols=97 Identities=15% Similarity=0.215 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTI--TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP 317 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~--~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~ 317 (471)
+.+...++.++.. +...+ -+|.|+.. ...+.+...++.+.++.+.+++.|+.+.+=+.++.+. .+ ..
T Consensus 85 ~~~~~~i~~A~~l--G~~~v--~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~-~~------~~ 153 (279)
T cd00019 85 ERLKDEIERCEEL--GIRLL--VFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGN-EI------GS 153 (279)
T ss_pred HHHHHHHHHHHHc--CCCEE--EECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC-CC------CC
Confidence 4456666666666 45544 45667543 2233445555556666665555676654445443321 01 22
Q ss_pred CHHHHHHHHHHHHhcCCcEEEEcccceeec
Q 012098 318 KPRNLIDTVRELVLSRNLNLIIEPGRSLIA 347 (471)
Q Consensus 318 ~~~~~~~~i~~~~~~~~~~l~~EpGR~lva 347 (471)
++.++.+.+++.-....+.+.+-+|-....
T Consensus 154 t~~~~~~li~~v~~~~~~g~~lD~~h~~~~ 183 (279)
T cd00019 154 SFEELKEIIDLIKEKPRVGVCIDTCHIFAA 183 (279)
T ss_pred CHHHHHHHHHhcCCCCCeEEEEEhhhHHhc
Confidence 455555555443213457788888876543
No 179
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=36.46 E-value=3.2e+02 Score=26.08 Aligned_cols=97 Identities=13% Similarity=0.039 Sum_probs=56.0
Q ss_pred CCce-EEcCHHHHHHHHHCCCCCCcEEEeCCCC-------------------------------c-HHHHHHHHhCCCE-
Q 012098 140 GCGA-VLVSGNELRLALRAGFDPTKCIFNGNGK-------------------------------L-LEDLVLAAQEGVF- 185 (471)
Q Consensus 140 G~g~-~vaS~~El~~a~~~G~~~~~Ii~~g~~k-------------------------------~-~~~l~~a~~~gv~- 185 (471)
|.|- ---+.+||..|.+.+.+..-|++++... . .+..+.|...|+.
T Consensus 88 GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~ 167 (235)
T cd03376 88 GDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPY 167 (235)
T ss_pred cCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCcE
Confidence 5544 3456788888888777655555554210 1 1233445556764
Q ss_pred ---EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 186 ---VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 186 ---i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
+.+++.+|++...+.+.+...+ .+|.+.... ...+|+.++...+..+.+.+
T Consensus 168 ~~~~~v~~~~el~~al~~a~~~~gP--~lIev~~~C-------------~~~~~~~~~~~~~~~~~~~~ 221 (235)
T cd03376 168 VATASVAYPEDLYKKVKKALSIEGP--AYIHILSPC-------------PTGWRFDPSKTIEIARLAVE 221 (235)
T ss_pred EEEEcCCCHHHHHHHHHHHHhCCCC--EEEEEECCC-------------CCCCCCCHHHHHHHHHHHHh
Confidence 4699999998877766554332 344444321 34567776655555555444
No 180
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=36.39 E-value=4.3e+02 Score=26.03 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
.+.|..|.+.+ |. +++.+++.++.+.++|++.+. +|.|.+.+
T Consensus 5 ~~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~--PvIl~~~~ 49 (282)
T TIGR01859 5 KEILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENS--PVIIQVSE 49 (282)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCC--CEEEEcCc
Confidence 35567777665 43 899999999999999998764 56666654
No 181
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=36.37 E-value=3.6e+02 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=21.7
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
.+.+.++.+++..+++.- + ..+++|+|--+.
T Consensus 174 ~~~P~~v~~lv~~lk~~~-~-~pi~~H~Hnt~G 204 (582)
T TIGR01108 174 ILTPKAAYELVSALKKRF-G-LPVHLHSHATTG 204 (582)
T ss_pred CcCHHHHHHHHHHHHHhC-C-CceEEEecCCCC
Confidence 357888999998887642 3 346889886443
No 182
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=36.34 E-value=76 Score=33.24 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=29.3
Q ss_pred CCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHh--cCCcE--EEEcccce
Q 012098 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL--SRNLN--LIIEPGRS 344 (471)
Q Consensus 295 ~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~--~~~~~--l~~EpGR~ 344 (471)
.++.|-+|||.+.-... ...+.+.+.|++.+. ..+.+ +-+-|+..
T Consensus 87 ~v~ti~~GGGTPslL~~-----~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~ 135 (416)
T COG0635 87 EVKTIYFGGGTPSLLSP-----EQLERLLKALRELFNDLDPDAEITIEANPGTV 135 (416)
T ss_pred eEEEEEECCCccccCCH-----HHHHHHHHHHHHhcccCCCCceEEEEeCCCCC
Confidence 58999999999753321 135678888888884 32344 44557754
No 183
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=35.98 E-value=4e+02 Score=25.65 Aligned_cols=53 Identities=25% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--HHHHHHHHhCCCE
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNGKL--LEDLVLAAQEGVF 185 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--~~~l~~a~~~gv~ 185 (471)
.++++.+.+. ++ .+|......++.|+++|. .|+..-.+.. ++.++.+.++|+.
T Consensus 65 ~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~---~iINdis~~~~~~~~~~l~~~~~~~ 122 (258)
T cd00423 65 IPVLRALAGEPDVPISVDTFNAEVAEAALKAGA---DIINDVSGGRGDPEMAPLAAEYGAP 122 (258)
T ss_pred HHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCC---CEEEeCCCCCCChHHHHHHHHcCCC
Confidence 3566666654 43 678888999999999984 3665443332 4556667778763
No 184
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=34.86 E-value=4.7e+02 Score=27.90 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=9.3
Q ss_pred EEcCHHHHHHHHHCCC
Q 012098 144 VLVSGNELRLALRAGF 159 (471)
Q Consensus 144 ~vaS~~El~~a~~~G~ 159 (471)
.|.|.++++.+.++|+
T Consensus 276 ~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 276 NVATAEAARALIEAGA 291 (486)
T ss_pred ccCCHHHHHHHHHcCC
Confidence 4555666666666655
No 185
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=34.76 E-value=1.9e+02 Score=26.12 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=38.7
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEeCCCCcH--------------------HHHHHHHhCCCE-EEeCCHHHHHHHHHHHHH
Q 012098 145 LVSGNELRLALRAGFDPTKCIFNGNGKLL--------------------EDLVLAAQEGVF-VNVDSEFDLENIVVASRI 203 (471)
Q Consensus 145 vaS~~El~~a~~~G~~~~~Ii~~g~~k~~--------------------~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~ 203 (471)
--+..|+..+.+.+.+.--|++++.+... +..+.|...|+. ..+++.+|++...+.+.+
T Consensus 79 ~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~ 158 (177)
T cd02010 79 MMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESADDLLPVLERALA 158 (177)
T ss_pred HhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHh
Confidence 34678888877777765555555532211 122344456875 789999999877776655
Q ss_pred cCC
Q 012098 204 AGK 206 (471)
Q Consensus 204 ~g~ 206 (471)
.+.
T Consensus 159 ~~~ 161 (177)
T cd02010 159 ADG 161 (177)
T ss_pred CCC
Confidence 443
No 186
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=34.75 E-value=2.5e+02 Score=28.88 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCC
Q 012098 202 RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 253 (471)
Q Consensus 202 ~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~ 253 (471)
+..+....|++|+++..- ...-|.+.+|..++++.+++.+
T Consensus 211 ~~vg~~~~vg~Rls~~d~------------~~~~g~~~~e~~~la~~L~~~G 250 (363)
T COG1902 211 EAVGADFPVGVRLSPDDF------------FDGGGLTIEEAVELAKALEEAG 250 (363)
T ss_pred HHhCCCceEEEEECcccc------------CCCCCCCHHHHHHHHHHHHhcC
Confidence 345666679999997521 1222889999999999998873
No 187
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=34.63 E-value=3.4e+02 Score=27.13 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=73.0
Q ss_pred EEeHHH-HHHHHHHHHHHhcCC-CceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcE-EEeCCCCc
Q 012098 96 LYSKPQ-ITRNVEAYKQALEGL-NSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKC-IFNGNGKL 172 (471)
Q Consensus 96 v~d~~~-l~~n~~~~~~a~~~~-~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~I-i~~g~~k~ 172 (471)
++|++. +++|++.+.+++... .--....+.=-.+..+++.+++.|+.+-.-+-+++..++...++...+ +|.|-+-.
T Consensus 131 ~idld~~~~~Nl~~vA~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGa 210 (309)
T cd01516 131 VIDLDAPVAENLRAVAKALGKPVEDLTVVVLDRPRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGA 210 (309)
T ss_pred eecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCC
Confidence 455544 789999999887642 112345556667889999999999999999999999999877765545 56676666
Q ss_pred HHHHHHH--HhC-C--C--EEEeCCHHHHHHHHH
Q 012098 173 LEDLVLA--AQE-G--V--FVNVDSEFDLENIVV 199 (471)
Q Consensus 173 ~~~l~~a--~~~-g--v--~i~vDs~~el~~l~~ 199 (471)
+|-.-.| ++. | + ++...+.+|.++..+
T Consensus 211 PEGVlaAaAlkclGG~~qgrL~~~~~~e~~r~~~ 244 (309)
T cd01516 211 PEGVLAAAALKCLGGEMQGRLLPRNEEERARARE 244 (309)
T ss_pred hHHHHHHHHHHhCCceeEEEECCCCHHHHHHHHH
Confidence 6654433 332 3 2 477888888777654
No 188
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=34.24 E-value=2.9e+02 Score=28.97 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=56.4
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST----ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~----~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
++.+++.++.+.++++ ++.+.-+..|..-. ..+.+.+...++.+.+.++...+.|.+ ++.+=.|....-
T Consensus 173 ~~~~~~~~f~~~~~~~--gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~--~VV~HPGs~~~~--- 245 (413)
T PTZ00372 173 LSDETIDKFKENCKKY--NYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIK--LYNFHPGSTVGQ--- 245 (413)
T ss_pred CCHHHHHHHHHHHHHc--CCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCcCCCC---
Confidence 6678888888888877 46554444554311 235566666777777777777777765 444443432110
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCcEEEEcc
Q 012098 313 GAVLPKPRNLIDTVRELVLS-RNLNLIIEP 341 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~Ep 341 (471)
......++.+.+.+.+.+.. .++.+.+|.
T Consensus 246 ~~~ee~i~~i~e~L~~~la~~~gV~IlLEN 275 (413)
T PTZ00372 246 CSKEEGIKNIADCINKAHEETKSVIIVLEN 275 (413)
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCEEEEec
Confidence 10001245566666665543 468889994
No 189
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=34.03 E-value=4.7e+02 Score=25.82 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=71.5
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.| |. +++.+++.++.+.++|++.+. +|.|.+.++ .-++ ...+.+..++..+
T Consensus 5 k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~s~~--------------~~~~-~~~~~~~~~~~~~ 67 (282)
T TIGR01858 5 KYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRS--PVILAGTPG--------------TFKH-AGTEYIVALCSAA 67 (282)
T ss_pred HHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEeCcc--------------HHhh-CCHHHHHHHHHHH
Confidence 35667777766 43 899999999999999998765 567777643 1122 1234455555544
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i 326 (471)
.+.. .+ .+.|| +-+. .+.+..++++ +.|++-=++| |.-+ | +++=++ .+
T Consensus 68 a~~~-~V-PValH--LDHg-~~~e~i~~ai-----------~~GFtSVM~D-gS~l-----------p-~eeNi~~T~~v 118 (282)
T TIGR01858 68 STTY-NM-PLALH--LDHH-ESLDDIRQKV-----------HAGVRSAMID-GSHF-----------P-FAQNVKLVKEV 118 (282)
T ss_pred HHHC-CC-CEEEE--CCCC-CCHHHHHHHH-----------HcCCCEEeec-CCCC-----------C-HHHHHHHHHHH
Confidence 3322 33 44455 4322 2444332221 2365444555 3222 2 233233 33
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+.....|+.+-.|.|+--
T Consensus 119 v~~Ah~~gv~VEaElG~vg 137 (282)
T TIGR01858 119 VDFCHRQDCSVEAELGRLG 137 (282)
T ss_pred HHHHHHcCCeEEEEEEecC
Confidence 4445568999999999864
No 190
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=34.01 E-value=2.8e+02 Score=30.66 Aligned_cols=83 Identities=12% Similarity=0.162 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH--hCC-CEEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA--QEG-VFVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~--~~g-v~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.+.+.|..+.+. +....+.+++.|. +++| |...+++-++.+- +.. +.+++|+.+.-..+...+++.
T Consensus 413 ~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~---~v~~-GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 413 QIVGRLLLSSGVKMTVLDHDPDHIETLRKFGM---KVFY-GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHHhcCC---eEEE-EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 46788888888765544 5666777777665 3444 7666666665542 223 346889988888888889998
Q ss_pred CCceEEEEEEec
Q 012098 205 GKKVNVLLRINP 216 (471)
Q Consensus 205 g~~~~V~lRin~ 216 (471)
.+..++..|.+.
T Consensus 489 ~p~~~iiaRa~d 500 (621)
T PRK03562 489 FPHLQIIARARD 500 (621)
T ss_pred CCCCeEEEEECC
Confidence 888899999863
No 191
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=33.63 E-value=5.5e+02 Score=26.47 Aligned_cols=132 Identities=10% Similarity=-0.004 Sum_probs=69.0
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
|||++ ++.+.|.+-++.+++.++-.. ..-..+=+|+. -.+.++++..+++|++ +|.+.-..
T Consensus 82 GTPs~-L~~~~L~~ll~~i~~~~~~~~-~~eit~E~~p~---------------~~~~e~L~~l~~~Gvn--risiGvQS 142 (394)
T PRK08898 82 GTPSL-LSAAGLDRLLSDVRALLPLDP-DAEITLEANPG---------------TFEAEKFAQFRASGVN--RLSIGIQS 142 (394)
T ss_pred CCcCC-CCHHHHHHHHHHHHHhCCCCC-CCeEEEEECCC---------------CCCHHHHHHHHHcCCC--eEEEeccc
Confidence 56763 677777777777777664321 01223333332 1245777777888884 67663333
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCC---CHhHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI---RNEKLQWFLD 247 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi---~~~el~~~l~ 247 (471)
.+++.++. +..+ .+.+++....+.+++.+..+.+-+= +|+ +.+++.+-++
T Consensus 143 ~~~~~L~~-l~R~-----~~~~~~~~~i~~~~~~~~~v~~dlI---------------------~GlPgqt~~~~~~~l~ 195 (394)
T PRK08898 143 FNDAHLKA-LGRI-----HDGAEARAAIEIAAKHFDNFNLDLM---------------------YALPGQTLDEALADVE 195 (394)
T ss_pred CCHHHHHH-hCCC-----CCHHHHHHHHHHHHHhCCceEEEEE---------------------cCCCCCCHHHHHHHHH
Confidence 44444443 3222 3455555555555544333322221 233 4566666566
Q ss_pred HHHcCC-CCceEEEEEeecCCC
Q 012098 248 AVKAHP-NELKLVGAHCHLGST 268 (471)
Q Consensus 248 ~l~~~~-~~l~l~Glh~H~Gs~ 268 (471)
.+.+.+ .++.+..+....|+.
T Consensus 196 ~~~~l~p~~is~y~l~~~~gT~ 217 (394)
T PRK08898 196 TALAFGPPHLSLYHLTLEPNTL 217 (394)
T ss_pred HHHhcCCCEEEEeeeEECCCCh
Confidence 655543 256666666666653
No 192
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=33.57 E-value=4.9e+02 Score=25.81 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=73.3
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.| |. +++.+.+.++.+.++|++.+. .|.|.+.++ ..+|-...+.+..++..+
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~~~~--------------~~~~~~g~~~~~~~~~~~ 70 (288)
T TIGR00167 7 KELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKS--PVIIQFSNG--------------AAKYIAGLGAISAMVKAM 70 (288)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCC--CEEEECCcc--------------hhhccCCHHHHHHHHHHH
Confidence 45667777766 43 899999999999999998765 567776543 233312244555554433
Q ss_pred HcCCCCc-eEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---H
Q 012098 250 KAHPNEL-KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---T 325 (471)
Q Consensus 250 ~~~~~~l-~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~ 325 (471)
.+.. +. -.+.||.--| .+.+..++++ +.|++-=++| |.-+ | +++=++ .
T Consensus 71 a~~~-~~~VPV~lHLDHg---~~~e~i~~ai-----------~~GftSVMiD-gS~l-----------p-~eeNi~~T~~ 122 (288)
T TIGR00167 71 SEAY-PYGVPVALHLDHG---ASEEDCAQAV-----------KAGFSSVMID-GSHE-----------P-FEENIELTKK 122 (288)
T ss_pred HHhc-cCCCcEEEECCCC---CCHHHHHHHH-----------HcCCCEEEec-CCCC-----------C-HHHHHHHHHH
Confidence 3221 11 2345554322 3444433332 2355544555 3322 2 233233 3
Q ss_pred HHHHHhcCCcEEEEcccceeecc
Q 012098 326 VRELVLSRNLNLIIEPGRSLIAN 348 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~lva~ 348 (471)
+.+.....|+.+-.|.|+---.+
T Consensus 123 vv~~Ah~~gv~VEaElG~vgg~e 145 (288)
T TIGR00167 123 VVERAHKMGVSVEAELGTLGGEE 145 (288)
T ss_pred HHHHHHHcCCEEEEEEeeccCcc
Confidence 34445568999999999864333
No 193
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.50 E-value=2.9e+02 Score=23.18 Aligned_cols=85 Identities=19% Similarity=0.101 Sum_probs=52.2
Q ss_pred hcCCCceEEEecccCCcHHHHHHHHHcCCceEEcC-H--------HH-HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhC
Q 012098 113 LEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVS-G--------NE-LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182 (471)
Q Consensus 113 ~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS-~--------~E-l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~ 182 (471)
+...++++.|--...+...+++.+.+.+..+-+-| . .| ++.+++.|.+.-.+++.|. ..+++...+.+.
T Consensus 23 l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~-~~~~~~~~~~~~ 101 (122)
T cd02071 23 LRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI-IPPEDYELLKEM 101 (122)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC-CCHHHHHHHHHC
Confidence 44456788998888898999999988886433332 1 22 3333345664334566554 456677788888
Q ss_pred CCEEEeCCHHHHHHHH
Q 012098 183 GVFVNVDSEFDLENIV 198 (471)
Q Consensus 183 gv~i~vDs~~el~~l~ 198 (471)
|+.-.++-=...+.+.
T Consensus 102 G~d~~~~~~~~~~~~~ 117 (122)
T cd02071 102 GVAEIFGPGTSIEEII 117 (122)
T ss_pred CCCEEECCCCCHHHHH
Confidence 9854444333344443
No 194
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.42 E-value=4.9e+02 Score=25.79 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=71.5
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|+.|.+.| |. +++.+++.++.+.++|++.+. .|.|.+.++ .-++ +..+.+..++..+
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~s~~--------------~~~~-~~~~~~~~~~~~~ 69 (286)
T PRK12738 7 KYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRS--PVILAGTPG--------------TFKH-IALEEIYALCSAY 69 (286)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCC--CEEEEcCcc--------------hhhh-CCHHHHHHHHHHH
Confidence 45677777766 43 899999999999999998765 566766532 1122 2234454444443
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH---HHH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI---DTV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~---~~i 326 (471)
.+.. .+ .+.|| +-+ ..+.+..++++ +.|++-=++| |.-+ | +++=+ ..+
T Consensus 70 a~~~-~V-PValH--LDH-g~~~e~i~~ai-----------~~GFtSVM~D-gS~l-----------p-~eeNi~~T~ev 120 (286)
T PRK12738 70 STTY-NM-PLALH--LDH-HESLDDIRRKV-----------HAGVRSAMID-GSHF-----------P-FAENVKLVKSV 120 (286)
T ss_pred HHHC-CC-CEEEE--CCC-CCCHHHHHHHH-----------HcCCCeEeec-CCCC-----------C-HHHHHHHHHHH
Confidence 3322 33 44455 432 23444333332 2355444555 3222 2 23322 334
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+.+...|+.+-.|.|+--
T Consensus 121 v~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 121 VDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred HHHHHHcCCeEEEEEEeeC
Confidence 4455678999999999864
No 195
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=33.26 E-value=1.4e+02 Score=26.55 Aligned_cols=75 Identities=13% Similarity=0.020 Sum_probs=44.5
Q ss_pred CCceEEcCHHHHHHHHHC-CCCCCcEEEeCCCC-----------cHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCC
Q 012098 140 GCGAVLVSGNELRLALRA-GFDPTKCIFNGNGK-----------LLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGK 206 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~-G~~~~~Ii~~g~~k-----------~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~ 206 (471)
|.|----+.+|+..+.+. +.+..-|++++.+. ..+.-+.|...|+. +.+++.+|++...+.+.+.+.
T Consensus 67 GDG~f~m~~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~g 146 (157)
T cd02001 67 GDGSLLMNPGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLLATTG 146 (157)
T ss_pred CchHHHhcccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHHhCCC
Confidence 444334467888888776 46654556554321 12333444456875 789999999988776655444
Q ss_pred ceEEEEEE
Q 012098 207 KVNVLLRI 214 (471)
Q Consensus 207 ~~~V~lRi 214 (471)
+.-|-+++
T Consensus 147 p~vi~v~i 154 (157)
T cd02001 147 PTLLHAPI 154 (157)
T ss_pred CEEEEEEe
Confidence 33344444
No 196
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.98 E-value=3.7e+02 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.002 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCceEEEecccCCc-HHHHHHHHHcC
Q 012098 105 NVEAYKQALEGLNSIIGYAIKANNN-YKILEHLRKLG 140 (471)
Q Consensus 105 n~~~~~~a~~~~~~~i~yavKaN~~-~~vl~~l~~~G 140 (471)
..++|.+++++.++.++-.=|+.|. ..+.+.....|
T Consensus 4 ~t~~~v~~a~~~~~~i~~TRKt~Pg~r~l~~~Av~~G 40 (169)
T PF01729_consen 4 ATRRMVDAAKGTKIRIADTRKTIPGLRPLEKYAVLAG 40 (169)
T ss_dssp HHHHHHHHTTTSSSEEEEGSGS-TTTHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCEEEeecCCCCcccCHHHHHHHHhc
Confidence 4566777787777788888899885 34444444445
No 197
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.84 E-value=4.4e+02 Score=25.04 Aligned_cols=44 Identities=14% Similarity=0.098 Sum_probs=25.8
Q ss_pred cHHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+...++..++.|. .+.+++...+.++.+..++.|. +.+|=+||+
T Consensus 74 P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~--k~GlalnP~ 120 (223)
T PRK08745 74 VDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGC--QAGLVLNPA 120 (223)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCC--ceeEEeCCC
Confidence 3445666666664 3555655556666666666664 566667664
No 198
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=32.64 E-value=5.6e+02 Score=26.25 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=48.4
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
|||+ +++.++|++-++.+++.++-.. ..-..+=+||. ..+...++..+++|+ .+|.+.-..
T Consensus 64 GTPs-~l~~~~L~~ll~~i~~~f~~~~-~~eit~E~~P~---------------~i~~e~L~~l~~~Gv--nrislGvQS 124 (380)
T PRK09057 64 GTPS-LMQPETVAALLDAIARLWPVAD-DIEITLEANPT---------------SVEAGRFRGYRAAGV--NRVSLGVQA 124 (380)
T ss_pred Cccc-cCCHHHHHHHHHHHHHhCCCCC-CccEEEEECcC---------------cCCHHHHHHHHHcCC--CEEEEeccc
Confidence 6887 4788888888888877664321 01223333432 224466777777887 477763333
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcC
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG 205 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g 205 (471)
.+++.++ .+..+ .+.+++....+.+++.+
T Consensus 125 ~~d~vL~-~l~R~-----~~~~~~~~ai~~~~~~~ 153 (380)
T PRK09057 125 LNDADLR-FLGRL-----HSVAEALAAIDLAREIF 153 (380)
T ss_pred CCHHHHH-HcCCC-----CCHHHHHHHHHHHHHhC
Confidence 3444343 33322 35555555555555433
No 199
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=32.59 E-value=5.5e+02 Score=28.28 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCEEEe
Q 012098 278 AAVLMVNYIDKIRAQGFEVDYLNI 301 (471)
Q Consensus 278 ~~~~~~~~~~~l~~~g~~l~~ldi 301 (471)
.++.+.++++.+++.++.==++++
T Consensus 181 mVeSAle~~~i~e~~~f~diviS~ 204 (611)
T PRK02048 181 MVESCMEFLRICVEEHFTDVVISI 204 (611)
T ss_pred HHHHHHHHHHHHHHCCCCcEEEEE
Confidence 445566777777777664334444
No 200
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.58 E-value=4.3e+02 Score=24.86 Aligned_cols=66 Identities=15% Similarity=0.149 Sum_probs=44.4
Q ss_pred cHHHHHHHHH-cC----C--ce-EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE--EEeCCHHHHHHHH
Q 012098 129 NYKILEHLRK-LG----C--GA-VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF--VNVDSEFDLENIV 198 (471)
Q Consensus 129 ~~~vl~~l~~-~G----~--g~-~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~--i~vDs~~el~~l~ 198 (471)
....++.+.+ .+ + |+ .|-+.++++.+.++|. +.+. .|+.+++-++.+.+.|+. .-+.+.+|+....
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA---~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGA---QFIV-SPSFNRETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCC---CEEE-CCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 3455666654 22 2 43 3457889999999886 4554 566788888888888874 4678888876554
No 201
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=32.22 E-value=5.2e+02 Score=28.14 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=60.3
Q ss_pred HHHHHHHhCCC-----EE--EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH
Q 012098 174 EDLVLAAQEGV-----FV--NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246 (471)
Q Consensus 174 ~~l~~a~~~gv-----~i--~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l 246 (471)
..++.|...|. .| -|-|+++.-.+.+-....|.+ .|-++|+ +.+++..++
T Consensus 112 rLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~---yv~fKPG--------------------tIeqI~svi 168 (717)
T COG4981 112 RLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFP---YVAFKPG--------------------TIEQIRSVI 168 (717)
T ss_pred HHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCce---eEEecCC--------------------cHHHHHHHH
Confidence 35667776662 23 256777776665433222322 2334443 568899999
Q ss_pred HHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~ 308 (471)
+.++++| ...++ +|.--|..- --..|.+.-..+...+.++|+.. + =+|-+|||+|.+
T Consensus 169 ~IAka~P-~~pIi-lq~egGraG-GHHSweDld~llL~tYs~lR~~~-N-Ivl~vGgGiGtp 225 (717)
T COG4981 169 RIAKANP-TFPII-LQWEGGRAG-GHHSWEDLDDLLLATYSELRSRD-N-IVLCVGGGIGTP 225 (717)
T ss_pred HHHhcCC-CCceE-EEEecCccC-CccchhhcccHHHHHHHHHhcCC-C-EEEEecCCcCCh
Confidence 9999988 55443 454333221 11123333344567778887641 1 267899999974
No 202
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=32.11 E-value=5.1e+02 Score=25.60 Aligned_cols=50 Identities=18% Similarity=0.128 Sum_probs=30.6
Q ss_pred HHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEE--eCCCCcHHHHHHHHhCCCE
Q 012098 132 ILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIF--NGNGKLLEDLVLAAQEGVF 185 (471)
Q Consensus 132 vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~--~g~~k~~~~l~~a~~~gv~ 185 (471)
+++.+.+. ++ .+|......++.|+++|.+ |+- +|- .+++.++.+.++|+.
T Consensus 81 vI~~l~~~~~~~ISIDT~~~~va~~AL~~Gad---iINDI~g~-~d~~~~~~~a~~~~~ 135 (282)
T PRK11613 81 VVEAIAQRFEVWISVDTSKPEVIRESAKAGAH---IINDIRSL-SEPGALEAAAETGLP 135 (282)
T ss_pred HHHHHHhcCCCeEEEECCCHHHHHHHHHcCCC---EEEECCCC-CCHHHHHHHHHcCCC
Confidence 44555532 43 6777788888888888863 431 232 344556667777753
No 203
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.08 E-value=5.5e+02 Score=25.96 Aligned_cols=86 Identities=21% Similarity=0.043 Sum_probs=50.0
Q ss_pred cHHHHHHHHhCCCE-E----EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH
Q 012098 172 LLEDLVLAAQEGVF-V----NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246 (471)
Q Consensus 172 ~~~~l~~a~~~gv~-i----~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l 246 (471)
+.++++.|.+.|+. + .....+.++...+.+++.|..+.+.+ . ++ +..+++++.+.+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l----~--------------~s-~~~~~e~l~~~a 149 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFL----M--------------MS-HMTPPEKLAEQA 149 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEE----E--------------cc-cCCCHHHHHHHH
Confidence 56889999998862 2 23444555566666777665332222 1 11 346788888888
Q ss_pred HHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHH
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAV 280 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~ 280 (471)
+.+.+. +...+.+.=..|. ..++...+.+.
T Consensus 150 ~~~~~~--Ga~~i~i~DT~G~--~~P~~v~~~v~ 179 (333)
T TIGR03217 150 KLMESY--GADCVYIVDSAGA--MLPDDVRDRVR 179 (333)
T ss_pred HHHHhc--CCCEEEEccCCCC--CCHHHHHHHHH
Confidence 888776 4555555434443 34554444333
No 204
>PRK08611 pyruvate oxidase; Provisional
Probab=32.03 E-value=3e+02 Score=30.07 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------HHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------LEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|-.--+..|+..+.+.|.+.--|++++.+.. .+..+.|...|+. ..|++.+||+...
T Consensus 434 GDGsf~m~~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al 513 (576)
T PRK08611 434 GDGGFSMVMQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRVEKAEELDPAF 513 (576)
T ss_pred cccHHhhhHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHH
Confidence 444444578999999999997666677664322 1223344456775 7899999998887
Q ss_pred HHHHHcCCceEEEEEEec
Q 012098 199 VASRIAGKKVNVLLRINP 216 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin~ 216 (471)
+.+.+.+.+.-|-|++++
T Consensus 514 ~~a~~~~~p~lIeV~vd~ 531 (576)
T PRK08611 514 EEALAQDKPVIIDVYVDP 531 (576)
T ss_pred HHHHhCCCCEEEEEEeCC
Confidence 776665554444555543
No 205
>PRK09989 hypothetical protein; Provisional
Probab=31.98 E-value=2.5e+02 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=13.3
Q ss_pred HHHHHHH---HHhcCCcEEEEcc
Q 012098 322 LIDTVRE---LVLSRNLNLIIEP 341 (471)
Q Consensus 322 ~~~~i~~---~~~~~~~~l~~Ep 341 (471)
+.+.+++ ...+.|+++.+||
T Consensus 122 ~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 122 FIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe
Confidence 4444444 3456889999998
No 206
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=31.84 E-value=2.9e+02 Score=25.81 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=40.6
Q ss_pred HHHHHHHHcCC-ceEEcCHHHHHHHHHC-----------CCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCH------
Q 012098 131 KILEHLRKLGC-GAVLVSGNELRLALRA-----------GFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE------ 191 (471)
Q Consensus 131 ~vl~~l~~~G~-g~~vaS~~El~~a~~~-----------G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~------ 191 (471)
.+++.+.+.|. .+++.+...++.+++. +++...++ .|+ +.++++.+++.|.. +.++..
T Consensus 31 ~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~-ig~--~~~~~~~a~~aGad~I~~~~~~~~~p~ 107 (219)
T cd04729 31 AMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVY-ITP--TIEEVDALAAAGADIIALDATDRPRPD 107 (219)
T ss_pred HHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCce-eCC--CHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 45555556665 5556777667666653 11111111 132 34577888888863 444311
Q ss_pred -HHHHHHHHHHHHcCCceEEEE
Q 012098 192 -FDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 192 -~el~~l~~~a~~~g~~~~V~l 212 (471)
++++.+.+.+++.+ .+.+.+
T Consensus 108 ~~~~~~~i~~~~~~g-~~~iiv 128 (219)
T cd04729 108 GETLAELIKRIHEEY-NCLLMA 128 (219)
T ss_pred CcCHHHHHHHHHHHh-CCeEEE
Confidence 25566666666655 344443
No 207
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=31.81 E-value=4.8e+02 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
++++++.+++..+++.-..-..+++|+|--..
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~G 212 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTG 212 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCC
Confidence 36788999999887641002457899996443
No 208
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=31.65 E-value=4.7e+02 Score=25.00 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=26.6
Q ss_pred cHHHHHHHHhCCC---EEEeCCH-HHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEGV---FVNVDSE-FDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~gv---~i~vDs~-~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
+...++..++.|. .+.++.. ..+.++.+..++.|. +++|=+||+
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~--kaGlalnP~ 118 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGM--KVGLVLNPE 118 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCC--CEEEEeCCC
Confidence 3456767777774 3445532 356666666677665 567777764
No 209
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.64 E-value=4.7e+02 Score=26.75 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=27.1
Q ss_pred HcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH-HHHHHHHHHcCCCCceE
Q 012098 203 IAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWFLDAVKAHPNELKL 258 (471)
Q Consensus 203 ~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e-l~~~l~~l~~~~~~l~l 258 (471)
..|... |++|+++.... ....-|.+.+| ..++++.+.+. ++.+
T Consensus 222 ~vg~~~-igvRis~~~~~----------~~~~~G~~~~e~~~~~~~~L~~~--giD~ 265 (362)
T PRK10605 222 EWGADR-IGIRISPLGTF----------NNVDNGPNEEADALYLIEQLGKR--GIAY 265 (362)
T ss_pred HcCCCe-EEEEECCcccc----------ccCCCCCCHHHHHHHHHHHHHHc--CCCE
Confidence 345554 99999864210 01234788888 68888888765 4544
No 210
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=31.57 E-value=1.7e+02 Score=27.15 Aligned_cols=70 Identities=16% Similarity=0.050 Sum_probs=42.3
Q ss_pred cHHHHHHHHHcCC--ceEEcCHHHHHHHHHCCCCCCcEE--EeCC---C--C--cHHHHHHHHhCCCEE----EeCCHHH
Q 012098 129 NYKILEHLRKLGC--GAVLVSGNELRLALRAGFDPTKCI--FNGN---G--K--LLEDLVLAAQEGVFV----NVDSEFD 193 (471)
Q Consensus 129 ~~~vl~~l~~~G~--g~~vaS~~El~~a~~~G~~~~~Ii--~~g~---~--k--~~~~l~~a~~~gv~i----~vDs~~e 193 (471)
...+++.+++.+. =.||+|.+|...|.++|++ -|- ++|. . . +-+.++.+.+.++.+ .+.+.++
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D--~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~ 158 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAELGFD--IIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQ 158 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-S--EEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHH
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCC--EEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHH
Confidence 4577788888775 3699999999999999984 221 2221 1 1 223455556667654 3678888
Q ss_pred HHHHHHH
Q 012098 194 LENIVVA 200 (471)
Q Consensus 194 l~~l~~~ 200 (471)
+.+..++
T Consensus 159 a~~al~~ 165 (192)
T PF04131_consen 159 AAKALEL 165 (192)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7766553
No 211
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=31.41 E-value=3.6e+02 Score=25.29 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCcEEEeCCC----------------CcHHHHHHHHhCCCEEEeC-------CHHHHHHHHHHHHHcCCc
Q 012098 151 LRLALRAGFDPTKCIFNGNG----------------KLLEDLVLAAQEGVFVNVD-------SEFDLENIVVASRIAGKK 207 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~----------------k~~~~l~~a~~~gv~i~vD-------s~~el~~l~~~a~~~g~~ 207 (471)
++.+...|++--++.+...- +-.+.++.+.+.|..+.+. +.+++..+.+.+.+.|..
T Consensus 73 ~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (237)
T PF00682_consen 73 VEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD 152 (237)
T ss_dssp HHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S
T ss_pred HHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe
Q ss_pred eEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 208 VNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 208 ~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
. |.+. .+=--++|+++.++++.+++.- .-...|+|+|
T Consensus 153 ~---i~l~----------------Dt~G~~~P~~v~~lv~~~~~~~-~~~~l~~H~H 189 (237)
T PF00682_consen 153 I---IYLA----------------DTVGIMTPEDVAELVRALREAL-PDIPLGFHAH 189 (237)
T ss_dssp E---EEEE----------------ETTS-S-HHHHHHHHHHHHHHS-TTSEEEEEEB
T ss_pred E---EEee----------------CccCCcCHHHHHHHHHHHHHhc-cCCeEEEEec
No 212
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=31.33 E-value=5.8e+02 Score=26.03 Aligned_cols=131 Identities=11% Similarity=0.078 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCC-ceEEcC------------HHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-E--Ee-----
Q 012098 130 YKILEHLRKLGC-GAVLVS------------GNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-V--NV----- 188 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~vaS------------~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i--~v----- 188 (471)
..+++.|.+.|+ .+|+.| ..|+..++.. ....++....+ ..++++.|++.|+. + .+
T Consensus 71 i~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~-~~~~~~~~l~~--n~~die~A~~~g~~~v~i~~s~Sd~ 147 (347)
T PLN02746 71 VELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN-LEGARFPVLTP--NLKGFEAAIAAGAKEVAVFASASES 147 (347)
T ss_pred HHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh-ccCCceeEEcC--CHHHHHHHHHcCcCEEEEEEecCHH
Confidence 578888888887 577764 1344333332 22223322222 57889999998852 2 21
Q ss_pred -----------CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCce
Q 012098 189 -----------DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK 257 (471)
Q Consensus 189 -----------Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~ 257 (471)
+.++++..+.+.+++.|..+.+.+-...+. ...++ .+++.+.++++.+.+. +..
T Consensus 148 h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----------p~~~r--~~~~~l~~~~~~~~~~--Gad 212 (347)
T PLN02746 148 FSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----------PIEGP--VPPSKVAYVAKELYDM--GCY 212 (347)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----------CccCC--CCHHHHHHHHHHHHHc--CCC
Confidence 223334456666777665443333211110 11233 4678888888888877 566
Q ss_pred EEEEEeecCCCCCCHHHHHHHHH
Q 012098 258 LVGAHCHLGSTITKVDIFRDAAV 280 (471)
Q Consensus 258 l~Glh~H~Gs~~~~~~~~~~~~~ 280 (471)
-+.|.=..| ..++....+.++
T Consensus 213 ~I~l~DT~G--~a~P~~v~~lv~ 233 (347)
T PLN02746 213 EISLGDTIG--VGTPGTVVPMLE 233 (347)
T ss_pred EEEecCCcC--CcCHHHHHHHHH
Confidence 555554454 335554444333
No 213
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.23 E-value=4.9e+02 Score=25.09 Aligned_cols=84 Identities=21% Similarity=0.048 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCE-E-EeCCH---HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHH
Q 012098 173 LEDLVLAAQEGVF-V-NVDSE---FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 247 (471)
Q Consensus 173 ~~~l~~a~~~gv~-i-~vDs~---~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~ 247 (471)
.++++.+.+.|+. + ...+. +.+....+.+++.|..+ +++... . +-.+++.+.++++
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v----~~~~~~-------------~--~~~~~~~~~~~~~ 148 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDV----VGFLMM-------------S--HMASPEELAEQAK 148 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeE----EEEEEe-------------c--cCCCHHHHHHHHH
Confidence 5789999998863 2 23344 44555556666666533 333210 1 2257788888888
Q ss_pred HHHcCCCCceEEEEEeecCCCCCCHHHHHHHH
Q 012098 248 AVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 279 (471)
Q Consensus 248 ~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~ 279 (471)
.+.+. +...+.+-=..| ...++.+.+.+
T Consensus 149 ~~~~~--G~d~i~l~DT~G--~~~P~~v~~lv 176 (263)
T cd07943 149 LMESY--GADCVYVTDSAG--AMLPDDVRERV 176 (263)
T ss_pred HHHHc--CCCEEEEcCCCC--CcCHHHHHHHH
Confidence 88876 455555443344 33455444433
No 214
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=31.22 E-value=3.8e+02 Score=27.01 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=73.0
Q ss_pred EEeHHH-HHHHHHHHHHHhcCCCc-eEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcE-EEeCCCCc
Q 012098 96 LYSKPQ-ITRNVEAYKQALEGLNS-IIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKC-IFNGNGKL 172 (471)
Q Consensus 96 v~d~~~-l~~n~~~~~~a~~~~~~-~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~I-i~~g~~k~ 172 (471)
.+|++. +.+|++++.+++...-. -....+.=-.+..+++.+++.|+.+-.-+-+++..++.+.++...| +|.|-+-.
T Consensus 132 aidl~~~~~~Nl~~~A~a~~k~~~dltV~vLdRpRH~~lI~eir~~Gari~Li~DGDV~~ai~~~~~~~~vD~~~GiGGa 211 (322)
T PRK12415 132 KISLDDPIEKTIEIVAEANNKKIRDLTVIVQERERHQDIIDRVRAKGARVKLFGDGDVGASIATALPGTGIDLFVGIGGA 211 (322)
T ss_pred eecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCC
Confidence 355543 78999999988765211 2345556566889999999999999999999998888877765544 56677666
Q ss_pred HHHHHHHH--hC-C--C--EEEeCCHHHHHHHHH
Q 012098 173 LEDLVLAA--QE-G--V--FVNVDSEFDLENIVV 199 (471)
Q Consensus 173 ~~~l~~a~--~~-g--v--~i~vDs~~el~~l~~ 199 (471)
+|-.-.|. +. | + ++...+.+|.++..+
T Consensus 212 PEGVlaAaAlkclGG~~q~rL~~~~~~e~~r~~~ 245 (322)
T PRK12415 212 PEGVISAAALKCLGGEMQARLVPMNEEEEARCRE 245 (322)
T ss_pred hHHHHHHHHHHhCCceeEEEECCCCHHHHHHHHH
Confidence 66554443 32 3 2 477888888777554
No 215
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=31.21 E-value=4.9e+02 Score=25.14 Aligned_cols=38 Identities=11% Similarity=0.032 Sum_probs=23.5
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHH
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDA 278 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~ 278 (471)
.+++.+.++++.+.+. +..-+.+.=..|. ..++...+.
T Consensus 140 ~~~~~~~~~~~~~~~~--G~~~i~l~DT~G~--~~P~~v~~l 177 (268)
T cd07940 140 TDLDFLIEVVEAAIEA--GATTINIPDTVGY--LTPEEFGEL 177 (268)
T ss_pred CCHHHHHHHHHHHHHc--CCCEEEECCCCCC--CCHHHHHHH
Confidence 5778888888888776 4555555444553 345544443
No 216
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=31.11 E-value=4e+02 Score=26.73 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=72.6
Q ss_pred EEeHHH-HHHHHHHHHHHhcCCCc-eEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcE-EEeCCCCc
Q 012098 96 LYSKPQ-ITRNVEAYKQALEGLNS-IIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKC-IFNGNGKL 172 (471)
Q Consensus 96 v~d~~~-l~~n~~~~~~a~~~~~~-~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~I-i~~g~~k~ 172 (471)
++|++. +.+|++++.+++...-. -....+.=-.+..+++.+++.|+.+-.-+-+++..++.+.++...| +|.|-+-.
T Consensus 134 ~vdl~~p~~eNl~~~A~algk~v~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGa 213 (319)
T PRK09479 134 VVDLDAPVAENLRAVAKALGKDVSDLTVVVLDRPRHEELIAEIREAGARVKLISDGDVAGAIATAFPDTGVDILMGIGGA 213 (319)
T ss_pred eecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCCCCeeEEEEcCcC
Confidence 455544 78999999988764211 2344555566889999999999999999999999999887765444 56676666
Q ss_pred HHHHHHHH--hC-C--C--EEEeCCHHHHHHHHH
Q 012098 173 LEDLVLAA--QE-G--V--FVNVDSEFDLENIVV 199 (471)
Q Consensus 173 ~~~l~~a~--~~-g--v--~i~vDs~~el~~l~~ 199 (471)
+|-.-.|. +. | + ++...+.+|.++..+
T Consensus 214 PEGVlaAaAlkclGG~mqgRL~~~~~~e~~r~~~ 247 (319)
T PRK09479 214 PEGVLAAAALKCLGGEMQGRLLPRNEEERARAKK 247 (319)
T ss_pred hHHHHHHHHHHhcCceeEEeECCCCHHHHHHHHH
Confidence 66544443 32 3 2 467788888777554
No 217
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=30.81 E-value=1.9e+02 Score=31.27 Aligned_cols=78 Identities=23% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC--------------------cHHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK--------------------LLEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k--------------------~~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|-.-.+..|+..+.+.+.+.--|++++.+. ..+..+.|...|+. ..|++.+||+...
T Consensus 442 GDGsf~m~~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~v~~~~el~~al 521 (554)
T TIGR03254 442 GDSAFGFSGMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYNVTTPDELKAAL 521 (554)
T ss_pred cCchhcccHHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHH
Confidence 55555667899999999999876667765431 11223344456875 7899999998877
Q ss_pred HHHHHcCCceEEEEEEecC
Q 012098 199 VASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin~~ 217 (471)
+.+...+.+.-|=+++++.
T Consensus 522 ~~a~~~~~p~lIev~id~~ 540 (554)
T TIGR03254 522 NEALASGKPTLINAVIDPS 540 (554)
T ss_pred HHHHhCCCCEEEEEEECCC
Confidence 6665545544444555543
No 218
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=30.68 E-value=6.4e+02 Score=28.39 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.3
Q ss_pred cHHHHHHHHHcCC--ceEEcCHHHHHHHHHCCC
Q 012098 129 NYKILEHLRKLGC--GAVLVSGNELRLALRAGF 159 (471)
Q Consensus 129 ~~~vl~~l~~~G~--g~~vaS~~El~~a~~~G~ 159 (471)
...+++...+.|. =+||-+..|++.|+++|.
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga 181 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAIAAGA 181 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC
Confidence 4566677777786 368999999999998764
No 219
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=30.57 E-value=2.4e+02 Score=28.62 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.2
Q ss_pred EeCCHHHHHHHHHHHHHcCCceEEEE
Q 012098 187 NVDSEFDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 187 ~vDs~~el~~l~~~a~~~g~~~~V~l 212 (471)
|+.+.+.++.+.+.|++.+.+++|++
T Consensus 103 Nig~~e~v~~vv~~ak~~~ipIRIGV 128 (346)
T TIGR00612 103 NIGFRERVRDVVEKARDHGKAMRIGV 128 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEec
Confidence 68888999999999999887766553
No 220
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.74 E-value=6e+02 Score=25.70 Aligned_cols=110 Identities=18% Similarity=0.068 Sum_probs=58.6
Q ss_pred CHHHHHHHHHCCCCCCcEE-EeCCC-CcHHHHHHHHhCCCE-----EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCC
Q 012098 147 SGNELRLALRAGFDPTKCI-FNGNG-KLLEDLVLAAQEGVF-----VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVD 219 (471)
Q Consensus 147 S~~El~~a~~~G~~~~~Ii-~~g~~-k~~~~l~~a~~~gv~-----i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~ 219 (471)
+..|...+.....+..++. +.-|+ -+.++++.|.+.|+. +.....+.+....+.+++.|..+.+.+-.
T Consensus 63 ~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~----- 137 (337)
T PRK08195 63 TDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMM----- 137 (337)
T ss_pred CHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEe-----
Confidence 4455444443334444553 22222 256889999998863 23344455555666677777543332211
Q ss_pred CCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHH
Q 012098 220 PQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 279 (471)
Q Consensus 220 ~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~ 279 (471)
. +..+++++.++++.+.+. +...+.+.=..|. ..++...+.+
T Consensus 138 ------------a--~~~~~e~l~~~a~~~~~~--Ga~~i~i~DT~G~--~~P~~v~~~v 179 (337)
T PRK08195 138 ------------S--HMAPPEKLAEQAKLMESY--GAQCVYVVDSAGA--LLPEDVRDRV 179 (337)
T ss_pred ------------c--cCCCHHHHHHHHHHHHhC--CCCEEEeCCCCCC--CCHHHHHHHH
Confidence 1 234778888888888776 4554444333443 3455444433
No 221
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=29.65 E-value=6.2e+02 Score=25.78 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=31.6
Q ss_pred HHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 174 EDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 174 ~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
+.|..|.+.+ |. +++.+.+.+..+.+.|++.+. .|.|.+.+
T Consensus 3 ~ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~s--PvIlq~s~ 46 (340)
T cd00453 3 KVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKA--PVIVQFSN 46 (340)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcCc
Confidence 4567777776 33 899999999999999988654 56777765
No 222
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=29.46 E-value=3.7e+02 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=18.9
Q ss_pred cEEEeCCCCcHHHHHHHHhCCCEEEeCCH
Q 012098 163 KCIFNGNGKLLEDLVLAAQEGVFVNVDSE 191 (471)
Q Consensus 163 ~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~ 191 (471)
.+.. ++.-++++++.+.+.|+..+||..
T Consensus 8 ~~~~-s~qlt~~d~~~L~~~GiktVIdlR 35 (135)
T TIGR01244 8 HLYV-SPQLTKADAAQAAQLGFKTVINNR 35 (135)
T ss_pred CeeE-cCCCCHHHHHHHHHCCCcEEEECC
Confidence 3444 444678889888889987555543
No 223
>PRK10537 voltage-gated potassium channel; Provisional
Probab=29.43 E-value=2e+02 Score=29.85 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH-h-CC-CEEEeCCHHHHHHHHHHHHHcCC
Q 012098 130 YKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-Q-EG-VFVNVDSEFDLENIVVASRIAGK 206 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~-~-~g-v~i~vDs~~el~~l~~~a~~~g~ 206 (471)
..+++.|.+.|..+.+....+.+..+..|. .++ .|...+++.|+.|- + .. +.+..++-++--.+...+++.++
T Consensus 253 ~~v~~~L~~~g~~vvVId~d~~~~~~~~g~---~vI-~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 253 INTYLGLRQRGQAVTVIVPLGLEHRLPDDA---DLI-PGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred HHHHHHHHHCCCCEEEEECchhhhhccCCC---cEE-EeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 567888888887666555445554444443 344 46556667776662 2 22 33445555554455566788888
Q ss_pred ceEEEEEEe
Q 012098 207 KVNVLLRIN 215 (471)
Q Consensus 207 ~~~V~lRin 215 (471)
..++..|++
T Consensus 329 ~~kIIa~v~ 337 (393)
T PRK10537 329 DVKTVAAVN 337 (393)
T ss_pred CCcEEEEEC
Confidence 889999987
No 224
>PLN02858 fructose-bisphosphate aldolase
Probab=29.30 E-value=5.4e+02 Score=31.56 Aligned_cols=121 Identities=24% Similarity=0.236 Sum_probs=67.8
Q ss_pred HHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC-CCCCHhHHHHHHH-HHH
Q 012098 176 LVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK-FGIRNEKLQWFLD-AVK 250 (471)
Q Consensus 176 l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK-fGi~~~el~~~l~-~l~ 250 (471)
|..|.+.+ |- +++.+++.++.+.++|++.+. .|.|.+.++ .-+ .| .+ +...+. .++
T Consensus 1106 l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~s--PvIl~~~~~--------------~~~~~~--~~-~~~~~~~~a~ 1166 (1378)
T PLN02858 1106 LLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKS--PAILQVHPG--------------ALKQGG--IP-LVSCCIAAAE 1166 (1378)
T ss_pred HHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCC--CEEEECCcc--------------HHhhcC--HH-HHHHHHHHHH
Confidence 34444555 43 899999999999999998765 567777543 112 23 22 433333 333
Q ss_pred cCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH---HHHH
Q 012098 251 AHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI---DTVR 327 (471)
Q Consensus 251 ~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~---~~i~ 327 (471)
.. .+ .+.+|. -+ ..+.+..+++++ .|++-=++| |.-+ | +++-+ ..+.
T Consensus 1167 ~~--~v-pV~lHL--DH-g~~~~~i~~ai~-----------~Gf~SVM~D-gS~l-----------~-~eeNi~~t~~vv 1216 (1378)
T PLN02858 1167 QA--SV-PITVHF--DH-GTSKHELLEALE-----------LGFDSVMVD-GSHL-----------S-FTENISYTKSIS 1216 (1378)
T ss_pred HC--CC-CEEEEC--CC-CCCHHHHHHHHH-----------hCCCEEEEe-CCCC-----------C-HHHHHHHHHHHH
Confidence 33 33 444554 32 234444333321 366544666 3322 2 23333 3344
Q ss_pred HHHhcCCcEEEEccccee
Q 012098 328 ELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 328 ~~~~~~~~~l~~EpGR~l 345 (471)
+.+..+|+.+..|.|+--
T Consensus 1217 ~~Ah~~gv~VEaElG~v~ 1234 (1378)
T PLN02858 1217 SLAHSKGLMVEAELGRLS 1234 (1378)
T ss_pred HHHHHcCCEEEEEecccC
Confidence 455678999999999875
No 225
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.30 E-value=5.9e+02 Score=28.03 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=21.4
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
++.++++.+++..+++.- + ..+|+|+|--+.
T Consensus 179 ~~~P~~~~~lv~~lk~~~-~-~pi~~H~Hnt~G 209 (592)
T PRK09282 179 LLTPYAAYELVKALKEEV-D-LPVQLHSHCTSG 209 (592)
T ss_pred CcCHHHHHHHHHHHHHhC-C-CeEEEEEcCCCC
Confidence 357788888888887642 3 356888886443
No 226
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=29.24 E-value=4.4e+02 Score=23.96 Aligned_cols=138 Identities=20% Similarity=0.111 Sum_probs=0.0
Q ss_pred EEEecccCCcHHHHHHHHHcCC-ceEEcCHHH----HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHH
Q 012098 120 IGYAIKANNNYKILEHLRKLGC-GAVLVSGNE----LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDL 194 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E----l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el 194 (471)
++..........+++.+.+.|+ .+++..... ....++..++ +-.+=.|+..+.+.++.+++.|..+.+ +-...
T Consensus 9 i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-~~~iGag~v~~~~~~~~a~~~Ga~~i~-~p~~~ 86 (190)
T cd00452 9 VLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-EALIGAGTVLTPEQADAAIAAGAQFIV-SPGLD 86 (190)
T ss_pred EEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-CCEEEEEeCCCHHHHHHHHHcCCCEEE-cCCCC
Q ss_pred HHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHH
Q 012098 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDI 274 (471)
Q Consensus 195 ~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~ 274 (471)
..+.+.++..+...-+++. +++|+.++++. +.+++++ |+
T Consensus 87 ~~~~~~~~~~~~~~i~gv~------------------------t~~e~~~A~~~------Gad~i~~-~p---------- 125 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVA------------------------TPTEIMQALEL------GADIVKL-FP---------- 125 (190)
T ss_pred HHHHHHHHHcCCcEECCcC------------------------CHHHHHHHHHC------CCCEEEE-cC----------
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 275 FRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
+-..-.++++.+++....+.++=+||
T Consensus 126 ---~~~~g~~~~~~l~~~~~~~p~~a~GG 151 (190)
T cd00452 126 ---AEAVGPAYIKALKGPFPQVRFMPTGG 151 (190)
T ss_pred ---CcccCHHHHHHHHhhCCCCeEEEeCC
No 227
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=28.95 E-value=3.1e+02 Score=22.18 Aligned_cols=82 Identities=21% Similarity=0.305 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH-h-CC-CEEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA-Q-EG-VFVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~-~-~g-v~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.|.+.+..+.+. .....+.+.+.|+ .+++ |...+.+.++.+- + .+ +.+..++.++--.+...+++.
T Consensus 11 ~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~---~~i~-gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 11 REIAEQLKEGGIDVVVIDRDPERVEELREEGV---EVIY-GDATDPEVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp HHHHHHHHHTTSEEEEEESSHHHHHHHHHTTS---EEEE-S-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCcHHHHHHHhccc---cccc-ccchhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 46788888866444433 5666788888885 3454 7667777777662 2 23 335566766666677778888
Q ss_pred CCceEEEEEEe
Q 012098 205 GKKVNVLLRIN 215 (471)
Q Consensus 205 g~~~~V~lRin 215 (471)
++..++..|++
T Consensus 87 ~~~~~ii~~~~ 97 (116)
T PF02254_consen 87 NPDIRIIARVN 97 (116)
T ss_dssp TTTSEEEEEES
T ss_pred CCCCeEEEEEC
Confidence 88889999986
No 228
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=27.85 E-value=3.2e+02 Score=28.60 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=40.6
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc---HHHHHHHHHcCC---ceEEcC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN---YKILEHLRKLGC---GAVLVS 147 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~---~~vl~~l~~~G~---g~~vaS 147 (471)
|||.+ ++..+|++-+..+++.++......-+.+=+||. ..-++.+.+.|+ .+-|.|
T Consensus 96 GTPsl-L~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQs 157 (416)
T COG0635 96 GTPSL-LSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQS 157 (416)
T ss_pred Ccccc-CCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEecccc
Confidence 68885 899999999999999885112124567778884 677888888886 455555
No 229
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=27.75 E-value=5.1e+02 Score=27.12 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=22.0
Q ss_pred CC-CHhHHHHHHHHHHcCCCCceEEEEEeecCCCC
Q 012098 236 GI-RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTI 269 (471)
Q Consensus 236 Gi-~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~ 269 (471)
|+ ++.++.+++..+|+.- .+ -+-+|+|.-|..
T Consensus 180 GlltP~~ayelVk~iK~~~-~~-pv~lHtH~TsG~ 212 (472)
T COG5016 180 GLLTPYEAYELVKAIKKEL-PV-PVELHTHATSGM 212 (472)
T ss_pred ccCChHHHHHHHHHHHHhc-CC-eeEEecccccch
Confidence 54 5788888999888753 43 445788876654
No 230
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=27.55 E-value=4.8e+02 Score=26.39 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=27.6
Q ss_pred cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceE
Q 012098 204 AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL 258 (471)
Q Consensus 204 ~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l 258 (471)
.|.. .|++|+++... . ....+|.+.++..++++.+.+. ++.+
T Consensus 216 vg~d-~v~vRis~~~~------~----~~~~~~~~~ee~~~~~~~l~~~--g~d~ 257 (338)
T cd02933 216 IGAD-RVGIRLSPFGT------F----NDMGDSDPEATFSYLAKELNKR--GLAY 257 (338)
T ss_pred hCCC-ceEEEECcccc------C----CCCCCCCCHHHHHHHHHHHHHc--CCcE
Confidence 4554 49999986521 0 1123578889988888888776 4554
No 231
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.13 E-value=2e+02 Score=30.58 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
+.++++.+++..+++.. ++ .+++|+|--..
T Consensus 189 l~P~~v~~Lv~alk~~~-~~-pi~~H~Hnt~G 218 (468)
T PRK12581 189 LTPKAAKELVSGIKAMT-NL-PLIVHTHATSG 218 (468)
T ss_pred cCHHHHHHHHHHHHhcc-CC-eEEEEeCCCCc
Confidence 46889999999988764 44 46888886443
No 232
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=27.08 E-value=2.2e+02 Score=31.14 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=44.1
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-------------------------------HHHHHHHHhCCCE-EE
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-------------------------------LEDLVLAAQEGVF-VN 187 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-------------------------------~~~l~~a~~~gv~-i~ 187 (471)
|.|---.+..|+..+.+.+++.--|++|+.+.. .+..+.|...|+. ..
T Consensus 444 GDG~f~m~~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~ 523 (588)
T TIGR01504 444 GDYDFQFMIEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIR 523 (588)
T ss_pred cchHhhccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCCEEEE
Confidence 444445578999999999998776777765331 1223344456875 78
Q ss_pred eCCHHHHHHHHHHHHH
Q 012098 188 VDSEFDLENIVVASRI 203 (471)
Q Consensus 188 vDs~~el~~l~~~a~~ 203 (471)
|++.+||+...+.+.+
T Consensus 524 V~~~~eL~~al~~a~~ 539 (588)
T TIGR01504 524 VFKPEEIAPAFEQAKA 539 (588)
T ss_pred ECCHHHHHHHHHHHHh
Confidence 9999999887776653
No 233
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=27.03 E-value=6.9e+02 Score=25.52 Aligned_cols=136 Identities=20% Similarity=0.167 Sum_probs=74.7
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
..+.|..|.+.+ |- +++.+++.+..+.++|++.+. .|.|.+.++ ..+| ...+.+..++..
T Consensus 6 ~k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~s--PvIlq~s~~--------------~~~~-~g~~~~~~~v~~ 68 (347)
T PRK13399 6 LRQLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDS--PVILQASRG--------------ARKY-AGDAMLRHMVLA 68 (347)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEECCcc--------------hhhh-CCHHHHHHHHHH
Confidence 345677777765 43 899999999999999998765 567777643 1122 223445555555
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~ 328 (471)
+.+.. .--.+.||.--| .+.+..++++ +.|++-=++| |.-++ + +.... ++++=++..++
T Consensus 69 ~ae~~-~~VPVaLHLDHg---~~~e~i~~Ai-----------~~GFtSVMiD-gS~l~-~---~~~~~-~~eeNI~~Tre 127 (347)
T PRK13399 69 AAEMY-PDIPICLHQDHG---NSPATCQSAI-----------RSGFTSVMMD-GSLLA-D---GKTPA-SYDYNVDVTRR 127 (347)
T ss_pred HHHhc-CCCcEEEECCCC---CCHHHHHHHH-----------hcCCCEEEEe-CCCCC-C---CCCcc-CHHHHHHHHHH
Confidence 44321 112455554332 3444332222 2466555666 43332 0 00011 23443333333
Q ss_pred ---HHhcCCcEEEEccccee
Q 012098 329 ---LVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 329 ---~~~~~~~~l~~EpGR~l 345 (471)
.....|+.+-.|.|+--
T Consensus 128 vve~Ah~~GvsVEaELG~ig 147 (347)
T PRK13399 128 VTEMAHAVGVSVEGELGCLG 147 (347)
T ss_pred HHHHHHHcCCeEEEEeeecc
Confidence 44568999999999753
No 234
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.01 E-value=7.8e+02 Score=26.09 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCcEEEeCCCCcH--HHHHHHHhCCCEEE---------eCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 148 GNELRLALRAGFDPTKCIFNGNGKLL--EDLVLAAQEGVFVN---------VDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~~k~~--~~l~~a~~~gv~i~---------vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
...++.|.++|++--+|...-+-... +.++.|.+.|..+. ..+.+.+..+.+.+.+.|... |++.
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~---I~i~- 174 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS---ICIK- 174 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE---EEEc-
Q ss_pred CCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 217 DVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 217 ~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.+=--+.+.++.+++..+++.- + ..+++|+|
T Consensus 175 ---------------Dt~G~l~P~~v~~lv~alk~~~-~-~pi~~H~H 205 (448)
T PRK12331 175 ---------------DMAGILTPYVAYELVKRIKEAV-T-VPLEVHTH 205 (448)
T ss_pred ---------------CCCCCCCHHHHHHHHHHHHHhc-C-CeEEEEec
No 235
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=26.76 E-value=7.5e+02 Score=25.83 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=47.0
Q ss_pred CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccc
Q 012098 147 SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYV 226 (471)
Q Consensus 147 S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~ 226 (471)
+.+.++.+.++|+ .+|.+.-...+.+.++. +..+ .+.+++....+.+++.|.+. |.+-+-.+
T Consensus 140 t~e~l~~l~~~G~--~rvslGvQS~~~~~L~~-l~R~-----~~~~~~~~ai~~l~~~g~~~-i~~dlI~G--------- 201 (430)
T PRK08208 140 TAEKLALLAARGV--NRLSIGVQSFHDSELHA-LHRP-----QKRADVHQALEWIRAAGFPI-LNIDLIYG--------- 201 (430)
T ss_pred CHHHHHHHHHcCC--CEEEEecccCCHHHHHH-hCCC-----CCHHHHHHHHHHHHHcCCCe-EEEEeecC---------
Confidence 5666777777787 36666333333444433 3333 25556666666666655321 11111111
Q ss_pred ccCCCCCCCCCCHhHHHHHHHHHHcCC-CCceEEEEEeecCC
Q 012098 227 ATGNKNSKFGIRNEKLQWFLDAVKAHP-NELKLVGAHCHLGS 267 (471)
Q Consensus 227 ~tg~~~sKfGi~~~el~~~l~~l~~~~-~~l~l~Glh~H~Gs 267 (471)
--|-+.+++.+.++.+.+.+ .++.+.-++...|+
T Consensus 202 -------lP~qt~e~~~~~l~~~~~l~~~~is~y~L~~~~~T 236 (430)
T PRK08208 202 -------IPGQTHASWMESLDQALVYRPEELFLYPLYVRPLT 236 (430)
T ss_pred -------CCCCCHHHHHHHHHHHHhCCCCEEEEccccccCCC
Confidence 01234566777677666542 24445444444444
No 236
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=26.51 E-value=3e+02 Score=27.92 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=29.0
Q ss_pred HHHHHHHhCCC---EE---EeCCHHHHHHHHHHHHHcCCceEEEE
Q 012098 174 EDLVLAAQEGV---FV---NVDSEFDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 174 ~~l~~a~~~gv---~i---~vDs~~el~~l~~~a~~~g~~~~V~l 212 (471)
..+..+.+.|+ +| |+.+.+.+..+.+.|++.|++++|++
T Consensus 86 rla~~~~~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGV 130 (361)
T COG0821 86 RLALEAAECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGV 130 (361)
T ss_pred HHHHHhhhcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEec
Confidence 44555666664 44 68888889999999999998877664
No 237
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=26.42 E-value=2.2e+02 Score=31.06 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=49.2
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.--+..|+..+.+.+.+.--|++++.+.. .+..+.|...|+. ..+++.+|++.
T Consensus 450 GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~ 529 (571)
T PRK07710 450 GDGGFQMTLQELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRIDDELEAKE 529 (571)
T ss_pred cchHHhhhHHHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 343333568899999999998665666654311 1222344456875 78999999988
Q ss_pred HHHHHHHcCCceEEEEEEec
Q 012098 197 IVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~ 216 (471)
..+.+.+.+++.-|-|.+++
T Consensus 530 al~~a~~~~~p~lieV~vd~ 549 (571)
T PRK07710 530 QLQHAIELQEPVVIDCRVLQ 549 (571)
T ss_pred HHHHHHhCCCCEEEEEEecC
Confidence 88777665554444445543
No 238
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=26.40 E-value=3.2e+02 Score=26.46 Aligned_cols=107 Identities=22% Similarity=0.196 Sum_probs=58.7
Q ss_pred HHHHHC-CCCCCcEEEeCCC-CcHH-HHHHHHhCCCE-EEeCCHHHH--HH-HHHHHHHcC-CceEEEEEEecCCCCC-C
Q 012098 152 RLALRA-GFDPTKCIFNGNG-KLLE-DLVLAAQEGVF-VNVDSEFDL--EN-IVVASRIAG-KKVNVLLRINPDVDPQ-V 222 (471)
Q Consensus 152 ~~a~~~-G~~~~~Ii~~g~~-k~~~-~l~~a~~~gv~-i~vDs~~el--~~-l~~~a~~~g-~~~~V~lRin~~~~~~-~ 222 (471)
..+.+. .++++++++.|.. .... +.+.+-+.|+. +..+...+. +. +.++.+..+ ..-.|.|=++.+.-.. .
T Consensus 136 ~~~~~~~~~~~~~~v~iG~r~~~~~~e~~~~~~~~i~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~vylsiDiDvlDp~~ 215 (277)
T PF00491_consen 136 RRALEEPLLDPENVVQIGIRSFDNESEYEYLKELGIKIFSADEIREDGIDAVLEEILEALGSGTDPVYLSIDIDVLDPAF 215 (277)
T ss_dssp HHHHHTTSSEGGGEEEEEE-STTHHHHHHHHHHTTSEEEEHHHHHHHHHHHHHHHHHHHHTTSTSEEEEEEEGGGBBTTT
T ss_pred hhhcccCCcCcCcEEEEecccccchHHHHHHHHcCCEEEehhHhhhhhhhhHHHHHHHHHhcCCCeEEEEEehhhcChhh
Confidence 334433 4566788888842 3445 66677778886 566655542 11 223323332 1236777777543211 1
Q ss_pred CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.+ .++ .....|++.+|+.++++.+... -+++|+..-
T Consensus 216 ~p--g~~-~p~pgGl~~~e~~~~l~~l~~~---~~vvg~di~ 251 (277)
T PF00491_consen 216 AP--GVG-TPEPGGLSPRELLQLLRALARS---GKVVGLDIV 251 (277)
T ss_dssp ST--SBS-S-BSS-B-HHHHHHHHHHHHHH---SEEEEEEEE
T ss_pred CC--CcC-CCcCCCCCHHHHHHHHHHHccc---CCeEEEEEE
Confidence 11 112 2456799999999999987653 467887764
No 239
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=26.37 E-value=4.5e+02 Score=25.69 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=49.6
Q ss_pred cCCcHHHHHHHHHcCCce---E----EcCHHHHHHHHH----CCCCCCcEEEeCCCCcHHHHHHHHhCCC---E-EEeCC
Q 012098 126 ANNNYKILEHLRKLGCGA---V----LVSGNELRLALR----AGFDPTKCIFNGNGKLLEDLVLAAQEGV---F-VNVDS 190 (471)
Q Consensus 126 aN~~~~vl~~l~~~G~g~---~----vaS~~El~~a~~----~G~~~~~Ii~~g~~k~~~~l~~a~~~gv---~-i~vDs 190 (471)
.-+++.+++.+...|..+ | ..+..++...+. .|.++ ++ --|..+...+..+++.|. . ..|+|
T Consensus 25 ~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~--lV-Rvp~~~~~~i~r~LD~GA~GIivP~V~s 101 (267)
T PRK10128 25 SSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQP--VI-RPVEGSKPLIKQVLDIGAQTLLIPMVDT 101 (267)
T ss_pred cCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCe--EE-ECCCCCHHHHHHHhCCCCCeeEecCcCC
Confidence 456788999999888532 2 225555553332 45533 32 234457788999998763 3 58999
Q ss_pred HHHHHHHHHHHH
Q 012098 191 EFDLENIVVASR 202 (471)
Q Consensus 191 ~~el~~l~~~a~ 202 (471)
.+|++.+.+.++
T Consensus 102 aeeA~~~V~a~r 113 (267)
T PRK10128 102 AEQARQVVSATR 113 (267)
T ss_pred HHHHHHHHHhcC
Confidence 999999998765
No 240
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=26.23 E-value=5.5e+02 Score=24.11 Aligned_cols=89 Identities=7% Similarity=-0.021 Sum_probs=55.3
Q ss_pred CCcEEEE--eHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEc---CHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLY--SKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLV---SGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~--d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~va---S~~El~~a~~~G~~~~~Ii 165 (471)
|-+++.+ +-+.-.+.++++++.++... .+.--.=+--+.+-++...++|..|-|+ +..=++.+++.|++ +
T Consensus 38 Gi~~iEit~~~~~a~~~i~~l~~~~~~~p-~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~----~ 112 (213)
T PRK06552 38 GIKAIEVTYTNPFASEVIKELVELYKDDP-EVLIGAGTVLDAVTARLAILAGAQFIVSPSFNRETAKICNLYQIP----Y 112 (213)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCC-CeEEeeeeCCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCC----E
Confidence 5566543 34444566777777664210 1333333444555678888999998887 35555566666663 3
Q ss_pred EeCCCCcHHHHHHHHhCCCE
Q 012098 166 FNGNGKLLEDLVLAAQEGVF 185 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~ 185 (471)
+-|. .+++++..|.+.|..
T Consensus 113 iPG~-~T~~E~~~A~~~Gad 131 (213)
T PRK06552 113 LPGC-MTVTEIVTALEAGSE 131 (213)
T ss_pred ECCc-CCHHHHHHHHHcCCC
Confidence 4454 688999999998863
No 241
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.78 E-value=5.7e+02 Score=26.65 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHH
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 279 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~ 279 (471)
++| |.+.++..++++.+++...++.+. .++-+|--..+.+.+.+.+
T Consensus 258 M~R-~~t~~~~~~~v~~lr~~~p~i~i~-~d~IvGfPgETeedf~~Tl 303 (420)
T PRK14339 258 MKR-GYTKEWFLNRAEKLRALVPEVSIS-TDIIVGFPGESDKDFEDTM 303 (420)
T ss_pred ccC-CCCHHHHHHHHHHHHHHCCCCEEE-EEEEEECCCCCHHHHHHHH
Confidence 566 678888888888887752145433 3555665445555555443
No 242
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=25.46 E-value=3.4e+02 Score=24.55 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=41.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-----------------HHHHHHHHhCC----CE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-----------------LEDLVLAAQEG----VF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-----------------~~~l~~a~~~g----v~-i~vDs~~el~~l 197 (471)
|.|-.--+..|+..+.+.+.+.--|++++.+.. .+....|...| +. +.+++.+|++..
T Consensus 76 GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~el~~a 155 (183)
T cd02005 76 GDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEGELDEA 155 (183)
T ss_pred CCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHHHHHHH
Confidence 554335578999999888877665666654311 12223334456 54 789999999887
Q ss_pred HHHHHH
Q 012098 198 VVASRI 203 (471)
Q Consensus 198 ~~~a~~ 203 (471)
.+.+.+
T Consensus 156 l~~a~~ 161 (183)
T cd02005 156 LKDALF 161 (183)
T ss_pred HHHHHh
Confidence 776654
No 243
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.40 E-value=2.2e+02 Score=31.00 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=53.4
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC-----------cHH----------HHHHHHhCCCE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK-----------LLE----------DLVLAAQEGVF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k-----------~~~----------~l~~a~~~gv~-i~vDs~~el~~l 197 (471)
|.|-.--+.+|+..+.+.+.+-.-|++++... ... ..+.|...|+. ..|++.+|++..
T Consensus 434 GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~~g~~v~~~~el~~a 513 (550)
T COG0028 434 GDGGFMMNGQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRVETPEELEEA 513 (550)
T ss_pred cccHHhccHHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHcCCeeEEeCCHHHHHHH
Confidence 55555567999999999888655566665311 001 34455567886 899999999998
Q ss_pred HHHHHHcCCceEEEEEEecC
Q 012098 198 VVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 198 ~~~a~~~g~~~~V~lRin~~ 217 (471)
.+.+...+.+.-|-+++++.
T Consensus 514 l~~al~~~~p~lidv~id~~ 533 (550)
T COG0028 514 LEEALASDGPVLIDVVVDPE 533 (550)
T ss_pred HHHHHhCCCCEEEEEEecCc
Confidence 88777766665555666554
No 244
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.33 E-value=2.7e+02 Score=30.38 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=51.0
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.--+..|+..+.+.|.+.--|++|+.+.. .+..+.|...|+. ..|++.+||+.
T Consensus 447 GDG~f~m~~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~~v~~~~eL~~ 526 (574)
T PRK07979 447 GDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPDELES 526 (574)
T ss_pred cchhhhccHHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEEEECCHHHHHH
Confidence 455556788999999999998766676654211 1223344456775 78999999988
Q ss_pred HHHHHHHc---CCceEEEEEEec
Q 012098 197 IVVASRIA---GKKVNVLLRINP 216 (471)
Q Consensus 197 l~~~a~~~---g~~~~V~lRin~ 216 (471)
..+.+.+. +++.-|-|++++
T Consensus 527 al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 527 KLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred HHHHHHhccCCCCcEEEEEEECC
Confidence 87777653 544444555543
No 245
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=24.80 E-value=2.2e+02 Score=25.63 Aligned_cols=62 Identities=26% Similarity=0.168 Sum_probs=38.0
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEeCCCC-----------------------cHHHHHHHHhCCCE-EEeCCHHHHHHHHHH
Q 012098 145 LVSGNELRLALRAGFDPTKCIFNGNGK-----------------------LLEDLVLAAQEGVF-VNVDSEFDLENIVVA 200 (471)
Q Consensus 145 vaS~~El~~a~~~G~~~~~Ii~~g~~k-----------------------~~~~l~~a~~~gv~-i~vDs~~el~~l~~~ 200 (471)
--+.+|+..+.+.+.+..-+++++.+. ..+..+.|...|+. ..|++.+|++...+.
T Consensus 81 ~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~ 160 (175)
T cd02009 81 LHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALES 160 (175)
T ss_pred HHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHH
Confidence 335678888777777655555554321 01122334446774 789999999888777
Q ss_pred HHHcCC
Q 012098 201 SRIAGK 206 (471)
Q Consensus 201 a~~~g~ 206 (471)
+.+.+.
T Consensus 161 a~~~~~ 166 (175)
T cd02009 161 ALAQDG 166 (175)
T ss_pred HHhCCC
Confidence 665433
No 246
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=24.71 E-value=2.4e+02 Score=26.74 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=30.3
Q ss_pred HhHHHHHHHHHHcCCC-C-ceEEEEEeecCCCCCC--HHHHHHHHHHHHHHHHHHHH
Q 012098 239 NEKLQWFLDAVKAHPN-E-LKLVGAHCHLGSTITK--VDIFRDAAVLMVNYIDKIRA 291 (471)
Q Consensus 239 ~~el~~~l~~l~~~~~-~-l~l~Glh~H~Gs~~~~--~~~~~~~~~~~~~~~~~l~~ 291 (471)
.+++..+++.++.... . -.=.|+|.|+|....+ .+.++..+..+.-+-+.|.+
T Consensus 91 ~~~i~~~~~~lr~~~~~~~~~scg~HVHv~~~~~~~~~~~l~~l~~~~~~~E~~l~~ 147 (252)
T PF12224_consen 91 LEEIDKVLEALRRNGAIGTNDSCGFHVHVGPEPPSFSLETLKRLAKAFWLFEPWLRR 147 (252)
T ss_pred HHHHHHHHHHHHHcCCccccCCeeEEEEECCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776431 1 1128999999876544 55555544443333334444
No 247
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=24.60 E-value=7.7e+02 Score=25.25 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=32.3
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHH-------HHHHHHHHHHHHHHHHcCCCCCEEEe
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIF-------RDAAVLMVNYIDKIRAQGFEVDYLNI 301 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~-------~~~~~~~~~~~~~l~~~g~~l~~ldi 301 (471)
..+.+.++++.++++. +- +-+=.-.||= +.+.. ...++.+.+.++.+++.+++==.+++
T Consensus 116 ~~~~~~~vv~~ake~~--ip-IRIGvN~GSL--~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSl 181 (359)
T PF04551_consen 116 IREKVKEVVEAAKERG--IP-IRIGVNSGSL--EKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISL 181 (359)
T ss_dssp -HHHHHHHHHHHHHHT---E-EEEEEEGGGS---HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEE
T ss_pred hHHHHHHHHHHHHHCC--CC-EEEecccccC--cHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 3678888999988874 32 2233345653 22222 22345566777777777775445554
No 248
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=24.28 E-value=6e+02 Score=23.82 Aligned_cols=100 Identities=17% Similarity=0.163 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCC---EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEGV---FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~gv---~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
...+...++.|. ++..+-.+....+.+..++.| .++++-++|+ -+.+++...++
T Consensus 77 eq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~G--mk~G~alkPg-------------------T~Ve~~~~~~~-- 133 (224)
T KOG3111|consen 77 EQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKG--MKVGLALKPG-------------------TPVEDLEPLAE-- 133 (224)
T ss_pred HHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcC--CeeeEEeCCC-------------------CcHHHHHHhhc--
Confidence 445566666664 455554444555666566554 5778888764 24455543332
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCC
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~ 306 (471)
.+.++.+++--...- -+ +..+.+..-++.||+.++++.+ .+-||++
T Consensus 134 -----~~D~vLvMtVePGFG--GQ---kFme~mm~KV~~lR~kyp~l~i-evDGGv~ 179 (224)
T KOG3111|consen 134 -----HVDMVLVMTVEPGFG--GQ---KFMEDMMPKVEWLREKYPNLDI-EVDGGVG 179 (224)
T ss_pred -----cccEEEEEEecCCCc--hh---hhHHHHHHHHHHHHHhCCCceE-EecCCcC
Confidence 466777777421111 11 1223344445667777776643 4456665
No 249
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=24.28 E-value=3.5e+02 Score=27.19 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 189 DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 189 Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
|+.+++..|.+.+.+.|...-.+.+..+. |+ .+.|-++.++..++++.+.+
T Consensus 248 Dn~~~l~~L~~~l~~~gv~pyyl~~~~p~-----------gg-~~~f~v~~~~~~~i~~~l~~ 298 (321)
T TIGR03821 248 DNADTLAALSERLFDAGVLPYYLHLLDKV-----------QG-AAHFDVDDERARALMAELLA 298 (321)
T ss_pred CCHHHHHHHHHHHHHcCCeeCcccccCCC-----------CC-cccccCCHHHHHHHHHHHHH
Confidence 68889999888877777654444444432 22 34577788887777776654
No 250
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.18 E-value=3e+02 Score=30.22 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=50.9
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.--+..|+..+.+.+++.--|++++.+.. .+..+.|...|+. ..|++.+||+.
T Consensus 456 GDG~f~m~~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~ 535 (595)
T PRK09107 456 GDASIQMCIQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVGIRCEKPGDLDD 535 (595)
T ss_pred cCchhhccHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 455556678999999999998766677654331 1122344456875 78999999998
Q ss_pred HHHHHHHcCCceEEEEEEe
Q 012098 197 IVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin 215 (471)
..+.+...+.+.-|-|+++
T Consensus 536 al~~a~~~~~p~lIeV~i~ 554 (595)
T PRK09107 536 AIQEMIDVDKPVIFDCRVA 554 (595)
T ss_pred HHHHHHhCCCCEEEEEEec
Confidence 8877766555444445554
No 251
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=24.16 E-value=6.2e+02 Score=23.95 Aligned_cols=126 Identities=16% Similarity=0.082 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCC-ceEEcCH------------HHH-HHHHHCCCCCCcE-EEeCCCCcHHHHHHHHhCCC---EEEeC--
Q 012098 130 YKILEHLRKLGC-GAVLVSG------------NEL-RLALRAGFDPTKC-IFNGNGKLLEDLVLAAQEGV---FVNVD-- 189 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~vaS~------------~El-~~a~~~G~~~~~I-i~~g~~k~~~~l~~a~~~gv---~i~vD-- 189 (471)
..+++.+.+.|+ .+|+.+. .|+ +.+.+.+ +..++ .+.-++ .+.++.+.+.|+ .+.++
T Consensus 22 ~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~-~~~~~~~l~~~~--~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 22 LEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV-PNVKLQALVRNR--EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred HHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc-CCcEEEEEccCc--hhhHHHHHhCCcCEEEEEEecC
Confidence 567788888887 5665533 222 2222233 22344 333232 678888888874 23332
Q ss_pred --------------CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCC
Q 012098 190 --------------SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNE 255 (471)
Q Consensus 190 --------------s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~ 255 (471)
+++.+....+.+++.|.. ++++... .++...+++++.++++.+.+. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~----v~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~--g 159 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLE----VEGSLED-------------AFGCKTDPEYVLEVAKALEEA--G 159 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEEEe-------------ecCCCCCHHHHHHHHHHHHHc--C
Confidence 245555555566666543 3333210 111137888999999988887 4
Q ss_pred ceEEEEEeecCCCCCCHHHHHHHH
Q 012098 256 LKLVGAHCHLGSTITKVDIFRDAA 279 (471)
Q Consensus 256 l~l~Glh~H~Gs~~~~~~~~~~~~ 279 (471)
...+.+.=..|. ..++.+.+.+
T Consensus 160 ~~~i~l~Dt~G~--~~P~~v~~li 181 (265)
T cd03174 160 ADEISLKDTVGL--ATPEEVAELV 181 (265)
T ss_pred CCEEEechhcCC--cCHHHHHHHH
Confidence 555555544553 3455444443
No 252
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=24.04 E-value=4.2e+02 Score=26.12 Aligned_cols=87 Identities=18% Similarity=0.095 Sum_probs=49.5
Q ss_pred eEEEecccCCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCC-CCcHHHHHHHHhCCCEE-----EeCCH
Q 012098 119 IIGYAIKANNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGN-GKLLEDLVLAAQEGVFV-----NVDSE 191 (471)
Q Consensus 119 ~i~yavKaN~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~-~k~~~~l~~a~~~gv~i-----~vDs~ 191 (471)
.+...+-.|+. -++.+. +.|+--...|..|+. +.. +.+-++...| ..-.+....|++.|..+ ...++
T Consensus 31 ~~vav~d~~~~--~a~~~a~~~~~~~~~~~~~~ll---~~~-~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~ 104 (342)
T COG0673 31 ELVAVVDRDPE--RAEAFAEEFGIAKAYTDLEELL---ADP-DIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTL 104 (342)
T ss_pred EEEEEecCCHH--HHHHHHHHcCCCcccCCHHHHh---cCC-CCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCH
Confidence 44444444443 344333 345442334555554 332 1233444444 33445667788999754 45789
Q ss_pred HHHHHHHHHHHHcCCceEEE
Q 012098 192 FDLENIVVASRIAGKKVNVL 211 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~~V~ 211 (471)
+|++.|.+++++.|.++.|+
T Consensus 105 ~ea~~l~~~a~~~~~~l~v~ 124 (342)
T COG0673 105 EEAEELVELARKAGVKLMVG 124 (342)
T ss_pred HHHHHHHHHHHHcCCceeee
Confidence 99999999999876655443
No 253
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.98 E-value=4.6e+02 Score=23.16 Aligned_cols=76 Identities=13% Similarity=-0.048 Sum_probs=39.2
Q ss_pred HHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHH--------H-HHHHHCCCCCCcEEEeCCCCcHHHHH
Q 012098 108 AYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNE--------L-RLALRAGFDPTKCIFNGNGKLLEDLV 177 (471)
Q Consensus 108 ~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~E--------l-~~a~~~G~~~~~Ii~~g~~k~~~~l~ 177 (471)
-+.++|...++.+.|.==--+-.++++...+... .+-++|... + +.+++.|.+. .+++.|..++++++.
T Consensus 31 via~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~-i~v~~GGvip~~d~~ 109 (143)
T COG2185 31 VIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVED-ILVVVGGVIPPGDYQ 109 (143)
T ss_pred HHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcc-eEEeecCccCchhHH
Confidence 3445555555555554333333456666556554 333343221 1 2233467642 223666667777777
Q ss_pred HHHhCCC
Q 012098 178 LAAQEGV 184 (471)
Q Consensus 178 ~a~~~gv 184 (471)
...++|+
T Consensus 110 ~l~~~G~ 116 (143)
T COG2185 110 ELKEMGV 116 (143)
T ss_pred HHHHhCc
Confidence 7777775
No 254
>PLN02470 acetolactate synthase
Probab=23.87 E-value=2.8e+02 Score=30.27 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=50.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-----------------------------HHHHHHHHhCCCE-EEeC
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-----------------------------LEDLVLAAQEGVF-VNVD 189 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-----------------------------~~~l~~a~~~gv~-i~vD 189 (471)
|.|----+..|+..+.+.+.+.--|++|+.+.. .+....|...|+. ..|+
T Consensus 452 GDG~f~m~~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~ 531 (585)
T PLN02470 452 GDGSFIMNIQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT 531 (585)
T ss_pred ccchhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCCeEEEEC
Confidence 444445578999999999987665666654321 1223344456875 7899
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 190 SEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 190 s~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
+.+|++...+.+.+.+++.-|-|.+++
T Consensus 532 ~~~el~~al~~a~~~~~p~lieV~i~~ 558 (585)
T PLN02470 532 RKSDLREAIQKMLDTPGPYLLDVIVPH 558 (585)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 999998887777665554444455543
No 255
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=23.81 E-value=5.4e+02 Score=23.12 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCC----EEEecCCCCcCCCCCCCCC
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVD----YLNIGGGLGIDYYHTGAVL 316 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~----~ldiGGGl~i~y~~~~~~~ 316 (471)
.+..++++++. .++++++..|.|-...+...+.+ ++-+.|++.|.++- .|+ |++=++.-.-.+.
T Consensus 40 tA~k~lemveg---~lkvVvVthh~Gf~e~g~~e~~~------E~~~~L~erGa~v~~~sHalS-g~eRsis~kfGG~-- 107 (186)
T COG1751 40 TALKALEMVEG---DLKVVVVTHHAGFEEKGTQEMDE------EVRKELKERGAKVLTQSHALS-GVERSISRKFGGY-- 107 (186)
T ss_pred HHHHHHHhccc---CceEEEEEeecccccCCceecCH------HHHHHHHHcCceeeeehhhhh-cchhhhhhhcCCc--
Confidence 44555666543 58999999999855444332222 23345666666432 222 3333332111111
Q ss_pred CCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEE--EEEEEE
Q 012098 317 PKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLV--NHVTGV 359 (471)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lv--t~V~~v 359 (471)
...+-+++++| .+ ..|+++++|.- .+.+++|.+- ..|+.+
T Consensus 108 ~p~eiiAetLR-~f-g~G~KVcvEIt-iMAaDaGlIp~~eeViAi 149 (186)
T COG1751 108 SPLEIIAETLR-MF-GQGVKVCVEIT-IMAADAGLIPVSEEVIAI 149 (186)
T ss_pred chHHHHHHHHH-Hh-cCCcEEEEEEE-EEeccCCCcccceeEEEe
Confidence 12466778888 33 56888888864 4677777664 344443
No 256
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=23.71 E-value=3.4e+02 Score=29.27 Aligned_cols=76 Identities=26% Similarity=0.281 Sum_probs=50.2
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------HHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------LEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|-.--+..|+..+.+.+.+.--|++|+.+.. .+..+.|...|+. ..|++.+||+...
T Consensus 434 GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al 513 (539)
T TIGR02418 434 GDGGFLFSSMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRVESPDQLEPTL 513 (539)
T ss_pred cchhhhchHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHH
Confidence 445455578999999999998766777764322 1223344456875 7899999998887
Q ss_pred HHHHHcCCceEEEEEEe
Q 012098 199 VASRIAGKKVNVLLRIN 215 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin 215 (471)
+.+.+.+.+.-|-++++
T Consensus 514 ~~a~~~~~p~lIev~v~ 530 (539)
T TIGR02418 514 RQAMEVEGPVVVDIPVD 530 (539)
T ss_pred HHHHhCCCCEEEEEEec
Confidence 77765555444444444
No 257
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.51 E-value=6e+02 Score=26.84 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-----ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHH
Q 012098 103 TRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-----GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLV 177 (471)
Q Consensus 103 ~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-----g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~ 177 (471)
.+.+.++.+.+.+.+........++-.+++++.+.+.|+ |+|-.|..-++.. .-|.+.+ ...+.++
T Consensus 260 ~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~~~--------~~~~~i~ 330 (472)
T TIGR03471 260 KPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLTVE--------IARRFTR 330 (472)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCCHH--------HHHHHHH
Q ss_pred HHHhCCCEEEe--------CCHHHHHHHHHHHHHcCCc
Q 012098 178 LAAQEGVFVNV--------DSEFDLENIVVASRIAGKK 207 (471)
Q Consensus 178 ~a~~~gv~i~v--------Ds~~el~~l~~~a~~~g~~ 207 (471)
.+.+.|+.+.+ ++.++++...+.+.+.+..
T Consensus 331 ~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~ 368 (472)
T TIGR03471 331 DCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPH 368 (472)
T ss_pred HHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCC
No 258
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.42 E-value=2.4e+02 Score=32.13 Aligned_cols=48 Identities=17% Similarity=0.040 Sum_probs=33.5
Q ss_pred cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 204 AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 204 ~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
.+....|++|+++.. ...-|.+.++..++++.+++. ++.+ ||+|.|..
T Consensus 615 ~~~~~~v~~ri~~~~-------------~~~~g~~~~~~~~~~~~l~~~--g~d~--i~vs~g~~ 662 (765)
T PRK08255 615 WPAEKPMSVRISAHD-------------WVEGGNTPDDAVEIARAFKAA--GADL--IDVSSGQV 662 (765)
T ss_pred cCCCCeeEEEEcccc-------------ccCCCCCHHHHHHHHHHHHhc--CCcE--EEeCCCCC
Confidence 466678999998641 223478888888888888776 5555 56676653
No 259
>TIGR01227 hutG formimidoylglutamase. Formiminoglutamase, the fourth enzyme of histidine degradation, is similar to arginases and agmatinases. It is often encoded near other enzymes of the histidine degredation pathway: histidine ammonia-lyase, urocanate hydratase, and imidazolonepropionase.
Probab=23.32 E-value=7.4e+02 Score=24.55 Aligned_cols=109 Identities=19% Similarity=0.128 Sum_probs=60.5
Q ss_pred HHHHHHHCCC-CCCcEEEeCCCC---cHHHHHHHHhCCCE-EEeCCHHH--HHHHHHHHHHc-CCceEEEEEEecCCCCC
Q 012098 150 ELRLALRAGF-DPTKCIFNGNGK---LLEDLVLAAQEGVF-VNVDSEFD--LENIVVASRIA-GKKVNVLLRINPDVDPQ 221 (471)
Q Consensus 150 El~~a~~~G~-~~~~Ii~~g~~k---~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~~a~~~-g~~~~V~lRin~~~~~~ 221 (471)
-+..++..+. .+.++++.|.-. +.++.+.+.+.|+. +..+.+.+ .+.+.+..+.. ...-.|.|=++.+.-..
T Consensus 165 ~~~~~~~~~~~~~~~~~~iGiR~~~~~~~~~~~~~~~g~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~vyvs~DiDvlDp 244 (307)
T TIGR01227 165 PFRQILDECQIEDFHYAVLGIRRFSNTQALFDYAKKLGVRYVTDDALRPGLLPTIKDILPVFLDKVDHIYLTVDMDVLDA 244 (307)
T ss_pred HHHHHhhccCCCCCcEEEEEecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHHhCCCeEEEEEEecccCh
Confidence 3555555443 345687777532 45678888888875 44444433 22233333331 11124666666443211
Q ss_pred -CCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 222 -VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 222 -~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.-+ .|| .....|++..|+.++++.+... -+++|+.+-
T Consensus 245 s~aP--gtg-~p~pgGLt~~e~~~il~~l~~~---~~vvg~Dvv 282 (307)
T TIGR01227 245 AHAP--GVS-APAPGGLYPDELLELVKRIAAS---DKVRGAEIA 282 (307)
T ss_pred hhCC--CCC-CCCCCCCCHHHHHHHHHHHhcC---CCEEEEEEE
Confidence 111 122 3677899999999999987553 367777765
No 260
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.32 E-value=1.4e+02 Score=29.32 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEecccCCcH-HHHHHHHHcC-C-----ceE------------EcCHHHHHHHHHCCCC
Q 012098 100 PQITRNVEAYKQALEGLNSIIGYAIKANNNY-KILEHLRKLG-C-----GAV------------LVSGNELRLALRAGFD 160 (471)
Q Consensus 100 ~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~-~vl~~l~~~G-~-----g~~------------vaS~~El~~a~~~G~~ 160 (471)
..+.-..++|.+++.+.+++++-.=|+-|-. .+.+..+..| . |+. ..+..|+....+...+
T Consensus 101 SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p 180 (273)
T PRK05848 101 SGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIP 180 (273)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCC
Confidence 3344445666666666567777788888853 3333333333 1 221 2355555444455555
Q ss_pred C-CcEEEeCCCCcHHHHHHHHhCCCE-EEeCCH--HHHHHHHH
Q 012098 161 P-TKCIFNGNGKLLEDLVLAAQEGVF-VNVDSE--FDLENIVV 199 (471)
Q Consensus 161 ~-~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~--~el~~l~~ 199 (471)
. ..|..- ..+.+++..|++.|+. +-+|++ ++++++.+
T Consensus 181 ~~~~I~VE--v~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~ 221 (273)
T PRK05848 181 FTAKIEIE--CESLEEAKNAMNAGADIVMCDNMSVEEIKEVVA 221 (273)
T ss_pred CCceEEEE--eCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHH
Confidence 3 334432 2477889999999873 666665 44444443
No 261
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=23.20 E-value=3.3e+02 Score=24.22 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.0
Q ss_pred HHHhCCCE-EEeCCHHHHHHHHHHHHHc
Q 012098 178 LAAQEGVF-VNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 178 ~a~~~gv~-i~vDs~~el~~l~~~a~~~ 204 (471)
.|...|+. ..+++.+|++...+.+.+.
T Consensus 141 ~a~a~G~~~~~v~~~~el~~al~~a~~~ 168 (178)
T cd02002 141 IAKAFGVEAERVETPEELDEALREALAE 168 (178)
T ss_pred HHHHcCCceEEeCCHHHHHHHHHHHHhC
Confidence 44456774 7899999998876666553
No 262
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=23.18 E-value=3.9e+02 Score=29.00 Aligned_cols=77 Identities=25% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC--c-------------------HHHHHHHHhCCCE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGK--L-------------------LEDLVLAAQEGVF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k--~-------------------~~~l~~a~~~gv~-i~vDs~~el~~l 197 (471)
|.|-.--+..|+..+.+.+.+.--|+++..+. . .+....|...|+. ..|++.+||+..
T Consensus 449 GDG~f~m~~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~a 528 (569)
T PRK09259 449 GDSAFGFSGMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVGYNVTTPDELRHA 528 (569)
T ss_pred cCccccccHHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeEEEECCHHHHHHH
Confidence 55666678899999999998876667765431 0 0112234456775 789999999887
Q ss_pred HHHHHHcCCceEEEEEEec
Q 012098 198 VVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 198 ~~~a~~~g~~~~V~lRin~ 216 (471)
.+.+...+.+.-|=+++++
T Consensus 529 l~~a~~~~~p~lIev~id~ 547 (569)
T PRK09259 529 LTEAIASGKPTLINVVIDP 547 (569)
T ss_pred HHHHHhCCCCEEEEEEECC
Confidence 7766554444334444443
No 263
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.09 E-value=8.3e+02 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCcEEE--EcccceeecccceEEEEE
Q 012098 320 RNLIDTVRELVLSRNLNLI--IEPGRSLIANTCCLVNHV 356 (471)
Q Consensus 320 ~~~~~~i~~~~~~~~~~l~--~EpGR~lva~ag~lvt~V 356 (471)
.+.++.+++.+.+.|+.+. -+-|+-+-|-||.|.+++
T Consensus 328 ~e~i~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~~~ 366 (368)
T PRK14456 328 SSTRERFRDRLLDAGLQVTVRKSYGTTINAACGQLAARC 366 (368)
T ss_pred HHHHHHHHHHHHHCCCcEEeeCCCCcchhhcCCcchhcc
Confidence 4456677888888887544 488999999999997653
No 264
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=23.05 E-value=9.7e+02 Score=25.81 Aligned_cols=85 Identities=18% Similarity=0.088 Sum_probs=55.1
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-HHHHHHHHhCCCEEEe------CCHHHHHHHHH
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNGKL-LEDLVLAAQEGVFVNV------DSEFDLENIVV 199 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-~~~l~~a~~~gv~i~v------Ds~~el~~l~~ 199 (471)
.++++.+.+. ++ .+|..+..+++.|+++|.+ |+.+-.+.. .+.+..+.++|+.+++ .+.+.++...+
T Consensus 197 ~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAd---iINsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie 273 (499)
T TIGR00284 197 KEKVKTALDALDSPVIADTPTLDELYEALKAGAS---GVIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVK 273 (499)
T ss_pred HHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCC---EEEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHH
Confidence 4667777665 43 7888999999999999863 665544333 3334445667765332 23466777777
Q ss_pred HHHHcCCceEEEEEEecCCCC
Q 012098 200 ASRIAGKKVNVLLRINPDVDP 220 (471)
Q Consensus 200 ~a~~~g~~~~V~lRin~~~~~ 220 (471)
.+.+.|.. + |-++|..++
T Consensus 274 ~a~~~Gi~-~--IIlDPglg~ 291 (499)
T TIGR00284 274 KLRTSGYS-K--VAADPSLSP 291 (499)
T ss_pred HHHHCCCC-c--EEEeCCCCc
Confidence 78887763 2 557776543
No 265
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=23.00 E-value=7.4e+02 Score=24.47 Aligned_cols=127 Identities=19% Similarity=0.162 Sum_probs=70.7
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.|..|.+.+ +. +++.+++.++.+.++|++.+. .|.|.+.++. ..-.|+ +.+..++..+
T Consensus 7 ~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~s--PvIiq~~~~~-------------~~~~g~--~~~~~~~~~~ 69 (284)
T PRK12737 7 KNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRS--PVILAGTPGT-------------FSYAGT--DYIVAIAEVA 69 (284)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCC--CEEEEcCccH-------------HhhCCH--HHHHHHHHHH
Confidence 45667777766 43 899999999999999998765 5677775431 111232 3344444433
Q ss_pred HcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---HH
Q 012098 250 KAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---TV 326 (471)
Q Consensus 250 ~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~i 326 (471)
.+.. .+ .+.||.--| .+.+...+++ +.|++-=++| |.-+ | +++=++ .+
T Consensus 70 a~~~-~V-PValHLDH~---~~~e~i~~ai-----------~~GftSVMiD-gS~l-----------p-~eeNi~~T~~v 120 (284)
T PRK12737 70 ARKY-NI-PLALHLDHH---EDLDDIKKKV-----------RAGIRSVMID-GSHL-----------S-FEENIAIVKEV 120 (284)
T ss_pred HHHC-CC-CEEEECCCC---CCHHHHHHHH-----------HcCCCeEEec-CCCC-----------C-HHHHHHHHHHH
Confidence 3221 33 445554332 2343322221 2366544555 3322 2 233233 33
Q ss_pred HHHHhcCCcEEEEccccee
Q 012098 327 RELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 327 ~~~~~~~~~~l~~EpGR~l 345 (471)
.+.+..+|+.+-.|.|+--
T Consensus 121 v~~Ah~~gvsVEaElG~ig 139 (284)
T PRK12737 121 VEFCHRYDASVEAELGRLG 139 (284)
T ss_pred HHHHHHcCCEEEEEEeecc
Confidence 4445578999999999864
No 266
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.96 E-value=3.2e+02 Score=29.63 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcH----------------------HHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLL----------------------EDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~----------------------~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.--+..||..+.+.|.+.--|++|+.+... +..+.|...|+. ..|++.+|++.
T Consensus 440 GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~t~~el~~ 519 (561)
T PRK06048 440 GDGSFQMNSQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLRVEKPSEVRP 519 (561)
T ss_pred eCchhhccHHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 4454556789999999999987666776643211 112233345775 78999999988
Q ss_pred HHHHHHHcCCceEEEEEEec
Q 012098 197 IVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~ 216 (471)
..+.+...+++.-|-+++++
T Consensus 520 al~~a~~~~~p~liev~~~~ 539 (561)
T PRK06048 520 AIEEAVASDRPVVIDFIVEC 539 (561)
T ss_pred HHHHHHhCCCCEEEEEEecC
Confidence 87777665655445555543
No 267
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=22.79 E-value=2.8e+02 Score=30.57 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=49.4
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-----------------------HHHHHHHHhCCCE-EEeCCHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-----------------------LEDLVLAAQEGVF-VNVDSEFDLE 195 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-----------------------~~~l~~a~~~gv~-i~vDs~~el~ 195 (471)
|.|-.--+..|+..+.+.+.+.-.|++++.... .+..+.|...|+. +.|++.+||+
T Consensus 460 GDG~f~m~~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~g~~V~~~~el~ 539 (616)
T PRK07418 460 GDASFLMNIQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGVKGMVISERDQLK 539 (616)
T ss_pred cchHhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCCeEEEeCCHHHHH
Confidence 445445678999999999988766677765321 1112334446775 8999999998
Q ss_pred HHHHHHHHcCCceEEEEEEe
Q 012098 196 NIVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 196 ~l~~~a~~~g~~~~V~lRin 215 (471)
...+.+.+.+++.-|-++++
T Consensus 540 ~al~~a~~~~~p~lIeV~i~ 559 (616)
T PRK07418 540 DAIAEALAHDGPVLIDVHVR 559 (616)
T ss_pred HHHHHHHhCCCCEEEEEEec
Confidence 87776665554433444444
No 268
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=22.62 E-value=1.9e+02 Score=31.02 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHH-hcCCc-EEEEcccc
Q 012098 273 DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV-LSRNL-NLIIEPGR 343 (471)
Q Consensus 273 ~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~-~~~~~-~l~~EpGR 343 (471)
+......+++....+.++..+..+..|.+|||.+....... +.++++.+++.+ ...++ ++.+|.||
T Consensus 196 ~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~-----L~~Ll~~i~~~f~~~~~~~EiTvE~gr 263 (488)
T PRK08207 196 PYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEE-----LERLLEEIYENFPDVKNVKEFTVEAGR 263 (488)
T ss_pred HHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHH-----HHHHHHHHHHhccccCCceEEEEEcCC
No 269
>PRK09389 (R)-citramalate synthase; Provisional
Probab=22.47 E-value=9.7e+02 Score=25.63 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=71.9
Q ss_pred EEeHHHHHHHHHHHHHHhcCCC-ceEEEecccCCcHHHHHHHHHcCCc-----eEEcCHHHHHHHHHCCCCCCcEEEeCC
Q 012098 96 LYSKPQITRNVEAYKQALEGLN-SIIGYAIKANNNYKILEHLRKLGCG-----AVLVSGNELRLALRAGFDPTKCIFNGN 169 (471)
Q Consensus 96 v~d~~~l~~n~~~~~~a~~~~~-~~i~yavKaN~~~~vl~~l~~~G~g-----~~vaS~~El~~a~~~G~~~~~Ii~~g~ 169 (471)
-++.++-.+-++.+.+ + ++. .++.|++-.....+.++.+.+.+.. +.-....+++.+.++|.+ .|.+..+
T Consensus 20 ~~s~e~K~~ia~~L~~-~-Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~--~v~i~~~ 95 (488)
T PRK09389 20 SLTPEEKLEIARKLDE-L-GVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVD--SVHLVVP 95 (488)
T ss_pred CcCHHHHHHHHHHHHH-c-CCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcC--EEEEEEc
Confidence 3455554444444433 1 111 2455554322334556666665532 222246778888888875 3433222
Q ss_pred CC----------cHHH--------HHHHHhCCCE--EEeC-----CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCc
Q 012098 170 GK----------LLED--------LVLAAQEGVF--VNVD-----SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHP 224 (471)
Q Consensus 170 ~k----------~~~~--------l~~a~~~gv~--i~vD-----s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~ 224 (471)
.. +.++ ++.|.+.|.. +..+ +.+.+..+.+.+.+.|... |++.
T Consensus 96 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~---i~l~--------- 163 (488)
T PRK09389 96 TSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADR---ICFC--------- 163 (488)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCE---EEEe---------
Confidence 11 1111 2334455643 3332 3444444445445555331 3332
Q ss_pred ccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 225 ~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
+|- -..+|+++.++++.+++.. .+ ..|+|+|=
T Consensus 164 --DTv-----G~~~P~~~~~lv~~l~~~~-~v-~l~~H~HN 195 (488)
T PRK09389 164 --DTV-----GILTPEKTYELFKRLSELV-KG-PVSIHCHN 195 (488)
T ss_pred --cCC-----CCcCHHHHHHHHHHHHhhc-CC-eEEEEecC
Confidence 121 1356889988888887653 43 56999995
No 270
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=22.47 E-value=3.6e+02 Score=27.92 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=64.6
Q ss_pred CcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcC-C----ceEEEEEEecCCCCCCCcccccCCCCCCCC
Q 012098 162 TKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAG-K----KVNVLLRINPDVDPQVHPYVATGNKNSKFG 236 (471)
Q Consensus 162 ~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g-~----~~~V~lRin~~~~~~~~~~~~tg~~~sKfG 236 (471)
.-|+|+... +-+.-|.. ..+=++++|.++.+.+++.- . .-+|.-|=-.+. ...+..|+. .+-|+
T Consensus 143 ~~ivytsad---sv~qiaah----e~~i~~e~ly~~c~~~R~~~~~~~~~v~RVIarpf~G~---~~~f~rt~~-r~dy~ 211 (381)
T TIGR01696 143 KLIVYTSAD---SVLQIAAH----EETFPLEELYEICEIARELTTDPKYNIGRIIARPFVGE---PGNFQRTGN-RHDYA 211 (381)
T ss_pred CceEeeccC---hheeEEec----ccccCHHHHHHHHHHHHHhcccCcceeeeEEecccccC---CCCeeeCCC-cCCCC
Confidence 458886641 22222222 23456788999999888752 1 234544432222 245666763 45788
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEE--E--eecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGA--H--CHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Gl--h--~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
+.+.+ ..+++.+++. ++.++++ - .+.|+............+.+..+++.+++....+-++|+..
T Consensus 212 ~~p~~-pTvld~l~~a--G~~V~~VGki~DiF~g~Glt~a~~~~~~~~~~~~~l~aL~~~~~~lif~nl~d 279 (381)
T TIGR01696 212 LKPFA-PTVLQKLKDE--GHDVISIGKIADIYDGEGITKKVRTTSNMDGMDATIKEMKEDFTGISFTNLVD 279 (381)
T ss_pred CCCCC-CCHHHHHHHC--CCeEEEEccHHhEecCCCcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 87731 2345555555 4555544 3 44555443211111122233344455554335566777764
No 271
>PRK08266 hypothetical protein; Provisional
Probab=22.42 E-value=3.8e+02 Score=28.82 Aligned_cols=77 Identities=25% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc---------------------HHHHHHHHhCCCE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL---------------------LEDLVLAAQEGVF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~---------------------~~~l~~a~~~gv~-i~vDs~~el~~l 197 (471)
|.|----+.+|+..+.+.+.+.--|++++.+.. .+....|...|+. ..|++.+|++..
T Consensus 428 GDG~f~~~~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~a 507 (542)
T PRK08266 428 GDGGFMFGVQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRVDSPEELRAA 507 (542)
T ss_pred cchhhhccHHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEeCCHHHHHHH
Confidence 444334468999999998887655566654321 1122344456875 789999999887
Q ss_pred HHHHHHcCCceEEEEEEec
Q 012098 198 VVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 198 ~~~a~~~g~~~~V~lRin~ 216 (471)
.+.+.+.+.+.-|-++++.
T Consensus 508 l~~a~~~~~p~liev~i~~ 526 (542)
T PRK08266 508 LEAALAHGGPVLIEVPVPR 526 (542)
T ss_pred HHHHHhCCCcEEEEEEecC
Confidence 7766554444334444443
No 272
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=22.26 E-value=8.7e+02 Score=24.98 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCcEEE-----EeHHHHHHHHHHHHHHhcC-CC--ceE-EEecccCC-----cHHHHHHHHHcCCceEEc--CHHHHHH
Q 012098 90 EKRPFYL-----YSKPQITRNVEAYKQALEG-LN--SII-GYAIKANN-----NYKILEHLRKLGCGAVLV--SGNELRL 153 (471)
Q Consensus 90 ~~tP~~v-----~d~~~l~~n~~~~~~a~~~-~~--~~i-~yavKaN~-----~~~vl~~l~~~G~g~~va--S~~El~~ 153 (471)
+.||+++ .+++.|.++.+++.+.-.. .+ .++ ..++.+-. ..+.++.+.+.|.-+..+ ..+=++.
T Consensus 95 Npt~~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgdpekfa~ave~v~~~~~pv~l~s~dpevmka 174 (467)
T COG1456 95 NPTPMFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGDPEKFAEAVEKVAEAGLPVILCSFDPEVMKA 174 (467)
T ss_pred CCCceEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCCHHHHHHHHHHHHhcCCcEEEEeCCHHHHHH
Confidence 5688875 4688899888888763211 11 122 34444432 356778888888643333 4555666
Q ss_pred HHHCCCCCCcEEEeCCCCc-HHHHHHHHhCCCEEEe---CCHHHHHHHHHHHHHcCCc
Q 012098 154 ALRAGFDPTKCIFNGNGKL-LEDLVLAAQEGVFVNV---DSEFDLENIVVASRIAGKK 207 (471)
Q Consensus 154 a~~~G~~~~~Ii~~g~~k~-~~~l~~a~~~gv~i~v---Ds~~el~~l~~~a~~~g~~ 207 (471)
+++.--+...++|...--+ .+.+++|+++++.+++ .+++++..+...+++.|.+
T Consensus 175 aLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~~dl~~lk~la~~~~~~Gi~ 232 (467)
T COG1456 175 ALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAFNDLDDLKNLAVTYAQAGIK 232 (467)
T ss_pred HHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEeccCCHHHHHHHHHHHHHcCCc
Confidence 6665334345888765222 3557788899986554 4567777777666666654
No 273
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.16 E-value=3.1e+02 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=31.4
Q ss_pred HcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEe
Q 012098 203 IAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHC 263 (471)
Q Consensus 203 ~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~ 263 (471)
..|....|++|+++... . . ...+.|.++++..++++.+.+. ++.+ ||.
T Consensus 207 ~vG~d~~v~vRis~~~~-~--~------~~~~~g~~~~e~~~~~~~l~~~--gvd~--i~v 254 (361)
T cd04747 207 AVGPDFPIILRFSQWKQ-Q--D------YTARLADTPDELEALLAPLVDA--GVDI--FHC 254 (361)
T ss_pred HcCCCCeEEEEECcccc-c--c------cccCCCCCHHHHHHHHHHHHHc--CCCE--EEe
Confidence 35777899999985311 0 0 0124578889988888888775 5666 444
No 274
>PRK15452 putative protease; Provisional
Probab=22.05 E-value=9.5e+02 Score=25.38 Aligned_cols=110 Identities=11% Similarity=0.104 Sum_probs=61.4
Q ss_pred eHHHHHHHHHHHHHHhcCCCceEEEecccCCc-------HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe--
Q 012098 98 SKPQITRNVEAYKQALEGLNSIIGYAIKANNN-------YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFN-- 167 (471)
Q Consensus 98 d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~-------~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~-- 167 (471)
+.+.+++.++..++ .+.++++++=.-+. ...++.+.+.|+ ++-|++++.+..+++...+ -.|+.+
T Consensus 44 ~~edl~eav~~ah~----~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~-l~ih~stq 118 (443)
T PRK15452 44 NHENLALGINEAHA----LGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPE-MPIHLSVQ 118 (443)
T ss_pred CHHHHHHHHHHHHH----cCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCC-CeEEEEec
Confidence 34455555444332 34566665433332 123455556776 8999999999999986422 244433
Q ss_pred CCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHc-CCceEEEE
Q 012098 168 GNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIA-GKKVNVLL 212 (471)
Q Consensus 168 g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~-g~~~~V~l 212 (471)
-+..+...++...+.|+ .+++..+=.++.|.++.+.. +..+.++|
T Consensus 119 lni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~~~~~elEvfV 165 (443)
T PRK15452 119 ANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQCPDMELEVFV 165 (443)
T ss_pred ccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhhCCCCCEEEEE
Confidence 23456677888888897 47665443344444443322 33344444
No 275
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=21.98 E-value=6.9e+02 Score=25.07 Aligned_cols=84 Identities=13% Similarity=0.170 Sum_probs=59.7
Q ss_pred EEeHHH-HHHHHHHHHHHhcCCCce-EEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcE-EEeCCCCc
Q 012098 96 LYSKPQ-ITRNVEAYKQALEGLNSI-IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKC-IFNGNGKL 172 (471)
Q Consensus 96 v~d~~~-l~~n~~~~~~a~~~~~~~-i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~I-i~~g~~k~ 172 (471)
++|++. +.+|++.+.+++...-.. ....+.=-.+..+++.+++.|+.+-.-+-+++..++...++...| +|.|.+-.
T Consensus 131 ~vdl~~p~~~Nl~~vA~algk~~~dltV~vLdRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~s~vD~~~GiGGA 210 (321)
T TIGR00330 131 TIDLNLPLADNLRNVAKALGKPLSDLTVTILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGA 210 (321)
T ss_pred eecCCCCHHHHHHHHHHHcCCChhHeEEEEEcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCC
Confidence 455543 789999999987653112 234445556889999999999999999999998888777765544 56676666
Q ss_pred HHHHHHH
Q 012098 173 LEDLVLA 179 (471)
Q Consensus 173 ~~~l~~a 179 (471)
+|-.-.|
T Consensus 211 PEGVlaA 217 (321)
T TIGR00330 211 PEGVVSA 217 (321)
T ss_pred hHHHHHH
Confidence 6654443
No 276
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.86 E-value=6.6e+02 Score=23.48 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=67.4
Q ss_pred HHHHHHHHHc-C-C--ce-EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE--EEeCCHHHHHHHHHHHH
Q 012098 130 YKILEHLRKL-G-C--GA-VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF--VNVDSEFDLENIVVASR 202 (471)
Q Consensus 130 ~~vl~~l~~~-G-~--g~-~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~--i~vDs~~el~~l~~~a~ 202 (471)
..+++.+.+. + + |+ .|-+.++++.+.++|. +.+. .|+.+++-++.+.++|+. .-+-+..|+....
T Consensus 47 ~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA---~Fiv-sP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~---- 118 (204)
T TIGR01182 47 LDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA---QFIV-SPGLTPELAKHAQDHGIPIIPGVATPSEIMLAL---- 118 (204)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC---CEEE-CCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHH----
Confidence 4555666543 2 2 43 3557899999999886 3554 566788888888888874 4577777776543
Q ss_pred HcCCceEEEEEEecCCCCCCC-------------cccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEe
Q 012098 203 IAGKKVNVLLRINPDVDPQVH-------------PYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHC 263 (471)
Q Consensus 203 ~~g~~~~V~lRin~~~~~~~~-------------~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~ 263 (471)
+.|-. .|++-|....+.- +...|| |++.+.+.+.++. +...+|+-.
T Consensus 119 ~~Ga~---~vKlFPA~~~GG~~yikal~~plp~i~~~ptG------GV~~~N~~~~l~a------Ga~~vg~Gs 177 (204)
T TIGR01182 119 ELGIT---ALKLFPAEVSGGVKMLKALAGPFPQVRFCPTG------GINLANVRDYLAA------PNVACGGGS 177 (204)
T ss_pred HCCCC---EEEECCchhcCCHHHHHHHhccCCCCcEEecC------CCCHHHHHHHHhC------CCEEEEECh
Confidence 34533 3666664322211 122344 8888888776653 455666433
No 277
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.81 E-value=8.6e+02 Score=24.78 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=62.6
Q ss_pred EeHHHHHHHHHHHHHHhcCCCceEEEecccCCc-------HHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEeC
Q 012098 97 YSKPQITRNVEAYKQALEGLNSIIGYAIKANNN-------YKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFNG 168 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~-------~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~g 168 (471)
+..+.+++-++...+ .+.+++.++-+... ...++.+.+.|. ++.++.++=+..+.+.+-+ -.++.+-
T Consensus 46 fs~~~l~e~i~~ah~----~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg~i~l~~e~~p~-l~ih~S~ 120 (347)
T COG0826 46 FSVEDLAEAVELAHS----AGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPGLIMLARERGPD-LPIHVST 120 (347)
T ss_pred CCHHHHHHHHHHHHH----cCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHHHHHHHHHhCCC-CcEEEee
Confidence 444555555544433 34456777666543 356677778897 8899999999999888732 3455433
Q ss_pred --CCCcHHHHHHHHhCCCE-EEe---CCHHHHHHHHH
Q 012098 169 --NGKLLEDLVLAAQEGVF-VNV---DSEFDLENIVV 199 (471)
Q Consensus 169 --~~k~~~~l~~a~~~gv~-i~v---Ds~~el~~l~~ 199 (471)
...+.+.++...+.|.. +++ -|++|+..|.+
T Consensus 121 q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~ 157 (347)
T COG0826 121 QANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKE 157 (347)
T ss_pred eEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHH
Confidence 34567888999999975 443 45555555544
No 278
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=5.3e+02 Score=25.96 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=62.9
Q ss_pred CcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhc--CCCceEEEecccCC--cHHHHHHHHHcCCceE---E------
Q 012098 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE--GLNSIIGYAIKANN--NYKILEHLRKLGCGAV---L------ 145 (471)
Q Consensus 79 ~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~--~~~~~i~yavKaN~--~~~vl~~l~~~G~g~~---v------ 145 (471)
|++...+.+.. .--.++.+.+.+.+-+++++++.+ ..-++++--.+-.. ...+++.+.+.|+..- .
T Consensus 101 GCP~~~V~~~g-~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~ 179 (323)
T COG0042 101 GCPSPKVVKGG-AGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG 179 (323)
T ss_pred CCChHHhcCCC-cchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc
Confidence 78877777663 234457899999999999999986 22233444443332 4568888888887322 1
Q ss_pred ----cCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhC
Q 012098 146 ----VSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE 182 (471)
Q Consensus 146 ----aS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~ 182 (471)
+....+..+++. ++.-.|+-||..++.++.+..+++
T Consensus 180 y~~~ad~~~I~~vk~~-~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 180 YLGPADWDYIKELKEA-VPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred CCCccCHHHHHHHHHh-CCCCeEEeCCCcCCHHHHHHHHHh
Confidence 123333333332 332346777777787777777764
No 279
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=21.74 E-value=5.6e+02 Score=23.06 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=43.5
Q ss_pred CCceEEcCHHHHHHHHHCCCC-CCcEEEeCCCC------------cHHHHHHHHhCCCE-EEeC-CHHHHHHHHHHHHHc
Q 012098 140 GCGAVLVSGNELRLALRAGFD-PTKCIFNGNGK------------LLEDLVLAAQEGVF-VNVD-SEFDLENIVVASRIA 204 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~-~~~Ii~~g~~k------------~~~~l~~a~~~gv~-i~vD-s~~el~~l~~~a~~~ 204 (471)
|.|----+.+|+..+.+.+.. -.-|++++.+. ..+..+.|...|+. ..++ +.++++...+.+.
T Consensus 67 GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~~el~~al~~a~-- 144 (179)
T cd03372 67 GDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKTDLEAVAKACGLDNVATVASEEAFEKAVEQAL-- 144 (179)
T ss_pred CCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCCCHHHHHHHcCCCeEEecCCHHHHHHHHHHhc--
Confidence 544333467899998888753 32334544321 12334455567874 7788 9999987776654
Q ss_pred CCceEEEEEEec
Q 012098 205 GKKVNVLLRINP 216 (471)
Q Consensus 205 g~~~~V~lRin~ 216 (471)
+.+.-|-+++++
T Consensus 145 ~gp~lIev~~~~ 156 (179)
T cd03372 145 DGPSFIHVKIKP 156 (179)
T ss_pred CCCEEEEEEEcC
Confidence 333334455543
No 280
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=21.69 E-value=6.4e+02 Score=23.27 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=44.3
Q ss_pred HHHHHHHHcCC-ceEEc--------CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEe----CCHHHHHH
Q 012098 131 KILEHLRKLGC-GAVLV--------SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV----DSEFDLEN 196 (471)
Q Consensus 131 ~vl~~l~~~G~-g~~va--------S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~v----Ds~~el~~ 196 (471)
.+++...+.|+ ++.+. +...++.+++. ++ -.|++.+...+..+++.+.+.|+. +++ -+.++++.
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~-v~-iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~ 112 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREA-VS-LPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKE 112 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHh-cC-CCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHH
Confidence 66677767776 56664 67777777664 22 135555545566678888888763 332 23356666
Q ss_pred HHHHHHHcCC
Q 012098 197 IVVASRIAGK 206 (471)
Q Consensus 197 l~~~a~~~g~ 206 (471)
+.+.+...|.
T Consensus 113 ~~~~~~~~g~ 122 (217)
T cd00331 113 LYELARELGM 122 (217)
T ss_pred HHHHHHHcCC
Confidence 6666554443
No 281
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.56 E-value=6.8e+02 Score=23.50 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEc---CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHH
Q 012098 103 TRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLV---SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA 179 (471)
Q Consensus 103 ~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~va---S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a 179 (471)
.+.++.+++.+++ ..+..-.+.+. .-++...+.|+.|-++ +.+=++.+++.|++ .+-|. .++.|+..|
T Consensus 54 ~~~I~~l~~~~p~--~~IGAGTVl~~--~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~----~iPG~-~TptEi~~a 124 (212)
T PRK05718 54 LEAIRLIAKEVPE--ALIGAGTVLNP--EQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIP----LIPGV-STPSELMLG 124 (212)
T ss_pred HHHHHHHHHHCCC--CEEEEeeccCH--HHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCC----EeCCC-CCHHHHHHH
Q ss_pred HhCCCEEE
Q 012098 180 AQEGVFVN 187 (471)
Q Consensus 180 ~~~gv~i~ 187 (471)
.+.|..++
T Consensus 125 ~~~Ga~~v 132 (212)
T PRK05718 125 MELGLRTF 132 (212)
T ss_pred HHCCCCEE
No 282
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=21.41 E-value=2.2e+02 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.355 Sum_probs=27.3
Q ss_pred HHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccc
Q 012098 288 KIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGR 343 (471)
Q Consensus 288 ~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR 343 (471)
.+++.|.++..|-+|||.+.-. . +....+.+.+++.+.-..+++...|..
T Consensus 94 ~~~~~~~~~~siy~GGGTPs~l-~-----~~L~~ll~~i~~~f~i~eis~E~~P~~ 143 (433)
T PRK08629 94 MVKELGYDFESMYVGGGTTTIL-E-----DELAKTLELAKKLFSIKEVSCESDPNH 143 (433)
T ss_pred HHHhcCCceEEEEECCCccccC-H-----HHHHHHHHHHHHhCCCceEEEEeCccc
Confidence 3344567788899999986421 1 123455555655542223344455554
No 283
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.38 E-value=1.6e+02 Score=25.50 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=33.9
Q ss_pred HHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC--CCC-HHHHHHHHHHHHhcCCcEEE
Q 012098 284 NYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV--LPK-PRNLIDTVRELVLSRNLNLI 338 (471)
Q Consensus 284 ~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~--~~~-~~~~~~~i~~~~~~~~~~l~ 338 (471)
++++.+++.+.+.-+|+.|+.-|+.|+.++.. .|. -.|++..+-+.|.+.|++++
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ 61 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVP 61 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEE
Confidence 45566777788777888884444556544321 111 15666666677778888655
No 284
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=21.08 E-value=5.3e+02 Score=22.30 Aligned_cols=58 Identities=31% Similarity=0.358 Sum_probs=37.7
Q ss_pred CHHHHHHHHHCCCCCCcEEEeCCCCcH---------------------HHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHc
Q 012098 147 SGNELRLALRAGFDPTKCIFNGNGKLL---------------------EDLVLAAQEGVF-VNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 147 S~~El~~a~~~G~~~~~Ii~~g~~k~~---------------------~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~ 204 (471)
+.+|+..+...+.+.--|++++..... +..+.+...|+. +.+++.++++...+.+.+.
T Consensus 79 ~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~~l~~a~~~a~~~ 158 (168)
T cd00568 79 TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPEDLEAALAEALAA 158 (168)
T ss_pred cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhC
Confidence 789999988888765555555532111 122334456875 7899999998887766643
No 285
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=21.08 E-value=3.4e+02 Score=29.55 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=49.6
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------HHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------LEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|-.--+.+|+..+.+.+.+..-|++|+.+.. .+..+.|...|+. ..|++.+||+...
T Consensus 434 GDGsf~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al 513 (574)
T PRK09124 434 GDGGFSMLMGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGAL 513 (574)
T ss_pred cCcHHhccHHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHH
Confidence 444444578999999999988766677664211 1222334456775 7899999999877
Q ss_pred HHHHHcCCceEEEEEEec
Q 012098 199 VASRIAGKKVNVLLRINP 216 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin~ 216 (471)
+.+.+.+.+.-|-+++++
T Consensus 514 ~~a~~~~~p~lIev~i~~ 531 (574)
T PRK09124 514 QRAFAHDGPALVDVVTAK 531 (574)
T ss_pred HHHHhCCCCEEEEEEecC
Confidence 776655544444455543
No 286
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=21.04 E-value=3.1e+02 Score=29.66 Aligned_cols=77 Identities=16% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------HHHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------LEDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------~~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|----+.+|+..+.+.+.+.--|++++.+.. .+..+.|...|+. ..|++.+||+...
T Consensus 423 GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al 502 (549)
T PRK06457 423 GDGGFTMTMMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFRLEEPKEAEEII 502 (549)
T ss_pred cccHHhhhHHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHH
Confidence 444444567899999998887666666654322 1122344456875 7899999998877
Q ss_pred HHHHHcCCceEEEEEEec
Q 012098 199 VASRIAGKKVNVLLRINP 216 (471)
Q Consensus 199 ~~a~~~g~~~~V~lRin~ 216 (471)
+.+...+.+.-|-|++++
T Consensus 503 ~~a~~~~~p~lIeV~i~~ 520 (549)
T PRK06457 503 EEFLNTKGPAVLDAIVDP 520 (549)
T ss_pred HHHHhCCCCEEEEEEeCc
Confidence 766554444444555553
No 287
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=21.02 E-value=8.4e+02 Score=24.35 Aligned_cols=88 Identities=7% Similarity=0.147 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEecCCCCcCCCCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFE---VDYLNIGGGLGIDYYHTGAVL 316 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~---l~~ldiGGGl~i~y~~~~~~~ 316 (471)
+++.+.++.+++. ++.+..-.+=+..-..+.+.+ .++++.+.+.|+. +..++--+|.+ .|. ...
T Consensus 214 ~~~~~ai~~L~~~--Gi~v~~q~vLl~gvNd~~~~l-------~~l~~~l~~~gv~pyyl~~~~p~~g~~-~f~---~~~ 280 (321)
T TIGR03822 214 AEARAACARLIDA--GIPMVSQSVLLRGVNDDPETL-------AALMRAFVECRIKPYYLHHLDLAPGTA-HFR---VTI 280 (321)
T ss_pred HHHHHHHHHHHHc--CCEEEEEeeEeCCCCCCHHHH-------HHHHHHHHhcCCeeEEEEecCCCCCcc-ccc---CcH
Confidence 5566677777766 455443332221111223222 2333344445554 33444444432 111 111
Q ss_pred CCHHHHHHHHHHHHhcCCc-EEEEc
Q 012098 317 PKPRNLIDTVRELVLSRNL-NLIIE 340 (471)
Q Consensus 317 ~~~~~~~~~i~~~~~~~~~-~l~~E 340 (471)
....++++.++..+..+.+ +++.|
T Consensus 281 ~~~~~i~~~l~~~~~g~~~p~~v~~ 305 (321)
T TIGR03822 281 EEGQALVRALRGRISGLAQPTYVLD 305 (321)
T ss_pred HHHHHHHHHHHHhCCCCcceeEEEe
Confidence 1345666666666655543 34433
No 288
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding). This family contains archaeal and bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation. The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.
Probab=20.96 E-value=4.5e+02 Score=22.16 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=25.9
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEE-EEeecCCC
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVG-AHCHLGST 268 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~G-lh~H~Gs~ 268 (471)
.+|=+++++..++.+.+++. +++++| +|+|..+.
T Consensus 49 ~~f~~d~~~~~~~~~~~~~~--g~~~vG~~HSHP~~~ 83 (128)
T cd08070 49 RRFEIDPAEQLAAQREARER--GLEVVGIYHSHPDGP 83 (128)
T ss_pred ceEEECHHHHHHHHHHHHHC--CCeEEEEEeCCCCCC
Confidence 56777888888887777765 688888 59998653
No 289
>PRK11579 putative oxidoreductase; Provisional
Probab=20.85 E-value=2.3e+02 Score=28.44 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=38.6
Q ss_pred EcCHHHHHHHHHCCCCCCcEEEeCC-CCcHHHHHHHHhCCCEEEe-----CCHHHHHHHHHHHHHcCCceEE
Q 012098 145 LVSGNELRLALRAGFDPTKCIFNGN-GKLLEDLVLAAQEGVFVNV-----DSEFDLENIVVASRIAGKKVNV 210 (471)
Q Consensus 145 vaS~~El~~a~~~G~~~~~Ii~~g~-~k~~~~l~~a~~~gv~i~v-----Ds~~el~~l~~~a~~~g~~~~V 210 (471)
..+..|+.. ...+ +-++...| ..-.+....|++.|..+.+ -+.+|++.|.+++++.|..+.+
T Consensus 53 ~~~~~ell~--~~~v--D~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v 120 (346)
T PRK11579 53 VSEPQHLFN--DPNI--DLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSV 120 (346)
T ss_pred eCCHHHHhc--CCCC--CEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 456666542 1223 33433344 3334556778889976544 5899999999999887755433
No 290
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.84 E-value=5.9e+02 Score=25.46 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=10.9
Q ss_pred EeHHHHHHHHHHHHH
Q 012098 97 YSKPQITRNVEAYKQ 111 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~ 111 (471)
+..+.|++.++.|..
T Consensus 14 ~~~~~ik~~id~ma~ 28 (326)
T cd06564 14 YSMDFLKDIIKTMSW 28 (326)
T ss_pred CCHHHHHHHHHHHHH
Confidence 467888888877753
No 291
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.84 E-value=8e+02 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 012098 193 DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST 268 (471)
Q Consensus 193 el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~ 268 (471)
-+..+.+.+++.|..+++.|.-.+... ..+-|--+.+++..+++.+. .-+++|+++-+++.
T Consensus 159 ~L~~lae~A~~~G~GV~laLEp~p~~~-----------~~~~ll~T~~~al~li~~v~----~pn~vgl~lDvgH~ 219 (382)
T TIGR02631 159 ALNLLAAYAEDQGYGLRFALEPKPNEP-----------RGDILLPTVGHALAFIETLE----RPELFGLNPETGHE 219 (382)
T ss_pred HHHHHHHHHHhhCCCcEEEEccCCCCC-----------CcceecCCHHHHHHHHHHcC----CccceeEEEechhH
Confidence 345566666665555677776543210 01223445666666666542 23467888777653
No 292
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.84 E-value=8.8e+02 Score=24.50 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCC----ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeec
Q 012098 190 SEFDLENIVVASRIAGK----KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHL 265 (471)
Q Consensus 190 s~~el~~l~~~a~~~g~----~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~ 265 (471)
+.+.+..+.+..++.-. ...|++|+.++ ++.+++.++++.+.+.+ +.||..|-
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~-------------------~~~~~~~~ia~~l~~~G----adgi~~~n 246 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVKIAPD-------------------LSDEELDDIADLALEHG----IDGVIATN 246 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEEeCCC-------------------CCHHHHHHHHHHHHHhC----CcEEEEeC
Confidence 44556666655554322 26799998743 44567777777777653 34555554
No 293
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=20.83 E-value=2.7e+02 Score=30.37 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=49.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcH--------------------HHHHHHHhCCCE-EEeCCHHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLL--------------------EDLVLAAQEGVF-VNVDSEFDLENIV 198 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~--------------------~~l~~a~~~gv~-i~vDs~~el~~l~ 198 (471)
|.|-.--+.+|+..+.+.+.+.--|++++.+... +....|...|+. ..|++.+|++...
T Consensus 434 GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v~~~~el~~al 513 (575)
T TIGR02720 434 GDGAFSMTMQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRVNKIEQLPAVF 513 (575)
T ss_pred cccHHHhhHHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 4444455789999999999987666676643321 122233445775 7899999998877
Q ss_pred HHHH--HcCCceEEEEEEecC
Q 012098 199 VASR--IAGKKVNVLLRINPD 217 (471)
Q Consensus 199 ~~a~--~~g~~~~V~lRin~~ 217 (471)
+.+. ..+.+.-|-++++++
T Consensus 514 ~~a~~~~~~~p~liev~i~~~ 534 (575)
T TIGR02720 514 EQAKAIKQGKPVLIDAKITGD 534 (575)
T ss_pred HHHHhhCCCCcEEEEEEeCCC
Confidence 6665 334444455555554
No 294
>PRK13772 formimidoylglutamase; Provisional
Probab=20.81 E-value=8.4e+02 Score=24.28 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=51.0
Q ss_pred cEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHH--HHHHHHHHHH-cCCceEEEEEEecCCC-CCCCcccccCCCCCC
Q 012098 163 KCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFD--LENIVVASRI-AGKKVNVLLRINPDVD-PQVHPYVATGNKNSK 234 (471)
Q Consensus 163 ~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~~a~~-~g~~~~V~lRin~~~~-~~~~~~~~tg~~~sK 234 (471)
+++..|.. .++++...+.+.|+. +..+.+.+ ++.+.+.+.. .+..-.|.|=++.+.- +..-+ .| +....
T Consensus 187 ~~~~iGir~~~~~~~~~~~~~~~g~~~~~~~e~~~~g~~~~~~~i~~~l~~~~~vylS~DiD~lDps~aP--Gv-gtP~p 263 (314)
T PRK13772 187 DYACLGVSRLSNTPALFARADALGVRYVEDVDMQERHLDARLAELDALLDAADHVYLTIDLDVLPAAVAP--GV-SAPAA 263 (314)
T ss_pred eEEEEecCCCCCChhHHHHHHhCCeEEEEhhhhhhcCHHHHHHHHHHHHhcCCeEEEEEEecCcCcccCC--CC-CCCCC
Confidence 45544532 256677788888875 44333323 2222222222 2211236666654331 11111 12 24678
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.|++..|+.++++.+... -+++|+.+-
T Consensus 264 gGlt~~e~~~il~~l~~~---~~v~g~Dvv 290 (314)
T PRK13772 264 YGVPLPVVEEIVLHVRAS---GKLRVADLA 290 (314)
T ss_pred CCCCHHHHHHHHHHHHhc---CCeeEEEEE
Confidence 899999999999987553 257776664
No 295
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.73 E-value=7.7e+02 Score=26.68 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH--hCC-CEEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA--QEG-VFVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~--~~g-v~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.+.+.|..+-+. +.+.++.+++.|. +.++ |...+++-++.|- +.+ +.+.+++-++-..+...+++.
T Consensus 430 ~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~---~~i~-GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~ 505 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETSRTRVDELRERGI---RAVL-GNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREK 505 (558)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHCCC---eEEE-cCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHH
Confidence 57888888888765544 4555666766664 3444 6666777676652 234 335666666655565666766
Q ss_pred CCceEEEEEEe
Q 012098 205 GKKVNVLLRIN 215 (471)
Q Consensus 205 g~~~~V~lRin 215 (471)
.+..++..|++
T Consensus 506 ~~~~~iiar~~ 516 (558)
T PRK10669 506 RPDIEIIARAH 516 (558)
T ss_pred CCCCeEEEEEC
Confidence 77789999986
No 296
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.66 E-value=4.2e+02 Score=25.48 Aligned_cols=76 Identities=22% Similarity=0.208 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCce--EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCEEE----eCCHHHHHHHHHHHHH
Q 012098 130 YKILEHLRKLGCGA--VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVN----VDSEFDLENIVVASRI 203 (471)
Q Consensus 130 ~~vl~~l~~~G~g~--~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~i~----vDs~~el~~l~~~a~~ 203 (471)
..+.+...+.|+.| .+.+...+..+.+.|++.-. |=++.......|+.+++.|..+. .-+++|++...+..++
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~K-IaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~ 137 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYK-IASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLRE 137 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEE-E-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEE-eccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHh
Confidence 45666666677633 34466666666666654222 22333344455666666664322 3556666666666544
Q ss_pred cCC
Q 012098 204 AGK 206 (471)
Q Consensus 204 ~g~ 206 (471)
.+.
T Consensus 138 ~~~ 140 (241)
T PF03102_consen 138 AGN 140 (241)
T ss_dssp HCT
T ss_pred cCC
Confidence 343
No 297
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.64 E-value=8.7e+02 Score=24.39 Aligned_cols=15 Identities=7% Similarity=0.357 Sum_probs=11.1
Q ss_pred EeHHHHHHHHHHHHH
Q 012098 97 YSKPQITRNVEAYKQ 111 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~ 111 (471)
+..+.|++.++.|..
T Consensus 15 ~~~~~lk~~id~ma~ 29 (329)
T cd06568 15 FTVAEVKRYIDLLAL 29 (329)
T ss_pred cCHHHHHHHHHHHHH
Confidence 577888888887753
No 298
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=20.38 E-value=1.1e+03 Score=25.35 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=17.2
Q ss_pred EEEeCCCCcHHHHHHHHhCCCE-EEeCCH
Q 012098 164 CIFNGNGKLLEDLVLAAQEGVF-VNVDSE 191 (471)
Q Consensus 164 Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~ 191 (471)
++..|-..+..++..|+..|.. +.+.+.
T Consensus 347 vIadGGi~~~~di~kAla~GA~~Vm~G~~ 375 (495)
T PTZ00314 347 CIADGGIKNSGDICKALALGADCVMLGSL 375 (495)
T ss_pred EEecCCCCCHHHHHHHHHcCCCEEEECch
Confidence 5555555666777777776653 555554
No 299
>PRK05858 hypothetical protein; Provisional
Probab=20.36 E-value=5.4e+02 Score=27.73 Aligned_cols=76 Identities=16% Similarity=-0.031 Sum_probs=49.6
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc---------------------HHHHHHHHhCCCE-EEeCCHHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL---------------------LEDLVLAAQEGVF-VNVDSEFDLENI 197 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~---------------------~~~l~~a~~~gv~-i~vDs~~el~~l 197 (471)
|.|---.+..|+..+.+.+.+.--|++|+.... .+..+.|...|+. ..|++.+||+..
T Consensus 433 GDG~f~~~~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~a 512 (542)
T PRK05858 433 GDGAFGFSLMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGELVTVPAELGPA 512 (542)
T ss_pred cCchhcCcHHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCHHHHHHH
Confidence 556566789999999999998766677663321 1112334456775 799999999887
Q ss_pred HHHHHHcCCceEEEEEEe
Q 012098 198 VVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 198 ~~~a~~~g~~~~V~lRin 215 (471)
.+.+.+.+.+.-|=++++
T Consensus 513 l~~a~~~~~p~lIev~~~ 530 (542)
T PRK05858 513 LERAFASGVPYLVNVLTD 530 (542)
T ss_pred HHHHHhCCCcEEEEEEEC
Confidence 776655444433444444
No 300
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.31 E-value=7.5e+02 Score=23.90 Aligned_cols=75 Identities=15% Similarity=-0.009 Sum_probs=50.0
Q ss_pred cCCcHHHHHHHHHcCCce---E----EcCHHHHHHHHH----CCCCCCcEEEeCCCCcHHHHHHHHhCCC---E-EEeCC
Q 012098 126 ANNNYKILEHLRKLGCGA---V----LVSGNELRLALR----AGFDPTKCIFNGNGKLLEDLVLAAQEGV---F-VNVDS 190 (471)
Q Consensus 126 aN~~~~vl~~l~~~G~g~---~----vaS~~El~~a~~----~G~~~~~Ii~~g~~k~~~~l~~a~~~gv---~-i~vDs 190 (471)
.-+++.+++.+...|..| | ..+..++..... .|..+ ++ =-|..++..+..+++.|. . ..|+|
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~--lV-Rvp~~~~~~i~r~LD~Ga~giivP~v~t 102 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAP--VV-RVPTNEPVIIKRLLDIGFYNFLIPFVET 102 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCc--EE-ECCCCCHHHHHHHhCCCCCeeeecCcCC
Confidence 356788999998888532 2 224555544332 35432 22 234567889999999874 3 57999
Q ss_pred HHHHHHHHHHHHH
Q 012098 191 EFDLENIVVASRI 203 (471)
Q Consensus 191 ~~el~~l~~~a~~ 203 (471)
.+|++.+.+.++.
T Consensus 103 ae~a~~~v~a~ky 115 (256)
T PRK10558 103 AEEARRAVASTRY 115 (256)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999887653
No 301
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=20.23 E-value=1e+02 Score=26.49 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=35.1
Q ss_pred CCceEEEEEcc-----CCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEE
Q 012098 399 AEISKFDVVGP-----VCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465 (471)
Q Consensus 399 ~~~~~~~i~G~-----tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~ 465 (471)
....+|.|-|. .|.++.- .. ..++||.|+|..-+-|...-..+ .+|.+|+++.+..+
T Consensus 53 ~Rf~TYvI~G~~GSg~I~lNGAA----Ar--l~~~GD~VII~sy~~~~~~e~~~----~~P~vv~vd~~N~i 114 (126)
T TIGR00223 53 KRFSTYAIAGKRGSRIICVNGAA----AR--CVSVGDIVIIASYVTMPDEEART----HRPNVAYFEGDNEI 114 (126)
T ss_pred cEEEEEEEEcCCCCCEEEeCCHH----Hh--cCCCCCEEEEEECCcCCHHHHhc----CCCEEEEECCCCCE
Confidence 34567888885 3433311 11 24899999999655554443333 47999999766443
No 302
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=20.18 E-value=3.8e+02 Score=29.33 Aligned_cols=76 Identities=16% Similarity=0.069 Sum_probs=48.5
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc-----------------------HHHHHHHHhCCCE-EEeCCHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL-----------------------LEDLVLAAQEGVF-VNVDSEFDLE 195 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~-----------------------~~~l~~a~~~gv~-i~vDs~~el~ 195 (471)
|.|-.--+..|+..|.+.+.+.--+++++.+.. .+....|...|+. ..|++.+||+
T Consensus 456 GDG~f~m~~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~ 535 (585)
T CHL00099 456 GDASFQMNLQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLRIKSRKDLK 535 (585)
T ss_pred cchhhhhhHHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEEeCCHHHHH
Confidence 344445578999999999988655566554211 1223344456875 7899999998
Q ss_pred HHHHHHHHcCCceEEEEEEe
Q 012098 196 NIVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 196 ~l~~~a~~~g~~~~V~lRin 215 (471)
...+.+.+.+.+.-|-|+++
T Consensus 536 ~al~~a~~~~~p~liev~v~ 555 (585)
T CHL00099 536 SSLKEALDYDGPVLIDCQVI 555 (585)
T ss_pred HHHHHHHhCCCCEEEEEEEC
Confidence 87777665555444445554
No 303
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=20.18 E-value=3.1e+02 Score=27.81 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=32.4
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEE
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLV 259 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~ 259 (471)
+.++.+..|..+.|++|++... ..+-|.+.++..++++.+++. ++.++
T Consensus 194 v~aIR~~vG~d~~v~iRi~~~D-------------~~~~g~~~~e~~~i~~~Le~~--G~d~i 241 (353)
T cd02930 194 VRAVRAAVGEDFIIIYRLSMLD-------------LVEGGSTWEEVVALAKALEAA--GADIL 241 (353)
T ss_pred HHHHHHHcCCCceEEEEecccc-------------cCCCCCCHHHHHHHHHHHHHc--CCCEE
Confidence 3333344678889999998531 233467888888889888876 45553
No 304
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=20.15 E-value=3.5e+02 Score=29.41 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.--+..|+..+.+.+.+.--|++|+.+.. .+..+.|...|+. ..|++.+||+.
T Consensus 447 GDG~f~m~~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~ 526 (572)
T PRK06456 447 GDGSFLMTGTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGFNVTTYEDIEK 526 (572)
T ss_pred ccchHhcchHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeEEeCCHHHHHH
Confidence 445455577999999999987766666654321 1223334456775 78999999998
Q ss_pred HHHHHHHcCCceEEEEEEe
Q 012098 197 IVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin 215 (471)
..+.+.+.+.+.-|-|+++
T Consensus 527 al~~a~~~~~p~lIev~v~ 545 (572)
T PRK06456 527 SLKSAIKEDIPAVIRVPVD 545 (572)
T ss_pred HHHHHHhCCCCEEEEEEeC
Confidence 8777765555444445554
No 305
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=20.14 E-value=3.8e+02 Score=29.17 Aligned_cols=76 Identities=17% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc----------------------HHHHHHHHhCCCE-EEeCCHHHHHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL----------------------LEDLVLAAQEGVF-VNVDSEFDLEN 196 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~----------------------~~~l~~a~~~gv~-i~vDs~~el~~ 196 (471)
|.|-.-.+..|+..+.+.+++.--|++|+.+.. .+..+.|...|+. ..|++.+||+.
T Consensus 447 GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~eL~~ 526 (572)
T PRK08979 447 GDGSIQMNIQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGIRISDPDELES 526 (572)
T ss_pred cchHhhccHHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEEEECCHHHHHH
Confidence 455556678999999999998766677665221 1122334456775 88999999988
Q ss_pred HHHHHHHc-CCceEEEEEEe
Q 012098 197 IVVASRIA-GKKVNVLLRIN 215 (471)
Q Consensus 197 l~~~a~~~-g~~~~V~lRin 215 (471)
..+.+.+. +.+.-|-|+++
T Consensus 527 al~~a~~~~~~p~lIev~i~ 546 (572)
T PRK08979 527 GLEKALAMKDRLVFVDINVD 546 (572)
T ss_pred HHHHHHhcCCCcEEEEEEeC
Confidence 77766543 44333344554
No 306
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=20.11 E-value=3.7e+02 Score=29.58 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=48.3
Q ss_pred CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCc--------------------------HHHHHHHHhCCCE-EEeCCHH
Q 012098 140 GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKL--------------------------LEDLVLAAQEGVF-VNVDSEF 192 (471)
Q Consensus 140 G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~--------------------------~~~l~~a~~~gv~-i~vDs~~ 192 (471)
|.|-.--+..|+..+.+.|.+.--|++++.+.. .+.-..|...|+. ..|++.+
T Consensus 473 GDG~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~ 552 (612)
T PRK07789 473 GDGCFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGCVGLRCEREE 552 (612)
T ss_pred cchhhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCCeEEEECCHH
Confidence 444444568999999999988665666654321 1122234456875 7899999
Q ss_pred HHHHHHHHHHHc-CCceEEEEEEe
Q 012098 193 DLENIVVASRIA-GKKVNVLLRIN 215 (471)
Q Consensus 193 el~~l~~~a~~~-g~~~~V~lRin 215 (471)
||+...+.+.+. +.+.-|-|+++
T Consensus 553 eL~~al~~a~~~~~~p~lIev~i~ 576 (612)
T PRK07789 553 DVDAVIEKARAINDRPVVIDFVVG 576 (612)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEEC
Confidence 999877766553 44444444444
Done!