Query 012098
Match_columns 471
No_of_seqs 231 out of 2092
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vab_A Diaminopimelate decarbo 100.0 4E-81 1.4E-85 652.3 47.7 403 64-469 23-426 (443)
2 3n2b_A Diaminopimelate decarbo 100.0 1.6E-79 5.4E-84 640.0 45.0 399 64-469 25-425 (441)
3 2o0t_A Diaminopimelate decarbo 100.0 2.1E-72 7.2E-77 591.3 41.4 404 61-469 12-436 (467)
4 1twi_A Diaminopimelate decarbo 100.0 1E-70 3.6E-75 574.0 45.4 399 64-469 4-416 (434)
5 2qgh_A Diaminopimelate decarbo 100.0 2.7E-70 9.2E-75 569.2 47.9 390 75-469 17-407 (425)
6 2j66_A BTRK, decarboxylase; bu 100.0 4.5E-69 1.5E-73 560.7 43.5 389 76-469 2-405 (428)
7 7odc_A Protein (ornithine deca 100.0 2E-69 7E-74 561.4 39.6 375 78-470 16-420 (424)
8 1knw_A Diaminopimelate decarbo 100.0 6.2E-68 2.1E-72 551.2 42.5 373 79-469 14-407 (425)
9 3n29_A Carboxynorspermidine de 100.0 9.2E-70 3.1E-74 561.8 28.3 362 80-469 33-408 (418)
10 3mt1_A Putative carboxynorsper 100.0 3.2E-69 1.1E-73 549.9 28.3 350 91-469 3-354 (365)
11 2p3e_A Diaminopimelate decarbo 100.0 8.3E-66 2.8E-70 534.8 45.6 394 68-469 12-406 (420)
12 2yxx_A Diaminopimelate decarbo 100.0 7.9E-66 2.7E-70 529.3 37.7 369 81-469 3-373 (386)
13 2oo0_A ODC, ornithine decarbox 100.0 1.8E-63 6.2E-68 522.7 41.6 373 78-468 26-428 (471)
14 3btn_A Antizyme inhibitor 1; T 100.0 3.5E-64 1.2E-68 525.8 34.6 373 76-469 15-417 (448)
15 2plj_A Lysine/ornithine decarb 100.0 3.5E-63 1.2E-67 514.2 37.4 372 72-464 35-412 (419)
16 1f3t_A ODC, ornithine decarbox 100.0 1.2E-62 4.1E-67 511.4 40.6 374 78-469 17-419 (425)
17 2nva_A Arginine decarboxylase, 100.0 1.4E-61 4.8E-66 495.3 39.2 359 82-459 5-372 (372)
18 3nzp_A Arginine decarboxylase; 100.0 3.5E-58 1.2E-62 491.6 43.9 392 62-460 8-539 (619)
19 3nzq_A ADC, biosynthetic argin 100.0 2.1E-57 7.1E-62 488.0 42.6 394 61-460 42-588 (666)
20 3n2o_A ADC, biosynthetic argin 100.0 9.8E-57 3.4E-61 481.5 39.4 393 62-460 22-571 (648)
21 1xfc_A Alanine racemase; alpha 100.0 4.9E-39 1.7E-43 329.8 22.5 308 91-440 10-347 (384)
22 2vd8_A Alanine racemase; pyrid 100.0 7.7E-38 2.6E-42 321.5 28.0 336 91-468 10-385 (391)
23 2dy3_A Alanine racemase; alpha 100.0 1.3E-38 4.6E-43 323.9 17.7 305 91-439 2-331 (361)
24 1vfs_A Alanine racemase; TIM-b 100.0 1.5E-37 5.1E-42 318.9 20.7 310 91-440 6-344 (386)
25 1bd0_A Alanine racemase; isome 100.0 1E-36 3.4E-41 312.8 21.4 307 91-443 6-341 (388)
26 3co8_A Alanine racemase; prote 100.0 1.2E-34 4.3E-39 296.5 16.5 328 91-463 8-375 (380)
27 1rcq_A Catabolic alanine racem 100.0 3.2E-32 1.1E-36 276.5 18.2 299 92-438 3-326 (357)
28 3anu_A D-serine dehydratase; P 100.0 5.1E-32 1.7E-36 276.8 17.2 339 87-469 8-371 (376)
29 2rjg_A Alanine racemase; alpha 100.0 6.6E-32 2.3E-36 276.1 14.6 300 91-438 22-348 (379)
30 4ecl_A Serine racemase, vantg; 100.0 6.4E-30 2.2E-34 260.4 20.6 305 92-437 5-338 (374)
31 3kw3_A Alanine racemase; niaid 100.0 1E-28 3.5E-33 251.1 15.1 303 91-437 19-345 (376)
32 3e5p_A Alanine racemase; ALR, 100.0 1E-28 3.5E-33 251.1 12.8 304 92-437 8-336 (371)
33 4a3q_A Alanine racemase 1; iso 100.0 1.3E-27 4.3E-32 243.6 18.7 331 92-468 7-377 (382)
34 3gwq_A D-serine deaminase; str 100.0 8.3E-26 2.8E-30 234.0 31.4 259 86-377 41-337 (426)
35 3mub_A Alanine racemase; alpha 99.9 7.7E-27 2.6E-31 236.9 15.3 302 92-437 8-332 (367)
36 3llx_A Predicted amino acid al 99.9 2.1E-25 7.1E-30 227.8 18.4 259 86-376 9-282 (376)
37 3hur_A Alanine racemase; struc 99.9 2.9E-25 9.9E-30 226.7 14.9 298 93-437 10-340 (395)
38 3cpg_A Uncharacterized protein 99.9 4.4E-21 1.5E-25 188.1 22.9 193 96-304 26-247 (282)
39 3sy1_A UPF0001 protein YGGS; e 99.8 5.2E-18 1.8E-22 162.4 20.9 187 101-303 4-205 (245)
40 1ct5_A Protein (yeast hypothet 99.7 3.2E-16 1.1E-20 151.1 18.9 187 98-303 17-222 (256)
41 3r79_A Uncharacterized protein 99.7 6.4E-15 2.2E-19 140.5 20.2 163 117-303 30-197 (244)
42 3vni_A Xylose isomerase domain 83.7 4.8 0.00016 37.8 9.6 102 237-342 44-153 (294)
43 1ydn_A Hydroxymethylglutaryl-C 80.8 38 0.0013 32.0 18.2 148 146-327 80-258 (295)
44 2ftp_A Hydroxymethylglutaryl-C 79.2 45 0.0015 31.7 16.9 147 146-328 84-263 (302)
45 1i60_A IOLI protein; beta barr 76.6 8.5 0.00029 35.5 8.6 94 242-343 48-145 (278)
46 3obe_A Sugar phosphate isomera 76.0 15 0.00052 34.9 10.4 92 241-342 77-171 (305)
47 3cqj_A L-ribulose-5-phosphate 75.3 9.3 0.00032 35.8 8.7 101 236-343 62-169 (295)
48 3tva_A Xylose isomerase domain 72.4 16 0.00055 34.0 9.5 97 237-342 48-160 (290)
49 3kws_A Putative sugar isomeras 72.2 13 0.00045 34.6 8.8 98 240-342 64-167 (287)
50 2ftp_A Hydroxymethylglutaryl-C 70.7 32 0.0011 32.8 11.2 89 172-277 85-192 (302)
51 1ydn_A Hydroxymethylglutaryl-C 69.1 47 0.0016 31.4 12.0 90 172-278 81-189 (295)
52 3m1r_A Formimidoylglutamase; s 68.9 84 0.0029 30.2 14.1 108 151-264 172-289 (322)
53 1k77_A EC1530, hypothetical pr 68.3 12 0.00039 34.3 7.3 92 244-342 44-145 (260)
54 2q02_A Putative cytoplasmic pr 68.2 45 0.0015 30.3 11.5 87 241-343 52-142 (272)
55 1nvm_A HOA, 4-hydroxy-2-oxoval 68.0 85 0.0029 30.4 13.9 168 74-267 8-205 (345)
56 3dx5_A Uncharacterized protein 67.3 19 0.00066 33.3 8.8 95 239-342 47-144 (286)
57 1bxb_A Xylose isomerase; xylos 65.4 22 0.00077 35.0 9.2 99 240-342 69-182 (387)
58 2x7v_A Probable endonuclease 4 64.7 10 0.00034 35.3 6.2 98 237-342 44-146 (287)
59 3m0m_A L-rhamnose isomerase; b 62.4 42 0.0014 33.9 10.6 98 240-341 107-220 (438)
60 3qc0_A Sugar isomerase; TIM ba 62.1 9.9 0.00034 35.0 5.6 94 241-341 46-143 (275)
61 2a0m_A Arginase superfamily pr 61.5 1.1E+02 0.0039 29.1 13.3 106 151-264 166-280 (316)
62 3ngf_A AP endonuclease, family 61.0 16 0.00053 33.8 6.7 91 243-341 51-151 (269)
63 3hgj_A Chromate reductase; TIM 59.9 46 0.0016 32.4 10.2 53 197-266 209-261 (349)
64 1nvm_A HOA, 4-hydroxy-2-oxoval 59.7 61 0.0021 31.5 11.0 132 130-284 33-189 (345)
65 1eye_A DHPS 1, dihydropteroate 58.6 57 0.0019 30.8 10.2 100 131-250 71-197 (280)
66 1dos_A Aldolase class II; lyas 58.6 50 0.0017 32.4 10.0 44 172-217 17-63 (358)
67 4e38_A Keto-hydroxyglutarate-a 57.7 1.1E+02 0.0039 27.9 13.1 74 120-197 63-143 (232)
68 1qtw_A Endonuclease IV; DNA re 57.7 16 0.00055 33.8 6.2 99 237-342 44-147 (285)
69 3qm3_A Fructose-bisphosphate a 57.2 23 0.00077 34.9 7.2 44 171-216 19-65 (357)
70 1wa3_A 2-keto-3-deoxy-6-phosph 56.7 1E+02 0.0034 26.9 13.2 60 121-184 40-105 (205)
71 1xim_A D-xylose isomerase; iso 56.1 22 0.00076 35.1 7.2 99 240-342 69-182 (393)
72 2ef5_A Arginase; TTHA1496, str 55.7 86 0.0029 29.5 11.1 99 159-264 157-261 (290)
73 2cw6_A Hydroxymethylglutaryl-C 55.4 1.4E+02 0.0047 28.1 18.5 163 131-328 63-260 (298)
74 3u0h_A Xylose isomerase domain 55.2 20 0.0007 32.9 6.5 92 242-342 49-143 (281)
75 1muw_A Xylose isomerase; atomi 55.0 28 0.00097 34.2 7.8 99 240-342 69-182 (386)
76 2nly_A BH1492 protein, diverge 54.9 42 0.0014 31.1 8.4 111 177-302 21-135 (245)
77 1xla_A D-xylose isomerase; iso 53.9 28 0.00097 34.4 7.6 98 241-342 70-182 (394)
78 3eeg_A 2-isopropylmalate synth 51.7 1E+02 0.0034 29.7 10.9 147 96-267 24-209 (325)
79 2yci_X 5-methyltetrahydrofolat 51.1 1.5E+02 0.0053 27.6 11.8 83 130-217 67-171 (271)
80 3lmz_A Putative sugar isomeras 50.8 87 0.003 28.3 10.1 79 235-342 56-134 (257)
81 3q94_A Fructose-bisphosphate a 50.8 88 0.003 29.6 10.1 127 172-345 9-145 (288)
82 3l9w_A Glutathione-regulated p 50.3 63 0.0022 32.2 9.5 82 130-215 17-103 (413)
83 1ydo_A HMG-COA lyase; TIM-barr 50.3 1.5E+02 0.0053 28.1 11.9 148 146-327 82-260 (307)
84 1woh_A Agmatinase; alpha/beta 50.1 1.7E+02 0.0058 27.6 12.4 105 151-264 163-273 (305)
85 1pq3_A Arginase II, mitochondr 49.4 1E+02 0.0034 29.2 10.5 99 160-264 166-272 (306)
86 1aj0_A DHPS, dihydropteroate s 49.3 1E+02 0.0035 29.1 10.3 103 130-252 79-207 (282)
87 3tc3_A UV damage endonuclease; 48.8 1.9E+02 0.0064 27.7 12.4 103 188-306 56-168 (310)
88 1tx2_A DHPS, dihydropteroate s 48.4 99 0.0034 29.4 10.1 102 131-252 105-226 (297)
89 3sl1_A Arginase; metallohydrol 48.4 1E+02 0.0035 30.8 10.4 99 160-264 263-369 (413)
90 2dqw_A Dihydropteroate synthas 48.2 1.7E+02 0.0059 27.7 11.7 101 130-251 93-218 (294)
91 3ivs_A Homocitrate synthase, m 48.0 2E+02 0.0067 28.8 12.6 113 131-264 91-231 (423)
92 2cev_A Protein (arginase); enz 46.9 69 0.0024 30.3 8.8 99 159-264 164-270 (299)
93 3pm6_A Putative fructose-bisph 46.6 74 0.0025 30.5 8.8 47 167-216 11-60 (306)
94 3elf_A Fructose-bisphosphate a 46.4 68 0.0023 31.3 8.7 42 173-216 10-54 (349)
95 1rvg_A Fructose-1,6-bisphospha 46.4 72 0.0025 30.5 8.7 127 172-345 5-137 (305)
96 1wbh_A KHG/KDPG aldolase; lyas 45.7 1E+02 0.0035 27.6 9.4 102 91-198 15-126 (214)
97 2vef_A Dihydropteroate synthas 44.8 1.6E+02 0.0055 28.1 11.0 54 130-186 74-132 (314)
98 3l5l_A Xenobiotic reductase A; 44.2 45 0.0015 32.7 7.1 47 204-267 222-269 (363)
99 4g3h_A Arginase (ROCF); rossma 44.0 2E+02 0.0069 27.6 11.8 100 159-264 174-280 (330)
100 1xfk_A Formimidoylglutamase; f 43.9 2.2E+02 0.0077 27.2 13.2 97 159-264 191-299 (336)
101 1gvf_A Tagatose-bisphosphate a 43.7 89 0.0031 29.6 8.9 128 172-345 6-139 (286)
102 3tr9_A Dihydropteroate synthas 43.2 1.1E+02 0.0037 29.4 9.4 102 131-249 95-221 (314)
103 2isw_A Putative fructose-1,6-b 42.5 1.3E+02 0.0046 28.9 10.0 44 172-217 6-52 (323)
104 4e38_A Keto-hydroxyglutarate-a 42.5 1E+02 0.0034 28.2 8.7 65 120-185 36-108 (232)
105 2ztj_A Homocitrate synthase; ( 42.2 2.6E+02 0.0088 27.4 12.6 110 131-264 55-197 (382)
106 2cw6_A Hydroxymethylglutaryl-C 41.9 2.2E+02 0.0076 26.6 11.8 92 172-280 82-192 (298)
107 3rmj_A 2-isopropylmalate synth 41.7 2E+02 0.0069 28.1 11.5 147 96-266 30-214 (370)
108 3ktc_A Xylose isomerase; putat 41.3 99 0.0034 29.3 9.1 95 242-340 63-167 (333)
109 1gq6_A Proclavaminate amidino 41.3 49 0.0017 31.7 6.8 107 151-264 164-278 (313)
110 3gr7_A NADPH dehydrogenase; fl 40.8 1.4E+02 0.0047 28.8 10.1 44 207-267 209-252 (340)
111 1ydo_A HMG-COA lyase; TIM-barr 39.9 2.5E+02 0.0085 26.6 12.5 89 172-277 83-190 (307)
112 3uuw_A Putative oxidoreductase 39.5 77 0.0026 29.7 7.9 75 127-208 39-120 (308)
113 1vhc_A Putative KHG/KDPG aldol 39.4 1.2E+02 0.0042 27.4 8.8 100 92-197 17-126 (224)
114 3tn4_A Phosphotriesterase; lac 38.8 1.5E+02 0.0051 29.0 9.9 84 131-215 197-300 (360)
115 3nio_A Guanidinobutyrase; PA14 38.7 58 0.002 31.3 6.8 106 151-264 172-286 (319)
116 1uhe_A Aspartate 1-decarboxyla 38.7 17 0.00057 28.6 2.3 71 388-465 18-88 (97)
117 4djd_D C/Fe-SP, corrinoid/iron 38.6 98 0.0033 29.9 8.3 105 131-251 119-236 (323)
118 2aeb_A Arginase 1; hydrolase, 38.4 1E+02 0.0035 29.5 8.6 99 160-264 170-276 (322)
119 2qw5_A Xylose isomerase-like T 38.1 72 0.0025 30.2 7.5 58 240-302 65-128 (335)
120 3pzl_A Agmatine ureohydrolase; 38.0 73 0.0025 30.5 7.4 101 153-264 166-271 (313)
121 2h9a_B CO dehydrogenase/acetyl 37.2 85 0.0029 30.1 7.7 84 84-168 116-208 (310)
122 3p6l_A Sugar phosphate isomera 37.0 1.6E+02 0.0055 26.4 9.5 80 235-343 58-137 (262)
123 3ble_A Citramalate synthase fr 36.9 1.3E+02 0.0045 29.0 9.2 99 148-267 99-224 (337)
124 3paj_A Nicotinate-nucleotide p 36.3 3E+02 0.01 26.4 11.6 38 103-140 154-192 (320)
125 2y5s_A DHPS, dihydropteroate s 36.2 1.5E+02 0.0051 28.1 9.2 102 130-251 87-215 (294)
126 3n9r_A Fructose-bisphosphate a 35.6 1.1E+02 0.0038 29.3 8.1 128 172-345 5-139 (307)
127 2qul_A D-tagatose 3-epimerase; 35.5 72 0.0025 29.2 6.9 98 240-342 47-154 (290)
128 1hjs_A Beta-1,4-galactanase; 4 34.4 3.1E+02 0.011 26.1 13.6 65 238-305 58-136 (332)
129 1f6y_A 5-methyltetrahydrofolat 34.4 2.7E+02 0.0091 25.7 10.5 82 131-217 59-162 (262)
130 3l0g_A Nicotinate-nucleotide p 33.9 3.1E+02 0.011 26.0 10.9 134 98-261 125-278 (300)
131 3plx_B Aspartate 1-decarboxyla 33.5 22 0.00075 28.2 2.3 69 388-463 19-87 (102)
132 3qxb_A Putative xylose isomera 32.5 39 0.0013 31.9 4.5 98 241-341 71-179 (316)
133 2g0w_A LMO2234 protein; putati 31.8 2.6E+02 0.0087 25.7 10.2 84 243-342 71-156 (296)
134 3gnn_A Nicotinate-nucleotide p 31.6 3.4E+02 0.012 25.7 12.3 110 106-249 135-250 (298)
135 4hb7_A Dihydropteroate synthas 31.2 1.8E+02 0.006 27.3 8.5 55 131-188 72-130 (270)
136 3l23_A Sugar phosphate isomera 31.1 1E+02 0.0034 28.9 7.2 94 236-342 58-167 (303)
137 3aam_A Endonuclease IV, endoiv 30.7 1.6E+02 0.0053 26.6 8.3 90 236-342 45-141 (270)
138 2zds_A Putative DNA-binding pr 30.7 38 0.0013 32.1 4.1 99 240-342 51-181 (340)
139 3cny_A Inositol catabolism pro 30.4 91 0.0031 28.7 6.7 94 242-342 57-162 (301)
140 1p9l_A Dihydrodipicolinate red 30.3 2.7E+02 0.0092 25.4 9.7 81 161-262 46-132 (245)
141 3m6y_A 4-hydroxy-2-oxoglutarat 30.2 1.2E+02 0.004 28.1 6.8 85 176-285 174-270 (275)
142 2hk0_A D-psicose 3-epimerase; 29.9 2.2E+02 0.0075 26.3 9.4 97 240-342 66-172 (309)
143 3eye_A PTS system N-acetylgala 29.7 2.7E+02 0.0092 24.0 11.2 26 190-218 128-153 (168)
144 1wv2_A Thiazole moeity, thiazo 29.6 2E+02 0.0068 26.8 8.5 105 80-190 90-217 (265)
145 3ble_A Citramalate synthase fr 29.5 2.7E+02 0.0092 26.7 10.0 103 158-282 86-207 (337)
146 3aal_A Probable endonuclease 4 28.9 1.3E+02 0.0046 27.8 7.6 95 238-342 51-151 (303)
147 1ur4_A Galactanase; hydrolase, 28.4 4.4E+02 0.015 26.0 11.6 65 237-304 86-165 (399)
148 3fwz_A Inner membrane protein 28.3 2.3E+02 0.0079 22.7 10.3 82 130-215 20-106 (140)
149 2h9a_B CO dehydrogenase/acetyl 28.2 2.3E+02 0.0077 27.1 9.0 86 130-217 111-209 (310)
150 3niq_A 3-guanidinopropionase; 27.7 1.9E+02 0.0067 27.6 8.6 106 151-264 169-283 (326)
151 1x7f_A Outer surface protein; 27.0 50 0.0017 32.8 4.1 43 174-218 45-98 (385)
152 2zvr_A Uncharacterized protein 26.9 88 0.003 28.8 5.8 94 242-342 70-171 (290)
153 3txv_A Probable tagatose 6-pho 26.9 2.6E+02 0.0089 28.2 9.4 100 186-300 26-131 (450)
154 3kru_A NADH:flavin oxidoreduct 26.4 2.4E+02 0.0083 27.2 9.0 47 202-266 205-251 (343)
155 1a0c_A Xylose isomerase; ketol 26.2 2.9E+02 0.0098 27.6 9.8 94 244-341 124-232 (438)
156 2fiq_A Putative tagatose 6-pho 25.1 1.3E+02 0.0045 30.1 6.8 103 186-300 19-124 (420)
157 3noy_A 4-hydroxy-3-methylbut-2 25.0 1.4E+02 0.0047 29.2 6.7 40 173-212 95-140 (366)
158 4djd_D C/Fe-SP, corrinoid/iron 24.7 2.6E+02 0.009 26.8 8.8 49 120-168 160-215 (323)
159 2nx9_A Oxaloacetate decarboxyl 24.4 3.3E+02 0.011 27.4 9.9 96 148-264 103-209 (464)
160 1tx2_A DHPS, dihydropteroate s 24.2 4.2E+02 0.014 24.9 10.1 50 118-167 136-204 (297)
161 1zh8_A Oxidoreductase; TM0312, 24.1 1.9E+02 0.0064 27.5 7.8 78 127-208 52-136 (340)
162 3lhl_A Putative agmatinase; pr 23.9 4.4E+02 0.015 24.5 13.5 96 159-264 148-247 (287)
163 1ur4_A Galactanase; hydrolase, 23.5 5.3E+02 0.018 25.3 14.8 65 142-215 27-110 (399)
164 1mxs_A KDPG aldolase; 2-keto-3 23.5 1.5E+02 0.0052 26.7 6.5 72 120-196 55-134 (225)
165 2ho3_A Oxidoreductase, GFO/IDH 23.1 2.8E+02 0.0097 25.8 8.8 76 127-207 33-115 (325)
166 1vc3_B L-aspartate-alpha-decar 22.6 42 0.0014 26.3 2.1 71 388-465 19-90 (96)
167 1z41_A YQJM, probable NADH-dep 22.5 1.7E+02 0.0058 28.0 7.1 44 207-267 209-252 (338)
168 3ohs_X Trans-1,2-dihydrobenzen 22.4 2.3E+02 0.0078 26.7 8.0 78 127-208 36-120 (334)
169 3rc1_A Sugar 3-ketoreductase; 22.4 1.6E+02 0.0056 28.1 7.0 77 127-208 60-143 (350)
170 3iix_A Biotin synthetase, puta 22.4 4.8E+02 0.016 24.4 10.4 99 97-206 84-192 (348)
171 2vp8_A Dihydropteroate synthas 22.1 4.7E+02 0.016 24.9 10.0 53 131-186 106-163 (318)
172 3igs_A N-acetylmannosamine-6-p 21.6 2.1E+02 0.0072 25.8 7.1 72 130-205 39-129 (232)
173 2xvc_A ESCRT-III, SSO0910; cel 21.6 46 0.0016 23.4 1.9 27 232-259 32-58 (59)
174 1yx1_A Hypothetical protein PA 21.6 2.4E+02 0.0081 25.3 7.7 12 239-250 141-152 (264)
175 1ofu_X SULA, hypothetical prot 21.5 3.2E+02 0.011 21.9 8.8 59 154-213 50-117 (119)
176 3dty_A Oxidoreductase, GFO/IDH 21.5 3.2E+02 0.011 26.5 9.0 80 126-207 47-138 (398)
177 3m0z_A Putative aldolase; MCSG 21.5 98 0.0034 28.3 4.6 63 176-263 151-220 (249)
178 3lmz_A Putative sugar isomeras 21.2 4.3E+02 0.015 23.4 10.6 18 129-146 32-50 (257)
179 1r85_A Endo-1,4-beta-xylanase; 21.0 1.2E+02 0.0041 29.9 5.6 90 193-305 180-272 (379)
180 4had_A Probable oxidoreductase 21.0 1.5E+02 0.005 28.2 6.3 104 96-208 28-140 (350)
181 3l5a_A NADH/flavin oxidoreduct 20.9 1E+02 0.0035 30.8 5.2 48 205-267 240-288 (419)
182 4gqa_A NAD binding oxidoreduct 20.7 2.5E+02 0.0086 27.3 8.1 80 127-210 66-152 (412)
183 3vni_A Xylose isomerase domain 20.1 4.2E+02 0.014 23.8 9.2 151 173-347 20-191 (294)
184 3q58_A N-acetylmannosamine-6-p 20.1 2E+02 0.007 25.9 6.7 72 130-205 39-129 (229)
No 1
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=4e-81 Score=652.32 Aligned_cols=403 Identities=35% Similarity=0.619 Sum_probs=371.3
Q ss_pred ccceeeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCce
Q 012098 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGA 143 (471)
Q Consensus 64 ~~~~~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~ 143 (471)
.++|.+. +|+|+++|+++.+|++++ +||+|+||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+||
T Consensus 23 ~~~~~~~-~~~l~~~~~~l~~la~~~-~tP~~vid~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~ 100 (443)
T 3vab_A 23 VNHFEYR-NGVLHAENVSLPEIAKAV-GTPFYVYSRATIERHFRVFHDAFADMDTLVTYALKANSNQAVLTALAKLGAGA 100 (443)
T ss_dssp CCSEEEE-TTEEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEE
T ss_pred cccceee-CCEEEECCeeHHHHHhhc-CCCEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcE
Confidence 4577765 899999999999999998 99999999999999999999999875678999999999999999999999999
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCC
Q 012098 144 VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQV 222 (471)
Q Consensus 144 ~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~ 222 (471)
+|+|.+|++.++++|+++++|+|+||+|++++++.|++.|+. ++|||++|+++|.+.+++.+++++|+||||++.+...
T Consensus 101 dvaS~~E~~~~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~ 180 (443)
T 3vab_A 101 DTVSQGEIRRALAAGIPANRIVFSGVGKTPREMDFALEAGIYCFNVESEPELEILSARAVAAGKVAPVSLRINPDVDAKT 180 (443)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEEECTTCCHHHHHHHHHHTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTT
T ss_pred EEeCHHHHHHHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999986 9999999999999999999999999999999988889
Q ss_pred CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098 223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
|++++||...+|||++++++.++++.+++.+ ++++.|||||+|||+.+.+.++++++++.++++++++.|+++++||+|
T Consensus 181 ~~~i~tG~~~sRfGi~~~e~~~ll~~~~~~~-~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~ldiG 259 (443)
T 3vab_A 181 HAKISTGKSENKFGIPRDKARAAYARAASLP-GLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVG 259 (443)
T ss_dssp CCBC---CCCCSSSEEGGGHHHHHHHHHHST-TEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCCEEECC
T ss_pred CcccccCCCCCCCcCCHHHHHHHHHHHhhCC-CceEEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeC
Confidence 9999999888999999999999999998887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhh
Q 012098 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL 382 (471)
Q Consensus 303 GGl~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l 382 (471)
||||++|...+...++++++++.|++.+.+++++|++|||||++++||+++++|+++|+.++++|+++|+||+++++|.+
T Consensus 260 GG~~i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~l 339 (443)
T 3vab_A 260 GGLGIPYRTPNTPPPPPVAYAQIVAKHIKPLGLKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFVIVDAAMNDLIRPTL 339 (443)
T ss_dssp CCBCCCCCCC---CCCHHHHHHHHHHHHGGGCSEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHH
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEecCHHHhhcccEEEEEEEEEEecCCeeEEEEccccccccchHH
Confidence 99999997653245689999999999988888999999999999999999999999999888899999999999999999
Q ss_pred hhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECC
Q 012098 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSL 462 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~ 462 (471)
|++++++.++.....+.+..+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+++||++|+|++|+++++
T Consensus 340 y~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~~~ 419 (443)
T 3vab_A 340 YDAFHDIRPVIMPNDNAPRIRADFVGPVCETGDYLGLDREVAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGDGE 419 (443)
T ss_dssp HCCCCCEEESBCCCTTSCEEEEEEECSSSSTTCEEEEEEEEECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEEETT
T ss_pred hCccceeEEcccCCCCCCceEEEEEccCCCCCCEEeeccCcCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEECC
Confidence 99988766654322234567899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEec
Q 012098 463 ISIIILP 469 (471)
Q Consensus 463 ~~~~~~~ 469 (471)
++++||+
T Consensus 420 ~~~~ir~ 426 (443)
T 3vab_A 420 RYHVVRP 426 (443)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 9999986
No 2
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=1.6e-79 Score=639.98 Aligned_cols=399 Identities=37% Similarity=0.644 Sum_probs=360.2
Q ss_pred ccceeeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCce
Q 012098 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGA 143 (471)
Q Consensus 64 ~~~~~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~ 143 (471)
...|.+.++|+|+++|+++.+|++++ +||+|+||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+||
T Consensus 25 ~~~~~~~~~~~l~~~~~~l~~la~~~-~TP~~vidl~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~ 103 (441)
T 3n2b_A 25 MDYFNYQEDGQLWAEQVPLADLANQY-GTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGF 103 (441)
T ss_dssp SCSEEECTTSSEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEE
T ss_pred ccccCcccCCEEEECCccHHHHHhhc-CCCEEEEEHHHHHHHHHHHHHhhccCCcEEEEEeccCCCHHHHHHHHHcCCcE
Confidence 46787765899999999999999998 99999999999999999999999876678999999999999999999999999
Q ss_pred EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCC
Q 012098 144 VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQV 222 (471)
Q Consensus 144 ~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~ 222 (471)
+|+|.+|++.++++|+++++|+|+||+|++++++.|+++|+ .++|||++|+++|.+.+++.+++++|+||||++.+...
T Consensus 104 dvaS~~E~~~~~~~G~~~~~I~~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~a~~~~~~~~V~lRvn~~~~~~~ 183 (441)
T 3n2b_A 104 DIVSVGELERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKT 183 (441)
T ss_dssp EESSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTT
T ss_pred EEeCHHHHHHHHHcCCCcccEEEcCCCCCHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHhcCCCcEEEEEeccCCCcCC
Confidence 99999999999999999999999999999999999999998 59999999999999999988999999999999998889
Q ss_pred CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098 223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
|.+++||+.++|||++++++.++++.+++.+ ++++.|+|||+||++.+.+.++++++++.++++++++.|+++++||+|
T Consensus 184 ~~~i~tG~~~sKfG~~~~~~~~~~~~~~~~~-~l~l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~LdiG 262 (441)
T 3n2b_A 184 HPYISTGLRDNKFGITFDRAAQVYRLAHSLP-NLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 262 (441)
T ss_dssp CHHHHHHHHTSSSSBCGGGHHHHHHHHHHCT-TEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECC
T ss_pred CcccccCCCCCcccCCHHHHHHHHHHHhcCC-CeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEC
Confidence 9999999788999999999999999998887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCCHHHHHHHHHHHHhc-CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChh
Q 012098 303 GGLGIDYYHTGAVLPKPRNLIDTVRELVLS-RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPS 381 (471)
Q Consensus 303 GGl~i~y~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~ 381 (471)
||||++|... ..++++++++.|++.+.+ .+++|++|||||++++||+++++|+++|+..+++|+++|+||+++++|.
T Consensus 263 GG~gi~y~~~--~~~~~~~~~~~i~~~l~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vD~gm~~~~rp~ 340 (441)
T 3n2b_A 263 GGLGVVYRDE--LPPQPSEYAKALLDRLERHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPA 340 (441)
T ss_dssp SCCCEEC-------CEECHHHHHHHHHHTTTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC--
T ss_pred CCcccCCCCC--CCCCHHHHHHHHHHHHHhccCCEEEEeCCHHHHhhccEEEEEEEEEEecCCceEEEEccccccccchH
Confidence 9999999643 234678899999998876 5899999999999999999999999999987889999999999999999
Q ss_pred hhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEEC
Q 012098 382 LYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461 (471)
Q Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~ 461 (471)
+|++++++.++.+ ...+..+++|+||+|+++|++.+++.| ++++||+|+|.+||||+++|+++||++|+|++|++++
T Consensus 341 ly~~~~~~~~~~~--~~~~~~~~~v~Gp~C~s~D~l~~~~~l-~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~~ 417 (441)
T 3n2b_A 341 LYQAWQDIIPLRP--RQGEAQTYDLVGPVCETSDFLGKDRDL-VLQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVDG 417 (441)
T ss_dssp -----CCEEESSC--CSSCCEEEEEECSSSSTTCEEEEEEEE-CCCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEET
T ss_pred HhCcccceEEccC--CCCCceeEEEECCcCCCCCEEeecccc-CCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEEC
Confidence 9999887665543 233567899999999999999999988 7999999999999999999999999999999999999
Q ss_pred CeEEEEec
Q 012098 462 LISIIILP 469 (471)
Q Consensus 462 ~~~~~~~~ 469 (471)
+++++||+
T Consensus 418 ~~~~~ir~ 425 (441)
T 3n2b_A 418 NKTYLVRQ 425 (441)
T ss_dssp TEEEEEEC
T ss_pred CcEEEEEe
Confidence 99999986
No 3
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=2.1e-72 Score=591.29 Aligned_cols=404 Identities=26% Similarity=0.429 Sum_probs=366.1
Q ss_pred CccccceeeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcC
Q 012098 61 APVEHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLG 140 (471)
Q Consensus 61 ~~~~~~~~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G 140 (471)
..|..+|.++++|+|+++++++.+|++++ +||+|+||++.|++|+++|+++++. +++++|++|||+++.|++++.+.|
T Consensus 12 ~~w~~~~~~~~~~~l~~~~~~l~~l~~~~-~tP~~vid~~~l~~n~~~l~~~~~~-~~~i~~avKan~~~~v~~~l~~~G 89 (467)
T 2o0t_A 12 NVWPRNTTRDEVGVVCIAGIPLTQLAQEY-GTPLFVIDEDDFRSRCRETAAAFGS-GANVHYAAKAFLCSEVARWISEEG 89 (467)
T ss_dssp TTSCTTEEECSSSCEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHTSS-GGGBEEEGGGCCCHHHHHHHHHHT
T ss_pred ccCCcceEEcCCCeEEECCccHHHHHhhc-CCCEEEEeHHHHHHHHHHHHHhcCC-CcEEEEEeccCCCHHHHHHHHHcC
Confidence 46889999999999999999999999998 9999999999999999999999843 468999999999999999999999
Q ss_pred CceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCC
Q 012098 141 CGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVD 219 (471)
Q Consensus 141 ~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~ 219 (471)
+|++|+|.+|+..++++|+++.+|+|.|+.|+.++++.|++.|+ .++|||++|+++|.+.+++.+++++|+||||++.+
T Consensus 90 ~g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~ 169 (467)
T 2o0t_A 90 LCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVE 169 (467)
T ss_dssp CEEEECSHHHHHHHHHTTCCGGGEEECCTTCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEE
T ss_pred CeEEEeCHHHHHHHHHcCCCcccEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCCeEEEEEcCCCC
Confidence 99999999999999999999889999999999999999999999 89999999999999999888999999999999988
Q ss_pred CCCCcccccCCCCCCCCCCH--hHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcC---
Q 012098 220 PQVHPYVATGNKNSKFGIRN--EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQG--- 293 (471)
Q Consensus 220 ~~~~~~~~tg~~~sKfGi~~--~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g--- 293 (471)
.+.|.+++||+.++|||+++ +++.++++.+++.+ ++++.|||||+||++.+.+.++++++.+.+++++++ +.|
T Consensus 170 ~~~~~~~~~~~~~srfG~~~~~~e~~~~~~~~~~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ 248 (467)
T 2o0t_A 170 AHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATD-HLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEK 248 (467)
T ss_dssp EEETEEEEESSCCSSSSEETTTTHHHHHHHHHHHCS-SEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccccCCCCCCcCCcCCHHHHHHHHHHHHhCC-CCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88899999999999999986 58999999998887 899999999999999888999999999999999986 568
Q ss_pred -CCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHh----cCC---cEEEEcccceeecccceEEEEEEEEEee---
Q 012098 294 -FEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVL----SRN---LNLIIEPGRSLIANTCCLVNHVTGVKTN--- 362 (471)
Q Consensus 294 -~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~----~~~---~~l~~EpGR~lva~ag~lvt~V~~vk~~--- 362 (471)
+++++||+||||+++|...+. .++++++++.++..+. .+| .++++||||++++++|+++++|+++|+.
T Consensus 249 ~~~~~~ln~GGG~~i~y~~~~~-~~~~~~~~~~v~~~i~~~~~~~g~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g 327 (467)
T 2o0t_A 249 TAQIATVDLGGGLGISYLPSDD-PPPIAELAAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVS 327 (467)
T ss_dssp STTCCEEECCCCBCCCSSTTCC-CCCHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECS
T ss_pred ccCCCEEEeCCCcCcCCCCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCeEEeccchheeccceEEEEEEEEEeecccC
Confidence 899999999999999974332 3567787777776654 555 4899999999999999999999999986
Q ss_pred --CceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCC-CCCCCCEEEEcCCCc
Q 012098 363 --GTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELP-TPDRGAGLVVHDAGA 439 (471)
Q Consensus 363 --~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP-~~~~GD~l~~~~~GA 439 (471)
++++|+++|+||+++++|.+|+.+++..++... ...+..+++|+||+|+++|+++.++.|| ++++||+|+|.++||
T Consensus 328 ~~~~~~~~~vd~g~~~~~~p~~y~~~~~~~~~~~~-~~~~~~~~~v~G~~C~s~D~~~~d~~lp~~l~~GD~l~~~~~GA 406 (467)
T 2o0t_A 328 ATAHRRYVSVDGGMSDNIRTALYGAQYDVRLVSRV-SDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGA 406 (467)
T ss_dssp SSCEEEEEEESCCTTTCCHHHHHCCCCCEEECSSC-CCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSS
T ss_pred CCCccEEEEEcCccccccchHHhCCcCceEecCCC-CCCCceeEEEECCCcCCCCEEEeccccCCCCCCCCEEEEcCCCc
Confidence 457899999999999999999987766665432 2334678999999999999999999999 899999999999999
Q ss_pred cccccCCCCCCCCCCcEEEEECCeEEEEec
Q 012098 440 YCMSMASTYNLKMRPPEYWVRSLISIIILP 469 (471)
Q Consensus 440 Y~~~~~~~fn~~~~p~~v~v~~~~~~~~~~ 469 (471)
|+++|+++||++++|++|++++++..+||+
T Consensus 407 Y~~~~~s~fn~~~~p~~v~v~~~~~~~i~r 436 (467)
T 2o0t_A 407 YCYSLSSRYNMVGRPAVVAVHAGNARLVLR 436 (467)
T ss_dssp SSSTTCBCGGGCCCCEEEEEETTEEEEEEC
T ss_pred chHHHhhHhhCCCCCcEEEEeCCeEEEEEc
Confidence 999999999999999999999999988886
No 4
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=1e-70 Score=574.00 Aligned_cols=399 Identities=34% Similarity=0.604 Sum_probs=365.2
Q ss_pred ccceeeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhc------CCCceEEEecccCCcHHHHHHHH
Q 012098 64 EHCFSKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALE------GLNSIIGYAIKANNNYKILEHLR 137 (471)
Q Consensus 64 ~~~~~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~------~~~~~i~yavKaN~~~~vl~~l~ 137 (471)
+++|.++ +|+|+++++++.+|++++ +||+|++|++.|++|+++|++.++ +.+++++|++|||+++.|++++.
T Consensus 4 ~~~~~~~-~~~l~~~~~~~~~l~~~~-~tP~~vidl~~l~~n~~~l~~~~~~a~~~~~~~~~~~~avKan~~~~v~~~l~ 81 (434)
T 1twi_A 4 NDTVEIK-DGRFFIDGYDAIELAEKF-GTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLA 81 (434)
T ss_dssp CTTEEEE-TTEEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHH
T ss_pred CCceeEE-CCEEEECCccHHHHHHhh-CCCEEEEEHHHHHHHHHHHHHhhhhhhcccCCCeEEEEEEccCCCHHHHHHHH
Confidence 3568776 699999999999999998 899999999999999999999997 33578999999999999999999
Q ss_pred HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 138 KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 138 ~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
+.|+|++|+|.+|++.++++|+++.+|+|.||.|++++++.++++|+ .++|||++|+++|.+.+++.+++++|+||||+
T Consensus 82 ~~G~g~~vas~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~~~~i~~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~ 161 (434)
T 1twi_A 82 KLGCGADVVSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINP 161 (434)
T ss_dssp HTTCEEEECSHHHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEEC
T ss_pred HcCCcEEEeCHHHHHHHHHCCCCCCcEEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 99999999999999999999998889999999999999999999999 79999999999999999888999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCCCHhH--HHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Q 012098 217 DVDPQVHPYVATGNKNSKFGIRNEK--LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF 294 (471)
Q Consensus 217 ~~~~~~~~~~~tg~~~sKfGi~~~e--l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~ 294 (471)
+.+.+.|++++||+.++|||+++++ +.++++.+++.+ ++++.|||||+||++.+.+.+.++++++.++++++++.|+
T Consensus 162 g~~~~~~~~~~tG~~~~rfG~~~~~~~~~~~~~~~~~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~ 240 (434)
T 1twi_A 162 NVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEME-YVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGI 240 (434)
T ss_dssp CCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHHHCS-SEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccccCCCCCCccCChhhhHHHHHHHHHHhCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9988889999999778999999988 999999999888 8999999999999998888899999999999999998899
Q ss_pred CCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHHHhcC----C-cEEEEcccceeecccceEEEEEEEEEeeCceeEEE
Q 012098 295 EVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELVLSR----N-LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV 369 (471)
Q Consensus 295 ~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~i 369 (471)
++++||+|||++++|...+. .++++++++.++..+..+ + +++++||||++++++++++++|+++|+..+++|++
T Consensus 241 ~~~~l~~GGg~~~~y~~~~~-~~~~~~~~~~i~~~i~~~~~~~g~~~~~~EpGr~~~~~a~~l~~~V~~vk~~~g~~~~~ 319 (434)
T 1twi_A 241 EIEDVNLGGGLGIPYYKDKQ-IPTQKDLADAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVM 319 (434)
T ss_dssp CCSEEECCCCBCCCSSSSSC-CCCHHHHHHHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEE
T ss_pred CCCEEEECCCcCcCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCCeEEEEccChHhhhhceEEEEEEEEEEecCCcEEEE
Confidence 99999999999999964332 357888888888887664 7 79999999999999999999999999977788999
Q ss_pred EcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCC
Q 012098 370 IDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449 (471)
Q Consensus 370 vD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn 449 (471)
+|+||+++++|.+|+.++++.++... ..+ .+++|+|++||++|++..++.+|++++||+|+|.++|||+++|+++||
T Consensus 320 vd~G~~d~~~~~l~~~~~~~~~~~~~--~~~-~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn 396 (434)
T 1twi_A 320 IDAGMNDMMRPAMYEAYHHIINCKVK--NEK-EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYN 396 (434)
T ss_dssp ESCCTTTCCHHHHHCCCCCEEESBCC--SCE-EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTT
T ss_pred EcCchhcccchHHhcccceeEecCCC--CCC-ceEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchHhhhhhhh
Confidence 99999999999999987765555321 123 789999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEECCeEEEEec
Q 012098 450 LKMRPPEYWVRSLISIIILP 469 (471)
Q Consensus 450 ~~~~p~~v~v~~~~~~~~~~ 469 (471)
++++|++|+++++++++||+
T Consensus 397 ~~~~p~~v~~~~~~~~~ir~ 416 (434)
T 1twi_A 397 ARGRPRMVLTSKKGVFLIRE 416 (434)
T ss_dssp TCCCCEEEEEETTEEEEEEC
T ss_pred CCCCCeEEEEECCcEEEEEe
Confidence 99999999999999999985
No 5
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=2.7e-70 Score=569.21 Aligned_cols=390 Identities=33% Similarity=0.544 Sum_probs=351.7
Q ss_pred EEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHH
Q 012098 75 LYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLA 154 (471)
Q Consensus 75 l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a 154 (471)
+...++++.+|++++ +||+|+||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+|++|+|.+|++.+
T Consensus 17 ~~~~~~~~~~l~~~~-~tP~~vidl~~i~~N~~~l~~~~~~~~~~l~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~ 95 (425)
T 2qgh_A 17 RGSHMFNYEELFQTH-KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRA 95 (425)
T ss_dssp ------CHHHHHHHC-CSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHH
T ss_pred eccccccHHHHHHhh-CCCEEEEEHHHHHHHHHHHHHhcCcCCCEEEEEeccCCCHHHHHHHHHcCCeEEEeCHHHHHHH
Confidence 455689999999997 9999999999999999999999986567899999999999999999999999999999999999
Q ss_pred HHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCC
Q 012098 155 LRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNS 233 (471)
Q Consensus 155 ~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~s 233 (471)
+++|+++++|+|+||.|+.++++.|+++|+ .++|||++|+++|.+.+++.+++++|+||||++.+...|++++||+.++
T Consensus 96 ~~~G~~~~~i~~~g~~k~~~~i~~a~~~gv~~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tg~~~s 175 (425)
T 2qgh_A 96 LKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKEN 175 (425)
T ss_dssp HHTTCCGGGEEECCTTCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTS
T ss_pred HHcCCChhHEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHHHHhcCCCceEEEEEeCCCCCCCCcccccCCCCC
Confidence 999999999999999999999999999998 5999999999999999988899999999999999888999999999999
Q ss_pred CCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCC
Q 012098 234 KFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG 313 (471)
Q Consensus 234 KfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~ 313 (471)
|||++++++.++++.+++.+ ++++.|||||+||+..+.+.++++++++.++++.+++.|+++++||+|||||++| . +
T Consensus 176 RfG~~~~e~~~l~~~~~~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~GGG~~i~y-~-~ 252 (425)
T 2qgh_A 176 KFGVGEKEALEMFLWAKKSA-FLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSY-E-N 252 (425)
T ss_dssp SSSBCHHHHHHHHHHHHHCS-SEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCT-T-S
T ss_pred CCcCCHHHHHHHHHHHHhCC-CccEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcCcCC-C-C
Confidence 99999999999999999888 8999999999999988889999999999999999988899999999999999999 3 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcC
Q 012098 314 AVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVS 393 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~ 393 (471)
...++++++.+.++..+..+++++++||||++++++++++++|+++|+..+++|+++|+||+++++|.+|+.++++.++.
T Consensus 253 ~~~~~~~~~~~~v~~~i~~~~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~~~~~~~~ 332 (425)
T 2qgh_A 253 EETIKLYDYAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVIT 332 (425)
T ss_dssp CCCCCHHHHHHHHHHHTTTCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECS
T ss_pred CCCCCHHHHHHHHHHHHhhcCCEEEEcCchhhhhcceEEEEEEEEEEecCCCEEEEEcCchhcccchhhcCCcceeeecc
Confidence 33457888999999998878889999999999999999999999999877788999999999999999999887655553
Q ss_pred CCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEEEEec
Q 012098 394 PAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISIIILP 469 (471)
Q Consensus 394 ~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~~~~~ 469 (471)
... ..+..+++|+||+||++|++..++.+|++++||+|+|.++|||+++|+++||++++|++|+++++++++||+
T Consensus 333 ~~~-~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~~~~~~~ir~ 407 (425)
T 2qgh_A 333 PSK-GREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALEDHKIRVIRK 407 (425)
T ss_dssp CC----CCEEEEEECSSSSTTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEECC-CEEEEEC
T ss_pred CCC-CCcceEEEEECCCcCCCcEecccccCCCCCCCCEEEEeCCCCchhhhhccccCCCCCeEEEEECCcEEEEEe
Confidence 101 112568999999999999999999999999999999999999999999999999999999999999999986
No 6
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=4.5e-69 Score=560.71 Aligned_cols=389 Identities=26% Similarity=0.402 Sum_probs=339.4
Q ss_pred EEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHH
Q 012098 76 YCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLAL 155 (471)
Q Consensus 76 ~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~ 155 (471)
.++|+++.+|++++ +||+|+||++.|++|+++|+++++. +++++|++|||+++.|++++.+.|+|++|+|.+|++.++
T Consensus 2 ~~~~~~~~~l~~~~-~tP~~vid~~~l~~n~~~l~~~~~~-~~~i~~avKan~~~~v~~~l~~~G~g~~vas~~E~~~~~ 79 (428)
T 2j66_A 2 NLDQAEITALTKRF-ETPFYLYDGDFIEAHYRQLRSRTNP-AIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALAR 79 (428)
T ss_dssp --CHHHHHHHHHHS-CSSEEEEEHHHHHHHHHHHHHTSCT-TEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHH
T ss_pred ccCcccHHHHHHhh-CCCEEEEeHHHHHHHHHHHHHhcCC-CcEEEEEeeeCCCHHHHHHHHHcCCeEEEeCHHHHHHHH
Confidence 46788999999997 9999999999999999999999874 578999999999999999999999999999999999999
Q ss_pred HCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC
Q 012098 156 RAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234 (471)
Q Consensus 156 ~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK 234 (471)
++|+++++|+|.|+.|+.++++.|+++|+ .++|||++|+++|.+.+++.+++++|+||||++.+... .++.+|+..+|
T Consensus 80 ~~G~~~~~I~~~g~~k~~~~i~~a~~~~v~~~~vds~~el~~l~~~a~~~~~~~~V~lrvn~g~~~~~-~~~~~~~~~sr 158 (428)
T 2j66_A 80 HAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFGS-TAIKMGGVPRQ 158 (428)
T ss_dssp HTTCCGGGEEECCSCCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCS
T ss_pred HcCCCcCeEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHhhCCCceEEEEEcCCCCCCC-CccccCCCCCC
Confidence 99999889999999999999999999999 89999999999999999888999999999999876544 56677778999
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCCEEEecCCCCcCCCCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIR-AQGFEVDYLNIGGGLGIDYYHTG 313 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~-~~g~~l~~ldiGGGl~i~y~~~~ 313 (471)
||++++++.++++.+++++ ++++.|||||+||++.+.+.++++++++.+++++++ +.|+++++||+|||++++|...+
T Consensus 159 fG~~~~e~~~~~~~~~~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~l~~GGG~~i~y~~~~ 237 (428)
T 2j66_A 159 FGMDESMLDAVMDAVRSLQ-FTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHE 237 (428)
T ss_dssp SSEEGGGHHHHHHHHHHCT-TEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--C
T ss_pred CCCCHHHHHHHHHHHHhCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEeCCCcCcCCCCCC
Confidence 9999999999999999988 899999999999999888889999999999999994 56999999999999999997543
Q ss_pred CCCCCHHHHHHHHHHHHhc------CCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhh----h
Q 012098 314 AVLPKPRNLIDTVRELVLS------RNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL----Y 383 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~~------~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l----~ 383 (471)
. .++++++++.++..+.. .++++++||||++++++++++++|+++|+..+++|+++|+||+++++|.+ |
T Consensus 238 ~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~EpGr~~~~~ag~l~t~V~~vK~~~g~~~~~~d~g~~~~~~~~~~~~~y 316 (428)
T 2j66_A 238 K-ALDIGKITRTVSDYVQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSM 316 (428)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-------
T ss_pred C-CCCHHHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHhhceEEEEEEEEEEecCCcEEEEECCccccchhhhccchhc
Confidence 3 35678888888887752 25689999999999999999999999999878899999999999999987 7
Q ss_pred hcCcceEEcC--CCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCC-CCCCCCCCcEEEEE
Q 012098 384 DAYQHIELVS--PAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS-TYNLKMRPPEYWVR 460 (471)
Q Consensus 384 ~~~~~~~~~~--~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~-~fn~~~~p~~v~v~ 460 (471)
+.++++.+.. ......+..+++|+||+|+++|+++.++.+|++++||+|+|.++|||+++|++ +||++|+|++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~s~D~l~~d~~lp~~~~GD~l~~~~~GAY~~~~~s~~fn~~~~p~~v~~~ 396 (428)
T 2j66_A 317 RSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR 396 (428)
T ss_dssp ----CEEEEC---------CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE
T ss_pred cCcCcEEeecccCCCCCCCCceEEEEcCCCCCCcEEEecccCCCCCCCCEEEEeCCCcchHHhhhhhhhCCCCCeEEEEE
Confidence 7766655551 11112345689999999999999999999999999999999999999999996 99999999999999
Q ss_pred CCeEEEEec
Q 012098 461 SLISIIILP 469 (471)
Q Consensus 461 ~~~~~~~~~ 469 (471)
+++.++||+
T Consensus 397 ~~~~~~ir~ 405 (428)
T 2j66_A 397 NGSYELIRR 405 (428)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEEc
Confidence 999999986
No 7
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=2e-69 Score=561.36 Aligned_cols=375 Identities=24% Similarity=0.354 Sum_probs=319.6
Q ss_pred cCcCHHHHHHhc--------CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHH
Q 012098 78 EDVRVQDVMETV--------EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149 (471)
Q Consensus 78 ~~i~l~~l~~~~--------~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~ 149 (471)
+++++.+++++. .+||+|+||++.|++|+++|++++++ ++++|++|||+++.|++++.+.|+||+|+|.+
T Consensus 16 ~~~~~~~~i~~~~~~~~~~~~~tP~~v~dl~~l~~n~~~~~~~~~~--~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~ 93 (424)
T 7odc_A 16 EGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPR--VTPFYAVKCNDSRAIVSTLAAIGTGFDCASKT 93 (424)
T ss_dssp SSCCHHHHHHHHHC------CCCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHHTCEEEECSHH
T ss_pred CCCCHHHHHHHHHhhcccCCCCCcEEEeeHHHHHHHHHHHHHhCCC--CeEEEEeccCCcHHHHHHHHHcCCcEEECCHH
Confidence 378888887763 27999999999999999999999974 68999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccccc
Q 012098 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVAT 228 (471)
Q Consensus 150 El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~t 228 (471)
|++.++++|+++++|+|+|++|+.++++.|+++|+. ++|||++|+++|.+.+ ++.+|+||||++.. ..+
T Consensus 94 E~~~~~~~G~~~~~Ii~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~----~~~~v~lRvn~~~~------~~~ 163 (424)
T 7odc_A 94 EIQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAH----PKAKLVLRIATDDS------KAV 163 (424)
T ss_dssp HHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCC------------
T ss_pred HHHHHHHcCCChhhEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhC----CCCeEEEEECCCCC------CCC
Confidence 999999999999999999999999999999999985 8999999999998764 35799999998632 245
Q ss_pred CCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC
Q 012098 229 GNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308 (471)
Q Consensus 229 g~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~ 308 (471)
+..++|||++++++.++++.+++. ++++.|||||+|||+.+.+.+.++++.+.++++.+++.|+++++||+||||+++
T Consensus 164 ~~~~skfG~~~~~~~~~~~~~~~~--~l~l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~ 241 (424)
T 7odc_A 164 CRLSVKFGATLKTSRLLLERAKEL--NIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGS 241 (424)
T ss_dssp -----CCCBCHHHHHHHHHHHHHT--TCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCC
Confidence 667899999999999999998874 799999999999999999999999999999999888899999999999999876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-----cCCcEEEEcccceeecccceEEEEEEEEEeeC--------------ceeEEE
Q 012098 309 YYHTGAVLPKPRNLIDTVRELVL-----SRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG--------------TKNFIV 369 (471)
Q Consensus 309 y~~~~~~~~~~~~~~~~i~~~~~-----~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~--------------~~~~~i 369 (471)
+. ..++++++++.|++.+. ..+++|++|||||++++||+|+++|+++|+.. ...+++
T Consensus 242 ~~----~~~~~~~~a~~i~~~~~~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~~~~~~~~~~~~~~ 317 (424)
T 7odc_A 242 ED----TKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYY 317 (424)
T ss_dssp SS----SSSCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEE
T ss_pred CC----CCCCHHHHHHHHHHHHHHHhcccCCcEEEECCCHHhhhhcEEEEEEEEEEEEccccccccccccccCcceEEEE
Confidence 42 13578889888887765 34689999999999999999999999999753 146788
Q ss_pred EcCCCCCCcChhhhhcCcceEEcCC-CCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCC
Q 012098 370 IDGSMAELIRPSLYDAYQHIELVSP-APQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448 (471)
Q Consensus 370 vD~g~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~f 448 (471)
+|+|+++.++|.+|+.++.+.++.. ..++.+..+++|+||+|+++|++.+++.||++++||+|+|.++|||+++|+++|
T Consensus 318 i~~g~~~~~~~~ly~~~~~~p~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~f 397 (424)
T 7odc_A 318 VNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTF 397 (424)
T ss_dssp ESCCTTTTTHHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCG
T ss_pred EeCCcCCChhhHhhccCccceeeecCCCCCCCeeeEEEECCCCCCCCEecccccCCCCCCCCEEEECCCCCCchhhccCC
Confidence 9999888889999998765333322 122345678999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEE-ECCeEEEEecC
Q 012098 449 NLKMRPPEYWV-RSLISIIILPM 470 (471)
Q Consensus 449 n~~~~p~~v~v-~~~~~~~~~~~ 470 (471)
|++++|++|++ +++.+.+||.+
T Consensus 398 N~~~~p~~v~~~~~~~~~~ir~~ 420 (424)
T 7odc_A 398 NGFQRPNIYYVMSRPMWQLMKQI 420 (424)
T ss_dssp GGCCCCEEEEEEEHHHHHHHC--
T ss_pred CCCCCCeEEEEEcchHHHHHHhc
Confidence 99999999975 56777777754
No 8
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=6.2e-68 Score=551.21 Aligned_cols=373 Identities=29% Similarity=0.466 Sum_probs=334.1
Q ss_pred CcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCC
Q 012098 79 DVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAG 158 (471)
Q Consensus 79 ~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G 158 (471)
+.++.+|++++ +||+|++|++.|++|+++|+ +++ +++|++|||+++.|++++.+.|+||+|+|.+|++.++++|
T Consensus 14 ~~~~~~l~~~~-~tP~~vidl~~l~~N~~~l~-~~~----~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G 87 (425)
T 1knw_A 14 AENLLRLPAEF-GCPVWVYDAQIIRRQIAALK-QFD----VVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAG 87 (425)
T ss_dssp HHHHHHHHHHH-CSSEEEEEHHHHHHHHHTTT-TSS----EEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTT
T ss_pred hhhHHHHHHhh-CCCEEEEEHHHHHHHHHHHh-hCC----cceEeeecCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcC
Confidence 56899999997 89999999999999999999 775 6999999999999999999999999999999999999999
Q ss_pred CCC----CcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCC
Q 012098 159 FDP----TKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSK 234 (471)
Q Consensus 159 ~~~----~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sK 234 (471)
+++ ++|+|+||+|++++++.|+++|+.++|||++|+++|.+.++ ..+++||||++.+.+.|.+++||+.++|
T Consensus 88 ~~~~~~~~~Iv~~g~~k~~~~l~~a~~~~i~~~vds~~el~~l~~~a~----~~~v~lRv~~~~~~~~h~~i~tG~~~~R 163 (425)
T 1knw_A 88 YNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSP----GHRVWLRVNPGFGHGHSQKTNTGGENSK 163 (425)
T ss_dssp CCTTTCTTSEEEEESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHST----TCEEEEEEECSCCSSCTTSCCSSSTTCC
T ss_pred CCCCCCcCeEEEECCCCCHHHHHHHHHcCCEEEECCHHHHHHHHHhhh----hccEEEEECCCCCCCCCcccccCCCCCC
Confidence 998 89999999999999999999999999999999999987653 3589999999998888999999999999
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
||++.+++.++++.+++. ++++.|+|||+||++ +.+.+.++++++.++++++ |+++++||+||||+++|...+.
T Consensus 164 fG~~~~~~~~~~~~~~~~--~l~l~Gl~~H~gs~~-~~~~~~~~~~~~~~~~~~~---G~~~~~ln~GGG~~~~y~~~~~ 237 (425)
T 1knw_A 164 HGIWYTDLPAALDVIQRH--HLQLVGIHMHIGSGV-DYAHLEQVCGAMVRQVIEF---GQDLQAISAGGGLSVPYQQGEE 237 (425)
T ss_dssp CSEEGGGHHHHHHHHHHT--TCEEEEEECCCCCTT-CHHHHHHHHHHHHHHHHHH---TCCCSEEECCCCCCCCCSTTCC
T ss_pred CcCCHHHHHHHHHHHHHC--CCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHh---CCCCcEEEeCCCcccCCCCCCC
Confidence 999999999999998887 799999999999999 8888888887776655544 9999999999999999954332
Q ss_pred CCCCHHHH-------HHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCc
Q 012098 315 VLPKPRNL-------IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQ 387 (471)
Q Consensus 315 ~~~~~~~~-------~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~ 387 (471)
.++++++ .+.++..+. +++++++||||++++++++++++|+++|+..+++|+++|+||+++++|.+|+.++
T Consensus 238 -~~d~~~~~~~~~~~~~~i~~~~~-~~~~~~~EpGr~~v~~ag~l~t~V~~vk~~~~~~~~~vd~G~~d~~~~~l~~~~~ 315 (425)
T 1knw_A 238 -AVDTEHYYGLWNAAREQIARHLG-HPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYH 315 (425)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHT-SCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhC-CCCEEEEcCChHHhhhceEEEEEEEEEEecCCcEEEEECCchhhccchhhhcccc
Confidence 3467777 666777666 7889999999999999999999999999987889999999999999999999987
Q ss_pred ceEEcCCCCCC---CCceEEEEEccCCCCCceeccC-------CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEE
Q 012098 388 HIELVSPAPQD---AEISKFDVVGPVCESADFLGKE-------RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEY 457 (471)
Q Consensus 388 ~~~~~~~~~~~---~~~~~~~i~G~tC~~~D~l~~~-------~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v 457 (471)
++.++...... .+..+++|+||+|+++|+++.+ +.+|++++||+|+|.++|||+++|+++||++++|++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp~~~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v 395 (425)
T 1knw_A 316 HISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEV 395 (425)
T ss_dssp CEEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEE
T ss_pred eeEecCCCCCccccCCceeEEEECCCCCCCCEEeecCCCCccceeCCCCCCCCEEEEeCCCcchHHHHhHhhCCCCCeEE
Confidence 76555422211 1236899999999999999999 7899999999999999999999999999999999999
Q ss_pred EEECCeEEEEec
Q 012098 458 WVRSLISIIILP 469 (471)
Q Consensus 458 ~v~~~~~~~~~~ 469 (471)
+++++++++||+
T Consensus 396 ~~~~~~~~~ir~ 407 (425)
T 1knw_A 396 LFDNGQARLIRR 407 (425)
T ss_dssp EEETTEEEEEEC
T ss_pred EEeCCcEEEEEe
Confidence 999999999987
No 9
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=9.2e-70 Score=561.75 Aligned_cols=362 Identities=17% Similarity=0.173 Sum_probs=304.3
Q ss_pred cCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCC
Q 012098 80 VRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGF 159 (471)
Q Consensus 80 i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~ 159 (471)
+++...++++ +||+||||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+||+|+|.+|++.++++ +
T Consensus 33 ~~~~~~~~~~-~TP~yv~d~~~l~~n~~~l~~~~~~~~~~i~yAvKAN~~~~vl~~l~~~G~G~dvaS~~El~~a~~~-~ 110 (418)
T 3n29_A 33 HPFTMFYEKI-QTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEY-M 110 (418)
T ss_dssp -----CCTTC-CSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCEEEESSHHHHHHHHHH-T
T ss_pred CChhhhHhhC-CCCEEEEeHHHHHHHHHHHHHhhhhcCCEEEEEEccCCCHHHHHHHHHcCCeEEECCHHHHHHHHhh-C
Confidence 3555667786 9999999999999999999999974356899999999999999999999999999999999999987 7
Q ss_pred CCCcEEEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH
Q 012098 160 DPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239 (471)
Q Consensus 160 ~~~~Ii~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~ 239 (471)
+++|+|.||+|+.++|+.|++.|+.++|||++|+++|.+.++ +++|+|||||+.+...|++++||+..+|||+++
T Consensus 111 -~~~Ii~~~~~k~~~el~~A~~~g~~i~vds~~EL~~l~~~a~----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~ 185 (418)
T 3n29_A 111 -DKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQ----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRA 185 (418)
T ss_dssp -CSEEEEEESSCCHHHHHHHHHHCSEEEESSHHHHHHHGGGCT----TSEEEEEBCCCCC----------CTTCCSSBCG
T ss_pred -CCCEEEECCCCCHHHHHHHHHcCCeEEECCHHHHHHHHHhcC----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCH
Confidence 578999999999999999999999999999999999987653 589999999999888999999998889999999
Q ss_pred hHHHHHHHHHHcCCCCc-eEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNEL-KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPK 318 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l-~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~ 318 (471)
+++.+. .+ +++|||||+||| .+.+.|.++++.+.+.+ .+.|+++++||+|||||++|.. ++
T Consensus 186 ~~~~~~---------~l~~l~Glh~HigSq-~~~~~~~~~~~~~~~~~---~~~g~~l~~ldiGGGf~i~y~~-----~~ 247 (418)
T 3n29_A 186 KDFENV---------DLNAIEGLHFHALCE-ESADALEAVLKVFEEKF---GKWIGQMKWVNFGGGHHITKKG-----YD 247 (418)
T ss_dssp GGGTTC---------CCTTCCEEECCCCSS-BCHHHHHHHHHHHHHHH---GGGTTTCSEEECCSCBCTTSTT-----CC
T ss_pred HHHHHh---------hcCceEEEEEecCCC-CCHHHHHHHHHHHHHHH---HHhCCCCCEEEeCCCcCCCCCC-----CC
Confidence 887541 23 799999999999 68888888877765543 3458899999999999999852 46
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCC----CCCCc----ChhhhhcC----
Q 012098 319 PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGS----MAELI----RPSLYDAY---- 386 (471)
Q Consensus 319 ~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g----~~~~~----~~~l~~~~---- 386 (471)
++++++.|++.+.+++++|++||||+++++||+++++|+++|+. +++|+++|+| |++++ +|.+|+.+
T Consensus 248 ~~~~~~~i~~~~~~~~~~ii~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~~~~m~d~~~~~~rp~l~~a~~~~~ 326 (418)
T 3n29_A 248 VEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIEN-EKQIAILDTSSEAHMPDTIIMPYTSEVLNARILAT 326 (418)
T ss_dssp HHHHHHHHHHHHHHHTCEEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCHHhhhhcEEEEEEEEEEEeC-CCEEEEECCcccccchhhhccCcCceeeccccccc
Confidence 89999999999888889999999999999999999999999987 7889999999 55554 78888864
Q ss_pred cceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEE-CCeEE
Q 012098 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR-SLISI 465 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~-~~~~~ 465 (471)
|++.++.. ...+..+++|+||+|+++|+|.++..+|++++||+|+|.++|||+++|+++||++|+|++|+++ ++.+.
T Consensus 327 h~~~~~~~--~~~~~~~~~v~Gp~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~s~ss~fN~~~~p~~v~v~~~~~~~ 404 (418)
T 3n29_A 327 RENEKISD--LKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQ 404 (418)
T ss_dssp TTCCBCCC--CCTTCEEEEEECSSSCTTCEEEEEEESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEECTTSCEE
T ss_pred cccccccC--CCCCceEEEEEcCCCCCCCEEeecccCCCCCCCCEEEEeCccchhHHHhccccCCCCCCEEEEEcCCcEE
Confidence 44444322 1235678999999999999999877778899999999999999999999999999999999995 77888
Q ss_pred EEec
Q 012098 466 IILP 469 (471)
Q Consensus 466 ~~~~ 469 (471)
+||+
T Consensus 405 ~iRr 408 (418)
T 3n29_A 405 MIRE 408 (418)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8886
No 10
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=3.2e-69 Score=549.90 Aligned_cols=350 Identities=18% Similarity=0.190 Sum_probs=288.4
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG 170 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~ 170 (471)
+||+||||++.|++|+++|+++++..+++++|++|||+++.|++++.+.|+|++|+|.+|++.+++. + +.+|+|.||+
T Consensus 3 gtP~yv~d~~~l~~n~~~l~~~~~~~~~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~E~~~~~~~-~-~~~ii~~~~~ 80 (365)
T 3mt1_A 3 ETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRER-F-GKETHAYSVA 80 (365)
T ss_dssp CSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHH-T-CSEEEEEESC
T ss_pred CCCEEEEeHHHHHHHHHHHHHHHhhcCCEEEEEehhcCCHHHHHHHHHhCCeEEECCHHHHHHHHhh-C-CCceEEECCC
Confidence 8999999999999999999999963356899999999999999999999999999999999999985 7 4789999999
Q ss_pred CcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 171 KLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 171 k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
|+.++++.|++.|+.+++||++|+++|.+.++ ..+|+|||||+.+.+.|.+++||...+|||++++++.+.
T Consensus 81 k~~~el~~a~~~g~~i~vds~~el~~l~~~a~----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~----- 151 (365)
T 3mt1_A 81 YGDNEIDEVVSHADKIIFNSISQLERFADKAA----GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER----- 151 (365)
T ss_dssp CCTTTHHHHHHHCSEEEESSHHHHHHHGGGGT----TSEEEEEECCC----------------CCSBCCHHHHHT-----
T ss_pred CCHHHHHHHHHcCCEEEECCHHHHHHHHHHhc----cCCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh-----
Confidence 99999999999998999999999999988754 378999999998888899999998889999999987642
Q ss_pred cCCCCc-eEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHHHHHH
Q 012098 251 AHPNEL-KLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329 (471)
Q Consensus 251 ~~~~~l-~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~i~~~ 329 (471)
.+ ++.|+|||+|||+.+.+.|.++++.+.+++++ .|+++++||+|||||++|.. ++++++++.+++.
T Consensus 152 ----~l~~~~Glh~HigSq~~~~~~~~~~~~~~~~~~~~---~g~~~~~ldiGGG~~i~y~~-----~~~~~~~~~i~~~ 219 (365)
T 3mt1_A 152 ----VMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGA---LIARVDWVSLGGGIHFTGDD-----YPVDAFSARLRAF 219 (365)
T ss_dssp ----TGGGCSEEEECCC--CCSHHHHHHHHHHHHHHHHH---HHTTSSEEECCSCCCTTSTT-----CCHHHHHHHHHHH
T ss_pred ----ccCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---hCCCCCEEEeCCCcCCCCCC-----CCHHHHHHHHHHH
Confidence 23 69999999999999999999888887766654 37899999999999999852 4689999999999
Q ss_pred HhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCCCceEEEEEcc
Q 012098 330 VLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDAEISKFDVVGP 409 (471)
Q Consensus 330 ~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~ 409 (471)
+.+++++|++||||+++++||+++++|+++|+. +++|+++|+|+++.+...+...+.+. +. + +.+..+++|+||
T Consensus 220 ~~~~~~~l~~EPGR~lv~~ag~lv~~V~~~k~~-~~~~~~vD~g~~~~~~~~~~~~~~p~-l~-~---~~~~~~~~v~Gp 293 (365)
T 3mt1_A 220 SDRYGVQIYLEPGEASITKSTTLEVTVLDTLYN-GKNLAIVDSSIEAHMLDLLIYRETAK-VL-P---NEGSHSYMICGK 293 (365)
T ss_dssp HHHHTCEEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESCCHHHHCHHHHHTTCCCC-CS-S---CCSSEEEEEECS
T ss_pred HHHhCcEEEEeCchHhhccceEEEEEEEEEEEC-CcEEEEEcCccccCChHHhcCCcCce-ec-c---CCCceEEEEEeC
Confidence 888889999999999999999999999999987 78999999995433222222222221 11 1 235678999999
Q ss_pred CCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCe-EEEEec
Q 012098 410 VCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLI-SIIILP 469 (471)
Q Consensus 410 tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~-~~~~~~ 469 (471)
+|+++|++.++..+|++++||+|+|.++|||+++|+++||++|+|++|++++++ +.+||+
T Consensus 294 ~C~s~D~l~~~~~~~~l~~GD~l~~~~~GAY~~~~~s~fn~~~~p~~v~v~~~~~~~~irr 354 (365)
T 3mt1_A 294 SCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVRE 354 (365)
T ss_dssp SCCSSCEEEEEEESSCCCTTCEEEESSCCTTSTTSCCCGGGCCCCEEEEECTTSCEEEEEC
T ss_pred CCCccCEEcccccCCCCCCCCEEEEecccchhhhhcccccCCCCCcEEEEECCCcEEEeee
Confidence 999999999888888999999999999999999999999999999999998875 888886
No 11
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=100.00 E-value=8.3e-66 Score=534.85 Aligned_cols=394 Identities=38% Similarity=0.681 Sum_probs=343.2
Q ss_pred eeccCCeEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcC
Q 012098 68 SKKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVS 147 (471)
Q Consensus 68 ~~~~~g~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS 147 (471)
.++ +|.|+++++++.+|++++ +||+|++|++.|++|+++|++.+++ .+++|++|||+++.|++.+.+.|+||+|+|
T Consensus 12 ~~~-~~~l~~~~~~~~~l~~~~-~tP~~vidl~~l~~N~~~l~~~~~~--~~l~~vvKan~~~~v~~~l~~~G~~~~vas 87 (420)
T 2p3e_A 12 EYR-DGELFIEGVSLKELAQTF-GTPLYVYSSNFIKERFEAYRKAFPD--ALICYAVKANFNPHLVKLLGELGAGADIVS 87 (420)
T ss_dssp EEE-TTEEEETTEEHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHSTT--SEEEEEGGGCCCHHHHHHHHHTTCEEEESS
T ss_pred hcc-CceeEECCccHHHHHHhh-CCCEEEEEHHHHHHHHHHHHHhCCc--CeEEEEEecCCCHHHHHHHHHcCCeEEEeC
Confidence 555 699999999999999998 8999999999999999999999875 489999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccc
Q 012098 148 GNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYV 226 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~ 226 (471)
.+|+..++++|+++.+|+|.||.|+.++++.++++++ .++|||++++++|.+.+++.+++++|+||||++.+.+.|.++
T Consensus 88 ~~E~~~~~~~G~~~~~Il~~g~~~~~~~l~~a~~~~i~~~~vds~~~l~~l~~~a~~~~~~~~v~lRvn~~~~~~~~~~i 167 (420)
T 2p3e_A 88 GGELYLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYI 167 (420)
T ss_dssp HHHHHHHHHTTCCGGGEEECSSCCCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------
T ss_pred HHHHHHHHHcCCChhHEEEeCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCCccc
Confidence 9999999999999888999999999999999999999 699999999999999988889999999999999888788899
Q ss_pred ccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCC
Q 012098 227 ATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG 306 (471)
Q Consensus 227 ~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~ 306 (471)
+||...+|||++++++.++++.+++++ ++++.|+|+|+||+..+.+.+.++++++.++++.+++.|++++++|+|||++
T Consensus 168 dtG~~~~R~G~~~~e~~~~~~~~~~~~-~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~Ggg~~ 246 (420)
T 2p3e_A 168 ATGMQKSKFGVDIREAQKEYEYASKLE-NLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLG 246 (420)
T ss_dssp ------CCSCEEGGGHHHHHHHHHTCT-TEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBC
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHhCC-CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 999555999999999999999999988 8999999999999887777788899999999999988899999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcC
Q 012098 307 IDYYHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386 (471)
Q Consensus 307 i~y~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~ 386 (471)
++|...+. .++++.+++.+|..+..++.+++.||||++++++++++++|+++|+..+++|+++|+||++++++.+|+.+
T Consensus 247 ~~~~~~~~-~~~~~~~~~~vr~g~~~yg~~~~~e~Gr~~~~~a~~l~t~Vi~vk~~~g~~~a~v~~G~~dg~~~~l~~~~ 325 (420)
T 2p3e_A 247 IKYKPEDK-EPAPQDLADLLKDLLENVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAY 325 (420)
T ss_dssp CCCSTTCC-CCCHHHHHHHHTTTC--CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCC
T ss_pred cCCCCCCC-CCCHHHHHHHHHHHHHhcCCEEEEeCCHHHHhhceEEEEEEEEEEecCCcEEEEEcCchhcccchhhhCcc
Confidence 99864322 34678889999998888899999999999999999999999999998788999999999999999999987
Q ss_pred cceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEEE
Q 012098 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISII 466 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~~ 466 (471)
+++.++.+. ..+.++++|+|++||+.|++..++.+|++++||+|+|.++|||+++|+++||++++|++|+++++++++
T Consensus 326 ~~~v~v~~~--g~~~~~~~i~G~~Cms~D~~~~d~~lp~~~~GD~v~~~~~gAY~~~~~s~fn~~~~p~~~~~~~~~~~~ 403 (420)
T 2p3e_A 326 HHIIPVETK--ERKKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVENGSVKL 403 (420)
T ss_dssp CCEEESBCC--C---CEEEEECSSSSTTCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEETTEEEE
T ss_pred ceeEecCCC--CCCceeEEEEccCCCCccEEeecccCCCCCCCCEEEEeCCCcchhhhhhhhhcCCCCeEEEEeCCcEEE
Confidence 665455321 123468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 012098 467 ILP 469 (471)
Q Consensus 467 ~~~ 469 (471)
||+
T Consensus 404 ir~ 406 (420)
T 2p3e_A 404 IRK 406 (420)
T ss_dssp EEC
T ss_pred EEe
Confidence 986
No 12
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=100.00 E-value=7.9e-66 Score=529.34 Aligned_cols=369 Identities=34% Similarity=0.507 Sum_probs=330.6
Q ss_pred CHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCC
Q 012098 81 RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFD 160 (471)
Q Consensus 81 ~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~ 160 (471)
.+.+|++++ +||+|++|+++|++|+++|++.++..+.+++|++|||+++.|++.+.+.|+||+|+|.+|++.++++|++
T Consensus 3 ~~~~l~~~~-~tP~~vidl~~l~~N~~~l~~~~~~~~~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G~~ 81 (386)
T 2yxx_A 3 ILRKVAEIH-GTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVP 81 (386)
T ss_dssp HHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCC
T ss_pred HHHHHHHhc-CCCEEEEEHHHHHHHHHHHHHhhccCCceEEEEEeeCCCHHHHHHHHHcCCeEEEcCHHHHHHHHHcCCC
Confidence 367888987 8999999999999999999999986556899999999999999999999999999999999999999999
Q ss_pred CCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH
Q 012098 161 PTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239 (471)
Q Consensus 161 ~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~ 239 (471)
+++|+|.||+|++++++.|+++|+ .++|||++|+++|.+.+++ +.+++||||++.+.+.|.+++||..++|||+++
T Consensus 82 ~~~Il~~~~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~~---~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~ 158 (386)
T 2yxx_A 82 SHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPE---GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPL 158 (386)
T ss_dssp GGGEEECCSCCCHHHHHHHHHTTCCEEEECCHHHHHHHHHHCCT---TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEG
T ss_pred hhhEEEeCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcCc---CCeEEEEECCCCCCCCCcccccCCCCCCCCCCh
Confidence 989999999999999999999999 8999999999999876532 579999999999888899999995569999999
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCH
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKP 319 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~ 319 (471)
++ .++++ .+.+ ++++.|+|+|+||++.+.+.+.++++++.++++.+ +++++|+||||+++|.. + .+++
T Consensus 159 ~~-~~~~~--~~~~-~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l-----~~~~~n~GGG~~~~~~~--~-~~~~ 226 (386)
T 2yxx_A 159 ED-LDSFM--ERFR-SMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY-----GFEEINIGGGWGINYSG--E-ELDL 226 (386)
T ss_dssp GG-HHHHH--HHHT-TSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH-----TCSEEECCCCBCCCSSS--C-CCCH
T ss_pred hH-HHHHh--hccC-CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-----CCCEEEECCCcCcCCCC--C-CCCH
Confidence 88 77777 4455 89999999999999887888888888877777766 67899999999999863 2 4577
Q ss_pred HHHHHHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcceEEcCCCCCCC
Q 012098 320 RNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPQDA 399 (471)
Q Consensus 320 ~~~~~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~~~~~~~~~~~~ 399 (471)
+.+++.++..+..++ ++++||||++++++++++|+|+++|+..++.|+++|+||+++++|.+|+.++++.++.+. .
T Consensus 227 ~~~~~~vr~~i~~y~-~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~~~i~~~--~- 302 (386)
T 2yxx_A 227 SSYREKVVPDLKRFK-RVIVEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQ--G- 302 (386)
T ss_dssp HHHHHHTGGGGTTCS-EEEEEECHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCC--C-
T ss_pred HHHHHHHHHHHHhCC-eEEecCcceeeccccEEEEEEEEEEecCCcEEEEEeCccccccchHHhcccCceEeccCC--C-
Confidence 888999998887776 899999999999999999999999998778999999999999999999987765555422 1
Q ss_pred CceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE-ECCeEEEEec
Q 012098 400 EISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV-RSLISIIILP 469 (471)
Q Consensus 400 ~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v-~~~~~~~~~~ 469 (471)
+.++++|+||+||++|+++.++.+|++++||+|+|.++|||+++|+++||++++|++|++ ++++++.||+
T Consensus 303 ~~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~~~~~~~~~~~~ir~ 373 (386)
T 2yxx_A 303 KEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRR 373 (386)
T ss_dssp CSEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEEC
T ss_pred CceEEEEEcCCCCCCCEEeeccccCCCCCCCEEEEeCCCCchHHHhhhhhCCCCCcEEEEECCCeEEEEEe
Confidence 267899999999999999999999999999999999999999999999999999999999 8889999986
No 13
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.8e-63 Score=522.71 Aligned_cols=373 Identities=24% Similarity=0.347 Sum_probs=320.8
Q ss_pred cCcCHHHHHHhc--------CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHH
Q 012098 78 EDVRVQDVMETV--------EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGN 149 (471)
Q Consensus 78 ~~i~l~~l~~~~--------~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~ 149 (471)
++.++.+++++. .+||+|+||++.|++|+++|++++++ .+++|++|||+++.|++++.+.|.||+|+|.+
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~~~tP~~viDl~~l~~n~~~l~~~~~~--~~i~yavKAn~~~~v~~~l~~~G~g~dvaS~~ 103 (471)
T 2oo0_A 26 EGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPR--VTPFYAVKCNDSKAIVKTLAATGTGFDCASKT 103 (471)
T ss_dssp TTCCHHHHHHHHHHHTTTSSCCCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHHTCEEEECSHH
T ss_pred CCCCHHHHHHHHHHhhhcCCCCCcEEEEEHHHHHHHHHHHHHhCCC--CeEEEEEeeCCCHHHHHHHHHcCCcEEEeCHH
Confidence 456777666542 37999999999999999999999974 68999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCccccc
Q 012098 150 ELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVAT 228 (471)
Q Consensus 150 El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~t 228 (471)
|++.++++|+++++|+|+||.|+.++++.|+++|+ .++|||++|+++|.+.+ ++++|+||||++.+. .+
T Consensus 104 E~~~~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~----~~~~V~lRvn~g~~~------~~ 173 (471)
T 2oo0_A 104 EIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAH----PKAKLVLRIATDDSK------AV 173 (471)
T ss_dssp HHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEECCCCTT------SS
T ss_pred HHHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHhC----CCCeEEEEEcCCCCC------CC
Confidence 99999999999999999999999999999999999 49999999999998753 458999999987543 35
Q ss_pred CCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC
Q 012098 229 GNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID 308 (471)
Q Consensus 229 g~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~ 308 (471)
+..++|||++.+++.++++.+++. ++++.|+|||+||++.+.+.+.++++++.++++.+++.|+++++||+||||++.
T Consensus 174 ~~~~~RfG~~~~~~~~~~~~~~~~--~l~l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~~~~G~~~~~ldiGGG~~~~ 251 (471)
T 2oo0_A 174 CRLSVKFGATLRTSRLLLERAKEL--NIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGS 251 (471)
T ss_dssp BCCTTTSCBCHHHHHHHHHHHHHT--TCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCC
Confidence 567999999999999999988876 799999999999999888999999998888998888899999999999999876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEcccceeecccceEEEEEEEEEeeC--------------ceeEEE
Q 012098 309 YYHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNG--------------TKNFIV 369 (471)
Q Consensus 309 y~~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~--------------~~~~~i 369 (471)
|.. .++++++++.++..+.. .++++++||||++++++|+|+++|+++|+.. ...++.
T Consensus 252 ~~~----~~~~~~~~~~i~~~l~~~~p~~~~~~li~EpGR~~v~~ag~l~t~V~~vK~~~~~~v~y~~~~~~~~~~~~~~ 327 (471)
T 2oo0_A 252 EDV----KLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYY 327 (471)
T ss_dssp SSS----SSCHHHHHHHHHHHHHHHSCGGGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEE
T ss_pred CCC----CCCHHHHHHHHHHHHHHHhcccCCcEEEecCccceecCcEEEEEEEEEEEecCccccccccccccCCceEEEE
Confidence 531 24688899999887764 3579999999999999999999999999853 123444
Q ss_pred EcCCCCCCcChhhhhcCcceEEcCC-CCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCC
Q 012098 370 IDGSMAELIRPSLYDAYQHIELVSP-APQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTY 448 (471)
Q Consensus 370 vD~g~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~f 448 (471)
++.|+.+.++|.+|+.++++.++.. .....+..+++|+||+|+++|+++.++.||++++||+|+|.++|||+++|+++|
T Consensus 328 i~~G~~~~~~~~L~~~~~~~~vl~~~~~~~~~~~~~~I~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~s~~s~f 407 (471)
T 2oo0_A 328 VNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTF 407 (471)
T ss_dssp ESCCTTTGGGHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCG
T ss_pred EECCcccchhhHhhccCcceeeeccCCCCCCCeeEEEEECCCCCCCCEEeeccCCCCCCCCCEEEEeCCCcchhhhhccc
Confidence 8888888889999998876544422 112234478999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEE-ECCeEEEEe
Q 012098 449 NLKMRPPEYWV-RSLISIIIL 468 (471)
Q Consensus 449 n~~~~p~~v~v-~~~~~~~~~ 468 (471)
|++++|++|++ +++.+.+||
T Consensus 408 N~~~~p~~v~~~~~~~~~~ir 428 (471)
T 2oo0_A 408 NGFQRPTIYYVMSGPAWQLMQ 428 (471)
T ss_dssp GGCCCCEEEEEEEHHHHHHHH
T ss_pred cCCCCCeEEEEecCCceeEEE
Confidence 99999999997 445566555
No 14
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=3.5e-64 Score=525.82 Aligned_cols=373 Identities=21% Similarity=0.321 Sum_probs=310.0
Q ss_pred EEcCcCHHHHHHhc-------CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCH
Q 012098 76 YCEDVRVQDVMETV-------EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSG 148 (471)
Q Consensus 76 ~~~~i~l~~l~~~~-------~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~ 148 (471)
.-+++++.+++++. .+||+|+||++.|++|+++|++++++ .+++|++|||+++.|++++.+.|+||+|+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~tP~~vid~~~l~~n~~~~~~~~~~--~~i~yavKAn~~~~v~~~l~~~G~g~~vaS~ 92 (448)
T 3btn_A 15 LDEGTNLGNVIDNYVYEHTLTGKNAFFVGDLGKIVKKHSQWQTVVAQ--IKPFYTVKCNSTPAVLEILAALGTGFACSSK 92 (448)
T ss_dssp ECTTCCHHHHHHHHHHHHHHSSCCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHHTCEEEESSH
T ss_pred ecCCCcHHHHHHHHHHhcccCCCCCEEEEeHHHHHHHHHHHHHhCCC--CeEEEEeeeCCCHHHHHHHHHcCCcEEEeCH
Confidence 34688999888763 48999999999999999999999974 6899999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccc
Q 012098 149 NELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVA 227 (471)
Q Consensus 149 ~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~ 227 (471)
+|++.++++|+++++|+|+||.|+.++++.|+++|+ .++|||++|+++|.+.+ ++++|+||||++.+. .
T Consensus 93 ~E~~~~~~aG~~~~~iv~~g~~k~~~ei~~a~~~gv~~~~vds~~el~~l~~~~----~~~~v~lRin~g~~~------~ 162 (448)
T 3btn_A 93 NEMALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKVLLHIATEDNI------G 162 (448)
T ss_dssp HHHHHHHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCCCC---------
T ss_pred HHHHHHHHcCCChhhEEEcCCCCCHHHHHHHHHcCCCEEEeCCHHHHHHHHHhC----CCCeEEEEEecCCCc------c
Confidence 999999999999999999999999999999999998 59999999999998753 468999999998653 2
Q ss_pred cCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCc
Q 012098 228 TGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGI 307 (471)
Q Consensus 228 tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i 307 (471)
++..++|||++.+++.++++.+++. ++++.|+|||+||++.+.+.+.++++++.++++.+++.|+++++||+||||+.
T Consensus 163 ~~~~~~RfG~~~~~~~~~~~~~~~~--~l~~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~~~~~G~~~~~ldiGGG~~~ 240 (448)
T 3btn_A 163 GEDGNMKFGTTLKNCRHLLECAKEL--DVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTG 240 (448)
T ss_dssp -----CCCCBCHHHHHHHHHHHHHH--TCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHhC--CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCC
Confidence 4556999999999999999988875 79999999999999988888999998888889888899999999999999943
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc-----CCcEEEEcccceeecccceEEEEEEEEEeeC--------------cee-E
Q 012098 308 DYYHTGAVLPKPRNLIDTVRELVLS-----RNLNLIIEPGRSLIANTCCLVNHVTGVKTNG--------------TKN-F 367 (471)
Q Consensus 308 ~y~~~~~~~~~~~~~~~~i~~~~~~-----~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~--------------~~~-~ 367 (471)
.| ++++++++.++..+.. .++++++||||++++++++|+++|+++|+.. ++. +
T Consensus 241 ~~-------~~~~~~~~~v~~~i~~~~p~~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~~vsyg~~~~~~~~~~~ 313 (448)
T 3btn_A 241 TE-------IQLEEVNHVISPLLDIYFPEGSGIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFV 313 (448)
T ss_dssp CH-------HHHHHHHHHHHHHHHHHSCTTSCCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEE
T ss_pred CC-------CCHHHHHHHHHHHHHHHhcccCCcEEEEeCCcceeeeeEEEEEEEEEEEecccccccccccccccCCceEE
Confidence 22 2357788888877654 3479999999999999999999999999853 222 3
Q ss_pred EEEcCCCCCCcChhhhhcCcceEEc-CCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCC
Q 012098 368 IVIDGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMAS 446 (471)
Q Consensus 368 ~ivD~g~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~ 446 (471)
+.++.||++.+++.+|+.++++.++ .......+..+++|+||+|+++|+++.++.||++++||+|+|.++|||+++|++
T Consensus 314 ~~i~~G~~d~~~~~l~~~~~~~~vl~~~~~~~~~~~~~~v~G~~C~s~D~l~~d~~lp~l~~GD~l~~~~~GAY~~~~~s 393 (448)
T 3btn_A 314 YYMNDGVYGSFASKLSEDLNTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPS 393 (448)
T ss_dssp EEESCCTTTTTGGGGC----CCCEECCC-----CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCC
T ss_pred EEEccccccccchhhhccCcceeeeccCCCCCCCceEEEEECCCCCCCCEEeeccccCCCCCCCEEEEcCCCCCchhhcc
Confidence 3444589999999999987654343 221112344689999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEE-ECCeEEEEec
Q 012098 447 TYNLKMRPPEYWV-RSLISIIILP 469 (471)
Q Consensus 447 ~fn~~~~p~~v~v-~~~~~~~~~~ 469 (471)
+||++++|++|++ +++.+++||+
T Consensus 394 ~fN~~~~p~~v~~~~~~~~~~ir~ 417 (448)
T 3btn_A 394 AFNDFQRPAIYFMMSFSDWYEMQD 417 (448)
T ss_dssp GGGTTCCCEEEEEEEHHHHHHHHH
T ss_pred cccCCCCCeEEEEEcCCceeEEEe
Confidence 9999999999986 5556666654
No 15
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=100.00 E-value=3.5e-63 Score=514.19 Aligned_cols=372 Identities=20% Similarity=0.310 Sum_probs=325.3
Q ss_pred CCeEEEcCc-CHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHH
Q 012098 72 DGFLYCEDV-RVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150 (471)
Q Consensus 72 ~g~l~~~~i-~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E 150 (471)
.+.++++++ ++.+|++++ +||+|++|++.|++|+++|++.+++ .+++|++|||+++.|++.+.+.|+||+|+|.+|
T Consensus 35 ~~~l~~~~~~~~~~l~~~~-~tP~~vidl~~l~~N~~~l~~~~~~--~~i~~avKAn~~~~v~~~l~~~G~g~~vas~~E 111 (419)
T 2plj_A 35 SPVLSAEEIHLIEASVEQF-GAPLLLLDCDVIRQQYRALKNALPN--VTLHYALKPLPHPVVVRTLLAEGASFDLATTGE 111 (419)
T ss_dssp -CCCCHHHHHHHHHHHHHH-CSSEEEEEHHHHHHHHHHHHHHSTT--EEEEEESTTCCCHHHHHHHHHHTCEEEECSHHH
T ss_pred CCceeccChHHHHHHHHhc-CCCEEEEeHHHHHHHHHHHHHhCCC--CeEEEEeccCCCHHHHHHHHHcCCcEEEeCHHH
Confidence 456777774 899999997 9999999999999999999999874 689999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccC
Q 012098 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATG 229 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg 229 (471)
++.++++|+++++|+|.|+.|++++++.|+++|+. ++|||++|+++|.+.++ +.+|+||||++.+. .++
T Consensus 112 ~~~~r~~G~~~~~Il~~g~~k~~~~l~~a~~~~v~~~~vds~~el~~l~~~a~----~~~v~lrvd~g~~~------~~~ 181 (419)
T 2plj_A 112 VELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRD----DVELLVRLSFRNSE------AFA 181 (419)
T ss_dssp HHHHHHTTCCGGGEEECCSSCCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTT----TCEEEEEBCC-------------
T ss_pred HHHHHHcCCChhhEEEeCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhcC----CCCEEEEEcCCCCC------CCC
Confidence 99999999998899999999999999999999986 99999999999977542 47999999987431 122
Q ss_pred CCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEecCCCCcC
Q 012098 230 NKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF-EVDYLNIGGGLGID 308 (471)
Q Consensus 230 ~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~l~~ldiGGGl~i~ 308 (471)
..++|||++.+++.++++.+++. ++++.|+|||+||++.+.+.+.++++++.++++.+++.|+ +++++|+|||++++
T Consensus 182 ~~~~RfG~~~~e~~~~~~~~~~~--~l~l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~l~~GGG~~~~ 259 (419)
T 2plj_A 182 DLSKKFGCSPEQALVIIETAKEW--NIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVN 259 (419)
T ss_dssp --CCCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHhC--CCcEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEECCCcCcC
Confidence 34899999999999999988875 7999999999999988888888999999999999998899 99999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCC--cEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcC
Q 012098 309 YYHTGAVLPKPRNLIDTVRELVLSRN--LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAY 386 (471)
Q Consensus 309 y~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~ 386 (471)
|...+ ++++++++.++..+..++ +++++||||++++++++++++|+++|+..++.++++|+||++.+++.+|+.+
T Consensus 260 y~~~~---~~~~~~~~~vr~~i~~y~~~~~~~~EpGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~ 336 (419)
T 2plj_A 260 YTQQV---MPIDQFCAPINEALSLLPETVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDA 336 (419)
T ss_dssp SSSCC---CCHHHHHHHHHHHHTTSCTTCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCC
T ss_pred CCCCC---CCHHHHHHHHHHHHHhCCCCCEEEEcCCHHHhhhcEEEEEEEEEEEeECCeEEEEEcCccccchHHHHhccc
Confidence 96432 468899999999887765 6899999999999999999999999997778999999999999999999875
Q ss_pred c-ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeE
Q 012098 387 Q-HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLIS 464 (471)
Q Consensus 387 ~-~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~ 464 (471)
+ ++.+. .. ..+..+++|+|++||++|++..++.+|++++||+|+|.++|||+++|+++||++++|++|+++++.+
T Consensus 337 ~~~v~~~-~~--~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~~~~~ 412 (419)
T 2plj_A 337 RYPLTTI-KQ--GGELIPSVLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFVA 412 (419)
T ss_dssp CCCEEES-CC--SSCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECCCC-
T ss_pred cceEEec-CC--CCCceeEEEEcCCcCCCCeeeecccCCCCCCCCEEEEeCCCCchhhhhhhhcCCCCCeEEEEecchh
Confidence 4 43332 21 1245789999999999999999999999999999999999999999999999999999999987654
No 16
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=1.2e-62 Score=511.41 Aligned_cols=374 Identities=25% Similarity=0.358 Sum_probs=317.3
Q ss_pred cCcCHHHHHHhc-------CCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHH
Q 012098 78 EDVRVQDVMETV-------EKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNE 150 (471)
Q Consensus 78 ~~i~l~~l~~~~-------~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~E 150 (471)
+++++.+++++. .+||+|+||++.|++|+++|++++++ .+++|++|||+++.|++++.+.|+||+|+|.+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~tP~~vidl~~l~~n~~~~~~~~~~--~~~~~avKAn~~~~v~~~l~~~G~g~~vas~~E 94 (425)
T 1f3t_A 17 EGFNTRDALCKKISMNTCDEGDPFFVADLGDIVRKHETWKKCLPR--VTPFYAVKCNDDWRVLGTLAALGTGFDCASNTE 94 (425)
T ss_dssp CCSSHHHHHHHHCC------CCCEEEEEHHHHHHHHHHHHHHCTT--EEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHH
T ss_pred cCCcHHHHHHHHHHhcccCCCCcEEEEeHHHHHHHHHHHHHhCCC--CeEEEEeeeCCCHHHHHHHHHcCCcEEEeCHHH
Confidence 889999998873 37999999999999999999999874 689999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccC
Q 012098 151 LRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATG 229 (471)
Q Consensus 151 l~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg 229 (471)
++.++++|+++++|+|+|+.|+.++++.|+++|+ .++|||++|+++|.+.+ ++++|+||||++.+. .++
T Consensus 95 ~~~~~~~G~~~~~iv~~g~~k~~~~l~~a~~~gv~~~~vds~~el~~l~~~~----~~~~v~lrid~g~~~------~~~ 164 (425)
T 1f3t_A 95 IQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTH----PKAKMVLRISTDDSL------ARC 164 (425)
T ss_dssp HHHHHHTTCCGGGEEECCSSCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCC-------------
T ss_pred HHHHHHcCCChhhEEEcCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhC----CCCcEEEEEcCCCCC------ccC
Confidence 9999999999999999999999999999999999 59999999999998753 468999999987532 455
Q ss_pred CCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCC
Q 012098 230 NKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDY 309 (471)
Q Consensus 230 ~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y 309 (471)
..++|||++++++.++++.+++. ++++.|+|||+||++.+.+.+.++++++.++++.+++.|++++++|+||||+..+
T Consensus 165 ~~~~RfG~~~~~~~~~~~~~~~~--~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~l~iGGG~~~~~ 242 (425)
T 1f3t_A 165 RLSVKFGAKVEDCRFILEQAKKL--NIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTR 242 (425)
T ss_dssp ---CCSCBCHHHHHHHHHHHHHT--TCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSST
T ss_pred CCCCcCCCCHHHHHHHHHHHHhC--CCeEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCCCC
Confidence 67999999999999999988875 7999999999999998888898888888888988888999999999999997765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-----CcEEEEcccceeecccceEEEEEEEEEeeC--------------ceeEEEE
Q 012098 310 YHTGAVLPKPRNLIDTVRELVLSR-----NLNLIIEPGRSLIANTCCLVNHVTGVKTNG--------------TKNFIVI 370 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~~-----~~~l~~EpGR~lva~ag~lvt~V~~vk~~~--------------~~~~~iv 370 (471)
.. .++++++++.++..+..+ ++++++||||++++++++|+++|+++|+.. ...++.+
T Consensus 243 ~~----~~~~~~~~~~vr~~i~~~~~~~~~~~l~~EpGR~~v~~a~~l~t~V~~vK~~~~g~~~v~g~~~~~~~~~~~~i 318 (425)
T 1f3t_A 243 DA----PLKFEEIAGVINNALEKHFPPDLKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYV 318 (425)
T ss_dssp TS----SSCHHHHHHHHHHHHHHHSCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEE
T ss_pred CC----CCCHHHHHHHHHHHHHHhcCcCCCcEEEEeCCceeeeeeEEEEEEEEEEEeccccccccccccccCcceEEEEE
Confidence 21 246788999998887653 579999999999999999999999999842 1235558
Q ss_pred cCCCCCCcChhhhhcCcceEEc-CCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCC
Q 012098 371 DGSMAELIRPSLYDAYQHIELV-SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYN 449 (471)
Q Consensus 371 D~g~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn 449 (471)
+.||++.+++.+|+.++++.++ .......+..+++|+||+||++|+++.++.||++++||+|+|.++|||+++|+++||
T Consensus 319 ~~G~~d~~~~~l~~~~~~~~vl~~~~~~~~~~~~~~i~G~~C~s~D~~~~d~~lp~~~~GD~v~~~~~GAY~~s~~s~fn 398 (425)
T 1f3t_A 319 NDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFN 398 (425)
T ss_dssp SCCTTTGGGHHHHSCCCCCCEECSCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGG
T ss_pred eccccccchhhhhcccccceeeecCCCCCCCeeEEEEEcCCcCCCCEecccccCCCCCCCCEEEEcCCCCCchhhccccc
Confidence 8889999999999987654333 221122345789999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEE-ECCeEEEEec
Q 012098 450 LKMRPPEYWV-RSLISIIILP 469 (471)
Q Consensus 450 ~~~~p~~v~v-~~~~~~~~~~ 469 (471)
++++|+++++ +++.+.+||.
T Consensus 399 ~~~~p~v~~~~~~~~~~~ir~ 419 (425)
T 1f3t_A 399 GFQSPTIYYVVSGLPDHVVRE 419 (425)
T ss_dssp GCCCCEEEEECCSCSTTHHHH
T ss_pred CCCCCEEEEEeCchHHHHHHh
Confidence 9999998887 4556666553
No 17
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=1.4e-61 Score=495.34 Aligned_cols=359 Identities=21% Similarity=0.360 Sum_probs=311.6
Q ss_pred HHHHHHh---cCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCceEEcCHHHHHHHHHCC
Q 012098 82 VQDVMET---VEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAG 158 (471)
Q Consensus 82 l~~l~~~---~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G 158 (471)
+.+|+++ + +||++++|++.|++|+++|++.++ +.+++|++|||+++.|++.+.+.|+||+|+|.+|+..++++|
T Consensus 5 ~~~l~~~~~~~-~tP~~vidl~~l~~N~~~l~~~~~--~~~~~~~vKan~~~~v~~~l~~~G~g~~vas~~E~~~~~~~G 81 (372)
T 2nva_A 5 VNNILKAHPHQ-TKSFYVSSPKIVEDLIDQWTILFP--RVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIG 81 (372)
T ss_dssp HHHHHHHCTTC-CSEEEEECHHHHHHHHHHHHHHCT--TEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHT
T ss_pred HHHHHHhcCCC-CCCEEEEeHHHHHHHHHHHHHhCC--CCeEEEEeeeCCCHHHHHHHHHcCCcEEEcCHHHHHHHHHcC
Confidence 5688887 6 899999999999999999999986 468999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCC
Q 012098 159 FDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237 (471)
Q Consensus 159 ~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi 237 (471)
+++++|+|.|+.|++++++.++++|+. ++|||++|+++|.+.++ +.+|+||||++.+ +..+++ ++|||+
T Consensus 82 ~~~~~I~~~~~~k~~~~l~~a~~~~v~~~~vds~~~l~~l~~~~~----~~~v~lrv~~~~~---~~~~~~---~~R~G~ 151 (372)
T 2nva_A 82 VSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHP----NCKMILRIRCDDP---NATVQL---GNKFGA 151 (372)
T ss_dssp CCGGGEEECCSCCCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCT----TCEEEEEBCCCCT---TCSBCC---TTTSSB
T ss_pred CCHHHEEECCCCCCHHHHHHHHHCCCCEEEeCCHHHHHHHHHhCC----CCeEEEEEecCCC---CCcccC---CCCCCC
Confidence 998899999999999999999999985 89999999999987642 4799999998753 333333 599999
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLP 317 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~ 317 (471)
+++++.++++.+++. ++++.|+|+|+||++.+.+.+.++++++.++++.+++.|++++++|+|||++++| +.. +
T Consensus 152 ~~~~~~~~~~~~~~~--~l~~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~GGg~~~~~-~~~---~ 225 (372)
T 2nva_A 152 NEDEIRHLLEYAKQL--DIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADI-DEG---E 225 (372)
T ss_dssp CGGGHHHHHHHHHHT--TCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCC-C------
T ss_pred CHHHHHHHHHHHHHc--CCeEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCCCcCC-CCC---C
Confidence 999999999988875 7999999999999998888888899999999999988899999999999999998 221 2
Q ss_pred CHHHHHHHHHHHHhcC--C--cEEEEcccceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhhcCcc-eEEc
Q 012098 318 KPRNLIDTVRELVLSR--N--LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQH-IELV 392 (471)
Q Consensus 318 ~~~~~~~~i~~~~~~~--~--~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~~~~~-~~~~ 392 (471)
+++.+++.++..+..+ + .++++||||++++++++++++|+++|+..++.++++|+||++.+++.+++.++. ..++
T Consensus 226 ~~~~~~~~vr~~i~~y~~~~~~~~~~epGr~~~~~a~~l~t~V~~vk~~~g~~~~~vd~G~~d~~~~~l~~~~~~~~v~~ 305 (372)
T 2nva_A 226 LSTYMSDYINDAIKDFFPEDTVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLL 305 (372)
T ss_dssp CCCHHHHHHHHHHHHHCCCTTCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEES
T ss_pred CHHHHHHHHHHHHHHhcCcCCCEEEEccChhHhhceEEEEEEEEEEEEeCCcEEEEECCCccccchHhhhcccCccceec
Confidence 3466777787776543 2 689999999999999999999999999777899999999999999999987543 1222
Q ss_pred CCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEE
Q 012098 393 SPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWV 459 (471)
Q Consensus 393 ~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v 459 (471)
.......+..+++|+|++||++|++..++.+|++++||+|+|.++|||+++|+++||++++|++|++
T Consensus 306 ~~~~~~g~~~~~~i~G~~C~~~D~~~~d~~lp~~~~GD~v~~~~~GAY~~~~~~~fn~~~~p~~~~~ 372 (372)
T 2nva_A 306 RDVPDDEEYVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp SCCCTTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred cCccCCCCcceEEEEeCCcCCCCEEcccccCCCCCCCCEEEEcCCCCCchhhhccccCCCCCcEEeC
Confidence 2111112347899999999999999999999999999999999999999999999999999999874
No 18
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00 E-value=3.5e-58 Score=491.62 Aligned_cols=392 Identities=22% Similarity=0.275 Sum_probs=318.8
Q ss_pred cc-ccceeeccCCeEEEc-C--cCHHHHHHh-----cCCCcEEEEeHHHHHHHHHHHHHHhcCC--------CceEEEec
Q 012098 62 PV-EHCFSKKADGFLYCE-D--VRVQDVMET-----VEKRPFYLYSKPQITRNVEAYKQALEGL--------NSIIGYAI 124 (471)
Q Consensus 62 ~~-~~~~~~~~~g~l~~~-~--i~l~~l~~~-----~~~tP~~v~d~~~l~~n~~~~~~a~~~~--------~~~i~yav 124 (471)
.| .+||+++ +|+|+|+ + ++|.+|+++ + +||+||+|++.|++|+++|+++|+.. +++++||+
T Consensus 8 ~w~~~~f~~~-~G~l~v~~~~~v~l~~l~~~l~~~~~-gTP~yV~D~d~L~~ni~~l~~af~~a~~~~~y~g~~~i~YAV 85 (619)
T 3nzp_A 8 IWGNENFIIK-NGKVCINYEKKPAIIDIVKELRDDGY-KGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPL 85 (619)
T ss_dssp TTSGGGEEEC-SSSEEESSSSCCBHHHHHHHHHHTTC-CSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEG
T ss_pred CCCCCceEEe-CCEEEEecCCCCCHHHHHHHHHhcCC-CCCEEEEcHHHHHHHHHHHHHHHHHHhhhcccCCCEEEEEEE
Confidence 35 6899999 9999999 6 999999988 6 89999999999999999999999752 46899999
Q ss_pred ccCCcHHHHHHHHHcC----CceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHH---hCC--CEEEeCCHHHHH
Q 012098 125 KANNNYKILEHLRKLG----CGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAA---QEG--VFVNVDSEFDLE 195 (471)
Q Consensus 125 KaN~~~~vl~~l~~~G----~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~---~~g--v~i~vDs~~el~ 195 (471)
|||+++.|++.+.+.| +|+||+|.+|+..++++|+++..|+|+|+ |+.++++.|+ +.| +.++|||++|++
T Consensus 86 KAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~~~~~Iv~nG~-K~~e~I~~Al~a~~~g~~v~ivVDS~~ELe 164 (619)
T 3nzp_A 86 KVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGF-KDRELINIGFIAAEMGHNITLTIEGLNELE 164 (619)
T ss_dssp GGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSCTTSEEEECSC-CCHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred eccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCCCCCEEEeCCC-CCHHHHHHHHhhhhcCCcEEEEECCHHHHH
Confidence 9999999999999987 79999999999999999999889999886 9999999887 445 568999999999
Q ss_pred HHHHHHHHcC-CceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCc-eEEEEEeecCCCCCCHH
Q 012098 196 NIVVASRIAG-KKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL-KLVGAHCHLGSTITKVD 273 (471)
Q Consensus 196 ~l~~~a~~~g-~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l-~l~Glh~H~Gs~~~~~~ 273 (471)
+|.+.+++.| ++++|+||||++ ..+.+.|++||+..+|||++++++.++++.+++.+ .+ ++.|||||+|||+.+.+
T Consensus 165 ~l~~~a~~~g~~~~~V~LRInp~-~~g~~~~~~TGg~~sKFGi~~ee~~~ll~~l~~~~-~L~~l~GLHfHiGSqi~d~~ 242 (619)
T 3nzp_A 165 AIIDIAKERFKPKPNIGLRVRLH-SAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK-LLEQFTMIHFHLGSQITEIH 242 (619)
T ss_dssp HHHHHHTTSCSCCCEEEEEBCCT-TC-------------CCSBCHHHHHHHHHHHHHTT-CTTTEEEEECCCCSCBCCSH
T ss_pred HHHHHHHHcCCCCCEEEEEEecC-CCCCcccccCCCCCccCcCCHHHHHHHHHHHHhCC-CCCceeEEEEEeCCCCCCHH
Confidence 9999998888 899999999997 45677899999899999999999999999999887 67 59999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCEEEecCCCCcCCCCCCC---CCCCHHHHHHHH----HHHHhcC---CcEEEEccc
Q 012098 274 IFRDAAVLMVNYIDKIRAQGF-EVDYLNIGGGLGIDYYHTGA---VLPKPRNLIDTV----RELVLSR---NLNLIIEPG 342 (471)
Q Consensus 274 ~~~~~~~~~~~~~~~l~~~g~-~l~~ldiGGGl~i~y~~~~~---~~~~~~~~~~~i----~~~~~~~---~~~l~~EpG 342 (471)
.++++++++.++++++++.|+ ++++||+|||||++|..++. ..++++++++.| ++.+... +++|++|||
T Consensus 243 ~~~~al~~~~~l~~~L~~~G~~~l~~LDiGGG~gI~Y~~~~~~~s~~~~l~eya~~I~~~l~~~~~~~~~~~p~Ii~EPG 322 (619)
T 3nzp_A 243 PLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESG 322 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCCEEEEESCBCCCCCCSSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecc
Confidence 999999999999999999999 99999999999999976542 234677777665 4444443 469999999
Q ss_pred ceeecccceEEEEEEEEEeeCc----------------------------------------------------------
Q 012098 343 RSLIANTCCLVNHVTGVKTNGT---------------------------------------------------------- 364 (471)
Q Consensus 343 R~lva~ag~lvt~V~~vk~~~~---------------------------------------------------------- 364 (471)
|++|++||+|+++|+++|....
T Consensus 323 R~iva~aGvLvt~Vi~vk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~d~~~~~~~~~~~f~~g~~~l~~r 402 (619)
T 3nzp_A 323 RFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDR 402 (619)
T ss_dssp HHHHGGGEEEEEEEEEEECCCCCGGGSCCCSSCCHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHhhhhEEEEEEEEecCCCcccccCCCccccHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999986320
Q ss_pred ----------------------------------eeEEEEcCCCCCCcChhhhhcC--cceEEcCCCCCCCCceEEEEEc
Q 012098 365 ----------------------------------KNFIVIDGSMAELIRPSLYDAY--QHIELVSPAPQDAEISKFDVVG 408 (471)
Q Consensus 365 ----------------------------------~~~~ivD~g~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~i~G 408 (471)
..++.+|-|.-..+ |..|+.. +++.++.+-. +.|.+++.+.+
T Consensus 403 a~~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~n~S~fqsl-pD~W~i~q~fpi~Pi~rl~-e~p~~~~~l~d 480 (619)
T 3nzp_A 403 SNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM-PDFWGLEQNFPIMPLDRLD-EEPTRSASIWD 480 (619)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------------CCSBEEEESSCTTTTC-HHHHHSSCCCCEEESSCTT-SCCCCBBCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHhhHHheeeehhhccC-cchhhcCcccceeeccccC-CCcceeeEEec
Confidence 13566776654433 3444433 3444444332 45678889999
Q ss_pred cCCCCCceec--cC--CCCCCCC---CCCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 409 PVCESADFLG--KE--RELPTPD---RGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 409 ~tC~~~D~l~--~~--~~lP~~~---~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
-||||.+.+. .. ++||+++ ..-+|.|+.+|||+-.++..||+|+.|.+|.|.
T Consensus 481 iTCDsdg~i~~~~~~~l~lh~~~~~~~~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~v~ 539 (619)
T 3nzp_A 481 ITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHNLFTHPTEAIIS 539 (619)
T ss_dssp SCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEECSCSSSTTTTCCCTTSCCCCEEEEEE
T ss_pred ccccCCCccccCCcccccCCCCCCCCCCcEEEEEccchHHHHHhhccccCCCCCEEEEE
Confidence 9999999843 22 3566765 556799999999999999999999999888885
No 19
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.1e-57 Score=488.03 Aligned_cols=394 Identities=18% Similarity=0.237 Sum_probs=323.2
Q ss_pred Ccc-ccceeeccCCeEEEcC--------cCHHHHHH-----hcCCCcEEEEeHHHHHHHHHHHHHHhcC--------CCc
Q 012098 61 APV-EHCFSKKADGFLYCED--------VRVQDVME-----TVEKRPFYLYSKPQITRNVEAYKQALEG--------LNS 118 (471)
Q Consensus 61 ~~~-~~~~~~~~~g~l~~~~--------i~l~~l~~-----~~~~tP~~v~d~~~l~~n~~~~~~a~~~--------~~~ 118 (471)
..| .+||.++++|+|+|+| +++.+|++ ++ +||+||+|++.|++|+++|+++|+. .++
T Consensus 42 ~~W~~~~f~in~~G~l~v~g~~~~~~~~v~l~eLa~~l~~~~~-gTPlyV~D~d~Lr~ni~~l~~af~~a~~~~~Y~~~~ 120 (666)
T 3nzq_A 42 AWWGNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQ-RLPALFCFPQILQHRLRSINAAFKRARESYGYNGDY 120 (666)
T ss_dssp HHHTTTTEEECTTSSEEECSCTTSTTCCEEHHHHHHHHHHTTC-CSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCE
T ss_pred CCCCCccccCCCCCeEEEeCCCCCCCCCcCHHHHHHHHHhccC-CCCEEEeCHHHHHHHHHHHHHHHHHhHHhhcccCCe
Confidence 345 5689999999999997 89999997 55 9999999999999999999999975 146
Q ss_pred eEEEecccCCcHHHHHHHHHcC--CceEEcCHHHHHHHHHCCCCC-CcEEEeCCCCcHHHHHHHHh---CC--CEEEeCC
Q 012098 119 IIGYAIKANNNYKILEHLRKLG--CGAVLVSGNELRLALRAGFDP-TKCIFNGNGKLLEDLVLAAQ---EG--VFVNVDS 190 (471)
Q Consensus 119 ~i~yavKaN~~~~vl~~l~~~G--~g~~vaS~~El~~a~~~G~~~-~~Ii~~g~~k~~~~l~~a~~---~g--v~i~vDs 190 (471)
+++||+|||+++.|++.+.+.| +|+||+|.+|+..++++|+++ ..|+++| .|+.++|+.|++ .| +.++|||
T Consensus 121 ~i~YAvKAN~~~~Vl~~l~~~G~~~G~dvaS~gEl~~al~aG~~p~~iIv~nG-~K~~eeI~~Al~~~~~G~~v~ivVDS 199 (666)
T 3nzq_A 121 FLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNG-YKDREYIRLALIGEKMGHKVYLVIEK 199 (666)
T ss_dssp EEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHTTSCCEEEECS-CCCHHHHHHHHHHHHTTCEEEEEECS
T ss_pred EEEEEEeeCChHHHHHHHHHcCCCceEEEeCHHHHHHHHHcCCCCCcEEEEcC-CCCHHHHHHHHHhhccCCCEEEEECC
Confidence 8999999999999999999999 899999999999999999988 5677777 599999999985 45 4689999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCce-EEEEEeecCCCC
Q 012098 191 EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK-LVGAHCHLGSTI 269 (471)
Q Consensus 191 ~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~-l~Glh~H~Gs~~ 269 (471)
++|+++|.+++++.|++++|+|||||+.+. .+.|+.||+..+|||++++++.++++.+++.+ .++ +.|||||+|||+
T Consensus 200 ~~ELe~L~~~A~~~g~~~~V~LRVnp~~~~-~~~~i~TG~~~SKFGi~~~e~~~ll~~l~~~~-~L~~l~GLHfHiGSqi 277 (666)
T 3nzq_A 200 MSEIAIVLDEAERLNVVPRLGVRARLASQG-SGKWQSSGGEKSKFGLAATQVLQLVETLREAG-RLDSLQLLHFHLGSQM 277 (666)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEBCCSSSC-SSTTCSSSSSCCCSCBCHHHHHHHHHHHHHTT-CTTTEEEEECCCCSSC
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEecCCC-CcCccccCCCCCcCcCCHHHHHHHHHHHHhCC-CCCCeEEEEEECCCCC
Confidence 999999999999999999999999998764 56799999889999999999999999999987 786 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC-----CCCHHHHHHHHHH----HHhcC---CcEE
Q 012098 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-----LPKPRNLIDTVRE----LVLSR---NLNL 337 (471)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~-----~~~~~~~~~~i~~----~~~~~---~~~l 337 (471)
.+.+.++++++++.++++++++.|+++++||+|||||++|.+++.. .++++++++.|.+ .+... .++|
T Consensus 278 ~d~~~~~~ai~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~p~I 357 (666)
T 3nzq_A 278 ANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTV 357 (666)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCCCEEECCSCCCCCSSSSCSSSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHHcCCCCcEE
Confidence 9999999999999999999998899999999999999999754432 1467777766544 44433 4799
Q ss_pred EEcccceeecccceEEEEEEEEEeeCce----------------------------------------------------
Q 012098 338 IIEPGRSLIANTCCLVNHVTGVKTNGTK---------------------------------------------------- 365 (471)
Q Consensus 338 ~~EpGR~lva~ag~lvt~V~~vk~~~~~---------------------------------------------------- 365 (471)
++||||++|++||+++++|+++|.....
T Consensus 358 i~EPGRaiVa~aGvLvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~ 437 (666)
T 3nzq_A 358 ITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSS 437 (666)
T ss_dssp EECCHHHHHTTSEEEEEEEEEEECCCCCCCCCCCTTSCHHHHHHHHHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCHHHHHhhhEEEEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999874211
Q ss_pred ---------------------------------------------eEEEEcCCCCCCcChhhhhc--CcceEEcCCCCCC
Q 012098 366 ---------------------------------------------NFIVIDGSMAELIRPSLYDA--YQHIELVSPAPQD 398 (471)
Q Consensus 366 ---------------------------------------------~~~ivD~g~~~~~~~~l~~~--~~~~~~~~~~~~~ 398 (471)
.++.+|-|.-..+ |..|+. .+++.++.+- .+
T Consensus 438 g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqsl-PD~W~i~q~fpi~Pi~rl-~e 515 (666)
T 3nzq_A 438 GIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSM-PDAWGIDQLFPVLPLEGL-DQ 515 (666)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHCCTTSGGGHHHHHHHHHTTCEEEEESSCHHHHC-THHHHSCCCCCEEESSCT-TS
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHhHHheeehhhhccC-cchhhhccccceeecccc-CC
Confidence 0222332221111 112322 2233333332 24
Q ss_pred CCceEEEEEccCCCCC----ceec-----cCCCCCCCCC--CCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 399 AEISKFDVVGPVCESA----DFLG-----KERELPTPDR--GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 399 ~~~~~~~i~G~tC~~~----D~l~-----~~~~lP~~~~--GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
.|.+++.+.+-||||. +++. ..++||+++. .-+|.|+.+|||+-.++..||+|+.|.+|.|.
T Consensus 516 ~p~~~~~l~diTCDsdG~i~~fi~~~~~~~~l~lh~~~~~e~y~lg~Fl~GAYQe~lg~~HnLfg~~~~v~v~ 588 (666)
T 3nzq_A 516 VPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDVF 588 (666)
T ss_dssp CCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEECSCCSSCGGGCCCTTSCCCCEEEEEE
T ss_pred CcceeeEEeccccCCCCchhhccCCCCccccccccccCCCCccEEEEEecchhhHHhccccccCCCCCEEEEE
Confidence 5788999999999997 3442 1246677644 45799999999999999999999999998885
No 20
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=9.8e-57 Score=481.47 Aligned_cols=393 Identities=20% Similarity=0.278 Sum_probs=319.8
Q ss_pred cc-ccceeeccCCeEEEcC-------cCHHHHH-----HhcCCCcEEEEeHHHHHHHHHHHHHHhcCC--------CceE
Q 012098 62 PV-EHCFSKKADGFLYCED-------VRVQDVM-----ETVEKRPFYLYSKPQITRNVEAYKQALEGL--------NSII 120 (471)
Q Consensus 62 ~~-~~~~~~~~~g~l~~~~-------i~l~~l~-----~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~--------~~~i 120 (471)
.| .+||.++++|+|+|++ +++.+|+ +++ +||+||+|++.|++|+++|+++|+.. ++++
T Consensus 22 ~Wg~~yf~in~~G~l~v~~~~~~~~~v~l~eLa~~l~~~~~-gTPlyV~D~d~L~~ni~~l~~af~~a~~~~~y~~~~~i 100 (648)
T 3n2o_A 22 YWSQGFYGIDDQGEMYVSPRSDNAHQIQLSKIVKQLEERQL-NVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLL 100 (648)
T ss_dssp HHHTTSEEECTTSCEEECCSTTCCCCEEHHHHHHHHHHTTC-CSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred CCCcccccCCCCCcEEEeCCCCCCCccCHHHHHHHHhhcCC-CCCEEEEeHHHHHHHHHHHHHHHHHHHHhhcccCCeEE
Confidence 36 5799999999999998 8999999 455 99999999999999999999999752 4689
Q ss_pred EEecccCCcHHHHHHHHHc-------CCceEEcCHHHHHHHHHCCCCCC-cEEEeCCCCcHHHHHHHHh---CCC--EEE
Q 012098 121 GYAIKANNNYKILEHLRKL-------GCGAVLVSGNELRLALRAGFDPT-KCIFNGNGKLLEDLVLAAQ---EGV--FVN 187 (471)
Q Consensus 121 ~yavKaN~~~~vl~~l~~~-------G~g~~vaS~~El~~a~~~G~~~~-~Ii~~g~~k~~~~l~~a~~---~gv--~i~ 187 (471)
+||+|||+++.|++.+.+. |+|+||+|.+|+..++++|++++ .|+|+|+ |+.++|+.|++ .|+ .++
T Consensus 101 ~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~~~e~iIv~nG~-K~~eeI~~Al~~~~~G~~v~Iv 179 (648)
T 3n2o_A 101 VYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQHASSVIVCNGY-KDREYIRLALIGEKLGHKVFIV 179 (648)
T ss_dssp CEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTSSSCCEEEECSC-CCHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCCCCCcEEEecCC-CCHHHHHHHHHhhcCCCCEEEE
Confidence 9999999999999999988 58999999999999999999986 4778775 99999999974 564 589
Q ss_pred eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCce-EEEEEeecC
Q 012098 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK-LVGAHCHLG 266 (471)
Q Consensus 188 vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~-l~Glh~H~G 266 (471)
|||++|+++|.+.+++.|++++|+||||++.+. .+.|++||+..+|||++++++.++++.+++.+ .+. +.|||||+|
T Consensus 180 VDS~~EL~~I~~~A~~~g~~~~V~LRInp~~~~-~~~~i~TGg~~SKFGi~~~e~~~ll~~l~~~~-~L~~l~GLHfHiG 257 (648)
T 3n2o_A 180 LEKMSELDLVLREAKSLGVTPRLGIRIRLASQG-AGKWQASGGEKSKFGLSASQVLNVISRLKKEN-QLDTLQLVHFHLG 257 (648)
T ss_dssp ECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTS-TTTTCSSSSCCCCCCBCHHHHHHHHHHHHHTT-CGGGEEEEECCCC
T ss_pred ECCHHHHHHHHHHHHhcCCCcEEEEEEECCCCC-CCCccccCCCCCcCcCCHHHHHHHHHHHHhCC-CCCceEEEEEECC
Confidence 999999999999999999999999999998654 46789999889999999999999999999887 786 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC-----CCCHHHHHHHHH----HHHhcC---C
Q 012098 267 STITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV-----LPKPRNLIDTVR----ELVLSR---N 334 (471)
Q Consensus 267 s~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~-----~~~~~~~~~~i~----~~~~~~---~ 334 (471)
||+.+.+.++++++++.++++++++.|+++++||+|||||++|.+++.. .++++++++.|. +.+..+ +
T Consensus 258 Sqi~d~~~~~~al~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~~~~s~~~~leeya~~I~~~l~~~~~~~~~~~ 337 (648)
T 3n2o_A 258 SQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPM 337 (648)
T ss_dssp SSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCTTSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcCCCcCCccccccccCCCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999754432 146777776654 444432 4
Q ss_pred cEEEEcccceeecccceEEEEEEEEEeeCcee----------------------------------E-------------
Q 012098 335 LNLIIEPGRSLIANTCCLVNHVTGVKTNGTKN----------------------------------F------------- 367 (471)
Q Consensus 335 ~~l~~EpGR~lva~ag~lvt~V~~vk~~~~~~----------------------------------~------------- 367 (471)
++|++||||++|++||+++++|+++|...... |
T Consensus 338 p~Ii~EPGR~iVa~aGvLvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~ 417 (648)
T 3n2o_A 338 PVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQ 417 (648)
T ss_dssp CEEEECCHHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCHHHHHhhheEEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999742110 0
Q ss_pred --------------------------------------------------EEEcCCCCCCcChhhhhc--CcceEEcCCC
Q 012098 368 --------------------------------------------------IVIDGSMAELIRPSLYDA--YQHIELVSPA 395 (471)
Q Consensus 368 --------------------------------------------------~ivD~g~~~~~~~~l~~~--~~~~~~~~~~ 395 (471)
+.+|-|.-..+ |..|+. .+++.++.+-
T Consensus 418 f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqsl-pD~W~i~q~fpi~Pi~rl 496 (648)
T 3n2o_A 418 FATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSLFQSL-PDSWGIDQVFPVLPLSGL 496 (648)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHTCEEEEESSCHHHHC-HHHHHHCCCCCEEESSCG
T ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhccccCcHHHHHHHHHHhHHheeehhhhccC-cchhhhcCccceeecccc
Confidence 11111100000 111211 1233333322
Q ss_pred CCCCCceEEEEEccCCCCC----ceecc-----CCCCCCCCC--CCEEEEcCCCccccccCCCCCCCCCCcEEEEE
Q 012098 396 PQDAEISKFDVVGPVCESA----DFLGK-----ERELPTPDR--GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460 (471)
Q Consensus 396 ~~~~~~~~~~i~G~tC~~~----D~l~~-----~~~lP~~~~--GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~ 460 (471)
.+.|.+++.+.+-||||. +++.. .++||+++. --+|.|+.+|||+-.++..||+|+.|.+|.|.
T Consensus 497 -~e~p~~~~~l~diTCDsdG~i~~f~~~~~~~~~l~lh~~~~~e~y~lg~fl~GAYQe~lg~~HnLfg~~~~v~v~ 571 (648)
T 3n2o_A 497 -QNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVN 571 (648)
T ss_dssp -GGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSCCEEEEESCCSSHHHHCCCGGGCCCCEEEEEE
T ss_pred -CCCcceeeEEeccccCCCCchhhccCCCCCccceecCcCCCCCccEEEEEecchhhHHhccccccCCCCCEEEEE
Confidence 245788999999999997 33321 245677654 45799999999999999999999999998886
No 21
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.9e-39 Score=329.77 Aligned_cols=308 Identities=16% Similarity=0.134 Sum_probs=250.0
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
..|++++|+++|++|++.+++.++ +.+++|++|| |.++.|++.+.++|+ +|+|+|.+|+..++++|+++ +|+
T Consensus 10 ~~~~~~idl~~i~~N~~~l~~~~~--~~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~~-~Il 86 (384)
T 1xfc_A 10 LLAEAMVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITA-PVL 86 (384)
T ss_dssp -CEEEEEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCS-CEE
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCC--CCEEEEEEeeCCcCCChHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCC-CEE
Confidence 578899999999999999999987 5689999999 888999999999997 89999999999999999976 588
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH---hHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN---EKL 242 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~---~el 242 (471)
+.|+ ++.++++.+++.++.++|||+++++.|.+.+++.+++++|+||||++ ++|||+++ +++
T Consensus 87 ~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdtG--------------~~R~G~~~~~~~~~ 151 (384)
T 1xfc_A 87 AWLH-PPGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTG--------------LNRNGVGPAQFPAM 151 (384)
T ss_dssp ECCC-CTTCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSS--------------CCSSSBCTTTHHHH
T ss_pred EEcC-CCHHHHHHHHHcCcEEEECCHHHHHHHHHHHHhcCCceEEEEEEECC--------------CCccCCCcCcHHHH
Confidence 8888 77788999999999999999999999999998889999999999853 79999998 899
Q ss_pred HHHHHHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 243 QWFLDAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 243 ~~~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
.++++.+++.+ ++++.|+|+|+|++.. +...++++++.+.++.+.+++.|++++++|+|||.++.|... ..
T Consensus 152 ~~~~~~i~~~~-~l~l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~g~s~~~~~~~~-~~------ 223 (384)
T 1xfc_A 152 LTALRQAMAED-AVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPD-LT------ 223 (384)
T ss_dssp HHHHHHHHHTT-SEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGG-GC------
T ss_pred HHHHHHHHhCC-CCcEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCHHHhcCcc-cc------
Confidence 99999999888 8999999999999863 334567788888889988988899999999999998876421 10
Q ss_pred HHHHHHHHHhcCCc----EEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhh
Q 012098 322 LIDTVRELVLSRNL----NLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSL 382 (471)
Q Consensus 322 ~~~~i~~~~~~~~~----~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l 382 (471)
.+.+|.....++. .+ +| +.++++++++++|+.+|+.. +..++++|+||++.+++.+
T Consensus 224 -~~~vR~G~~lyg~~~~~~~-~e---~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l 298 (384)
T 1xfc_A 224 -FDLVRPGIAVYGLSPVPAL-GD---MGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSL 298 (384)
T ss_dssp -CSEECCSGGGGTCCSSGGG-CC---TTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGG
T ss_pred -CCEEccCHHhHCCCccccc-cc---CCCceEEEEEEEEEEEEEcCCCCEEEeCCEEECCCCCEEEEEeeccccCccccc
Confidence 1112221111221 11 23 45899999999999999731 2568899999999988776
Q ss_pred hhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CC-CCCCCCEEEEcCCCcc
Q 012098 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LP-TPDRGAGLVVHDAGAY 440 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP-~~~~GD~l~~~~~GAY 440 (471)
.+. .++ .+. .++++|+|++|| |++..++. +| ++++||+|+|.++|+|
T Consensus 299 ~~~-~~v-~~~-------g~~~~ivG~vcm--D~~~~d~~~~p~~~~~GD~v~l~g~~~~ 347 (384)
T 1xfc_A 299 GGR-LEV-LIN-------GRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPGIR 347 (384)
T ss_dssp TTT-CEE-EET-------TEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSSTT
T ss_pred CCC-CeE-EEC-------CEEeeEeeEecc--ceEEEEccCCCCCCCCCCEEEEEeCCCC
Confidence 433 222 221 357899999998 99999985 89 8999999999999987
No 22
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=100.00 E-value=7.7e-38 Score=321.53 Aligned_cols=336 Identities=15% Similarity=0.158 Sum_probs=268.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccC----CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN----NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN----~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
.+|++++|+++|++|++.+++.++. +.+++|++||| ..+.|++.+.++|+ +|+|+|.+|+..++++|++++ |+
T Consensus 10 ~~~~~~idl~ai~~N~~~l~~~~~~-~~~l~~vvKanaYGhg~~~v~~~l~~~G~~~f~vas~~Ea~~lr~~G~~~~-il 87 (391)
T 2vd8_A 10 RDTWVEVDLDAIYNNVTHIXEFIPS-DVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAP-IL 87 (391)
T ss_dssp SSCEEEEEHHHHHHHHHHHHHHSCT-TCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSC-EE
T ss_pred CCeEEEEcHHHHHHHHHHHHHhcCC-CCEEEEEEEecccCCChHHHHHHHHHcCCCeEEeecHHHHHHHHhcCCCCc-eE
Confidence 5799999999999999999999854 57899999995 67999999999997 899999999999999999765 55
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQW 244 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~~ 244 (471)
+.|+ ++.++++.++++++.++|||+++++.|.+ +++.+++++|+|+||+ | ++|||+++ +++.+
T Consensus 88 ~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~-a~~~~~~~~V~lkvdt------------G--m~R~G~~~~~e~~~ 151 (391)
T 2vd8_A 88 VLGP-SPPRDINVAAENDVALTVFQXEWVDEAIX-LWDGSSTMXYHINFDS------------G--MGRIGIRERXELXG 151 (391)
T ss_dssp ECSC-CCGGGHHHHHHTTEEEECCCHHHHHHHHH-HCCSSCCEEEEEEBCS------------S--CCSSSBCCHHHHHH
T ss_pred EecC-CChHHHHHHHHCCeEEEEcCHHHHHHHHH-HHhcCCceEEEEEEeC------------C--CCCCCCCchhhHHH
Confidence 5676 77889999999999999999999999998 7777888999999974 3 79999985 89999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
+++.+++++ ++++.|+|+|++++.. +...++.+++.+.++.+.+++.|+++.++++||+.++.|... .. .
T Consensus 152 ~~~~i~~~~-~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~gnS~g~~~~~~-~~-------~ 222 (391)
T 2vd8_A 152 FLXSLEGAP-FLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQG-IT-------F 222 (391)
T ss_dssp HHHHHTTCT-TEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTT-CC-------T
T ss_pred HHHHHhhcC-CceEEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccCCcceEEecchhHhhcCcc-cC-------C
Confidence 999998888 8999999999999864 333466778888888888888898889999999998876431 11 1
Q ss_pred HHHHHHHhcCCcE---EEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhc
Q 012098 324 DTVRELVLSRNLN---LIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDA 385 (471)
Q Consensus 324 ~~i~~~~~~~~~~---l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~ 385 (471)
+.+|.....++.. -..||||+.+.++++++++|+.+|+.. +..+++++.||++.+++.+++.
T Consensus 223 ~~vR~G~~lyg~~p~~~~~~~g~~~l~pa~~l~~~V~~vk~~~~G~~v~yg~~~~~~~~~~~a~v~~GyaDg~~r~l~~~ 302 (391)
T 2vd8_A 223 NAVRIGIAMYGLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQGF 302 (391)
T ss_dssp TEEEESTTTTTCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC
T ss_pred CEEehhHHhcCCCCccccccccccccceeEEEEEEeeEEEEcCCCCeEeeCCEEEcCCCcEEEEEeeeeecccccccCCC
Confidence 1222222223321 124788999999999999999999642 3458899999999998888763
Q ss_pred CcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCC-ccccccCC--------------CCCC
Q 012098 386 YQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAG-AYCMSMAS--------------TYNL 450 (471)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~G-AY~~~~~~--------------~fn~ 450 (471)
++ ++. .+++.|+|++|| |++..|+ +|++++||+|+|.+.+ +|+.+... .+
T Consensus 303 --~v-~v~-------g~~~~ivG~vcm--D~~~vd~-~~~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~~~-- 367 (391)
T 2vd8_A 303 --EV-LVN-------GXRVPIVGRVTM--DQFMIHL-PCEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI-- 367 (391)
T ss_dssp --EE-EET-------TEEEEEESCCCS--SCEEEEE-SSCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS--
T ss_pred --eE-EEC-------Ceecceecceec--ceeEeec-CCCCCCCCEEEEECCCCCCCCCHHHHHHHhCCcceEEEccC--
Confidence 32 221 357899999997 9999998 7899999999998854 56554321 22
Q ss_pred CCCCcEEEEECCeEEEEe
Q 012098 451 KMRPPEYWVRSLISIIIL 468 (471)
Q Consensus 451 ~~~p~~v~v~~~~~~~~~ 468 (471)
-++-+.+|+.+++...++
T Consensus 368 ~~rv~r~y~~~~~~~~~~ 385 (391)
T 2vd8_A 368 SFRVPRIFIRNGXVVEVI 385 (391)
T ss_dssp CTTSCEEEEETTEEEEEE
T ss_pred CCCcceEEEcCCceeeec
Confidence 256778888777655543
No 23
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.3e-38 Score=323.89 Aligned_cols=305 Identities=15% Similarity=0.126 Sum_probs=242.4
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
.+|++++|+++|++|++++++.+++ .+++|++|| |+++.|++.+.++|+ +|+|+|.+|++.++++|++++ |+
T Consensus 2 ~~~~~~idl~~l~~N~~~~~~~~~~--~~l~~vvKanaYG~~~~~i~~~l~~~G~~~~~vas~~E~~~~~~~G~~~~-il 78 (361)
T 2dy3_A 2 NLLTTKIDLDAIAHNTRVLKQMAGP--AKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQE-VL 78 (361)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTT--SEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSE-EE
T ss_pred CceEEEEeHHHHHHHHHHHHHhCCC--cEEEEEEEecCcCCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhcCCCCC-EE
Confidence 3689999999999999999999976 689999999 688999999999996 999999999999999999864 66
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~ 245 (471)
+.|+ ++.++++.+++.++.++|||+++++.|.+.+.+ +++|+||||++ ++|||++++++.++
T Consensus 79 ~~~~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~---~~~v~l~vdtG--------------~~R~G~~~~~~~~~ 140 (361)
T 2dy3_A 79 CWIW-TPEQDFRAAIDRNIDLAVISPAHAKALIETDAE---HIRVSIKIDSG--------------LHRSGVDEQEWEGV 140 (361)
T ss_dssp ECCC-CTTSCHHHHHTTTCEEEECSHHHHHHHHTSCCS---CEEEEEEBCCS--------------SCSSSBCHHHHHHH
T ss_pred EECC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHhCcc---CCEEEEEEeCC--------------CCCCCCCHHHHHHH
Confidence 6676 677889999999999999999999999876543 68899998743 79999999999999
Q ss_pred HHHHHcCCCCceEEEEEeecCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH
Q 012098 246 LDAVKAHPNELKLVGAHCHLGSTITKV-DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID 324 (471)
Q Consensus 246 l~~l~~~~~~l~l~Glh~H~Gs~~~~~-~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~ 324 (471)
++.+++.+ ++++.|+|+|+|++.... ..++++++.+.++.+.+++.|++++++|+||+.++.|... .. .+
T Consensus 141 ~~~~~~~~-~l~~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~s~~~~~~~~-~~-------~~ 211 (361)
T 2dy3_A 141 FSALAAAP-HIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSD-LH-------ME 211 (361)
T ss_dssp HHHHHTCT-TEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGG-GC-------TT
T ss_pred HHHHHhCC-CCCEEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEeCCHHHhcCcc-cC-------CC
Confidence 99999888 899999999999986422 2367788888888888888899999999999988766421 10 11
Q ss_pred HHHHHHhcCCcE--EEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCc
Q 012098 325 TVRELVLSRNLN--LIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQ 387 (471)
Q Consensus 325 ~i~~~~~~~~~~--l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~ 387 (471)
.+|.....++.. ..+||| ++++++++++|+.+|+.. +..+++++.||++.+++.+++..
T Consensus 212 ~vR~G~~l~g~~~~~~~e~~---~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l~~~~- 287 (361)
T 2dy3_A 212 MVRPGLAFYGLEPVAGLEHG---LKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHAQGKF- 287 (361)
T ss_dssp EECCCGGGGTCCSSTTCCCS---CCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGGTTTC-
T ss_pred EEecchHhhCCCcccccCCC---ceeEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCCEEEEEeeccccCcCcccCCCc-
Confidence 122211112210 012666 899999999999999732 35688999999999988887642
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CC-CCCCCCEEEEcCCCc
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LP-TPDRGAGLVVHDAGA 439 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP-~~~~GD~l~~~~~GA 439 (471)
++ ++. .+.++|+|++|+ |++..++. +| ++++||+|+|.+.+.
T Consensus 288 ~v-~i~-------g~~~~ivG~vcm--D~~~~d~~~~~~~~~~GD~v~~~g~~~ 331 (361)
T 2dy3_A 288 SV-TID-------GLDYPQVGRVCM--DQFVISLGDNPHGVEAGAKAVIFGENG 331 (361)
T ss_dssp EE-EET-------TEEEEEESCCCS--SCEEEEEETCTTCCCTTCEEEEESTTS
T ss_pred eE-EEC-------CEEeeEeeEEec--ccEEEEccCCCCCCCCCCEEEEEcCCC
Confidence 22 221 357899999996 99999986 89 899999999998763
No 24
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=100.00 E-value=1.5e-37 Score=318.95 Aligned_cols=310 Identities=14% Similarity=0.091 Sum_probs=249.1
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
.+|+++||+++|++|++.+++.++ +.+++|++|| +..+.|++.+.+.|+ +|+|+|.+|+..++++|++++ |+
T Consensus 6 ~~p~~~idl~~i~~N~~~l~~~~~--~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~f~vas~~Ea~~~~~~G~~~~-il 82 (386)
T 1vfs_A 6 TRVYAEIDLDAVRANVRALRARAP--RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGR-IM 82 (386)
T ss_dssp SSEEEEEEHHHHHHHHHHHHTTST--TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSE-EE
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCC--CcEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhcCCCCC-EE
Confidence 689999999999999999999884 4689999999 678999999999997 799999999999999999764 55
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~ 245 (471)
+.|+ ...++++.+++.++.++|||+++++.|.+.+++.+++++|+|+||+ | ++|||++++++.++
T Consensus 83 ~~~~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vdt------------G--~~R~G~~~~e~~~~ 147 (386)
T 1vfs_A 83 CWLW-TPGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKADT------------G--LGRNGCQPADWAEL 147 (386)
T ss_dssp ECCC-CTTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCS------------S--CCSSSBCHHHHHHH
T ss_pred EECC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhcCCceEEEEEEcC------------C--CCCCCCCHhHHHHH
Confidence 5565 3457899999999999999999999999998888999999999984 3 79999999887555
Q ss_pred ---HHHHHcCCCCceEEEEEeecCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 246 ---LDAVKAHPNELKLVGAHCHLGSTITKV-DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 246 ---l~~l~~~~~~l~l~Glh~H~Gs~~~~~-~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
++.+++.+ ++++.|+|+|++++.... ...+++++.+.++.+.+++.|++++++++||+.++.|.... .
T Consensus 148 ~~~~~~i~~~~-~l~l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~g~~~~~~~~g~s~g~~~~~~~-~------ 219 (386)
T 1vfs_A 148 VGAAVAAQAEG-TVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPET-H------ 219 (386)
T ss_dssp HHHHHHHHHTT-SEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGG-C------
T ss_pred HHHHHHHHhCC-CceEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEecCCHHHHcCccc-c------
Confidence 88888888 899999999999986422 34577888888888888888999999999999987653211 0
Q ss_pred HHHHHHHHHhcCCc----EEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhh
Q 012098 322 LIDTVRELVLSRNL----NLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSL 382 (471)
Q Consensus 322 ~~~~i~~~~~~~~~----~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l 382 (471)
.+.+|.....++. .+..| +|+.+.++++++++|+.+|+.. +..+++++.||++.+++.+
T Consensus 220 -~~~vR~G~~lyg~~p~~~~~~~-~~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l 297 (386)
T 1vfs_A 220 -FDLVRTGLAVYGVSPSPELGTP-AQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNA 297 (386)
T ss_dssp -SSEEEECGGGGTCCSCGGGCCT-TTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGG
T ss_pred -CCEEEeChhhhCCCcccccccc-cccCCceEEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecccccCccccc
Confidence 1112221112221 11122 4888999999999999999742 2568899999999988877
Q ss_pred hhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCC-CCCEEEEcCCCcc
Q 012098 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPD-RGAGLVVHDAGAY 440 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~-~GD~l~~~~~GAY 440 (471)
++. .++ ++. .++++|+|++|+ |+++.|+.+ +++ +||+|+|.++|+|
T Consensus 298 ~~~-~~v-~i~-------g~~~~ivG~vcm--D~~~~dv~~-~~~~~GD~v~l~g~~~~ 344 (386)
T 1vfs_A 298 SGR-GPV-LVA-------GKIRRAAGRIAM--DQFVVDLGE-DLAEAGDEAVILGDAER 344 (386)
T ss_dssp TTT-CEE-EET-------TEEEEBCSCCCS--SCEEEEEET-CCCCTTCEEEEECCGGG
T ss_pred CCC-CEE-EEC-------CEEeeEeeEeec--CcEEEEccC-CCCCCCCEEEEEeCCCC
Confidence 653 222 221 357899999997 999999888 889 9999999999988
No 25
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=100.00 E-value=1e-36 Score=312.79 Aligned_cols=307 Identities=16% Similarity=0.124 Sum_probs=244.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCc-eEEEeccc----CCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNS-IIGYAIKA----NNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKC 164 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~-~i~yavKa----N~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~I 164 (471)
.+|.++||+++|++|++.+++.++ +. +++|++|| |..+.|++.+.++|+ +|+|+|.+|+..++++|+++ +|
T Consensus 6 ~~~~~~idl~ai~~N~~~l~~~~~--~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~~~f~vas~~Ea~~lr~aG~~~-~I 82 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLP--DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEA-PI 82 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSC--TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCS-CE
T ss_pred CceEEEEcHHHHHHHHHHHHHhCC--CCCEEEEEEEecccCCCHHHHHHHHHHCCCCEEEEeeHHHHHHHHhCCcCC-CE
Confidence 368899999999999999999885 56 89999999 778999999999997 89999999999999999975 57
Q ss_pred EEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHH
Q 012098 165 IFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQ 243 (471)
Q Consensus 165 i~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~ 243 (471)
++.|+ ++.++++.++++++.++|||+++++.|.+.+ +.+++++|+||||++ ++|||+++ +++.
T Consensus 83 l~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a-~~~~~~~V~lkvdtG--------------m~R~G~~~~~e~~ 146 (388)
T 1bd0_A 83 LVLGA-SRPADAALAAQQRIALTVFRSDWLEEASALY-SGPFPIHFHLKMDTG--------------MGRLGVKDEEETK 146 (388)
T ss_dssp EECSC-CCGGGHHHHHHTTEEEEECCHHHHHHHHHHC-CCSSCEEEEEEBCSS--------------SCSSSBCSHHHHH
T ss_pred EEECC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHh-ccCCCeEEEEEEcCC--------------CCcCCCCCHHHHH
Confidence 77788 7888999999999999999999999999888 778889999999843 89999986 8999
Q ss_pred HHHHHHHcCCCCceEEEEEeecCCCCCCHH-HHHHHHHHHHHHHHHHHHc-CCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 244 WFLDAVKAHPNELKLVGAHCHLGSTITKVD-IFRDAAVLMVNYIDKIRAQ-GFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 244 ~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~-~~~~~~~~~~~~~~~l~~~-g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
++++.+++++ ++++.|+|+|++++....+ ...+++ +.+.++++. |+++.++++||+.++.|... ..
T Consensus 147 ~~~~~i~~~~-~l~l~Gl~tH~~~~~~~~~~~~~~q~----~~f~~l~~~~g~~~~~~~~g~S~~~~~~~~-~~------ 214 (388)
T 1bd0_A 147 RIVALIERHP-HFVLEGLYTHFATADEVNTDYFSYQY----TRFLHMLEWLPSRPPLVHCANSAASLRFPD-RT------ 214 (388)
T ss_dssp HHHHHHHHST-TEEEEEEECCCSSTTSSCCHHHHHHH----HHHHHHHTTCSSCCSEEECCCHHHHHHCTT-SC------
T ss_pred HHHHHHHhCC-CceEEEEEEccCCCCCCCcHHHHHHH----HHHHHHHhhcCCCCCeEEecCCHHHhcCcc-cC------
Confidence 9999998888 8999999999999864222 222222 233346666 88889999999998876421 11
Q ss_pred HHHHHHHHHhcCCc----EEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhh
Q 012098 322 LIDTVRELVLSRNL----NLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSL 382 (471)
Q Consensus 322 ~~~~i~~~~~~~~~----~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l 382 (471)
.+.+|.....++. .+..|| |+.+.++++++++|+.+|+.. +..+++++.||++.+++.+
T Consensus 215 -~~~vR~G~~lyG~~p~~~~~~~~-~~~l~pa~~l~~~V~~vk~~~~G~~v~Yg~~~~~~~~~~~a~v~~GyaDg~~r~l 292 (388)
T 1bd0_A 215 -FNMVRFGIAMYGLAPSPGIKPLL-PYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRL 292 (388)
T ss_dssp -TTEEEECGGGGTCCSCGGGGGGC-SSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCGGG
T ss_pred -CCEEehhHHHHCCCccccccccc-ccCcceEEEEEEEEEEEEEcCCCCeEecCCeEECCCCcEEEEEeeeeccCccccc
Confidence 1122322222332 112244 788999999999999999742 2457889999999998888
Q ss_pred hhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCC-ccccc
Q 012098 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAG-AYCMS 443 (471)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~G-AY~~~ 443 (471)
++. ++ ++. .++++|+|++|+ |++..|+. |++++||+|+|.+.+ +|+.+
T Consensus 293 ~~~--~v-~v~-------g~~~~ivG~vcm--D~~~vdv~-~~~~~GD~v~l~g~~~~~~~~ 341 (388)
T 1bd0_A 293 QHF--HV-LVD-------GQKAPIVGRICM--DQCMIRLP-GPLPVGTKVTLIGRQGDEVIS 341 (388)
T ss_dssp GGC--EE-EET-------TEEEEEESCCCS--SCEEEECS-SCCCTTCEEEEEEEETTEEEC
T ss_pred cCC--cE-eEC-------CEEeeEEeeccc--ceEEEECC-CCCCCCCEEEEecCCCCCCCC
Confidence 763 32 222 357899999997 99999988 889999999998864 56554
No 26
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=100.00 E-value=1.2e-34 Score=296.55 Aligned_cols=328 Identities=16% Similarity=0.128 Sum_probs=240.5
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
.+|+++||+++|++|++.+++.++ +.+++|++|| +..+.|++.+.++|+ +|+|+|.+|+..++++|++++ |+
T Consensus 8 ~~~~~~idl~~l~~N~~~l~~~~~--~~~l~~vvKanaYGhg~~~i~~~l~~~G~~~~~vas~~Ea~~l~~aG~~~~-il 84 (380)
T 3co8_A 8 RSTRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDF-IL 84 (380)
T ss_dssp SSCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCC-EE
T ss_pred CCeEEEEcHHHHHHHHHHHHHhCC--CcEEEEEEEecccCCCHHHHHHHHHHcCCCEEEEeeHHHHHHHHhcCCCCC-EE
Confidence 589999999999999999999985 4689999999 567999999999998 899999999999999999865 55
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC-HhHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR-NEKLQW 244 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~-~~el~~ 244 (471)
+.|+ ++.++++.++++++.++|||+++++.|.+.++ .+ +++|+|+||. | ++|||++ ++++.+
T Consensus 85 ~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~-~~-~~~V~l~vdt------------G--~~R~G~~~~ee~~~ 147 (380)
T 3co8_A 85 ILGP-IDVKYAPIASKYHFLTTVSSLDWLKSADKILG-KE-KLSVNLAVDT------------G--MNRIGVRSKKDLKD 147 (380)
T ss_dssp ECSC-CCGGGHHHHHHTTCEEEECCHHHHHHHHHHCT-TC-CEEEEEEBCS------------S--SCSSSBCSHHHHHH
T ss_pred EECC-CCHHHHHHHHHCCCEEEECCHHHHHHHHHhcc-cC-CceEEEEEcC------------C--CCCCCCCCHHHHHH
Confidence 5587 77889999999999999999999999998877 77 8899999974 3 7999999 999999
Q ss_pred HHHHHHc-CCCCceEEEEEeecCCCCCCHHH-HHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHH
Q 012098 245 FLDAVKA-HPNELKLVGAHCHLGSTITKVDI-FRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNL 322 (471)
Q Consensus 245 ~l~~l~~-~~~~l~l~Glh~H~Gs~~~~~~~-~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~ 322 (471)
+++.+++ .+ ++++.|||+|+|++....+. ..++++.+.++.+ . .....++++|++.++.+.... . +. .
T Consensus 148 ~~~~i~~~~~-~l~l~Gl~tH~~~~~~~~~~~~~~q~~~f~~~~~---~-~~~~~~~~~~nS~g~~~~~~~-~-~~---~ 217 (380)
T 3co8_A 148 EIEFLQEHSD-HFSYDGIFTHFASSDNPDDHYFQRQKNRWYELID---G-LIMPRYVHVMNSGAAMYHSKE-L-PG---C 217 (380)
T ss_dssp HHHHHHHCTT-TEEEEEEECCCC---------CHHHHHHHHHHHT---T-SCCCSEEECBCHHHHHHCGGG-C-TT---S
T ss_pred HHHHHHhhCC-CceEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHh---c-cCCCCcEEEeCCHHHhcCccc-c-cC---C
Confidence 9999988 88 89999999999998642222 2334443333332 1 224567888877766543211 0 00 0
Q ss_pred HHHHHHHHhcCCc----EEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhh
Q 012098 323 IDTVRELVLSRNL----NLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLY 383 (471)
Q Consensus 323 ~~~i~~~~~~~~~----~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~ 383 (471)
.+.+|....-++. .+ .|+ ++.+.++++++++|+.+|+.. +..+++++.||++.+++.+
T Consensus 218 ~~~vR~G~~lyG~~p~~~~-~~~-~~~l~pa~~l~a~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~Dg~~r~l- 294 (380)
T 3co8_A 218 NSIARVGTVVYGVEPSEGV-LGP-IDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEY- 294 (380)
T ss_dssp CSEEEESTTTTTCCTTTTS-SSC-GGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGG-
T ss_pred CceEcccHhhhCcCCCccc-ccc-ccCcceeEEEEEEEEEEEEcCCCCeEeeCCEEECCCCCEEEEEecCccccccccc-
Confidence 1112221111221 11 244 778999999999999999732 3568899999999998887
Q ss_pred hcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCC-CccccccCC--------CC---C-C
Q 012098 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDA-GAYCMSMAS--------TY---N-L 450 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~-GAY~~~~~~--------~f---n-~ 450 (471)
+. +++ ++. .+++.|+|++|+ |+++.|+.+ ++++||.|+|.+. |+|+.+... +| + .
T Consensus 295 ~~-~~v-~i~-------g~~~~ivG~vcm--D~~~vdv~~-~~~~GD~v~l~g~~~~~~~~~~~~a~~~~ti~yEi~~~~ 362 (380)
T 3co8_A 295 QD-FQL-LID-------GQKCRQVGQIAM--DQMMVALPH-EYPIGTEVTLIGKSGKYENTLYDLHKHSGVPPWKITVAF 362 (380)
T ss_dssp TT-CEE-EET-------TEEEEEESCCCS--SCEEEEESS-CCCTTCEEEEEEEETTEEECHHHHHHHHSCCHHHHHHTC
T ss_pred CC-CeE-EEC-------CEEeEEeccccc--ceEEEECCC-CCCCCCEEEEEeCCCCCCCCHHHHHHHhCCchheeecCC
Confidence 54 333 222 357899999997 999999887 7899999999985 888775431 11 1 1
Q ss_pred CCCCcEEEEECCe
Q 012098 451 KMRPPEYWVRSLI 463 (471)
Q Consensus 451 ~~~p~~v~v~~~~ 463 (471)
-+|-+.+|+..+-
T Consensus 363 ~~rv~r~y~~~~~ 375 (380)
T 3co8_A 363 SDRLKRMVVDEGH 375 (380)
T ss_dssp CTTSEEEEC----
T ss_pred CCCCCeEEecCCc
Confidence 2567777776554
No 27
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.98 E-value=3.2e-32 Score=276.49 Aligned_cols=299 Identities=14% Similarity=0.098 Sum_probs=224.1
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEE-E
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCI-F 166 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii-~ 166 (471)
.|.++||+++|++|++.+++. + +.+++|++|| +..+.|++.+.+.+.+|+|+|.+|+..++++|+++ +|+ +
T Consensus 3 ~~~~~idl~~l~~N~~~l~~~-~--~~~l~~vvKanaYG~g~~~i~~~l~~~~~~~~va~~~Ea~~~~~~G~~~-~Il~~ 78 (357)
T 1rcq_A 3 PARALIDLQALRHNYRLAREA-T--GARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQ-PILLL 78 (357)
T ss_dssp CCEEEEEHHHHHHHHHHHHHH-H--CSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCS-CEEET
T ss_pred ceEEEEeHHHHHHHHHHHHhC-C--CCeEEEEEEeccccCCHHHHHHHHHHhCCEEEEccHHHHHHHHhCCcCC-CEEEE
Confidence 588999999999999999988 4 5689999999 67899999987776699999999999999999975 476 8
Q ss_pred eCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHH
Q 012098 167 NGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFL 246 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l 246 (471)
.|+ ++.++++.+++.++.++|||+++++.|.+ + +.+++++|+|+||++ ++|||++++++.+++
T Consensus 79 ~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~-a-~~~~~~~V~l~vdtG--------------~~R~G~~~~~~~~~~ 141 (357)
T 1rcq_A 79 EGF-FEASELELIVAHDFWCVVHCAWQLEAIER-A-SLARPLNVWLKMDSG--------------MHRVGFFPEDFRAAH 141 (357)
T ss_dssp TCC-SSGGGHHHHHHTTEEEEECSHHHHHHHHH-C-CCSSCEEEEEEBCSS--------------SCSSSBCHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHcCCEEEECCHHHHHHHHh-h-ccCCCeEEEEEEcCC--------------CCCCCCCHHHHHHHH
Confidence 887 77889999999999999999999999998 6 778889999999843 799999999999999
Q ss_pred HHHHcCCCCceEEEEEeecCCCCCCHH-HHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTITKVD-IFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT 325 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~~~~~-~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~ 325 (471)
+.+++.+ ++++.|+|+|++++....+ ...++++.+.++.+ .... . +++|+.-++.+... ... +.
T Consensus 142 ~~i~~~~-~l~l~Gl~th~~~~~~~~~~~~~~~~~~f~~~~~---~l~~--~-~s~~ns~~~~~~~~-~~~-------~~ 206 (357)
T 1rcq_A 142 ERLRASG-KVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQ---GLEG--E-ISLRNSPAVLGWPK-VPS-------DW 206 (357)
T ss_dssp HHHHHTT-CEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHT---TCCS--C-EECCCHHHHHHCTT-SCC-------SE
T ss_pred HHHHhCC-CCcEEEEEEcccCCCCCCcHHHHHHHHHHHHHHh---ccCC--C-eEEEeCHHhhcCcc-cCC-------CE
Confidence 9999888 8999999999999864332 22334444443332 2221 2 56654333221110 000 01
Q ss_pred HHHHHhcCCcEE---EEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCc
Q 012098 326 VRELVLSRNLNL---IIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQ 387 (471)
Q Consensus 326 i~~~~~~~~~~l---~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~ 387 (471)
+|....-++... ..++ ++.+.++++++++|+.+|+.. +..+++++.||++.+++.+.+. .
T Consensus 207 vR~G~~lyg~~~~~~~~~~-~~~~~~a~~l~~~Vi~vk~~~~g~~v~yg~~~~~~~~~~~a~v~~Gy~dg~~r~l~~~-~ 284 (357)
T 1rcq_A 207 VRPGILLYGATPFERAHPL-ADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAADG-T 284 (357)
T ss_dssp ECCCGGGGTCCSSSSCCTT-GGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCCTT-C
T ss_pred EccCHHhhCCCcccccccc-cCCCceEEEEEEEEEEEEEcCCCCEEccCCeEECCCCeEEEEEEeccccCcccccCCC-C
Confidence 111111122110 1233 678999999999999999732 2457899999999887766432 2
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCCC
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDAG 438 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~G 438 (471)
++ ++. .+++.|+|+.|| |++..++. +|++++||.|+|.+.+
T Consensus 285 ~v-~i~-------g~~~~ivG~vcm--D~~~vd~~~~~~~~~GD~v~l~~~~ 326 (357)
T 1rcq_A 285 LV-FID-------GKPGRLVGRVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357)
T ss_dssp EE-EET-------TEEEEBCSCCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred EE-EEC-------CEEeEEeeEEec--ceEEEECCCCCCCCCCCEEEEECCC
Confidence 22 221 357889999998 99998885 8889999999999865
No 28
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.98 E-value=5.1e-32 Score=276.80 Aligned_cols=339 Identities=15% Similarity=0.109 Sum_probs=234.3
Q ss_pred HhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 87 ETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 87 ~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
+++ +||++++|+++|++|++.|++.++..+.+++|++|||+++.|++.+.+.|+ +|+|+|.+|++.++++|++ +.|+
T Consensus 8 ~~~-~tP~~~idl~~l~~N~~~l~~~~~~~~~~l~~~vKa~~~~~i~~~l~~~G~~~~~vas~~Ea~~~~~~G~~-~ii~ 85 (376)
T 3anu_A 8 DTL-PTPALTIDRTTARRNAERMRERCRALGVRLRPHVKTHKTLEGGLLATGGTRRGIAVSTLAEARFFADGGFD-DILL 85 (376)
T ss_dssp GGS-CSSEEEEEHHHHHHHHHHHHHHHHHHTCEECCBCTTTCCHHHHHHHTTTCCEEEEESSHHHHHHHHHTTCE-EEEE
T ss_pred ccC-CCceEEEeHHHHHHHHHHHHHHHHHcCCcEEEEEhhhcCHHHHHHHHHCCCCeEEEccHHHHHHHHHCCCC-eEEE
Confidence 455 899999999999999999999987434689999999999999999999997 9999999999999999996 3334
Q ss_pred EeCCCCcHHHHHHHHh-----CCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHh
Q 012098 166 FNGNGKLLEDLVLAAQ-----EGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNE 240 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~-----~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~ 240 (471)
+.|+ + +++++.+++ .++.++|||+++++.|.+.+++.+++++|+||||++ ++|||++++
T Consensus 86 ~~~~-~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~g--------------~~R~G~~~~ 149 (376)
T 3anu_A 86 AYPV-P-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGKRWLVWLKLDCG--------------NGRAGVRPT 149 (376)
T ss_dssp EEEC-C-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTCCEEEEEEECCC----------------CSSBCTT
T ss_pred ECCC-c-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCCceEEEEEECCC--------------CCcCCCCCC
Confidence 4565 5 678888887 788899999999999998877778889999999854 799999987
Q ss_pred H--HHHHHHHHHcCCC--CceEEEEEeecCC-CC-CCHH---HH-HHHHHHHHHHHHHHHHcCCCCCEEEecCCCC-cCC
Q 012098 241 K--LQWFLDAVKAHPN--ELKLVGAHCHLGS-TI-TKVD---IF-RDAAVLMVNYIDKIRAQGFEVDYLNIGGGLG-IDY 309 (471)
Q Consensus 241 e--l~~~l~~l~~~~~--~l~l~Glh~H~Gs-~~-~~~~---~~-~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~-i~y 309 (471)
+ +.++++.+++ +. ++++.|+|+|.|+ +. .+.. .+ .++++.+.++.+.+++.|+++.++|+||+.+ +.+
T Consensus 150 ~~~~~~l~~~i~~-~~~~~l~l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Ggs~~~~~~ 228 (376)
T 3anu_A 150 DPAALELAQAIAN-DAPEEVTLVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQAGVPCPQASIGSTPSCSHP 228 (376)
T ss_dssp SHHHHHHHHHHHH-SCTTTEEEEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHSC
T ss_pred chhHHHHHHHHhC-CCCCceEEEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEccCHHHhhh
Confidence 7 8888888877 42 6999999999998 33 3332 23 3467778888888988899999999999998 766
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCcEEEEccc-ceeecccceEEEEEEEEEeeCceeEEEEcCCCCCCcChhhhh--cC
Q 012098 310 YHTGAVLPKPRNLIDTVRELVLSRNLNLIIEPG-RSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYD--AY 386 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG-R~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~~~~~~l~~--~~ 386 (471)
....... +.+|.....++.....++| |+.+.++++++++|+++|.. +.++++|||+..+.++.... ..
T Consensus 229 ~~~~~~~-------~~vr~G~~l~~~~~~~~~~~~~~~~~a~~l~a~Vi~vk~~--~g~~v~dgG~~~~~~~~~~~~~~~ 299 (376)
T 3anu_A 229 IPEMSQL-------TELHPGNYIFYDLQQTQLGSCQPQDVAIRVLTRVIGHYAH--RGQLLVDCGWAALSLHGAGAGQGP 299 (376)
T ss_dssp CGGGGGS-------SEECCCGGGTCCHHHHHHTSSCGGGCCEEEEEEEEEEETT--TTEEEESCCHHHHCSTTCC---CG
T ss_pred hhhcCCc-------eEeccceEEEeccccccccCCCcCceEEEEEEEEEeeeCC--CCeEEEeCCCccccCCCccccccc
Confidence 4320100 1111111111110011345 67889999999999999873 35789999988765553210 00
Q ss_pred -cceEEcCCCCCCCCceEEEEE----ccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEEC
Q 012098 387 -QHIELVSPAPQDAEISKFDVV----GPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461 (471)
Q Consensus 387 -~~~~~~~~~~~~~~~~~~~i~----G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~ 461 (471)
-...+... +...+.-. |.+|.+.+. ..++++++||+|.|.- .|+-. .+|. -+..+++++
T Consensus 300 ~g~g~~~~~-----~~~~~~~~s~eHg~l~~~~~~----~~~~~~~vGd~v~~~p--~h~~~---~~~~--~~~~~~v~~ 363 (376)
T 3anu_A 300 QGCAAIDGH-----PELRLVGLTQEHGLLEHAGGQ----MDFGRFPVGSVLALIP--YHACA---TAAM--HPVYYVHEE 363 (376)
T ss_dssp GGGEEETTC-----TTCEEEEECSSCEEEEC---C----CCTTSSCTTCEEEEEE--SCHHH---HHTT--CSCEEEEET
T ss_pred CCcceeeCC-----CCeEEeccCCcceEEEcCCCc----ccCCCCCCCCEEEEEc--CCchH---HHhh--CCEEEEEEC
Confidence 00111111 11122111 223332221 1345689999999952 11111 2222 255777787
Q ss_pred CeEEEEec
Q 012098 462 LISIIILP 469 (471)
Q Consensus 462 ~~~~~~~~ 469 (471)
++...+-|
T Consensus 364 ~~v~~~w~ 371 (376)
T 3anu_A 364 GKVVALWH 371 (376)
T ss_dssp TEEEEEEC
T ss_pred CEEEEEEe
Confidence 77655544
No 29
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.97 E-value=6.6e-32 Score=276.14 Aligned_cols=300 Identities=13% Similarity=0.140 Sum_probs=226.2
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEeccc----CCcHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEE-
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKA----NNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCI- 165 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKa----N~~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii- 165 (471)
++|++++|+++|++|++.+++.++ +.+++|++|| +..+.|++.+.+ ..+|.|++.+|+..++++|+++ +|+
T Consensus 22 ~~p~~~idl~al~~N~~~l~~~~~--~~~l~~vvKanaYGhg~~~v~~~l~~-~~~~~va~~~Ea~~lr~~G~~~-~Il~ 97 (379)
T 2rjg_A 22 QAATVVINRRALRHNLQRLRELAP--ASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITK-PVLL 97 (379)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHST--TSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCS-CEEE
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCC--CCEEEEEEeecccCCCHHHHHHHHHh-CCEEEEeEHHHHHHHHhCCcCC-CEEE
Confidence 589999999999999999999875 5689999999 788999999888 7799999999999999999975 566
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~ 245 (471)
+.|+ ++.++++.+++.++.++|||+++++.|.+ + +.+++++|+|+||++ ++|||++++|+.++
T Consensus 98 ~~g~-~~~~~~~~~~~~~i~~~vds~~~l~~l~~-a-~~~~~~~V~l~vdtG--------------m~R~G~~~~e~~~~ 160 (379)
T 2rjg_A 98 LEGF-FDARDLPTISAQHFHTAVHNEEQLAALEE-A-SLDEPVTVWMKLDTG--------------MHRLGVRPEQAEAF 160 (379)
T ss_dssp TTCC-SCGGGHHHHHHTTEEEEECSHHHHHHHHH-C-CCSSCBCEEEEBCSS--------------CCSSSBCHHHHHHH
T ss_pred EECC-CCHHHHHHHHHcCcEEEECCHHHHHHHHh-h-CCCCCeEEEEEECCC--------------CCccCCCHHHHHHH
Confidence 6676 77788999999999999999999999988 6 677889999999853 89999999999999
Q ss_pred HHHHHcCCCC-ceEEEEEeecCCCCCCH-HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 246 LDAVKAHPNE-LKLVGAHCHLGSTITKV-DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 246 l~~l~~~~~~-l~l~Glh~H~Gs~~~~~-~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
++.+++.+ + +++.|+|+|++++.... .....+++.+.++.+ . .+.+ +++|++.++.+... ...
T Consensus 161 ~~~i~~~~-~~l~l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~---~--l~~~-~s~gnS~~~~~~~~-~~~------- 225 (379)
T 2rjg_A 161 YHRLTQCK-NVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCE---G--KPGQ-RSIAASGGILLWPQ-SHF------- 225 (379)
T ss_dssp HHHHTTCS-SBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHT---T--CCSC-EECCCHHHHHHCGG-GCS-------
T ss_pred HHHHHhCC-CcEEEEEEEEECCccCCCCcHHHHHHHHHHHHHHh---c--cCCC-eEEEECcchhcCcc-cCC-------
Confidence 99998888 9 99999999999876432 223344444433332 1 2223 88887665433211 000
Q ss_pred HHHHHHHhcCCcEEE----EcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhh
Q 012098 324 DTVRELVLSRNLNLI----IEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYD 384 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~----~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~ 384 (471)
+.+|....-++.... .++ +..+.++++++++|+.+|+.. ...+.+++.||.+.+++.+.+
T Consensus 226 ~~vR~G~~lyG~~p~~~~~~~~-~~~l~pa~~l~a~Vi~vk~~~~G~~v~yg~~~~~~~~~~ia~v~~GyaDG~~r~l~~ 304 (379)
T 2rjg_A 226 DWVRPGIILYGVSPLEDRSTGA-DFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPS 304 (379)
T ss_dssp SEECCCGGGGTCCSSSSSCCGG-GGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCT
T ss_pred CEECccHHHHCCCccccccccc-ccCCceEEEEEEEEEEEEEcCCCCEEeeCCEEECCCCcEEEEEeeecccCcccccCC
Confidence 111111111221110 122 456899999999999999742 245689999999988776553
Q ss_pred cCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCCC
Q 012098 385 AYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDAG 438 (471)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~G 438 (471)
.. ++ ++ ..+++.|+|+.|| |++..++. +|++++||.|+|.+.+
T Consensus 305 ~~-~v-~i-------~g~~~~ivG~vcm--D~~~vdv~~~~~~~~GD~v~l~g~~ 348 (379)
T 2rjg_A 305 GT-PV-LV-------NGREVPIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG 348 (379)
T ss_dssp TC-EE-EE-------TTEEEEBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred Cc-EE-EE-------CCEEeeEeeeecc--ccEEEECCCCCCCCCCCEEEEECCC
Confidence 31 21 11 1357889999998 99998885 8889999999998854
No 30
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.97 E-value=6.4e-30 Score=260.44 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=234.6
Q ss_pred CcE-EEEeHHHHHHHHHHHHHHhcCCCceEEEecccC----CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 92 RPF-YLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN----NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 92 tP~-~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN----~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
+|. .++|+++|++|++.+++.++. +.++++++|+| ....|++.+.+.|+ +|.|++.+|+..++++|++.+ |+
T Consensus 5 ~~~~l~Idl~al~~N~~~l~~~~~~-~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~-il 82 (374)
T 4ecl_A 5 DRAYLEINLNNLEHNVNTLQKAMSP-KCELMAVVKAEAYGHGMYEVTTYLEQIGVSSFAVATIDEGIRLRKYGISSE-IL 82 (374)
T ss_dssp SSEEEEECHHHHHHHHHHHHHTSCT-TCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSE-EE
T ss_pred CcEEEEEcHHHHHHHHHHHHHhcCC-CCEEEEEEccCccCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHhcCCCCC-EE
Confidence 344 479999999999999998753 57899999996 67899999999998 899999999999999999754 54
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~ 245 (471)
+.|+ .+.++++.++++++.++|||+++++.|.+. +++++|+|+||.+ ++|||+. +++.++
T Consensus 83 vlg~-~~~~~~~~~~~~~i~~~v~s~~~l~~l~~~----~~~~~v~lkvdtG--------------m~R~G~~-~e~~~~ 142 (374)
T 4ecl_A 83 ILGY-TSPSRAKELCKYELTQTLIDYRYSLLLNKQ----GYDIKAHIKIDTG--------------MHRLGFS-TEDKDK 142 (374)
T ss_dssp ECSC-CCGGGHHHHHHTTCEEEECCHHHHHHHHTT----CCCEEEEEEEESS--------------SCSSSEE-SSCHHH
T ss_pred EEeC-CCHHHHHHHHHCCCEEEECCHHHHHHHHhc----CCCccEEEEEcCC--------------CCcCccC-HHHHHH
Confidence 4476 356789999999999999999999999765 7889999999853 8999999 888889
Q ss_pred HHHHHcCCCCceEEEEEeecCCCCC----CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 246 LDAVKAHPNELKLVGAHCHLGSTIT----KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 246 l~~l~~~~~~l~l~Glh~H~Gs~~~----~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
++.+++++ ++++.|+|+|++++.. +.....++++++.++.+.+++.|.++.++++|+..++.+.. +...
T Consensus 143 ~~~i~~~~-~l~l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nSa~~~~~~-~~~~----- 215 (374)
T 4ecl_A 143 ILAAFSLK-HIKVAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSSGLNIPKVHIQSSYGLLNYP-ELEC----- 215 (374)
T ss_dssp HHHHTTCT-TEEEEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCHHHHHHCT-TCCC-----
T ss_pred HHHHHhCC-CceEEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHcCCCCCeEEecCCchhhcCc-ccCC-----
Confidence 99998888 9999999999998865 23345677888888888898889999999999876654321 1101
Q ss_pred HHHHHHHHHhcCCcEEEEc-c--cceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhh
Q 012098 322 LIDTVRELVLSRNLNLIIE-P--GRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLY 383 (471)
Q Consensus 322 ~~~~i~~~~~~~~~~l~~E-p--GR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~ 383 (471)
+.+|....-+|..-.-+ + -..-..+++.+.++|+.+|+.. ...+.++..||.|.+.+.+.
T Consensus 216 --d~vR~Gi~lyG~~p~~~~~~~~~~~l~pa~~l~a~Vi~vk~~~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~R~l~ 293 (374)
T 4ecl_A 216 --DYIRVGVALYGVLSSTNDKTKLELDLRPVLSLKAKVVLIRKIKQGESVGYSRAFTATRDSLIAILPIGYADGFPRNLS 293 (374)
T ss_dssp --SEEEESGGGGTCCSSSCCCCSSCCCCCCCEEEEEECCEEEEECTTCBSTTCTTCBCSSCEEEEEESCCGGGTCCGGGT
T ss_pred --CEEcccceeeCCCCccccccccccCceEEEEEEEEEEEEEEcCCCCcCCCCCeEECCCCcEEEEEecccccccchhcc
Confidence 11222222233211100 0 0124678999999999999731 23578999999999877766
Q ss_pred hcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCCCCCCCEEEEcCC
Q 012098 384 DAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPTPDRGAGLVVHDA 437 (471)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~~~~GD~l~~~~~ 437 (471)
+...+ .++ ..+++.|+|.+|| |+++.|+. .|++++||.|.|.+-
T Consensus 294 ~~~~~-v~i-------~g~~~pivGrv~M--D~~~vDvt~~~~~~~Gd~v~l~G~ 338 (374)
T 4ecl_A 294 CGNSY-VLI-------GGRQAPIVGKICM--DQLAVDVTDIPNVKTGSIATLIGK 338 (374)
T ss_dssp TTSCE-EEE-------TTEEEEEESCCCS--SCEEEECTTCSSCCTTCEEEEEEE
T ss_pred CCceE-EEE-------CCEEEEEEChhhh--ceEEEEcCCCCCCCCCCEEEEEeC
Confidence 53111 222 2568899999999 99998874 678899999998763
No 31
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.96 E-value=1e-28 Score=251.12 Aligned_cols=303 Identities=14% Similarity=0.091 Sum_probs=223.8
Q ss_pred CCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCc----HHHHHHHHHcCC-ceEEcCHHHHHHHHHCC-CCCCcE
Q 012098 91 KRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNN----YKILEHLRKLGC-GAVLVSGNELRLALRAG-FDPTKC 164 (471)
Q Consensus 91 ~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~----~~vl~~l~~~G~-g~~vaS~~El~~a~~~G-~~~~~I 164 (471)
.++..++|+++|++|++.+++.+++ .++++++|+|++ ..|++.+.+.|+ +|.|++.+|+..++++| ++. .|
T Consensus 19 ~~~~~~Idl~al~~N~~~l~~~~~~--~~l~aVvKAnaYGHG~~~va~~l~~~G~~~f~Va~~~Ea~~lr~ag~~~~-~i 95 (376)
T 3kw3_A 19 ATAIATIDVRAIVANYRTLAQHVAP--TECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENV-MI 95 (376)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTT--SEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSC-EE
T ss_pred CCeEEEEcHHHHHHHHHHHHHhCCC--CEEEEEECCccccCCHHHHHHHHHHcCCCEEEEeEHHHHHHHHhcCCCCC-CE
Confidence 4667899999999999999999876 689999999864 789999999998 89999999999999998 765 45
Q ss_pred EEeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHH
Q 012098 165 IFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQW 244 (471)
Q Consensus 165 i~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~ 244 (471)
++.++. ..++++.++++++.++|||+++++.|.+.+++.+++++|+|+||+ | ++|||+.++|+.+
T Consensus 96 lvl~~~-~~~~~~~~~~~~i~~~V~s~~~l~~l~~~a~~~~~~~~V~lkVdt------------G--m~R~G~~~~e~~~ 160 (376)
T 3kw3_A 96 ALLNGF-PHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDT------------N--MSRLGLDKKELQK 160 (376)
T ss_dssp EETTCC-CTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCS------------S--CCSSSBCHHHHHH
T ss_pred EEEeCC-CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHcCCCeEEEEEECC------------C--CCcccCCHHHHHH
Confidence 555553 446788889999999999999999999999888999999999984 3 8999999999999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
+++.+++++ ++++.|+|+|+++... +.+...++++++.++.+.+. .+. ++++..-++-... +.-+
T Consensus 161 l~~~i~~~~-~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~----~~~-~h~aNSa~~l~~~--------~~~~ 226 (376)
T 3kw3_A 161 LIKNPTIFE-KAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLP----TCK-VSFANSGGIFLGS--------DFYF 226 (376)
T ss_dssp HHHCCTHHH-HSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSC----CCC-EECCCHHHHTTCG--------GGTT
T ss_pred HHHHHHhCC-CCcEEEEEEECCCCCCCCcHHHHHHHHHHHHHHhhcc----CCC-EEEEeChhhhcCc--------cccC
Confidence 988877777 8999999999998653 22334455555555443321 222 5655433321110 0011
Q ss_pred HHHHHHHhcCCcEEEEcccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 324 DTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
+.+|..+..||....-+. ..-..++..|.++|+.+|+.. ...+.++..||.|.+.+.+.+..
T Consensus 227 d~vR~Gi~lYG~~p~~~~-~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~~s~~~-- 303 (376)
T 3kw3_A 227 DLVRPGIALYGVDPHGKH-PTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILSNKG-- 303 (376)
T ss_dssp TEECCSGGGGTCCTTCCS-SCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGTTTC--
T ss_pred CEEecChhhcCCCCCccc-ccCCcceEEEEEEEEEEEecCCCCeeccCCeEECCCCeEEEEEEecccccchhhcCCCc--
Confidence 223433334443211010 024689999999999999732 23567999999998876665532
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCCC-CCC-CCCCCEEEEcCC
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERE-LPT-PDRGAGLVVHDA 437 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~-lP~-~~~GD~l~~~~~ 437 (471)
.++. ..+++.|+|+.|| |++..|+. .|+ +++||.|+|.+-
T Consensus 304 -~v~i------~G~~~pivGrv~M--D~~~vDvt~~~~~~~~Gd~v~l~G~ 345 (376)
T 3kw3_A 304 -TVYF------NGHKLPIVGHISM--DSIIVDATDLDKKPQRGDWVELIGP 345 (376)
T ss_dssp -EEEE------TTEEEEBCSCCCS--SCEEEECTTCSSCCCTTCEEEEEBT
T ss_pred -eEEE------CCEEEEEeCeecc--ceEEEEcCCCcccCCCCCEEEEECC
Confidence 2222 2568899999999 99998884 676 899999999864
No 32
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.95 E-value=1e-28 Score=251.06 Aligned_cols=304 Identities=17% Similarity=0.109 Sum_probs=225.6
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccC----CcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEE
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKAN----NNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIF 166 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN----~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~ 166 (471)
....++|+++|++|++.+++.++. +.+++|++|+| ....|++.+.+.|+ +|.|++.+|+..++++|++.+ |++
T Consensus 8 ~~~~~Idl~al~~N~~~l~~~~~~-~~~l~avvKanaYGhg~~~va~~l~~~G~~~f~va~~~Ea~~lr~~G~~~~-Ilv 85 (371)
T 3e5p_A 8 PTRLHIDTQAITENVQKECQRLPE-GTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDP-ILI 85 (371)
T ss_dssp SCEEEECHHHHHHHHHHHHHSSCS-SSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSC-EEE
T ss_pred CeEEEEEHHHHHHHHHHHHHhcCC-CCEEEEEECcccccCCHHHHHHHHHHcCCCEEEEEeHHHHHHHHhcCCCCC-EEE
Confidence 345689999999999999998873 57899999995 57899999999998 999999999999999999754 555
Q ss_pred eCCCCcHHHHHHHHhCCCEEEeCCHHHHHHH-HHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHHH
Q 012098 167 NGNGKLLEDLVLAAQEGVFVNVDSEFDLENI-VVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQW 244 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l-~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~~ 244 (471)
.|+ .+.++++.++++++.++|||+++++.| .+.+++.+++++|+|+||+ | ++|||+.+ +|+.+
T Consensus 86 lg~-~~~~~~~~~~~~~i~~~V~s~~~l~~l~~~~a~~~~~~~~V~lkvdt------------G--m~R~G~~~~ee~~~ 150 (371)
T 3e5p_A 86 LSV-VDLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDT------------G--MGRIGFLTPEETKQ 150 (371)
T ss_dssp EEE-CCGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCS------------S--SCSSSBCSSHHHHH
T ss_pred EcC-CCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHcCCceEEEEEECC------------C--CCcCCCCCHHHHHH
Confidence 576 466789999999999999999999999 9888778889999999984 3 89999998 99999
Q ss_pred HHHHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH
Q 012098 245 FLDAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI 323 (471)
Q Consensus 245 ~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~ 323 (471)
+++.+++++ ++++.|+|+|+++... +.+..+++++++.++.+.+++ .+.+++++..-++-... +.. +
T Consensus 151 ~~~~i~~~~-~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~---~~~~~h~~NSa~~~~~~-~~~-------~ 218 (371)
T 3e5p_A 151 AVRFVQSHK-EFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEE---LPRYVHVSNSATALWHP-DVP-------G 218 (371)
T ss_dssp HHHHHHHST-TBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSC---CCSEEECBCHHHHHHCT-TSS-------C
T ss_pred HHHHHHhCC-CccEEEEEEEcCCCCCCCcHHHHHHHHHHHHHHHHhhh---cCCeEEEecChhHhcCc-ccC-------C
Confidence 999998888 8999999999998753 333344555555444433321 14567776543321110 000 1
Q ss_pred HHHHHHHhcCCcEEEEc--ccceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcC
Q 012098 324 DTVRELVLSRNLNLIIE--PGRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAY 386 (471)
Q Consensus 324 ~~i~~~~~~~~~~l~~E--pGR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~ 386 (471)
+.+|..+..||..-.-+ +-..-..+++.|.++|+.+|+.. ...+.++..||.|.+.+.+.+.
T Consensus 219 d~vR~Gi~lYG~~p~~~~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~ls~~- 297 (371)
T 3e5p_A 219 NMIRYGVAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHLQGF- 297 (371)
T ss_dssp SEEEECGGGGTCCTTTTSSCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTTC-
T ss_pred CeEeeCceeECCCccccccccccCcceEEEEEEEEEEEEEcCCCCeECcCCeeECCCCcEEEEEeecchhchhhhcCCC-
Confidence 12333333344321100 01134689999999999999732 2356899999999987776553
Q ss_pred cceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCC
Q 012098 387 QHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDA 437 (471)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~ 437 (471)
. .++. .+++.|+|..|| |++..|+..| +++||.|+|.+-
T Consensus 298 -~-v~i~-------G~~~pivGrv~M--D~~~vDv~~~-~~~Gd~v~l~G~ 336 (371)
T 3e5p_A 298 -T-VLVN-------GKRCEIVGRVCM--DQCMIRLAEE-VPVGPVVTLVGK 336 (371)
T ss_dssp -E-EESS-------SCEEEEESCCCS--SCEEEEESSC-CCSCCEEEEEEE
T ss_pred -e-EEEC-------CEEeEEeceecc--cEEEEECCCC-CCCCCEEEEEcC
Confidence 2 2332 558899999999 9999888554 899999998753
No 33
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.95 E-value=1.3e-27 Score=243.60 Aligned_cols=331 Identities=15% Similarity=0.137 Sum_probs=232.0
Q ss_pred CcE-EEEeHHHHHHHHHHHHHHhcCCCceEEEecccCC----cHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEE
Q 012098 92 RPF-YLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN----NYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCI 165 (471)
Q Consensus 92 tP~-~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~----~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii 165 (471)
+|. .++|+++|++|++ +++.++. +.++++++|||+ ...|++.+.+.|+ +|.|++.+|+..++++|++.. |+
T Consensus 7 r~~~~~Idl~al~~N~~-l~~~~~~-~~~l~aVvKAnaYGhg~~~va~~l~~~G~~~f~Va~~~Ea~~lr~aGi~~~-il 83 (382)
T 4a3q_A 7 RSAYMNVDLNAVASNFK-VFSTLHP-NKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAK-IL 83 (382)
T ss_dssp SSEEEEEEHHHHHHHHH-HHHHHCT-TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSE-EE
T ss_pred CCEEEEEEHHHHHHHHH-HHhhcCC-CCEEEEEEeeccccCCHHHHHHHHHHCCCCEEEEeEHHHHHHHHhCCCCCC-EE
Confidence 444 5799999999999 9998864 578999999975 4789999999998 899999999999999998754 55
Q ss_pred EeCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCC-ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH-HH
Q 012098 166 FNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGK-KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQ 243 (471)
Q Consensus 166 ~~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~-~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e-l~ 243 (471)
+.|+ .+.++++.++++++.++|||+++++.|.+.+++.++ +++|+|+||+ | ++|+|+.+++ +.
T Consensus 84 vlg~-~~~~~~~~~~~~~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvDt------------G--m~R~G~~~~e~~~ 148 (382)
T 4a3q_A 84 VLGV-LPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDT------------G--MGRLGIKDTNTYQ 148 (382)
T ss_dssp ECSC-CCGGGHHHHHHTTCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBCS------------S--SSSSSBCCHHHHH
T ss_pred EEeC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHcCCCceeEEEEECC------------C--CCcCCCChHHHHH
Confidence 5476 456789999999999999999999999998887888 8999999974 3 8999999876 99
Q ss_pred HHHHHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHH
Q 012098 244 WFLDAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNL 322 (471)
Q Consensus 244 ~~l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~ 322 (471)
++++.+++.+ ++++.|+|+|+++... +.+ ...+++++.++.+.+ ..+.+++++..-++-... +. -
T Consensus 149 ~~~~~i~~~~-~l~l~Gl~tH~a~ad~~~~~-~~~Q~~~F~~~~~~l----~~~~~~h~aNSa~~l~~~-~~-------~ 214 (382)
T 4a3q_A 149 EVIEIIQQYE-QLVFEGVFTHFACADEPGDM-TTEQYQRFKDMVNEA----IKPEYIHCQNSAGSLLMD-CQ-------F 214 (382)
T ss_dssp HHHHHHHHCT-TEEEEEEECCC-------CH-HHHHHHHHHHHHTTS----CCCSEEECCCHHHHHHCC-CT-------T
T ss_pred HHHHHHHhCC-CceEEEEEEECcCCCCCCch-HHHHHHHHHHHHHhh----CCCCcEEEEcChhhhcCc-cc-------C
Confidence 9999998888 8999999999997643 222 444555554444332 456677777543321110 00 0
Q ss_pred HHHHHHHHhcCCcEEEEc-c--cceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhh
Q 012098 323 IDTVRELVLSRNLNLIIE-P--GRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYD 384 (471)
Q Consensus 323 ~~~i~~~~~~~~~~l~~E-p--GR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~ 384 (471)
++.+|..+..||..-.-+ + -..-..+++.|.++|+.+|+.. ...+.++..||.|.+.+.+.+
T Consensus 215 ~d~vR~Gi~lYG~~p~~~~~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~~s~ 294 (382)
T 4a3q_A 215 CNAIRPGISLYGYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG 294 (382)
T ss_dssp CSEECCCGGGGTCCSSHHHHHHCSSCCCCCEEEEEECCEEEC------------------CEEEEESCCGGGTCCGGGTT
T ss_pred CCeEeecceeECCCcccccccccccCCceeEEEEEEEEEEEEcCCCCEEcCCCeEECCCCeEEEEEeeccccccchhcCC
Confidence 112333333344321100 0 1124689999999999999732 135678999999998776665
Q ss_pred cCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCcc-cccc-------CC-CC---C-CC
Q 012098 385 AYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAY-CMSM-------AS-TY---N-LK 451 (471)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY-~~~~-------~~-~f---n-~~ 451 (471)
. + .++ ..+++.|+|+.|| |++..|+.- ++++||.|++.+-..- ..+. .+ +| + .-
T Consensus 295 -~-~-v~i-------~G~~~pivGrv~M--D~~~vDvt~-~~~~Gd~V~l~G~~g~~~~~~~~~A~~~gti~yEi~~~l~ 361 (382)
T 4a3q_A 295 -S-F-VNV-------NGHQCEVIGRVCM--DQTIVKVPD-QVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNLS 361 (382)
T ss_dssp -C-E-EEE-------TTEEEEBCSCCCS--SCEEEEECT-TCCTTCEEEEECSCSSSTTSHHHHHHHTTSCHHHHHHTSC
T ss_pred -C-E-EEE-------CCEEEEEeeeeec--cEEEEECCC-CCCCCCEEEEEeCCCCCCCCHHHHHHHHCCccceeecCCC
Confidence 2 2 222 2568899999999 999988755 6899999998764311 0100 00 11 1 12
Q ss_pred CCCcEEEEECCeEEEEe
Q 012098 452 MRPPEYWVRSLISIIIL 468 (471)
Q Consensus 452 ~~p~~v~v~~~~~~~~~ 468 (471)
+|-+.+|+++++ ..++
T Consensus 362 ~Rv~R~y~~~~~-~~~~ 377 (382)
T 4a3q_A 362 RRLPRIYHDGDQ-RFVT 377 (382)
T ss_dssp TTSCEEEEETTE-EEEE
T ss_pred CCccEEEEcCCe-EEEE
Confidence 577888898888 6554
No 34
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.95 E-value=8.3e-26 Score=233.99 Aligned_cols=259 Identities=16% Similarity=0.184 Sum_probs=202.6
Q ss_pred HHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcE
Q 012098 86 METVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKC 164 (471)
Q Consensus 86 ~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~I 164 (471)
.+++ +||++++|+++|++|++.|++.++..+++++|++|+|..+.|++.+.+.|+ +|+|+|.+|++.++++|+ ++|
T Consensus 41 ~~~~-~tP~~viDl~al~~N~~~l~~~~~~~gv~l~~vvKah~~~~va~~l~~~G~~g~~vas~~Ea~~l~~~Gi--~~i 117 (426)
T 3gwq_A 41 NEDV-SLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGV--SRV 117 (426)
T ss_dssp GTCB-CSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTC--CEE
T ss_pred hccC-CCCeEEEeHHHHHHHHHHHHHHHhhcCCEEEEEEccCCCHHHHHHHHHCCCCeEEEeCHHHHHHHHHCCC--CeE
Confidence 3455 899999999999999999999886435689999999999999999999997 999999999999999998 478
Q ss_pred EEeCCCCcHHHHHHHHh------CCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCC
Q 012098 165 IFNGNGKLLEDLVLAAQ------EGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR 238 (471)
Q Consensus 165 i~~g~~k~~~~l~~a~~------~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~ 238 (471)
++.++...+++++.+++ .++.++|||+++++.|.+.+++.+++++|+|+||++ ++|+|+.
T Consensus 118 ll~~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~VdtG--------------~~R~Gv~ 183 (426)
T 3gwq_A 118 LMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP--------------GGRTGVR 183 (426)
T ss_dssp EECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT--------------TSSSSBC
T ss_pred EEECCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCCC--------------CCcCCCC
Confidence 88877666677766543 234689999999999999999999999999999853 7999997
Q ss_pred -HhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEecCCCCcCCCCCCC
Q 012098 239 -NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGF---EVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 239 -~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~---~l~~ldiGGGl~i~y~~~~~ 314 (471)
.+++.++++.+++++.++++.|||+|.|+. .+.+.++++++++.++++++++.|. ++.+|++||.-
T Consensus 184 ~~~e~~~l~~~i~~~~~~l~l~Gl~th~g~~-~~~~~~~~~~~~l~~l~~~L~~~g~~~~~~~~lS~G~S~--------- 253 (426)
T 3gwq_A 184 DAAQRNAVLEAITRYPDTLKLAGVELYEGVL-KEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSA--------- 253 (426)
T ss_dssp SHHHHHHHHHHHHTSTTTEEEEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCST---------
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeEEEEcccc-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCCh---------
Confidence 489999999988874269999999999975 4677788889999999999998886 78999999752
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEcccceee---------------------------cccceEEEEEEEEEeeCceeE
Q 012098 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGRSLI---------------------------ANTCCLVNHVTGVKTNGTKNF 367 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lv---------------------------a~ag~lvt~V~~vk~~~~~~~ 367 (471)
+++..++.+...-...+....+-+|.|++ .+|..++++|+++.+ ..+
T Consensus 254 ---~~~~a~~~~~~~~~~~~g~t~vR~Gs~if~d~~~y~~~q~~~~~~~~~~~~~~~~~~~Al~v~a~Vis~p~---~~~ 327 (426)
T 3gwq_A 254 ---WYDVVAEEFVKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE---PDR 327 (426)
T ss_dssp ---THHHHHHHTHHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE---TTE
T ss_pred ---hHHHHHhhhhccccCCCcCEEEecceEEEcChHHHHHhhhhhcccCccccccCCccceeeEEEEEEecccC---CCE
Confidence 12222221111000112234455555443 346678999998543 258
Q ss_pred EEEcCCCCCC
Q 012098 368 IVIDGSMAEL 377 (471)
Q Consensus 368 ~ivD~g~~~~ 377 (471)
+++|+|...+
T Consensus 328 aivd~G~~~~ 337 (426)
T 3gwq_A 328 AIIGLGKRDS 337 (426)
T ss_dssp EEESCCTTTS
T ss_pred EEECCCcccc
Confidence 8999997765
No 35
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.94 E-value=7.7e-27 Score=236.88 Aligned_cols=302 Identities=14% Similarity=0.095 Sum_probs=221.2
Q ss_pred CcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCC----cHHHHHHHHHcCCceEEcCHHHHHHHHHCCCCCCcEEEe
Q 012098 92 RPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN----NYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFN 167 (471)
Q Consensus 92 tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~----~~~vl~~l~~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~ 167 (471)
....++|+++|++|++.+++.++. +.++++++|+|+ ...|++.+.+...+|.|++.+|+..++++|++.+ |++.
T Consensus 8 ~~~~~Idl~al~~N~~~l~~~~~~-~~~l~aVvKanaYGhg~~~va~~l~~~~~~f~va~~~Ea~~lr~~G~~~~-ilvl 85 (367)
T 3mub_A 8 PTKALIHLGAIRQNIQQMGAHIPQ-GTLKLAVVKANAYGHGAVAVAKAIQDDVDGFCVSNIDEAIELRQAGLSKP-ILIL 85 (367)
T ss_dssp SCEEEECHHHHHHHHHHHHHTSCT-TCEEEEECHHHHHTTCHHHHHHHHGGGCSEEEESSHHHHHHHHHTTCCSC-EEEE
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCC-CCEEEEEECcccccCCHHHHHHHHHHhCCeEEEeEHHHHHHHHHcCCCCC-EEEE
Confidence 345689999999999999998873 568999999965 4789998887733999999999999999999764 5444
Q ss_pred CCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHHHHH
Q 012098 168 GNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQWFL 246 (471)
Q Consensus 168 g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~~~l 246 (471)
|+ .+.++++.++++++.++|||+++++.|.+.+++. ++++|+|+||. | ++|+|+.+ +|+.+++
T Consensus 86 g~-~~~~~~~~~~~~~l~~~V~s~~~l~~l~~~a~~~-~~~~V~lkvdt------------G--m~R~G~~~~ee~~~~~ 149 (367)
T 3mub_A 86 GV-SEIEAVALAKEYDFTLTVAGLEWIQALLDKEVDL-TGLTVHLKIDS------------G--MGRIGFREASEVEQAQ 149 (367)
T ss_dssp EE-CCGGGHHHHHHTTEEEEECCHHHHHHHHHTTCCC-TTCEEEEEECS------------S--CCSSSBCSHHHHHHHH
T ss_pred cC-CCHHHHHHHHHcCCEEEECCHHHHHHHHHHHHhc-CCeeEEEEECC------------C--CCcCCCCcHHHHHHHH
Confidence 65 3557799999999999999999999999887666 78999999984 3 89999998 9999999
Q ss_pred HHHHcCCCCceEEEEEeecCCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHHH
Q 012098 247 DAVKAHPNELKLVGAHCHLGSTIT-KVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDT 325 (471)
Q Consensus 247 ~~l~~~~~~l~l~Glh~H~Gs~~~-~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~~ 325 (471)
+.+++ + ++++.|+|+|+++... +.+..+++++++.++.+.+++ .+.+++++..-++-... +. -++.
T Consensus 150 ~~i~~-~-~l~l~Gl~tH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~---~~~~~h~~NSa~~l~~~-~~-------~~d~ 216 (367)
T 3mub_A 150 DLLQQ-H-GVCVEGIFTHFATADEESDDYFNAQLERFKTILASMKE---VPELVHASNSATTLWHV-ET-------IFNA 216 (367)
T ss_dssp HHHHH-T-TCEEEEEEECCSSTTSSCCHHHHHHHHHHHHHHHTCSS---CCSEEEEECHHHHHHCG-GG-------CCSE
T ss_pred HHHcc-C-CcEEEEEEEEccCCCCCCCHHHHHHHHHHHHHHHHhhh---cCCeEEEecChHHhcCc-cc-------CCCe
Confidence 99988 7 9999999999998653 333445566666665554432 14567776443321100 00 0112
Q ss_pred HHHHHhcCCcEEEEcc--cceeecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcChhhhhcCcc
Q 012098 326 VRELVLSRNLNLIIEP--GRSLIANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIRPSLYDAYQH 388 (471)
Q Consensus 326 i~~~~~~~~~~l~~Ep--GR~lva~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~~~l~~~~~~ 388 (471)
+|.....||..-.-+. -..-..+++.|.++|+.+|+.. ...+.+++.||.|.+.+.+.+. .
T Consensus 217 vR~Gi~lYG~~p~~~~~~~~~~l~pv~~l~a~i~~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~R~ls~~--~ 294 (367)
T 3mub_A 217 VRMGDAMYGLNPSGAVLDLPYDLIPALTLESALVHVKTVPAGACMGYGATYQADSEQVIATVPIGYADGWTRDMQNF--S 294 (367)
T ss_dssp EEECTTTTTCCTTTTSSCCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECSSCEEEEEESCCGGGTCCGGGTTC--E
T ss_pred EEhhhHhhCCCCcccccccccCcceEEEEEEEEEEEEEcCCCCeeCCCCeEECCCCeEEEEEeecchhchhhhcCCC--e
Confidence 2322233443210000 0124689999999999999732 2356899999999987776553 2
Q ss_pred eEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCC
Q 012098 389 IELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDA 437 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~ 437 (471)
.++. .+++.|+|..|| |++..|+..| +++||.|++.+-
T Consensus 295 -v~i~-------G~~~pivGrv~M--D~~~vDv~~~-~~~Gd~v~l~G~ 332 (367)
T 3mub_A 295 -VLVD-------GQACPIVGRVSM--DQITIRLPKL-YPLGTKVTLIGS 332 (367)
T ss_dssp -EEET-------TEEEEBCSCCCS--SCEEEEESSC-CCTTCEEEEEEE
T ss_pred -EEEC-------CEEeEEeChhcc--cEEEEECCCC-CCCCCEEEEEeC
Confidence 2332 568899999999 9999888554 899999988764
No 36
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.93 E-value=2.1e-25 Score=227.80 Aligned_cols=259 Identities=15% Similarity=0.190 Sum_probs=191.0
Q ss_pred HHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcE
Q 012098 86 METVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKC 164 (471)
Q Consensus 86 ~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~I 164 (471)
++++ +||++++|+++|++|++.|++.++..+.++++++|++..+.|++.+.+.|+ +|.|++..|++.++++|++ ..|
T Consensus 9 ~~~~-~tP~~~idl~al~~N~~~l~~~~~~~~~~l~~vvKah~~~~va~~l~~~G~~~~~va~~~Ea~~l~~~Gi~-~~i 86 (376)
T 3llx_A 9 IAHP-DTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT-DLL 86 (376)
T ss_dssp GGSS-CSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCC-EEE
T ss_pred hhhC-CCcEEEEcHHHHHHHHHHHHHHHHhCCCeEEEEecccCCHHHHHHHHhcCCCcEEEecHHHHHHHHhCCCC-cEE
Confidence 3455 899999999999999999999987445679999999999999999999997 8999999999999999986 334
Q ss_pred EEeCCCCcHHHHHHHH-----hCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH
Q 012098 165 IFNGNGKLLEDLVLAA-----QEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN 239 (471)
Q Consensus 165 i~~g~~k~~~~l~~a~-----~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~ 239 (471)
+..+. . +++++.++ +.++.++|||+++++.|.+.+++.+++++|+|+||++ ++|+|+.+
T Consensus 87 l~~~~-~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vdtG--------------~~R~G~~~ 150 (376)
T 3llx_A 87 YAVGI-A-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSD--------------DHRGGIKP 150 (376)
T ss_dssp EEEEC-C-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS--------------SSSSCBCT
T ss_pred EeCCC-C-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC--------------CCCCCCCC
Confidence 44444 3 56777776 3567789999999999999998889999999999853 79999998
Q ss_pred hH--HHHHHHHHHcCCCCceEEEEEeecCCCCC-C-H----HHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCC
Q 012098 240 EK--LQWFLDAVKAHPNELKLVGAHCHLGSTIT-K-V----DIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311 (471)
Q Consensus 240 ~e--l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~-~-~----~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~ 311 (471)
++ +.++++.+ ++++.|||+|+|+... + + ..++++++.+.++.+.+++.|.++.++++||+.++.+..
T Consensus 151 ~~~~l~~~~~~l-----~l~l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~vs~g~S~~~~~~~ 225 (376)
T 3llx_A 151 SDSKLLTIAKTL-----GEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGE 225 (376)
T ss_dssp TCTHHHHHHHHH-----GGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCS
T ss_pred chHHHHHHHHHh-----CCEEeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCChhhhhhh
Confidence 76 66666554 5899999999998653 2 2 235667777888888888889999999999987654432
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEccc-ceeecccceEEEEEEEEEeeCceeEEEEcCCCCC
Q 012098 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPG-RSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAE 376 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpG-R~lva~ag~lvt~V~~vk~~~~~~~~ivD~g~~~ 376 (471)
...... .+|....-++..-..+.+ .....++..+.++|++++... ..+++|+|...
T Consensus 226 ~~~~~~-------~vR~G~~lyg~~~~~~~~~~~~~~pa~~l~a~Vis~~~~~--g~~i~d~G~~~ 282 (376)
T 3llx_A 226 DFSDIS-------EVRAGVYTTFDLVMKNIGVCDFSHIAMSVVTTVIGHNKEK--NWLLTDSGWMA 282 (376)
T ss_dssp CCTTCS-------EECCCGGGTCCHHHHHHTSCCGGGCCEEEEEEEEEEETTT--TEEEESCCHHH
T ss_pred hcCCcc-------EeccceEEeccHhHhhcCCCCcCCeeEEEEEEEEeeeCCC--CeEEEccCccc
Confidence 110000 000000000000000000 112457999999999999732 36788998543
No 37
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.92 E-value=2.9e-25 Score=226.65 Aligned_cols=298 Identities=11% Similarity=0.132 Sum_probs=217.1
Q ss_pred cEEEEeHHHHHHHHHHHHHHhcCCCceEEEecccCC----cHHHHHHHHHc-CC-ceEEcCHHHHHHHHHCCCCCCcEEE
Q 012098 93 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANN----NYKILEHLRKL-GC-GAVLVSGNELRLALRAGFDPTKCIF 166 (471)
Q Consensus 93 P~~v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~----~~~vl~~l~~~-G~-g~~vaS~~El~~a~~~G~~~~~Ii~ 166 (471)
...++|+++|++|++.+++. +. +.++++++|+|+ ...|++.+.+. |+ +|.|++.+|+..++++|++. .|++
T Consensus 10 ~~l~Idl~al~~N~~~l~~~-~~-~~~l~aVvKAnaYGHG~~~va~~l~~~~G~~~f~Va~~~Ea~~lr~aGi~~-~Ilv 86 (395)
T 3hur_A 10 TWVSVDLDAAAHNLQEIREW-TK-AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTL-PIWV 86 (395)
T ss_dssp EEEEEEHHHHHHHHHHHHHH-HT-CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCS-CEEE
T ss_pred eEEEEeHHHHHHHHHHHHhc-CC-CCEEEEEECCCccCCCHHHHHHHHHhcCCCCEEEEeeHHHHHHHHhcCCCC-CEEE
Confidence 34579999999999999987 33 568999999986 47899999999 98 89999999999999999875 4666
Q ss_pred eCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhH-HHHH
Q 012098 167 NGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEK-LQWF 245 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~e-l~~~ 245 (471)
.|+. ..++++.++++++..+|+|+++++.|.+. + + +++|+|+||+ | ++|+|+.+++ +.++
T Consensus 87 lg~~-~~~~~~~~~~~~l~~~V~s~~~l~~l~~~-~--~-~~~V~lkvDt------------G--m~R~G~~~~e~~~~~ 147 (395)
T 3hur_A 87 LGAW-DYSDLKLFIDHDIVITIPSLAWLQNLPDF-E--G-TLKVSLAIDT------------G--MTRIGFDKADEISAA 147 (395)
T ss_dssp SSCC-CGGGHHHHHHTTEEEEECCHHHHHTCCCC-S--S-CEEEEEEBCC------------S--SCSSSBCCHHHHHHH
T ss_pred EcCC-CHHHHHHHHHcCCEEEECCHHHHHHHHHh-c--C-CCcEEEEEcC------------C--CCCcCCChHHHHHHH
Confidence 6774 56788899999999999999999998776 3 6 8899999974 3 8999999876 9999
Q ss_pred HHHHHcCCCCceEEEEEeecCCCCC-CHH---HHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCC-CCCCCHH
Q 012098 246 LDAVKAHPNELKLVGAHCHLGSTIT-KVD---IFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG-AVLPKPR 320 (471)
Q Consensus 246 l~~l~~~~~~l~l~Glh~H~Gs~~~-~~~---~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~-~~~~~~~ 320 (471)
++.+++++ ++++.|+++|+++... +.+ ....+++++.++.+.+ ..++.+++++..-++-... + ..
T Consensus 148 ~~~i~~~~-~l~l~Gl~TH~a~ad~~~~~~~~~~~~Q~~~F~~~~~~l---~~~~~~~h~aNSa~~l~~~-~~~~----- 217 (395)
T 3hur_A 148 KKIIDKNP-QLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQ---GFDPSLFSMANSATCIWHH-DDPR----- 217 (395)
T ss_dssp HHHHHHCT-TEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTS---CCCGGGEECCCHHHHHHTT-TCTT-----
T ss_pred HHHHHhCC-CceEEEEEEeCcCCCCCCCcchHHHHHHHHHHHHHHHhc---cCCCCeEEEcCCHHHhcCc-cccc-----
Confidence 99998888 9999999999998753 333 3455555555544432 2344566766443321110 0 00
Q ss_pred HHHHHHHHHHhcCCcEEEEcccc----ee--ecccceEEEEEEEEEeeC---------------ceeEEEEcCCCCCCcC
Q 012098 321 NLIDTVRELVLSRNLNLIIEPGR----SL--IANTCCLVNHVTGVKTNG---------------TKNFIVIDGSMAELIR 379 (471)
Q Consensus 321 ~~~~~i~~~~~~~~~~l~~EpGR----~l--va~ag~lvt~V~~vk~~~---------------~~~~~ivD~g~~~~~~ 379 (471)
.-++.+|..+..||..- .++. .- ..+++.|.++|+.+|+.. ...++++..||.|.+.
T Consensus 218 ~~~d~vR~Gi~LYG~~p--~~~~~~~~~~~~l~pv~~l~a~Ii~vk~v~~G~~vgYG~~~~a~~~~~ia~v~iGYaDG~~ 295 (395)
T 3hur_A 218 ISFAAIRPGQLISGVNV--SNGELKMPPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWL 295 (395)
T ss_dssp SCCSEECCCGGGGTCCT--TTTSSCCCTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGG
T ss_pred ccCceEecChhhcCCCC--CccccccccccccceeEEEEEEEEEEEEeCCCCeEcCCCeEECCCCcEEEEEEeccccccc
Confidence 00112333333344311 0111 12 679999999999999832 2357899999999886
Q ss_pred hhhhhcCcceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCC
Q 012098 380 PSLYDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDA 437 (471)
Q Consensus 380 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~ 437 (471)
+.+.+ . + .++ ..+++.|+|+.|| |+++.|+.- ++++||.|+|.+-
T Consensus 296 R~ls~-~-~-v~i-------~G~~~pivGrv~M--D~~~vDvt~-~~~~GD~V~l~G~ 340 (395)
T 3hur_A 296 RRMQK-S-S-VII-------NGKRMPIIGRITM--DQTMVKLDR-KYPIGTRVTLIGK 340 (395)
T ss_dssp GGEEE-E-E-EEE-------TTEEEEBCSCCCS--SCEEEECSS-CCCTTCEEEEEES
T ss_pred hhcCC-C-e-EEE-------CCEEEEEECceec--cEEEEECCC-CCCCCCEEEEEcC
Confidence 66554 1 2 222 2568899999999 999988865 7899999988764
No 38
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.88 E-value=4.4e-21 Score=188.14 Aligned_cols=193 Identities=16% Similarity=0.057 Sum_probs=158.9
Q ss_pred EEeHHHHHHHHHHHHHHhcC--CCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHC---------------
Q 012098 96 LYSKPQITRNVEAYKQALEG--LNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRA--------------- 157 (471)
Q Consensus 96 v~d~~~l~~n~~~~~~a~~~--~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~--------------- 157 (471)
.+|+++|++|++.+++..+. .+++++|++|+++...|++. .+.|+ +|.|++.+|+..++++
T Consensus 26 ~idl~ai~~Ni~~~~~~~~~~~~~~~l~avvK~hg~~~va~~-~~~G~~~f~va~~~Ea~~lr~~l~~~~~~~g~~~~~~ 104 (282)
T 3cpg_A 26 TDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAA-IDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGVA 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHH-HHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEEEECCCCHHHHHHH-HHCCCCEEEEEeHHHHHHHHHhhhhhccccccccccc
Confidence 57899999999999987752 35789999999999999998 68898 8999999999999987
Q ss_pred CCC----CCcEE--EeCCCCcHHHHHHHHh-CCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCC
Q 012098 158 GFD----PTKCI--FNGNGKLLEDLVLAAQ-EGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230 (471)
Q Consensus 158 G~~----~~~Ii--~~g~~k~~~~l~~a~~-~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~ 230 (471)
|++ +..|. +.|+.++ ++++.+++ .++.++|||+++++.|.+.+++.+++++|+||||++ .
T Consensus 105 G~~~d~~~~~i~~~~iG~~~~-~~~~~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~lkVdtG------------m 171 (282)
T 3cpg_A 105 GAAPDAAAEHIPFHLIGQLQS-NKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNES------------G 171 (282)
T ss_dssp ------CCEEECEEECSCCCG-GGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCS------------S
T ss_pred cccccccccceeeeecChhHH-HHHHHHHHhCCEEEEeCCHHHHHHHHHHHHhcCCCceEEEEEECC------------C
Confidence 663 33454 4577554 45888877 788899999999999999888889999999999864 2
Q ss_pred CCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHc-CC---CCCEEEecCC
Q 012098 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQ-GF---EVDYLNIGGG 304 (471)
Q Consensus 231 ~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~---~l~~ldiGGG 304 (471)
+.+|||++++++.++++.+++++ ++++.|||+|++++. +.+..+..++++.++.+.+++. |+ .+..+++|+.
T Consensus 172 e~~R~G~~~ee~~~l~~~i~~~~-~l~l~Gl~th~~~~~-~~~~~~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S 247 (282)
T 3cpg_A 172 EESKSGCDPAHAIRIAQKIGTLD-GIELQGLMTIGAHVH-DETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMT 247 (282)
T ss_dssp CTTSSSBCGGGHHHHHHHHHTCT-TEEEEEEECCCCCSS-CHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCT
T ss_pred CCCCCCcCHHHHHHHHHHHHhCC-CceEEeEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCc
Confidence 35999999999999999999888 999999999999875 5666667788888888888775 63 5778887753
No 39
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=99.79 E-value=5.2e-18 Score=162.38 Aligned_cols=187 Identities=18% Similarity=0.099 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHh-------cC--CCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCC----CCcEEE
Q 012098 101 QITRNVEAYKQAL-------EG--LNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFD----PTKCIF 166 (471)
Q Consensus 101 ~l~~n~~~~~~a~-------~~--~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~----~~~Ii~ 166 (471)
.|.+|++.+++.+ .. .+++++.++|+.+.. .++.+.+.|+ .|.++..+|+...++.+.+ +-.+.|
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg~~-~i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~~i~w~~ 82 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKPAS-AIAEAIDAGQRQFSEHYVQEGVDKIRHFQELGVTGLEWNF 82 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCCHH-HHHHHHHTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCCHH-HHHHHHHcCCCEEEEecHHHHHHHHHhhhhccCCCeEEee
Confidence 3556666665554 11 146899999998854 4677889998 7999999999877766432 334578
Q ss_pred eCCCCcHHHHHHHH-hCCCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHH
Q 012098 167 NGNGKLLEDLVLAA-QEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWF 245 (471)
Q Consensus 167 ~g~~k~~~~l~~a~-~~gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~ 245 (471)
.|+..+ +.++.++ ..++..+|||+++++.|.+.+.+.+++++|+|+||+ |++++|||++++++.++
T Consensus 83 iG~lq~-nk~~~~~~~~~~i~sVds~~~a~~l~~~a~~~~~~~~V~lqVnt------------G~e~~R~G~~~ee~~~l 149 (245)
T 3sy1_A 83 AGPLQS-NKSRLVAEHFDWCITIDRLRIATRLNDQRPAELPPLNVLIQINI------------SDENSKSGIQLAELDEL 149 (245)
T ss_dssp CSCCCG-GGHHHHHHHCSEEEEECCHHHHHHHHHHSCTTSCCEEEEEEBCC------------SCTTCCSSBCGGGHHHH
T ss_pred cCCCCh-HHHHHHHHHCCEEEecCCHHHHHHHHHHHHHcCCCceEEEEEEC------------CCCcCCcCCCHHHHHHH
Confidence 888654 4566666 478889999999999999998888899999999985 45699999999999999
Q ss_pred HHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 246 LDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 246 l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
++.+.+++ ++++.|||+|. ++..+++.+++.++.+.++++.|++.+.++++|++|+
T Consensus 150 ~~~i~~~~-~l~l~Glmt~~-~~~~d~~~~~~~f~~l~~l~~~l~~~~~~~~~LSmGm 205 (245)
T 3sy1_A 150 AAAVAELP-RLRLRGLSAIP-APESEYVRQFEVARQMAVAFAGLKTRYPHIDTLALGQ 205 (245)
T ss_dssp HHHHTTCT-TEEEEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTSTTCCEEECCC
T ss_pred HHHHHcCC-CCeEEEEEEeC-CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEeccC
Confidence 99999888 99999999986 5667788899999999999999998877899999886
No 40
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=99.71 E-value=3.2e-16 Score=151.06 Aligned_cols=187 Identities=14% Similarity=0.048 Sum_probs=139.7
Q ss_pred eHHHHHHHHHHHHHHhcC----CCceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCCCCCcEEEe--CCC
Q 012098 98 SKPQITRNVEAYKQALEG----LNSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGFDPTKCIFN--GNG 170 (471)
Q Consensus 98 d~~~l~~n~~~~~~a~~~----~~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~~~~~Ii~~--g~~ 170 (471)
+++.+++|++.+.+.... .+++++.++|+++...|. .+.+.|+ +|.|++..|+...+++ ++. .|.+. |+.
T Consensus 17 nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~-~~~~aG~~~fgva~vqEa~~~r~~-~~~-~l~~h~iG~l 93 (256)
T 1ct5_A 17 QYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQ-ILYDHGVREFGENYVQELIEKAKL-LPD-DIKWHFIGGL 93 (256)
T ss_dssp HHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHH-HHHHHTCCEEEECCHHHHHHHHHH-SCT-TCEEEECSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHH-HHHHcCCCEEEEEcHHHHHHHHHh-ccc-CeeEeecCCC
Confidence 456777777777665522 247899999999987775 5788998 8999999999998887 543 35554 764
Q ss_pred CcHHHHHHH--H-hCCCEEEeCCHHHHHHHHHHHHHcCC---ceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHH
Q 012098 171 KLLEDLVLA--A-QEGVFVNVDSEFDLENIVVASRIAGK---KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQ 243 (471)
Q Consensus 171 k~~~~l~~a--~-~~gv~i~vDs~~el~~l~~~a~~~g~---~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~ 243 (471)
.+ +.++.+ + +.++..+|||++.++.|.+.+.+.|+ +++|+|+||. |++++|+|+++ +++.
T Consensus 94 q~-nk~~~~~~~~~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVdt------------G~e~~R~G~~~~~e~~ 160 (256)
T 1ct5_A 94 QT-NKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINT------------SHEDQKSGLNNEAEIF 160 (256)
T ss_dssp CG-GGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCC------------SSSCCSSSBCCHHHHH
T ss_pred CH-HHHHHHhcccccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEEC------------CCCCCCcCcCchHHHH
Confidence 43 446666 4 45678899999999999999888888 8999999984 45689999999 8999
Q ss_pred HHHHHHH--cCCCCceEEEEEeec--CCCCCCHHHHHHHHHHHHHHHHHHHHcCC-CCCEEEecC
Q 012098 244 WFLDAVK--AHPNELKLVGAHCHL--GSTITKVDIFRDAAVLMVNYIDKIRAQGF-EVDYLNIGG 303 (471)
Q Consensus 244 ~~l~~l~--~~~~~l~l~Glh~H~--Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~-~l~~ldiGG 303 (471)
++++.+. +++ ++++.|||+|. +.. .+.+..+..++.+.++.+.+++ ++ ++..+++|.
T Consensus 161 ~l~~~i~~~~~~-~L~l~Glmth~~~~~a-d~~~~~~~~f~~~~~~~~~l~~-~~~~~~~lS~Gm 222 (256)
T 1ct5_A 161 EVIDFFLSEECK-YIKLNGLMTIGSWNVS-HEDSKENRDFATLVEWKKKIDA-KFGTSLKLSMGM 222 (256)
T ss_dssp HHHHHHHSTTCC-SEEEEEEECCCCCC----------HHHHHHHHHHHHHHH-HHCCCCEEECCC
T ss_pred HHHHHHHHccCC-CeeEEEEEEECCcCCC-CCHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEecc
Confidence 9999998 888 99999999999 543 2334455677778888888876 33 466776553
No 41
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=99.65 E-value=6.4e-15 Score=140.52 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=129.9
Q ss_pred CceEEEecccCCcHHHHHHHHHcCC-ceEEcCHHHHHHHHHCCC---CCCcEEEeCCCCcHHHHHHHHh-CCCEEEeCCH
Q 012098 117 NSIIGYAIKANNNYKILEHLRKLGC-GAVLVSGNELRLALRAGF---DPTKCIFNGNGKLLEDLVLAAQ-EGVFVNVDSE 191 (471)
Q Consensus 117 ~~~i~yavKaN~~~~vl~~l~~~G~-g~~vaS~~El~~a~~~G~---~~~~Ii~~g~~k~~~~l~~a~~-~gv~i~vDs~ 191 (471)
+++++.++|+.+... ++.+.+.|+ .|.++..+|+...++.+. ++-.+.+.|+..+ +.++.+++ .++..+|||+
T Consensus 30 ~v~l~AVvKahga~~-i~~~~~~G~~~fgen~vqEa~~kr~~~~~~~~~i~wh~iG~lq~-nk~~~~v~~~~~i~sVds~ 107 (244)
T 3r79_A 30 DVALVAVSKTFDAEA-IQPVIDAGQRVFGENRVQEAQGKWPALKEKTSDIELHLIGPLQS-NKAADAVALFDVVESIDRE 107 (244)
T ss_dssp GSEEEEECTTCCHHH-HHHHHHTTCCEEEESCHHHHHHHHHHHHHHSTTCEEEECSCCCG-GGHHHHHHHCSEEEEECSH
T ss_pred CcEEEEEECCcCHHH-HHHHHHCCCCEEEEeeHHHHHHHHHhccccCCCeEEEecCCCCH-HHHHHHHHHCCEEEeeCCH
Confidence 468999999988755 477889998 899999999998777653 2334578888654 55777774 6888999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCC
Q 012098 192 FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~ 271 (471)
+.++.|.+.+.+.|++++|+|+||+ |++++|+|+.++++.++++.+..++ ++++.||++|.+.. .+
T Consensus 108 ~~a~~L~~~a~~~g~~~~V~LqVdt------------G~e~~R~Gv~~ee~~~l~~~i~~l~-~L~l~GlmTh~a~~-dd 173 (244)
T 3r79_A 108 KIARALSEECARQGRSLRFYVQVNT------------GLEPQKAGIDPRETVAFVAFCRDEL-KLPVEGLMCIPPAE-EN 173 (244)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEBCT------------TCCTTSCSBCHHHHHHHHHHHHHTS-CCCCCEEECCCCTT-SC
T ss_pred HHHHHHHHHHHHcCCCceEEEEEEC------------CCCcCCCCCCHHHHHHHHHHHHcCC-CCEEEEEEecCCCC-CC
Confidence 9999999999999999999999985 4569999999999999999999998 99999999998654 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 272 VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
++ ..++.+.++.+.+ .+..|++|.
T Consensus 174 ~~---~~f~~l~~l~~~l-----~~~~lSmGm 197 (244)
T 3r79_A 174 PG---PHFALLAKLAGQC-----GLEKLSMGM 197 (244)
T ss_dssp SH---HHHHHHHHHHHHH-----TCCEEECCC
T ss_pred HH---HHHHHHHHHHHhC-----CCCEEEeec
Confidence 44 3455555555544 578899874
No 42
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=83.72 E-value=4.8 Score=37.81 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=58.4
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeec-C--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEE--ecCCCCcCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHL-G--STITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN--IGGGLGIDYYH 311 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~-G--s~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ld--iGGGl~i~y~~ 311 (471)
++.+++.++.+.++++ ++.+...|.-. . -...+.+..++.++.+.+.++..++.|. +++. +++|++..|..
T Consensus 44 ~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~~~~~~~~~~~ 119 (294)
T 3vni_A 44 YSDIQINELKACAHGN--GITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDV--HLIGGALYSYWPIDYTK 119 (294)
T ss_dssp CCHHHHHHHHHHHHHT--TCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTC--CEEEESTTSCSSCCTTS
T ss_pred cCHHHHHHHHHHHHHc--CCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CeeeccccCCCCCcCCC
Confidence 3556777777888887 78887744211 0 0123555556666667777776666675 4554 56676654432
Q ss_pred CCCCCCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 312 TGAVLPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
........+.+++.++++ ..++|+++.+|+-
T Consensus 120 ~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~ 153 (294)
T 3vni_A 120 TIDKKGDWERSVESVREVAKVAEACGVDFCLEVL 153 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 111000123344444444 4468999999984
No 43
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=80.83 E-value=38 Score=31.98 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=82.8
Q ss_pred cCHHHHHHHHHCCCCCCcEEEeCC--------CCcHHH--------HHHHHhCCCEEE-------------eCCHHHHHH
Q 012098 146 VSGNELRLALRAGFDPTKCIFNGN--------GKLLED--------LVLAAQEGVFVN-------------VDSEFDLEN 196 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii~~g~--------~k~~~~--------l~~a~~~gv~i~-------------vDs~~el~~ 196 (471)
.+...++.+.++|++.-.|...+. .++.++ ++.|.+.|+.+. -.+.+++..
T Consensus 80 ~n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~ 159 (295)
T 1ydn_A 80 PNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVAS 159 (295)
T ss_dssp SSHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHH
Confidence 567778888888886333332232 223222 344556787542 247888888
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHH
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFR 276 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~ 276 (471)
+.+.+.+.|.. .|.+... .| ..++++..++++.+++.- .-...++|+|-.+... .....
T Consensus 160 ~~~~~~~~G~d---~i~l~Dt----------~G------~~~P~~~~~lv~~l~~~~-~~~~l~~H~Hn~~Gla-~an~l 218 (295)
T 1ydn_A 160 VTEQLFSLGCH---EVSLGDT----------IG------RGTPDTVAAMLDAVLAIA-PAHSLAGHYHDTGGRA-LDNIR 218 (295)
T ss_dssp HHHHHHHHTCS---EEEEEET----------TS------CCCHHHHHHHHHHHHTTS-CGGGEEEEEBCTTSCH-HHHHH
T ss_pred HHHHHHhcCCC---EEEecCC----------CC------CcCHHHHHHHHHHHHHhC-CCCeEEEEECCCcchH-HHHHH
Confidence 88877788764 2333211 12 146888899999887642 2123689999876532 11111
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEec-CCCC-cCCCCCCCCCCCHHHHHHHHH
Q 012098 277 DAAVLMVNYIDKIRAQGFEVDYLNIG-GGLG-IDYYHTGAVLPKPRNLIDTVR 327 (471)
Q Consensus 277 ~~~~~~~~~~~~l~~~g~~l~~ldiG-GGl~-i~y~~~~~~~~~~~~~~~~i~ 327 (471)
.+ + +.|. +.+|.. +|+| -+|..........++++..++
T Consensus 219 ~A----------i-~aG~--~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~ 258 (295)
T 1ydn_A 219 VS----------L-EKGL--RVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLH 258 (295)
T ss_dssp HH----------H-HHTC--CEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHH
T ss_pred HH----------H-HhCC--CEEEeccccCCCCCCCCCCcCChhHHHHHHHHH
Confidence 11 1 1244 577765 6676 466543333345666666554
No 44
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.22 E-value=45 Score=31.74 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=83.9
Q ss_pred cCHHHHHHHHHCCCCCCcEE-EeCCC---------Cc--------HHHHHHHHhCCCEEE------e-------CCHHHH
Q 012098 146 VSGNELRLALRAGFDPTKCI-FNGNG---------KL--------LEDLVLAAQEGVFVN------V-------DSEFDL 194 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii-~~g~~---------k~--------~~~l~~a~~~gv~i~------v-------Ds~~el 194 (471)
.+...++.+.++|++ .|. |.+.. ++ .+-++.|.+.|+.+. + -+.+++
T Consensus 84 ~~~~~i~~a~~aG~~--~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~ 161 (302)
T 2ftp_A 84 PNLKGFEAALESGVK--EVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQV 161 (302)
T ss_dssp CSHHHHHHHHHTTCC--EEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHH
T ss_pred CCHHHHHHHHhCCcC--EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHH
Confidence 578889999999985 343 33331 11 223455556787652 1 256777
Q ss_pred HHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHH
Q 012098 195 ENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDI 274 (471)
Q Consensus 195 ~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~ 274 (471)
..+.+.+.+.|.. .|.+.- |-| ...+.+..++++.+++.-.++ ..++|+|-.++.. ...
T Consensus 162 ~~~~~~~~~~G~d---~i~l~D-----------T~G-----~~~P~~~~~lv~~l~~~~~~~-~l~~H~Hn~~Gla-~An 220 (302)
T 2ftp_A 162 AWVARELQQMGCY---EVSLGD-----------TIG-----VGTAGATRRLIEAVASEVPRE-RLAGHFHDTYGQA-LAN 220 (302)
T ss_dssp HHHHHHHHHTTCS---EEEEEE-----------SSS-----CCCHHHHHHHHHHHTTTSCGG-GEEEEEBCTTSCH-HHH
T ss_pred HHHHHHHHHcCCC---EEEEeC-----------CCC-----CcCHHHHHHHHHHHHHhCCCC-eEEEEeCCCccHH-HHH
Confidence 7777766677764 233331 111 146888888898887641023 5689999876542 111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEec-CCCCc-CCCCCCCCCCCHHHHHHHHHH
Q 012098 275 FRDAAVLMVNYIDKIRAQGFEVDYLNIG-GGLGI-DYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 275 ~~~~~~~~~~~~~~l~~~g~~l~~ldiG-GGl~i-~y~~~~~~~~~~~~~~~~i~~ 328 (471)
...+ + +.| .+.+|.. +|+|- ||...+......++++..++.
T Consensus 221 ~laA----------v-~aG--a~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~ 263 (302)
T 2ftp_A 221 IYAS----------L-LEG--IAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNG 263 (302)
T ss_dssp HHHH----------H-HTT--CCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHH
T ss_pred HHHH----------H-HhC--CCEEEecccccCCCCCCCCCCCChhHHHHHHHHHh
Confidence 1111 1 234 4678866 67764 665443333456676665553
No 45
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=76.56 E-value=8.5 Score=35.47 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC-CCCCCCCCCCHH
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID-YYHTGAVLPKPR 320 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~-y~~~~~~~~~~~ 320 (471)
+.++.+.++++ ++.+.++|+...-...+.+..++.++.+.+.++..++.|. ++|.+-+|.... +.. + ...+
T Consensus 48 ~~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~v~~~~g~~~~~~~~-~---~~~~ 119 (278)
T 1i60_A 48 LDDLAEYFQTH--HIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGV--KYVVAVPLVTEQKIVK-E---EIKK 119 (278)
T ss_dssp HHHHHHHHHTS--SCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTC--CEEEEECCBCSSCCCH-H---HHHH
T ss_pred HHHHHHHHHHc--CCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecCCCCCCCCH-H---HHHH
Confidence 44455566666 7999988876421113555555566666677776666675 455554443211 100 0 0133
Q ss_pred HHHHHHHHH---HhcCCcEEEEcccc
Q 012098 321 NLIDTVREL---VLSRNLNLIIEPGR 343 (471)
Q Consensus 321 ~~~~~i~~~---~~~~~~~l~~EpGR 343 (471)
.+.+.++++ ..++|+++.+|+-.
T Consensus 120 ~~~~~l~~l~~~a~~~gv~l~lEn~~ 145 (278)
T 1i60_A 120 SSVDVLTELSDIAEPYGVKIALEFVG 145 (278)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 444545444 44679999999854
No 46
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=75.96 E-value=15 Score=34.88 Aligned_cols=92 Identities=5% Similarity=-0.082 Sum_probs=48.6
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHH
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR 320 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~ 320 (471)
++.++.+.++++ ++.+.++|+-..-...+.....+..+.+.+.++..++.|. ++|.++|. +-. .. ...++
T Consensus 77 ~~~~l~~~l~~~--GL~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~~-~~~--~~---~~~~~ 146 (305)
T 3obe_A 77 ASKDYKKMVDDA--GLRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGV--SCMVQPSL-PRI--EN---EDDAK 146 (305)
T ss_dssp CHHHHHHHHHHT--TCEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTC--SEEEECCC-CCC--SS---HHHHH
T ss_pred CHHHHHHHHHHC--CCeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCC--CEEEeCCC-CCC--CC---HHHHH
Confidence 556666666776 7999888753311112233233334444455555555564 56666542 211 00 01234
Q ss_pred HHHHHHHHH---HhcCCcEEEEccc
Q 012098 321 NLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 321 ~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
.+++.++++ ..++|+++.+|+=
T Consensus 147 ~~~~~l~~l~~~a~~~Gv~l~lEn~ 171 (305)
T 3obe_A 147 VVSEIFNRAGEITKKAGILWGYHNH 171 (305)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecC
Confidence 445555444 4578999999974
No 47
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=75.32 E-value=9.3 Score=35.83 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=58.3
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeec--CC--CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHL--GS--TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~--Gs--~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~ 311 (471)
.++.+++.++.+.++++ ++.+.++|+.. +- ...+.+..++.++.+.+.++..++.|. ++|.+.|+.. .+.
T Consensus 62 ~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~--~~v~~~~~~~-~~~- 135 (295)
T 3cqj_A 62 DWSREQRLALVNAIVET--GVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGI--RVIQLAGYDV-YYQ- 135 (295)
T ss_dssp GCCHHHHHHHHHHHHHH--CCEEEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CEEEECCCSC-SSS-
T ss_pred cCCHHHHHHHHHHHHHc--CCeEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECCCCC-CcC-
Confidence 45667777777777777 79998887521 11 123455555666667777776666675 4566654422 111
Q ss_pred CCCCCCCHHHHHHHHHHH---HhcCCcEEEEcccc
Q 012098 312 TGAVLPKPRNLIDTVREL---VLSRNLNLIIEPGR 343 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~---~~~~~~~l~~EpGR 343 (471)
. ......+.+.+.++++ ..++|+++.+|+-.
T Consensus 136 ~-~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~ 169 (295)
T 3cqj_A 136 E-ANNETRRRFRDGLKESVEMASRAQVTLAMEIMD 169 (295)
T ss_dssp C-CCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCC
Confidence 1 0001233445555544 34579999999954
No 48
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=72.39 E-value=16 Score=33.97 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=57.6
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC-------------CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST-------------ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~-------------~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
++.+++.++.+.++++ ++.+..+++|...+ ..+.+..++.++.+.+.++..++.|. ++|.+..
T Consensus 48 ~~~~~~~~~~~~l~~~--gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~ 123 (290)
T 3tva_A 48 RTREHAQAFRAKCDAA--GIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGC--PAIGLHI 123 (290)
T ss_dssp CSHHHHHHHHHHHHHT--TCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTC--SEEEECC
T ss_pred CCHHHHHHHHHHHHHc--CCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 4566777777888887 79999988763211 11333344555666666666666665 5666654
Q ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 304 GLGIDYYHTGAVLPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 304 Gl~i~y~~~~~~~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
|.. +. + .....+.+.+.++++ ..++|+++.+|+-
T Consensus 124 G~~-~~---~-~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 160 (290)
T 3tva_A 124 GFV-PE---S-SSPDYSELVRVTQDLLTHAANHGQAVHLETG 160 (290)
T ss_dssp CCC-CC---T-TSHHHHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred CCC-cc---c-chHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 431 11 1 111244455555544 4578999999995
No 49
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=72.18 E-value=13 Score=34.59 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecCCC--CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCC-CCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLGST--ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTG-AVL 316 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~Gs~--~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~-~~~ 316 (471)
+++.++.+.++++ ++.+.++|...... ..+++..++.++.+.+.++..++.|. ++|.+..|++. +.... ...
T Consensus 64 ~~~~~~~~~l~~~--gl~v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa--~~v~~~~g~~~-~~~~~p~~~ 138 (287)
T 3kws_A 64 GRVNEIKQALNGR--NIKVSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGS--TGVIIVPAFNG-QVPALPHTM 138 (287)
T ss_dssp GGHHHHHHHHTTS--SCEECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTC--SEEEECSCCTT-CCSBCCSSH
T ss_pred HHHHHHHHHHHHc--CCeEEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecCcCC-cCCCCCCHH
Confidence 4566666667666 79998887532111 23555566666777777777667665 46766666542 11000 000
Q ss_pred CCHHHHHHHHHH---HHhcCCcEEEEccc
Q 012098 317 PKPRNLIDTVRE---LVLSRNLNLIIEPG 342 (471)
Q Consensus 317 ~~~~~~~~~i~~---~~~~~~~~l~~EpG 342 (471)
...+.+.+.+++ ...++|+++.+|+-
T Consensus 139 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 167 (287)
T 3kws_A 139 ETRDFLCEQFNEMGTFAAQHGTSVIFEPL 167 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 013334444444 34578999999963
No 50
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.67 E-value=32 Score=32.80 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred cHHHHHHHHhCCCE-EEe-CCH-----------------HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCC
Q 012098 172 LLEDLVLAAQEGVF-VNV-DSE-----------------FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232 (471)
Q Consensus 172 ~~~~l~~a~~~gv~-i~v-Ds~-----------------~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~ 232 (471)
..+.++.|++.|+. +.+ ++. +.+..+.+.+++.|..+..-| -...+. ...
T Consensus 85 ~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l--~~~~~~---------e~~ 153 (302)
T 2ftp_A 85 NLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYI--SCVLGC---------PYD 153 (302)
T ss_dssp SHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEE--ECTTCB---------TTT
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EEEeeC---------CcC
Confidence 67899999999973 433 433 334666677777776433222 111100 001
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHH
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRD 277 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~ 277 (471)
+ -.+++++.++++.+.+. +...+.|.--.|. ..+....+
T Consensus 154 ~--~~~~~~~~~~~~~~~~~--G~d~i~l~DT~G~--~~P~~~~~ 192 (302)
T 2ftp_A 154 G--DVDPRQVAWVARELQQM--GCYEVSLGDTIGV--GTAGATRR 192 (302)
T ss_dssp B--CCCHHHHHHHHHHHHHT--TCSEEEEEESSSC--CCHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHc--CCCEEEEeCCCCC--cCHHHHHH
Confidence 1 14678899999888877 5666666655554 35654433
No 51
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=69.10 E-value=47 Score=31.39 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=52.3
Q ss_pred cHHHHHHHHhCCC-EEEeC------------------CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCC
Q 012098 172 LLEDLVLAAQEGV-FVNVD------------------SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232 (471)
Q Consensus 172 ~~~~l~~a~~~gv-~i~vD------------------s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~ 232 (471)
..+.++.+++.|+ .+.++ +++.+....+.+++.|..+..- |....+ ..
T Consensus 81 n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~--l~~~~~-----------~e 147 (295)
T 1ydn_A 81 NMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGY--VSCVVE-----------CP 147 (295)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEE--EECSSE-----------ET
T ss_pred CHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEE--EEEEec-----------CC
Confidence 4688999999987 34443 4556666677788777654322 321110 00
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHH
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDA 278 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~ 278 (471)
.-.-.+++++.++++.+.+. +...+.+.--.|. ..+..+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--G~d~i~l~Dt~G~--~~P~~~~~l 189 (295)
T 1ydn_A 148 YDGPVTPQAVASVTEQLFSL--GCHEVSLGDTIGR--GTPDTVAAM 189 (295)
T ss_dssp TTEECCHHHHHHHHHHHHHH--TCSEEEEEETTSC--CCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhc--CCCEEEecCCCCC--cCHHHHHHH
Confidence 00124678899998887776 4666556544443 456544433
No 52
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=68.89 E-value=84 Score=30.16 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHHCC-CCCCcEEEeCCCC---cHHHHHHHHhCCCE-EEeCCHHH--HHHHHH-HHHHcC-CceEEEEEEecCCCCC
Q 012098 151 LRLALRAG-FDPTKCIFNGNGK---LLEDLVLAAQEGVF-VNVDSEFD--LENIVV-ASRIAG-KKVNVLLRINPDVDPQ 221 (471)
Q Consensus 151 l~~a~~~G-~~~~~Ii~~g~~k---~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~-~a~~~g-~~~~V~lRin~~~~~~ 221 (471)
+..+++.| +++.++++.|.-. ++++.+.+.+.|+. +..+.+.+ ++.+.+ +.+..+ ..-.|.|=++.+.-..
T Consensus 172 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDiDvLDp 251 (322)
T 3m1r_A 172 FRRLLDEEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDMDVLDQ 251 (322)
T ss_dssp HHHHHHTTSSCGGGEEEEEECTTSSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCT
T ss_pred HHHHHhccCCCCceEEEEeeCCCCCCHHHHHHHHHCCCEEEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEeecccCh
Confidence 44455544 4567888888543 67888888889986 55554443 122222 212221 2225677776543211
Q ss_pred C-CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 222 V-HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 222 ~-~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
. -+ .|| .....|++..|+..+++.+... -+++|+..-
T Consensus 252 a~aP--gtg-tp~pgGlt~~e~~~il~~l~~~---~~vvg~Div 289 (322)
T 3m1r_A 252 SHAP--GCP-AIGPGGLYTDELLEAVKYIAQQ---PNVAGIEIV 289 (322)
T ss_dssp TTCT--TSS-SCCSSCBCHHHHHHHHHHHHTS---TTEEEEEEE
T ss_pred hhCC--CCC-CCCCCCCCHHHHHHHHHHHhcc---CCEEEEEEE
Confidence 1 11 122 3567899999999999998754 367777764
No 53
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=68.34 E-value=12 Score=34.29 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCCceEEEEEeecCC-------CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCC
Q 012098 244 WFLDAVKAHPNELKLVGAHCHLGS-------TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVL 316 (471)
Q Consensus 244 ~~l~~l~~~~~~l~l~Glh~H~Gs-------~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~ 316 (471)
++.+.++++ ++.+.++|+..+. ...+++..++.++.+.+.++..++.|. +++.+..|..-. . ....
T Consensus 44 ~~~~~l~~~--gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~v~~~~g~~~~-~--~~~~ 116 (260)
T 1k77_A 44 QIQKQLEQN--HLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNC--EQVHVMAGVVPA-G--EDAE 116 (260)
T ss_dssp HHHHHHHHT--TCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTC--SEEECCCCBCCT-T--SCHH
T ss_pred HHHHHHHHc--CCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCC--CEEEECcCCCCC-C--CCHH
Confidence 334455566 7999998875421 112334444555666666666666665 566665443110 0 0000
Q ss_pred CCHHHHHHHHHH---HHhcCCcEEEEccc
Q 012098 317 PKPRNLIDTVRE---LVLSRNLNLIIEPG 342 (471)
Q Consensus 317 ~~~~~~~~~i~~---~~~~~~~~l~~EpG 342 (471)
...+.+.+.+++ ...++|+++.+|+-
T Consensus 117 ~~~~~~~~~l~~l~~~a~~~gv~l~~E~~ 145 (260)
T 1k77_A 117 RYRAVFIDNIRYAADRFAPHGKRILVEAL 145 (260)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 012334444444 34568999999985
No 54
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=68.22 E-value=45 Score=30.32 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHH
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR 320 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~ 320 (471)
++.++.+.++++ ++.+.++|+...-...+ +..++.++ +.++..++.|. ++|.+.+|..-. ...+
T Consensus 52 ~~~~~~~~~~~~--gl~~~~~~~~~~~~~~~-~~~~~~~~---~~i~~a~~lG~--~~v~~~~g~~~~--------~~~~ 115 (272)
T 2q02_A 52 NYNQVRNLAEKY--GLEIVTINAVYPFNQLT-EEVVKKTE---GLLRDAQGVGA--RALVLCPLNDGT--------IVPP 115 (272)
T ss_dssp CHHHHHHHHHHT--TCEEEEEEEETTTTSCC-HHHHHHHH---HHHHHHHHHTC--SEEEECCCCSSB--------CCCH
T ss_pred CHHHHHHHHHHc--CCeEEechhhhccCCcH-HHHHHHHH---HHHHHHHHhCC--CEEEEccCCCch--------hHHH
Confidence 344455556666 79999998865322223 22333333 34444444454 566665554210 1234
Q ss_pred HH-HHHHHH---HHhcCCcEEEEcccc
Q 012098 321 NL-IDTVRE---LVLSRNLNLIIEPGR 343 (471)
Q Consensus 321 ~~-~~~i~~---~~~~~~~~l~~EpGR 343 (471)
.+ .+.+++ ...++|+++.+|+-.
T Consensus 116 ~~~~~~l~~l~~~a~~~gv~l~~E~~~ 142 (272)
T 2q02_A 116 EVTVEAIKRLSDLFARYDIQGLVEPLG 142 (272)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 44 554444 445789999999853
No 55
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=68.03 E-value=85 Score=30.39 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=91.4
Q ss_pred eEEEcCcCHHHHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCC-ceEE-----E--eccc----CCcHHHHHHHHHc--
Q 012098 74 FLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN-SIIG-----Y--AIKA----NNNYKILEHLRKL-- 139 (471)
Q Consensus 74 ~l~~~~i~l~~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~-~~i~-----y--avKa----N~~~~vl~~l~~~-- 139 (471)
.+.+-.+++.|=.+.. +++ ++.+...+-++.+.++ +.. .++. + ..++ -...+.++.+.+.
T Consensus 8 ~v~i~DttlRDG~Q~~-~~~---~~~e~k~~i~~~L~~~--Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~ 81 (345)
T 1nvm_A 8 KLYISDVTLRDGSHAI-RHQ---YTLDDVRAIARALDKA--KVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEIS 81 (345)
T ss_dssp BCEEEECTTTHHHHHT-TTC---CCHHHHHHHHHHHHHH--TCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCS
T ss_pred CcEEEECCCCcccCCC-CCC---CCHHHHHHHHHHHHHc--CCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCC
Confidence 4555566777776663 554 5666666666666553 211 1221 1 1111 1234566666654
Q ss_pred CCceEEc------CHHHHHHHHHCCCCCCcEEEeCCC---CcHHHHHHHHhCCCE--EEe-----CCHHHHHHHHHHHHH
Q 012098 140 GCGAVLV------SGNELRLALRAGFDPTKCIFNGNG---KLLEDLVLAAQEGVF--VNV-----DSEFDLENIVVASRI 203 (471)
Q Consensus 140 G~g~~va------S~~El~~a~~~G~~~~~Ii~~g~~---k~~~~l~~a~~~gv~--i~v-----Ds~~el~~l~~~a~~ 203 (471)
+.-+.+- ....++.+.++|++.-+| +.... ...+.++.+.+.|+. +.+ -+.+.+..+.+.+.+
T Consensus 82 ~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I-~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~ 160 (345)
T 1nvm_A 82 HAQIATLLLPGIGSVHDLKNAYQAGARVVRV-ATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMES 160 (345)
T ss_dssp SSEEEEEECBTTBCHHHHHHHHHHTCCEEEE-EEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCcccHHHHHHHHhCCcCEEEE-EEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2222222 467888888899875433 33321 223445556667763 344 346667777777766
Q ss_pred cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 204 AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 204 ~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
.|.. .|.+.- .+| ...++++.++++.+++.-..-..+++|+|--.
T Consensus 161 ~Ga~---~i~l~D----------T~G------~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~ 205 (345)
T 1nvm_A 161 YGAT---CIYMAD----------SGG------AMSMNDIRDRMRAFKAVLKPETQVGMHAHHNL 205 (345)
T ss_dssp HTCS---EEEEEC----------TTC------CCCHHHHHHHHHHHHHHSCTTSEEEEECBCTT
T ss_pred CCCC---EEEECC----------CcC------ccCHHHHHHHHHHHHHhcCCCceEEEEECCCc
Confidence 6654 233321 122 12588888988888764101247899999643
No 56
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=67.27 E-value=19 Score=33.28 Aligned_cols=95 Identities=11% Similarity=0.064 Sum_probs=51.3
Q ss_pred HhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCC
Q 012098 239 NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPK 318 (471)
Q Consensus 239 ~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~ 318 (471)
.+++.++.+.++++ ++.+.+++.|.+... .+...+.++.+.+.++..++.|. ++|.+..|..-...... ..
T Consensus 47 ~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~g~~~~~~~~~---~~ 117 (286)
T 3dx5_A 47 YETTERELNCLKDK--TLEITMISDYLDISL--SADFEKTIEKCEQLAILANWFKT--NKIRTFAGQKGSADFSQ---QE 117 (286)
T ss_dssp HHHHHHHHHHTGGG--TCCEEEEECCCCCST--TSCHHHHHHHHHHHHHHHHHHTC--CEEEECSCSSCGGGSCH---HH
T ss_pred HHHHHHHHHHHHHc--CCeEEEEecCCCCCC--chhHHHHHHHHHHHHHHHHHhCC--CEEEEcCCCCCcccCcH---HH
Confidence 35666777777776 789988877654221 11223344444555555555564 56766555421100000 01
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 319 PRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 319 ~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
.+.+++.++++ ..++|+++.+|+-
T Consensus 118 ~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 144 (286)
T 3dx5_A 118 RQEYVNRIRMICELFAQHNMYVLLETH 144 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEecC
Confidence 33444444444 4468999999984
No 57
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=65.39 E-value=22 Score=35.02 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecC--------C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLG--------S-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDY 309 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~G--------s-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y 309 (471)
+++.++.+.++++ ++.+..+|.... + ...+.+..+.+++.+.+.++..++.|. ++|.+.+|. |..|
T Consensus 69 ~~~~~l~~~l~~~--GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa--~~vv~~~G~~g~~~ 144 (387)
T 1bxb_A 69 QIVRRFKKALDET--GLKVPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGA--EIYVVWPGREGAEV 144 (387)
T ss_dssp HHHHHHHHHHHHH--TCBCCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CEEEECCTTCEESC
T ss_pred HHHHHHHHHHHHh--CCEEEEEecCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCCCCCccC
Confidence 4566666677776 788888875331 1 123444456666666677766666675 466776663 2333
Q ss_pred CCCCCCCCCHHHHHHHHHHHH---hcC--CcEEEEccc
Q 012098 310 YHTGAVLPKPRNLIDTVRELV---LSR--NLNLIIEPG 342 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~---~~~--~~~l~~EpG 342 (471)
..........+.+.+.+++++ .++ ++++.+||-
T Consensus 145 ~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~~ 182 (387)
T 1bxb_A 145 EATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPK 182 (387)
T ss_dssp GGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 211110112344555555543 344 899999984
No 58
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=64.72 E-value=10 Score=35.26 Aligned_cols=98 Identities=21% Similarity=0.329 Sum_probs=55.3
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCC--C--CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGS--T--ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs--~--~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
++.+++.++.+.++++ ++++..+.+|..- . ..+.+...+.++.+.+.++..++.|. +++.+..|.....
T Consensus 44 ~~~~~~~~~~~~l~~~--gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~--~~v~~~~g~~~~~--- 116 (287)
T 2x7v_A 44 PSDEAATKFKREMKKH--GIDWENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGI--RYLNIHPGSHLGT--- 116 (287)
T ss_dssp CCHHHHHHHHHHHHHH--TCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CEEEECCEECTTS---
T ss_pred CCHHHHHHHHHHHHHc--CCCcceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecCCCCCC---
Confidence 4556777777777776 6775333334321 1 12445555666666666666666675 4565543332110
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCcEEEEccc
Q 012098 313 GAVLPKPRNLIDTVRELVLS-RNLNLIIEPG 342 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~EpG 342 (471)
......+.+.+.+++++.. +|+++.+|+-
T Consensus 117 -~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~ 146 (287)
T 2x7v_A 117 -GEEEGIDRIVRGLNEVLNNTEGVVILLENV 146 (287)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred -CHHHHHHHHHHHHHHHHcccCCCEEEEeCC
Confidence 0001234566677777654 6899999984
No 59
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=62.43 E-value=42 Score=33.93 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEe----ec---------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHC----HL---------GS-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL 305 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~----H~---------Gs-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl 305 (471)
+++.++.+.++++ ++.+.+++. |. |+ ...|.+..+.+++.+.+.++...+.|.+. +++-+|-
T Consensus 107 ~d~~~lk~~l~e~--GL~l~~i~~~~f~hp~~~~~~Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~--lv~w~Gd 182 (438)
T 3m0m_A 107 ADPKELKARGDAL--GLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKA--LTVWIGD 182 (438)
T ss_dssp CCHHHHHHHHHHH--TCEEEEEECCCSSCCTTCSSCCTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCE--EEECCCC
T ss_pred HHHHHHHHHHHHc--CCceEEeecccccCchhcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCE--EEEECCC
Confidence 3455555566666 688877665 32 21 12456667777887888777777777653 5554432
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHHHhc--CCcEEEEcc
Q 012098 306 GIDYYHTGAVLPKPRNLIDTVRELVLS--RNLNLIIEP 341 (471)
Q Consensus 306 ~i~y~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~Ep 341 (471)
|..|..........+.+.+.+++++.. .++++.+||
T Consensus 183 G~~~~~~~d~~~a~~rl~esL~ei~~~A~~gv~l~LE~ 220 (438)
T 3m0m_A 183 GSNFPGQSNFTRAFERYLSAMAEIYKGLPDDWKLFSEH 220 (438)
T ss_dssp EESSTTTSCHHHHHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred ccCCCCcCCHHHHHHHHHHHHHHHHHhhhcCCEEEEcc
Confidence 222321100000134566777776653 478999997
No 60
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=62.08 E-value=9.9 Score=34.98 Aligned_cols=94 Identities=19% Similarity=0.092 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCC-CCcCCCCCCCCCCCH
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG-LGIDYYHTGAVLPKP 319 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGG-l~i~y~~~~~~~~~~ 319 (471)
++.++.+.++++ ++.+.+++.+..-...+.+..++.++.+.+.++..++.|.+ +|.+..| .+-.. .......
T Consensus 46 ~~~~~~~~l~~~--gl~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~g~~~~~~---~~~~~~~ 118 (275)
T 3qc0_A 46 GLGEAGRIVRAN--GLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGAD--CLVLVAGGLPGGS---KNIDAAR 118 (275)
T ss_dssp CHHHHHHHHHHH--TCEESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCS--CEEEECBCCCTTC---CCHHHHH
T ss_pred CHHHHHHHHHHc--CCceEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeeCCCCCCC---cCHHHHH
Confidence 345555566666 68888887653212235556666677777777777777765 3444433 22100 0000012
Q ss_pred HHHHHHHHHH---HhcCCcEEEEcc
Q 012098 320 RNLIDTVREL---VLSRNLNLIIEP 341 (471)
Q Consensus 320 ~~~~~~i~~~---~~~~~~~l~~Ep 341 (471)
+.+++.++++ ..++|+++.+||
T Consensus 119 ~~~~~~l~~l~~~a~~~gv~l~lE~ 143 (275)
T 3qc0_A 119 RMVVEGIAAVLPHARAAGVPLAIEP 143 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeE
Confidence 3344444443 346799999998
No 61
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=61.46 E-value=1.1e+02 Score=29.08 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=60.9
Q ss_pred HHHHHHCC-CCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHH---HHHHHHHHHHcCCceEEEEEEecCCCC-C
Q 012098 151 LRLALRAG-FDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFD---LENIVVASRIAGKKVNVLLRINPDVDP-Q 221 (471)
Q Consensus 151 l~~a~~~G-~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~e---l~~l~~~a~~~g~~~~V~lRin~~~~~-~ 221 (471)
+..++..+ +.+.+++..|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+..+..+. .|.|=++.+.-. .
T Consensus 166 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~~v~~~l~~~~~~~~~--~vylS~DiDvLDpa 243 (316)
T 2a0m_A 166 FRQLLEESSFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDAFGLTGK--NTFFSFDVDSLKSS 243 (316)
T ss_dssp HHHHHTCTTCCGGGEEEEEECTTTSCHHHHHHHHHTTCEEEEHHHHHHHCHHHHHHHHHHHHCS--SEEEEEEGGGBBTT
T ss_pred HHHHHHhccCCCceEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHhhhHHHHHHHHHHhhCCC--eEEEEEccccCccc
Confidence 44555433 356788777742 235778888888986 55544432 1233333222222 456666543321 1
Q ss_pred CCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 222 VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 222 ~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.-+ .|| .....|++..|+..+++.+.+. .+++|+..-
T Consensus 244 ~aP--gtg-tp~pGGlt~~e~~~il~~l~~~---~~vvg~Div 280 (316)
T 2a0m_A 244 DMP--GVS-CPAAVGLSAQEAFDMCFLAGKT---PTVMMMDMS 280 (316)
T ss_dssp TCC--CBS-SCBSSCBCHHHHHHHHHHHHHC---TTEEEEEEE
T ss_pred cCC--CCC-CCCCCCCCHHHHHHHHHHHHcC---CCEEEEEEE
Confidence 111 122 4678899999999999988653 467787664
No 62
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=61.00 E-value=16 Score=33.80 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCCCceEEEEEeecCCC-------CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCC
Q 012098 243 QWFLDAVKAHPNELKLVGAHCHLGST-------ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAV 315 (471)
Q Consensus 243 ~~~l~~l~~~~~~l~l~Glh~H~Gs~-------~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~ 315 (471)
.++.+.++++ ++.+.++|+..+.- ..+++..++.++.+.+.++..++.|. ++|.+..|.+.... .
T Consensus 51 ~~~~~~l~~~--gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa--~~v~~~~g~~~~~~--~-- 122 (269)
T 3ngf_A 51 DVIARELKQH--NLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDC--RTLHAMSGITEGLD--R-- 122 (269)
T ss_dssp HHHHHHHHHT--TCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTC--CEEECCBCBCTTSC--H--
T ss_pred HHHHHHHHHc--CCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCC--CEEEEccCCCCCCC--H--
Confidence 3444555566 79999888654310 12333344555556666666666665 56666555221110 0
Q ss_pred CCCHHHHHHHHHHH---HhcCCcEEEEcc
Q 012098 316 LPKPRNLIDTVREL---VLSRNLNLIIEP 341 (471)
Q Consensus 316 ~~~~~~~~~~i~~~---~~~~~~~l~~Ep 341 (471)
...++.+++.++++ ..++|+++.+||
T Consensus 123 ~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 151 (269)
T 3ngf_A 123 KACEETFIENFRYAADKLAPHGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 00133444444444 456899999997
No 63
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=59.92 E-value=46 Score=32.37 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=35.9
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
+.++.+..|....|++|+++.. ...-|.+.++..++++.+++. ++.+ ||.|.|
T Consensus 209 v~aVR~avG~d~pV~vRls~~~-------------~~~~g~~~~~~~~la~~L~~~--Gvd~--i~vs~g 261 (349)
T 3hgj_A 209 AQAVREVVPRELPLFVRVSATD-------------WGEGGWSLEDTLAFARRLKEL--GVDL--LDCSSG 261 (349)
T ss_dssp HHHHHHHSCTTSCEEEEEESCC-------------CSTTSCCHHHHHHHHHHHHHT--TCCE--EEEECC
T ss_pred HHHHHHHhcCCceEEEEecccc-------------ccCCCCCHHHHHHHHHHHHHc--CCCE--EEEecC
Confidence 3333344576778999999752 122378888988888988876 5665 566654
No 64
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=59.70 E-value=61 Score=31.46 Aligned_cols=132 Identities=16% Similarity=-0.002 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCC-ceEE-----------------cCHHHHHHHHHCCCCCCcEEEe-CCC-CcHHHHHHHHhCCCE--EE
Q 012098 130 YKILEHLRKLGC-GAVL-----------------VSGNELRLALRAGFDPTKCIFN-GNG-KLLEDLVLAAQEGVF--VN 187 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~v-----------------aS~~El~~a~~~G~~~~~Ii~~-g~~-k~~~~l~~a~~~gv~--i~ 187 (471)
..+++.|.+.|+ -+|+ .+..|....+....+...|... -|+ ...+.++.|.+.|+. .+
T Consensus 33 ~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 33 RAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp HHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 567888888887 5677 4566655444333443455433 221 246788888888862 22
Q ss_pred eCCH---HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 188 VDSE---FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 188 vDs~---~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.++. ++++...+.+++.|..+.+.+- . . +..+++.+.++++.+.+. +...+.+.=-
T Consensus 113 ~~~~s~~~~~~~~i~~ak~~G~~v~~~~~----~-------------a--~~~~~e~~~~ia~~~~~~--Ga~~i~l~DT 171 (345)
T 1nvm_A 113 ATHCTEADVSKQHIEYARNLGMDTVGFLM----M-------------S--HMIPAEKLAEQGKLMESY--GATCIYMADS 171 (345)
T ss_dssp EEETTCGGGGHHHHHHHHHHTCEEEEEEE----S-------------T--TSSCHHHHHHHHHHHHHH--TCSEEEEECT
T ss_pred EEeccHHHHHHHHHHHHHHCCCEEEEEEE----e-------------C--CCCCHHHHHHHHHHHHHC--CCCEEEECCC
Confidence 2333 6777777888887765444331 0 1 235678888888888776 4666666544
Q ss_pred cCCCCCCHHHHHHHHHHHHH
Q 012098 265 LGSTITKVDIFRDAAVLMVN 284 (471)
Q Consensus 265 ~Gs~~~~~~~~~~~~~~~~~ 284 (471)
.|. ..+..+.+.++.+.+
T Consensus 172 ~G~--~~P~~v~~lv~~l~~ 189 (345)
T 1nvm_A 172 GGA--MSMNDIRDRMRAFKA 189 (345)
T ss_dssp TCC--CCHHHHHHHHHHHHH
T ss_pred cCc--cCHHHHHHHHHHHHH
Confidence 554 346655555544433
No 65
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=58.62 E-value=57 Score=30.81 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=63.1
Q ss_pred HHHHHHHHcCC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCEEEe-CC---------------
Q 012098 131 KILEHLRKLGC--GAVLVSGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVFVNV-DS--------------- 190 (471)
Q Consensus 131 ~vl~~l~~~G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~i~v-Ds--------------- 190 (471)
++++.+.+.++ .+|......++.|+++|. .|+..-.+ ..++.++.+.++|+.+++ ..
T Consensus 71 pvi~~l~~~~~piSIDT~~~~va~aAl~aGa---~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~ 147 (280)
T 1eye_A 71 PVVKELAAQGITVSIDTMRADVARAALQNGA---QMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYG 147 (280)
T ss_dssp HHHHHHHHTTCCEEEECSCHHHHHHHHHTTC---CEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCS
T ss_pred HHHHHhhcCCCEEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchh
Confidence 45566655464 788888999999999986 47765443 256677788888864322 21
Q ss_pred ------HHHHHHHHHHHHHcCCce-EEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHH
Q 012098 191 ------EFDLENIVVASRIAGKKV-NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVK 250 (471)
Q Consensus 191 ------~~el~~l~~~a~~~g~~~-~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~ 250 (471)
.+.++...+.+.+.|.+. +|. ++|+. -||=+.++-.++++.+.
T Consensus 148 dv~~~v~~~l~~~i~~a~~~Gi~~~~Ii--lDPg~---------------Gf~k~~~~n~~ll~~l~ 197 (280)
T 1eye_A 148 NVVAEVRADLLASVADAVAAGVDPARLV--LDPGL---------------GFAKTAQHNWAILHALP 197 (280)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEE--EECCT---------------TSSCCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhEE--EECCC---------------CcccCHHHHHHHHHHHH
Confidence 566667777777777542 443 45541 15556666666665544
No 66
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=58.56 E-value=50 Score=32.39 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=33.7
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
..+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.++
T Consensus 17 ~~~ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~s--PvIlq~s~g 63 (358)
T 1dos_A 17 VQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKA--PVIVQFSNG 63 (358)
T ss_dssp HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTC--CEEEEECHH
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECChh
Confidence 345567777766 43 899999999999999998765 577887643
No 67
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=57.73 E-value=1.1e+02 Score=27.86 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred EEEecccCCcHHHHHHHHHc--CC--ceE-EcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE--EEeCCHH
Q 012098 120 IGYAIKANNNYKILEHLRKL--GC--GAV-LVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF--VNVDSEF 192 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~~--G~--g~~-vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~--i~vDs~~ 192 (471)
+-...++-...+.++.+.+. +. |.. |-+..+++.|.++|. +++.+ |+.+++-++.+.++|+. .-+.+.+
T Consensus 63 iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA---~fIvs-P~~~~~vi~~~~~~gi~~ipGv~Tpt 138 (232)
T 4e38_A 63 AEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGA---TFVVS-PGFNPNTVRACQEIGIDIVPGVNNPS 138 (232)
T ss_dssp EEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTC---SEEEC-SSCCHHHHHHHHHHTCEEECEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCC---CEEEe-CCCCHHHHHHHHHcCCCEEcCCCCHH
Confidence 34455554444555555542 11 221 446777777777775 34443 34566666666666654 3556666
Q ss_pred HHHHH
Q 012098 193 DLENI 197 (471)
Q Consensus 193 el~~l 197 (471)
|+..-
T Consensus 139 Ei~~A 143 (232)
T 4e38_A 139 TVEAA 143 (232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 68
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=57.65 E-value=16 Score=33.78 Aligned_cols=99 Identities=9% Similarity=0.102 Sum_probs=56.7
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeecCCC----CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHLGST----ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~----~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
++.+++.++.+.++++ ++++..+.+|..-. ..+.+..++.++.+.+.++..++.|. +++.+..|........
T Consensus 44 ~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa--~~v~~~~g~~~~~~~~ 119 (285)
T 1qtw_A 44 LTTQTIDEFKAACEKY--HYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGL--SLLNFHPGSHLMQISE 119 (285)
T ss_dssp CCHHHHHHHHHHHHHT--TCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--CEEEECCCBCTTTSCH
T ss_pred CCHHHHHHHHHHHHHc--CCCceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECcCCCCCCCCH
Confidence 4566777777777777 57753334453211 13455566667777777777777775 4566654432110000
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCcEEEEccc
Q 012098 313 GAVLPKPRNLIDTVRELVLS-RNLNLIIEPG 342 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~EpG 342 (471)
+ ...+.+++.+++.+.. +|+++.+|+-
T Consensus 120 ~---~~~~~~~~~l~~l~a~~~gv~l~lEn~ 147 (285)
T 1qtw_A 120 E---DCLARIAESINIALDKTQGVTAVIENT 147 (285)
T ss_dssp H---HHHHHHHHHHHHHHHHCSSCEEEEECC
T ss_pred H---HHHHHHHHHHHHHHhccCCCEEEEecC
Confidence 0 1134456666666543 7899999984
No 69
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=57.20 E-value=23 Score=34.89 Aligned_cols=44 Identities=20% Similarity=0.257 Sum_probs=33.9
Q ss_pred CcHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 171 KLLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 171 k~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
...+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.+
T Consensus 19 ~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~s--PvIlq~s~ 65 (357)
T 3qm3_A 19 ELNKIYDYAKAEGFAIPAVNVVGTDSINAVLEAAKKVNS--PVIIQFSN 65 (357)
T ss_dssp GHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTS--CEEEEECH
T ss_pred HHHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcCh
Confidence 3456677777665 43 899999999999999998764 57788764
No 70
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=56.70 E-value=1e+02 Score=26.93 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=30.1
Q ss_pred EEecccCCcHHHHHHHHHc---CC--ce-EEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCC
Q 012098 121 GYAIKANNNYKILEHLRKL---GC--GA-VLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV 184 (471)
Q Consensus 121 ~yavKaN~~~~vl~~l~~~---G~--g~-~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv 184 (471)
-.+..+......++.+++. +. |+ .+.+..|++.+.++|.+ -| + +++.+.+-++.+.+.|+
T Consensus 40 ev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad--~i-v-~~~~~~~~~~~~~~~g~ 105 (205)
T 1wa3_A 40 EITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAE--FI-V-SPHLDEEISQFCKEKGV 105 (205)
T ss_dssp EEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCS--EE-E-CSSCCHHHHHHHHHHTC
T ss_pred EEeCCChhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCC--EE-E-cCCCCHHHHHHHHHcCC
Confidence 3344443333445555543 23 33 23578888888888863 33 3 44444333333333343
No 71
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=56.06 E-value=22 Score=35.14 Aligned_cols=99 Identities=22% Similarity=0.226 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeec--------CC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCC-CCcCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHL--------GS-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG-LGIDY 309 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~--------Gs-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGG-l~i~y 309 (471)
+++.++.+.++++ ++.+..+|... |+ ...+.+..+.+++.+.+.++..++.|. ++|.+-+| .|.+|
T Consensus 69 ~~~~~l~~~l~~~--GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~~~~~~i~~A~~LGa--~~vv~~~G~~g~~~ 144 (393)
T 1xim_A 69 GIIAGFKKALDET--GLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGA--KTLVLWGGREGAEY 144 (393)
T ss_dssp HHHHHHHHHHHHH--TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--CEEEEECTTSEESS
T ss_pred HHHHHHHHHHHHh--CCEEEEEecCCcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCCCCCCcC
Confidence 4566666677776 78887777632 11 123444556666777777776666675 45555443 33333
Q ss_pred CCCCCCCCCHHHHHHHHHHHH---hcC--CcEEEEccc
Q 012098 310 YHTGAVLPKPRNLIDTVRELV---LSR--NLNLIIEPG 342 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~---~~~--~~~l~~EpG 342 (471)
..........+.+.+.+++++ .++ ++++.+||=
T Consensus 145 ~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~~ 182 (393)
T 1xim_A 145 DSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPK 182 (393)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 211110001234445554443 344 899999984
No 72
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=55.70 E-value=86 Score=29.47 Aligned_cols=99 Identities=12% Similarity=0.130 Sum_probs=57.9
Q ss_pred CCCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHHH--HH-HHHHHHHcCCceEEEEEEecCCCCCC-CcccccCCCC
Q 012098 159 FDPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFDL--EN-IVVASRIAGKKVNVLLRINPDVDPQV-HPYVATGNKN 232 (471)
Q Consensus 159 ~~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~el--~~-l~~~a~~~g~~~~V~lRin~~~~~~~-~~~~~tg~~~ 232 (471)
+++.++++.|.- .++++.+.+.+.|+. +..+.+.+. +. +.++....+ .-.|.|=++.+.-... -+ .|| ..
T Consensus 157 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~l~-~~~vylSiDiDvlDp~~aP--gtg-tp 232 (290)
T 2ef5_A 157 VDPKDVVLVGVRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKHLQ-GLPLHVSLDADVLDPTLAP--GVG-TP 232 (290)
T ss_dssp CCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHTT-TSCEEEEEEGGGBCTTTCC--CCS-SC
T ss_pred cCcccEEEEECCCCCHHHHHHHHHcCCeEEEHHHHHhcCHHHHHHHHHHhcC-CCcEEEEEccCCCChhhCC--CCC-CC
Confidence 456788877752 356777778788986 554444331 11 222222232 2246666664432111 11 122 36
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
...|++..|+..+++.+... .+++|+..-
T Consensus 233 ~pgGlt~~e~~~~l~~l~~~---~~vvg~Div 261 (290)
T 2ef5_A 233 VPGGLTYREAHLLMEILAES---GRVQSLDLV 261 (290)
T ss_dssp CSSCBCHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHcC---CCEEEEEEE
Confidence 78999999999999988753 358887764
No 73
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=55.40 E-value=1.4e+02 Score=28.12 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=88.8
Q ss_pred HHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCC--------CCcH--------HHHHHHHhCCCEEE----
Q 012098 131 KILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGN--------GKLL--------EDLVLAAQEGVFVN---- 187 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~--------~k~~--------~~l~~a~~~gv~i~---- 187 (471)
.+++.+.+. +. ...+....+++.+.++|++.-+|..... .++. +-++.+.+.|..+.
T Consensus 63 ~~~~~~~~~~~~~~~~l~~~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~ 142 (298)
T 2cw6_A 63 EVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVS 142 (298)
T ss_dssp HHHHHSCCCTTCBCCEECCSHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhhCCCCEEEEEcCCHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 444444432 32 2335678889999999986333322211 0111 12455556786542
Q ss_pred --e-------CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC-CCCce
Q 012098 188 --V-------DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH-PNELK 257 (471)
Q Consensus 188 --v-------Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~-~~~l~ 257 (471)
+ .+.+++..+.+.+.+.|.. .|++. +|-| ..++++..++++.+++. + ++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~---~i~l~-----------DT~G-----~~~P~~~~~lv~~l~~~~~-~~- 201 (298)
T 2cw6_A 143 CALGCPYEGKISPAKVAEVTKKFYSMGCY---EISLG-----------DTIG-----VGTPGIMKDMLSAVMQEVP-LA- 201 (298)
T ss_dssp TTTCBTTTBSCCHHHHHHHHHHHHHTTCS---EEEEE-----------ETTS-----CCCHHHHHHHHHHHHHHSC-GG-
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHHcCCC---EEEec-----------CCCC-----CcCHHHHHHHHHHHHHhCC-CC-
Confidence 1 2678888888877787764 23443 1211 25788998888887653 2 33
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec-CCCCc-CCCCCCCCCCCHHHHHHHHHH
Q 012098 258 LVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG-GGLGI-DYYHTGAVLPKPRNLIDTVRE 328 (471)
Q Consensus 258 l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG-GGl~i-~y~~~~~~~~~~~~~~~~i~~ 328 (471)
..++|+|--.... ... .+..+ +.|. +++|.- +|+|- ||...+......++++..++.
T Consensus 202 ~i~~H~Hn~~Gla-~An----------~laA~-~aGa--~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~ 260 (298)
T 2cw6_A 202 ALAVHCHDTYGQA-LAN----------TLMAL-QMGV--SVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEG 260 (298)
T ss_dssp GEEEEEBCTTSCH-HHH----------HHHHH-HTTC--CEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHH
T ss_pred eEEEEECCCCchH-HHH----------HHHHH-HhCC--CEEEeecccccCCCCCCCCcCChhHHHHHHHHHh
Confidence 4689999644321 111 11112 2354 667753 66764 665433334456777666654
No 74
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=55.21 E-value=20 Score=32.89 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
+.++.+.++++ ++.+.++|+...- ......+++.++.+.+.++..++.|.+ +|.++-+-+.. .......+.
T Consensus 49 ~~~~~~~l~~~--gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~A~~lG~~--~v~~~~~p~~~----~~~~~~~~~ 119 (281)
T 3u0h_A 49 DAAVEAMFQRR--GLVLANLGLPLNL-YDSEPVFLRELSLLPDRARLCARLGAR--SVTAFLWPSMD----EEPVRYISQ 119 (281)
T ss_dssp HHHHHHHHHTT--TCEECCEECCSCT-TSCHHHHHHHHHTHHHHHHHHHHTTCC--EEEEECCSEES----SCHHHHHHH
T ss_pred HHHHHHHHHHc--CCceEEecccccc-cCCCHHHHHHHHHHHHHHHHHHHcCCC--EEEEeecCCCC----CcchhhHHH
Confidence 45555666666 7898888765321 122234556666666777766777754 45533211110 000002334
Q ss_pred HHHHHHHHH---hcCCcEEEEccc
Q 012098 322 LIDTVRELV---LSRNLNLIIEPG 342 (471)
Q Consensus 322 ~~~~i~~~~---~~~~~~l~~EpG 342 (471)
+++.+++++ .++|+++.+|+-
T Consensus 120 ~~~~l~~l~~~a~~~Gv~l~lE~~ 143 (281)
T 3u0h_A 120 LARRIRQVAVELLPLGMRVGLEYV 143 (281)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEECC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEec
Confidence 455554443 578999999985
No 75
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=55.02 E-value=28 Score=34.22 Aligned_cols=99 Identities=21% Similarity=0.201 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeec--------CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHL--------GST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDY 309 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~--------Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y 309 (471)
+++.++.+.++++ ++.+.++|... |.- ..+.+..+++++.+.+.++..++.|. ++|.+.+|. +..|
T Consensus 69 ~~~~~l~~~l~~~--GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa--~~vvv~~g~~~~~~ 144 (386)
T 1muw_A 69 SHIKRFRQALDAT--GMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGA--KTYVAWGGREGAES 144 (386)
T ss_dssp HHHHHHHHHHHHH--TCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--SEEEECCTTCEESS
T ss_pred HHHHHHHHHHHHh--CCeEEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCCCCcccc
Confidence 3555666666666 78888887622 111 23444456666777777777777775 467776654 2222
Q ss_pred CCCCCCCCCHHHHHHHHHHHH---hcCC--cEEEEccc
Q 012098 310 YHTGAVLPKPRNLIDTVRELV---LSRN--LNLIIEPG 342 (471)
Q Consensus 310 ~~~~~~~~~~~~~~~~i~~~~---~~~~--~~l~~EpG 342 (471)
..........+.+++.+++++ .++| +++.+|+-
T Consensus 145 ~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~ 182 (386)
T 1muw_A 145 GAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFAIEPK 182 (386)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 111000001234455555543 4567 99999984
No 76
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=54.86 E-value=42 Score=31.07 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=60.4
Q ss_pred HHHHhCC--CEEEe-CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH-HHcC
Q 012098 177 VLAAQEG--VFVNV-DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA-VKAH 252 (471)
Q Consensus 177 ~~a~~~g--v~i~v-Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~-l~~~ 252 (471)
+.+.+.. +++.| =.......+.+.+++.|+. |+|.+-.........| .|...-.-|++.+|+...++. +...
T Consensus 21 ~~i~~Lp~pvT~Ai~P~~p~~~~~a~~A~~~G~E--vllHlPMep~~~~~~~--~gp~~L~~~~s~~ei~~~l~~al~~v 96 (245)
T 2nly_A 21 DDFLTGEIPVTVAVMPFLEHSTKQAEIAQAAGLE--VIVHMPLEPKKGKISW--LGPSGITSNLSVGEVKSRVRKAFDDI 96 (245)
T ss_dssp HHHHTCSSCEEEEECSSSTTHHHHHHHHHHTTCE--EEEEEEECCC----------CCCBCTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCeEEEECCCCCCHHHHHHHHHHCCCE--EEEEcCCCCCCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHC
Confidence 3344544 44432 2344556667777887875 5555543221111111 222234457788888776664 4455
Q ss_pred CCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098 253 PNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 253 ~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
| ..+|+--|.||...... +. +..+++.|++.| +-+||=|
T Consensus 97 P---~a~GvnNHmGS~~T~~~---~~---m~~vm~~l~~~g--L~fvDS~ 135 (245)
T 2nly_A 97 P---YAVGLNNHMGSKIVENE---KI---MRAILEVVKEKN--AFIIDSG 135 (245)
T ss_dssp T---TCCEEEEEECTTGGGCH---HH---HHHHHHHHHHTT--CEEEECC
T ss_pred C---CcEEEecccccchhcCH---HH---HHHHHHHHHHCC--CEEEcCC
Confidence 5 47899999999754221 22 334455566655 6788866
No 77
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=53.95 E-value=28 Score=34.36 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeec--------CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCCC
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHL--------GST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYY 310 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~--------Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y~ 310 (471)
++.++.+.++++ ++.+..++... |.- ..+.+..+++++.+.+.++..++.|.+ +|.+-+|. +..|.
T Consensus 70 ~~~~l~~~l~~~--GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vvv~~G~~g~~~~ 145 (394)
T 1xla_A 70 ILGDFNQALKDT--GLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAE--TFVMWGGREGSEYD 145 (394)
T ss_dssp HHHHHHHHHHHH--CCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHTTCS--EEEECCTTCEESSG
T ss_pred HHHHHHHHHHHc--CCeEEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCccccc
Confidence 455666666666 68888877632 111 234455566777777777777777764 56665553 22221
Q ss_pred CCCCCCCCHHHHHHHHHHHH---hcCC--cEEEEccc
Q 012098 311 HTGAVLPKPRNLIDTVRELV---LSRN--LNLIIEPG 342 (471)
Q Consensus 311 ~~~~~~~~~~~~~~~i~~~~---~~~~--~~l~~EpG 342 (471)
.........+.+++.+++++ .++| +++.+|+=
T Consensus 146 ~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~ 182 (394)
T 1xla_A 146 GSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALEPK 182 (394)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 11100011344555555544 3578 99999984
No 78
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=51.74 E-value=1e+02 Score=29.70 Aligned_cols=147 Identities=14% Similarity=0.110 Sum_probs=75.9
Q ss_pred EEeHHHHHHHHHHHHHHhcCCC-ceEEEecccCCc-HHHHHHHHHc--CCceEE---cCHHHHHHHHHC----CCCCCcE
Q 012098 96 LYSKPQITRNVEAYKQALEGLN-SIIGYAIKANNN-YKILEHLRKL--GCGAVL---VSGNELRLALRA----GFDPTKC 164 (471)
Q Consensus 96 v~d~~~l~~n~~~~~~a~~~~~-~~i~yavKaN~~-~~vl~~l~~~--G~g~~v---aS~~El~~a~~~----G~~~~~I 164 (471)
.+..+...+-++++-++ +.. .++.++. +++. .+.++.+.+. +..+.+ .....++.+.++ |++ +|
T Consensus 24 ~~~~~~Kl~ia~~L~~~--Gv~~IE~g~p~-~~~~d~e~v~~i~~~~~~~~i~~l~r~~~~~i~~a~~al~~ag~~--~v 98 (325)
T 3eeg_A 24 QLNTEEKIIVAKALDEL--GVDVIEAGFPV-SSPGDFNSVVEITKAVTRPTICALTRAKEADINIAGEALRFAKRS--RI 98 (325)
T ss_dssp -CCTTHHHHHHHHHHHH--TCSEEEEECTT-SCHHHHHHHHHHHHHCCSSEEEEECCSCHHHHHHHHHHHTTCSSE--EE
T ss_pred CCCHHHHHHHHHHHHHc--CCCEEEEeCCC-CCHhHHHHHHHHHHhCCCCEEEEeecCCHHHHHHHHHhhcccCCC--EE
Confidence 35566666666665543 221 3455543 3442 2334555554 332222 357778878777 653 44
Q ss_pred -EEeCCC---------Cc--------HHHHHHHHhCCCEEEe-------CCHHHHHHHHHHHHHcCCceEEEEEEecCCC
Q 012098 165 -IFNGNG---------KL--------LEDLVLAAQEGVFVNV-------DSEFDLENIVVASRIAGKKVNVLLRINPDVD 219 (471)
Q Consensus 165 -i~~g~~---------k~--------~~~l~~a~~~gv~i~v-------Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~ 219 (471)
+|.... ++ .+-++.|.+.|..+.+ -+.+.+..+.+.+.+.|.. .|.+.
T Consensus 99 ~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~---~i~l~---- 171 (325)
T 3eeg_A 99 HTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGAD---VVNIP---- 171 (325)
T ss_dssp EEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCS---EEECC----
T ss_pred EEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCC---EEEec----
Confidence 332211 01 1234556667765433 3555666666666666654 13332
Q ss_pred CCCCcccccCCCCCCCCCCHhHHHHHHHHHHc-CCCCc--eEEEEEeecCC
Q 012098 220 PQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-HPNEL--KLVGAHCHLGS 267 (471)
Q Consensus 220 ~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~-~~~~l--~l~Glh~H~Gs 267 (471)
+|- -...+.++.++++.+++ .+ ++ ...++|+|--.
T Consensus 172 -------DT~-----G~~~P~~v~~lv~~l~~~~~-~~~~~~i~~H~Hnd~ 209 (325)
T 3eeg_A 172 -------DTT-----GYMLPWQYGERIKYLMDNVS-NIDKAILSAHCHNDL 209 (325)
T ss_dssp -------BSS-----SCCCHHHHHHHHHHHHHHCS-CGGGSEEEECBCCTT
T ss_pred -------Ccc-----CCcCHHHHHHHHHHHHHhCC-CCCceEEEEEeCCCC
Confidence 121 12467888888888765 33 31 46789998543
No 79
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=51.05 E-value=1.5e+02 Score=27.59 Aligned_cols=83 Identities=10% Similarity=0.057 Sum_probs=54.8
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHC--CCCCCcEEEeCCCCc---HHHHHHHHhCCCEEEe-CC----------
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRA--GFDPTKCIFNGNGKL---LEDLVLAAQEGVFVNV-DS---------- 190 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~--G~~~~~Ii~~g~~k~---~~~l~~a~~~gv~i~v-Ds---------- 190 (471)
.++++.+.+. ++ .+|......++.|+++ |. .|+..-.+.. ++.+..+.++|+.+++ ..
T Consensus 67 ~~vi~~l~~~~~~pisIDT~~~~v~~aal~a~~Ga---~iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~ 143 (271)
T 2yci_X 67 EWLVKTIQEVVDLPCCLDSTNPDAIEAGLKVHRGH---AMINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDAN 143 (271)
T ss_dssp HHHHHHHHHHCCCCEEEECSCHHHHHHHHHHCCSC---CEEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHH
T ss_pred HHHHHHHHHhCCCeEEEeCCCHHHHHHHHHhCCCC---CEEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHH
Confidence 4667777665 54 6788889999999998 75 5776544443 4556667788875332 22
Q ss_pred --HHHHHHHHHHHHHcCCce-EEEEEEecC
Q 012098 191 --EFDLENIVVASRIAGKKV-NVLLRINPD 217 (471)
Q Consensus 191 --~~el~~l~~~a~~~g~~~-~V~lRin~~ 217 (471)
.+.++.+.+.+.+.|.+. +|. ++|+
T Consensus 144 ~~~~~l~~~~~~a~~~Gi~~~~Ii--lDPg 171 (271)
T 2yci_X 144 DRSQLAMELVANADAHGIPMTELY--IDPL 171 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE--EECC
T ss_pred HHHHHHHHHHHHHHHCCCCcccEE--EecC
Confidence 666777777787777543 444 4554
No 80
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=50.85 E-value=87 Score=28.26 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=46.1
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
++.+.+++.++.+.++++ ++.+.++|.... ...+.+++. ++..++.|. ++|.+--| .
T Consensus 56 ~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~---~~~~~~~~~-------i~~A~~lGa--~~v~~~p~--~------- 112 (257)
T 3lmz_A 56 LNSTDEQIRAFHDKCAAH--KVTGYAVGPIYM---KSEEEIDRA-------FDYAKRVGV--KLIVGVPN--Y------- 112 (257)
T ss_dssp TTCCHHHHHHHHHHHHHT--TCEEEEEEEEEE---CSHHHHHHH-------HHHHHHHTC--SEEEEEEC--G-------
T ss_pred CCCCHHHHHHHHHHHHHc--CCeEEEEecccc---CCHHHHHHH-------HHHHHHhCC--CEEEecCC--H-------
Confidence 456777788888888887 799998887654 233333333 223333454 34443211 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEccc
Q 012098 315 VLPKPRNLIDTVRELVLSRNLNLIIEPG 342 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~~~~~l~~EpG 342 (471)
+..+.+.+...++|+++.+|+-
T Consensus 113 ------~~l~~l~~~a~~~gv~l~lEn~ 134 (257)
T 3lmz_A 113 ------ELLPYVDKKVKEYDFHYAIHLH 134 (257)
T ss_dssp ------GGHHHHHHHHHHHTCEEEEECC
T ss_pred ------HHHHHHHHHHHHcCCEEEEecC
Confidence 1223344555668999999986
No 81
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=50.80 E-value=88 Score=29.64 Aligned_cols=127 Identities=20% Similarity=0.220 Sum_probs=72.7
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCC--CCCHhHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF--GIRNEKLQWFL 246 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKf--Gi~~~el~~~l 246 (471)
..+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.++ ..+| |. +.+..++
T Consensus 9 ~~~ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~s--PvIlq~s~~--------------~~~~~~g~--~~~~~~v 70 (288)
T 3q94_A 9 MKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKS--PVILGVSEG--------------AARHMTGF--KTVVAMV 70 (288)
T ss_dssp SHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTC--CEEEEEEHH--------------HHHHTSCH--HHHHHHH
T ss_pred HHHHHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECChh--------------hhhhcCCH--HHHHHHH
Confidence 356777887765 44 899999999999999998764 577888653 1222 32 3344444
Q ss_pred HHHHc--CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHH-
Q 012098 247 DAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLI- 323 (471)
Q Consensus 247 ~~l~~--~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~- 323 (471)
..+.+ .. .+ .+.||.--|. +.+...+++ +.|++=-++| |.- .| +++=+
T Consensus 71 ~~~A~~~~~-~V-PValHlDHg~---~~e~i~~ai-----------~~GFtSVMiD-gS~-----------~p-~eeNi~ 121 (288)
T 3q94_A 71 KALIEEMNI-TV-PVAIHLDHGS---SFEKCKEAI-----------DAGFTSVMID-ASH-----------HP-FEENVE 121 (288)
T ss_dssp HHHHHHTTC-CS-CEEEEEEEEC---SHHHHHHHH-----------HHTCSEEEEC-CTT-----------SC-HHHHHH
T ss_pred HHHHHhcCC-CC-cEEEECCCCC---CHHHHHHHH-----------HcCCCeEEEe-CCC-----------CC-HHHHHH
Confidence 43333 22 33 4557764442 344333222 1255433444 222 22 33323
Q ss_pred --HHHHHHHhcCCcEEEEccccee
Q 012098 324 --DTVRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 324 --~~i~~~~~~~~~~l~~EpGR~l 345 (471)
..+-+.+...|+.+-.|.|+--
T Consensus 122 ~Tk~vv~~ah~~gvsVEaElG~vg 145 (288)
T 3q94_A 122 TTKKVVEYAHARNVSVEAELGTVG 145 (288)
T ss_dssp HHHHHHHHHHTTTCEEEEEESBCB
T ss_pred HHHHHHHHHHHcCCeEEEEeeeec
Confidence 3344455678999999999764
No 82
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=50.34 E-value=63 Score=32.23 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHH-Hh-CCC-EEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-AQ-EGV-FVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a-~~-~gv-~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.|.+.|..+.+. +..-++.+.+.|+ .+++ |...+.+.|+.| ++ ..+ .+++++.+.-..+...+++.
T Consensus 17 ~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~---~vi~-GDat~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~ 92 (413)
T 3l9w_A 17 QITGRLLLSSGVKMVVLDHDPDHIETLRKFGM---KVFY-GDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEH 92 (413)
T ss_dssp HHHHHHHHHTTCCEEEEECCHHHHHHHHHTTC---CCEE-SCTTCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHhCCC---eEEE-cCCCCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHh
Confidence 45777787788755444 4555666666665 2444 665666666655 22 232 45677777777777788888
Q ss_pred CCceEEEEEEe
Q 012098 205 GKKVNVLLRIN 215 (471)
Q Consensus 205 g~~~~V~lRin 215 (471)
++.++|..|.+
T Consensus 93 ~p~~~Iiara~ 103 (413)
T 3l9w_A 93 FPHLQIIARAR 103 (413)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEEC
Confidence 88888888886
No 83
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=50.28 E-value=1.5e+02 Score=28.06 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=78.1
Q ss_pred cCHHHHHHHHHCCCCCCcEEEeCC--------CCcH--------HHHHHHHhCCCEEE------e-------CCHHHHHH
Q 012098 146 VSGNELRLALRAGFDPTKCIFNGN--------GKLL--------EDLVLAAQEGVFVN------V-------DSEFDLEN 196 (471)
Q Consensus 146 aS~~El~~a~~~G~~~~~Ii~~g~--------~k~~--------~~l~~a~~~gv~i~------v-------Ds~~el~~ 196 (471)
.....++.+.++|++.-+|..... .++. +.++.+.+.|..+. + -+.+.+..
T Consensus 82 ~~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~ 161 (307)
T 1ydo_A 82 PNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIR 161 (307)
T ss_dssp CSHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred CCHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHH
Confidence 467778888888885322222111 1121 22445556786542 1 25677777
Q ss_pred HHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHH
Q 012098 197 IVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFR 276 (471)
Q Consensus 197 l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~ 276 (471)
+.+.+.+.|... |.+. +|-| ...+++..++++.+++.-.++ ..|+|+|--.+.. ...
T Consensus 162 ~~~~~~~~Ga~~---i~l~-----------DT~G-----~~~P~~v~~lv~~l~~~~~~~-~l~~H~Hnd~Gla-~AN-- 218 (307)
T 1ydo_A 162 LSEALFEFGISE---LSLG-----------DTIG-----AANPAQVETVLEALLARFPAN-QIALHFHDTRGTA-LAN-- 218 (307)
T ss_dssp HHHHHHHHTCSC---EEEE-----------CSSC-----CCCHHHHHHHHHHHHTTSCGG-GEEEECBGGGSCH-HHH--
T ss_pred HHHHHHhcCCCE---EEEc-----------CCCC-----CcCHHHHHHHHHHHHHhCCCC-eEEEEECCCCchH-HHH--
Confidence 777777777542 3333 1211 246889999999887641033 5689999543321 111
Q ss_pred HHHHHHHHHHHHHHHcCCCCCEEEec-CCCCc-CCCCCCCCCCCHHHHHHHHH
Q 012098 277 DAAVLMVNYIDKIRAQGFEVDYLNIG-GGLGI-DYYHTGAVLPKPRNLIDTVR 327 (471)
Q Consensus 277 ~~~~~~~~~~~~l~~~g~~l~~ldiG-GGl~i-~y~~~~~~~~~~~~~~~~i~ 327 (471)
.+..++ .|. +.+|.- +|+|- ||...+......++++..++
T Consensus 219 --------~laAv~-aGa--~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~ 260 (307)
T 1ydo_A 219 --------MVTALQ-MGI--TVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLE 260 (307)
T ss_dssp --------HHHHHH-HTC--CEEEEBGGGCCEETTEEEEECBCBHHHHHHHHH
T ss_pred --------HHHHHH-hCC--CEEEEcccccCCCCCCCCCCCChhHHHHHHHHH
Confidence 111121 244 677755 66764 55433222334566665554
No 84
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=50.09 E-value=1.7e+02 Score=27.62 Aligned_cols=105 Identities=17% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHHHH-CCCCCCcEEEeCCCC---cHHHHHHHHhCCCE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCC-Cc
Q 012098 151 LRLALR-AGFDPTKCIFNGNGK---LLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQV-HP 224 (471)
Q Consensus 151 l~~a~~-~G~~~~~Ii~~g~~k---~~~~l~~a~~~gv~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~-~~ 224 (471)
+..+++ .+.- +++++.|.-. ++++.+.+.+.|+. +..+.+.+. +.+..++....-.|.|=++.+.-... -+
T Consensus 163 ~~~~~~~~~~~-~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~--~~~v~~~~~~~~~vylSiDiDvlDpa~aP 239 (305)
T 1woh_A 163 FRRACEALPNL-VHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTAD--LAGVLAQLPRGQNVYFSVDVDGFDPAVIP 239 (305)
T ss_dssp HHHHHHHCTTE-EEEEEEEECCSCCCHHHHHHHHHTTCEEEEHHHHHHC--HHHHHTTSCCSSEEEEEEEGGGBCTTTCC
T ss_pred HHHHhhccCCC-CcEEEEEeCCCCCCHHHHHHHHHcCCeEEEHHHHHHH--HHHHHHHhhCCCcEEEEEeecCCChhhCC
Confidence 444554 4321 2777777532 67888888889986 454433331 23233322112357777765432111 11
Q ss_pred ccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 225 YVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 225 ~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.|| .....|++..|+.++++.+.+. .+++|+..-
T Consensus 240 --gtg-tp~pgGlt~~e~~~~l~~l~~~---~~vvg~Div 273 (305)
T 1woh_A 240 --GTS-SPEPDGLTYAQGMKILAAAAAN---NTVVGLDLV 273 (305)
T ss_dssp --CBS-SCCSSCBCHHHHHHHHHHHHHH---SEEEEEEEE
T ss_pred --CCC-CCCCCCCCHHHHHHHHHHHhcc---CCEEEEEEE
Confidence 122 4678999999999999988653 478887764
No 85
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=49.41 E-value=1e+02 Score=29.23 Aligned_cols=99 Identities=9% Similarity=-0.007 Sum_probs=57.5
Q ss_pred CCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHH------HHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCC
Q 012098 160 DPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFD------LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNK 231 (471)
Q Consensus 160 ~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~e------l~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~ 231 (471)
+++++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+..+..+ .-.|.|=++.+.-..... -.|| .
T Consensus 166 ~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~-~~~vylSiDiDvlDp~~a-Pgtg-t 242 (306)
T 1pq3_A 166 SSASIVYIGLRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKR-QRPIHLSFDIDAFDPTLA-PATG-T 242 (306)
T ss_dssp CGGGEEEESCCCCCHHHHHHHHHTTCEEECHHHHHHHCHHHHHHHHHHHHHSSS-CCCEEEEEEGGGBCTTTC-CSBS-S
T ss_pred CcccEEEEEcCCCCHHHHHHHHHcCCeEEEhHHHhhhCHHHHHHHHHHHHhhcC-CCeEEEEEecCCcCcccc-CCCC-C
Confidence 46788888863 356778888888986 44443322 122222221012 224666666443211110 1123 3
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
....|++..|+..+++.+.+. .+++|+..-
T Consensus 243 p~pgGlt~~e~~~~l~~l~~~---~~vvg~Div 272 (306)
T 1pq3_A 243 PVVGGLTYREGMYIAEEIHNT---GLLSALDLV 272 (306)
T ss_dssp CCSSCBCHHHHHHHHHHHHTT---TCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHcC---CCEEEEEEE
Confidence 677899999999999998764 368888764
No 86
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=49.28 E-value=1e+02 Score=29.06 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=66.7
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEEe-CC--------------
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVNV-DS-------------- 190 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~v-Ds-------------- 190 (471)
.++++.+.+. ++ .+|......++.|+++|. .|+..-.+ ..++.++.+.++|+.+++ ..
T Consensus 79 ~pvi~~l~~~~~~piSIDT~~~~va~aAl~aGa---~iINdvsg~~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~ 155 (282)
T 1aj0_A 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKVGA---HIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYD 155 (282)
T ss_dssp HHHHHHHHHHCCCEEEEECCCHHHHHHHHHTTC---CEEEETTTTCSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCS
T ss_pred HHHHHHHHhhcCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCHHHHHHHHHhCCeEEEEccCCCCccccccCccc
Confidence 3566666554 64 788888999999999986 47665443 455677788888864322 21
Q ss_pred ------HHHHHHHHHHHHHcCCce-EEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC
Q 012098 191 ------EFDLENIVVASRIAGKKV-NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252 (471)
Q Consensus 191 ------~~el~~l~~~a~~~g~~~-~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~ 252 (471)
.+.++...+.+.+.|.+. +|.| +|+. -||=+.++-.++++.+...
T Consensus 156 d~~~ev~~~l~~~i~~a~~~Gi~~~~Iil--DPg~---------------gf~k~~~~n~~ll~~l~~~ 207 (282)
T 1aj0_A 156 DVFAEVNRYFIEQIARCEQAGIAKEKLLL--DPGF---------------GFGKNLSHNYSLLARLAEF 207 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGEEE--ECCT---------------TSSCCHHHHHHHHHTGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhEEE--eCCC---------------CcccCHHHHHHHHHHHHHH
Confidence 667777777777788542 4544 4542 2555666666677766544
No 87
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=48.84 E-value=1.9e+02 Score=27.70 Aligned_cols=103 Identities=18% Similarity=0.301 Sum_probs=61.9
Q ss_pred eCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hH----HHHHHHHHHcCCCCceEEEEE
Q 012098 188 VDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EK----LQWFLDAVKAHPNELKLVGAH 262 (471)
Q Consensus 188 vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~e----l~~~l~~l~~~~~~l~l~Glh 262 (471)
..++..+.++.+...+.|.+ +.|+..+. .|+.+ ...+|... ++ +.++-+.++++ +++ |.
T Consensus 56 ~~Nl~~l~~il~~n~~~~I~---~yRiSS~l----~P~~t----hp~~~~~~~~~~~~~l~~iG~~a~~~--~iR---LS 119 (310)
T 3tc3_A 56 SSNLLCLKNILEWNLKHEIL---FFRISSNT----IPLAS----HPKFHVNWKDKLSHILGDIGDFIKEN--SIR---IS 119 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---EEECCTTS----STTTT----STTCCCCHHHHTHHHHHHHHHHHHHT--TCE---EE
T ss_pred HHHHHHHHHHHHHHHHcCCE---EEEeCccc----CCCcc----ccccccchHHHHHHHHHHHHHHHHHc--CcE---EE
Confidence 35677788888877776654 48887543 22211 22355553 33 33444445666 676 58
Q ss_pred eecCCCC----CCHHHHHHHHHHHHHHHHHHHHcCCCCC-EEEecCCCC
Q 012098 263 CHLGSTI----TKVDIFRDAAVLMVNYIDKIRAQGFEVD-YLNIGGGLG 306 (471)
Q Consensus 263 ~H~Gs~~----~~~~~~~~~~~~~~~~~~~l~~~g~~l~-~ldiGGGl~ 306 (471)
||.|... .+++....+++.+..-.+.+...|.+-. .|.+||.+|
T Consensus 120 ~HPgqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yG 168 (310)
T 3tc3_A 120 MHPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMN 168 (310)
T ss_dssp ECCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTT
T ss_pred ecCCCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCC
Confidence 9998642 4567777777776655555566676532 467787665
No 88
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=48.42 E-value=99 Score=29.42 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=64.2
Q ss_pred HHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCEEEe-CC-------------H
Q 012098 131 KILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVFVNV-DS-------------E 191 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~i~v-Ds-------------~ 191 (471)
++++.+.+. ++ .+|......++.|+++|. .|+..-.+ ..++.++.+.++|+.+++ .+ .
T Consensus 105 pvI~~l~~~~~vpiSIDT~~~~V~~aAl~aGa---~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~ 181 (297)
T 1tx2_A 105 PMIQAVSKEVKLPISIDTYKAEVAKQAIEAGA---HIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMI 181 (297)
T ss_dssp HHHHHHHHHSCSCEEEECSCHHHHHHHHHHTC---CEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHH
T ss_pred HHHHHHHhcCCceEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHH
Confidence 444666554 64 778888999999999986 47655443 245667777888874332 21 4
Q ss_pred HHHHHHHHHHHHcCCce-EEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC
Q 012098 192 FDLENIVVASRIAGKKV-NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH 252 (471)
Q Consensus 192 ~el~~l~~~a~~~g~~~-~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~ 252 (471)
+.++...+.+.+.|.+. +|. ++|+. -||-+.++-.++++.+...
T Consensus 182 ~~l~~~i~~a~~~GI~~~~Ii--lDPg~---------------Gfgk~~~~n~~ll~~l~~l 226 (297)
T 1tx2_A 182 ADLYDSIKIAKDAGVRDENII--LDPGI---------------GFAKTPEQNLEAMRNLEQL 226 (297)
T ss_dssp HHHHHHHHHHHHTTCCGGGEE--EECCT---------------TSSCCHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHcCCChhcEE--EeCCC---------------CcCCCHHHHHHHHHHHHHH
Confidence 56666677777777542 444 34432 2566777666677766543
No 89
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex; HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A* 3sl0_A*
Probab=48.36 E-value=1e+02 Score=30.84 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHHH--HH-HHHHHHHcC--CceEEEEEEecCCCCC-CCcccccCCC
Q 012098 160 DPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFDL--EN-IVVASRIAG--KKVNVLLRINPDVDPQ-VHPYVATGNK 231 (471)
Q Consensus 160 ~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~el--~~-l~~~a~~~g--~~~~V~lRin~~~~~~-~~~~~~tg~~ 231 (471)
+++++++.|.- .++++.+++.+.|+. +..+.+.+. +. +.++.+... ..-.|.|=++.+.-.. .-+ .|| .
T Consensus 263 ~p~~vv~IGIRs~d~eE~e~~~~~Gi~v~t~~eI~~~Gi~~vie~il~~l~~~~~~~VYLSfDIDvLDPa~AP--GtG-T 339 (413)
T 3sl1_A 263 KPENTAIIGIRDIDAYEKIILKKCNINYYTIFDIEKNGIYNTICTALEKIDPNSNCPIHISLDIDSVDNVFAP--GTG-T 339 (413)
T ss_dssp CGGGEEEEEECCCCHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHCTTSCSCEEEEEEGGGBCTTTCC--CSS-S
T ss_pred CcceEEEEEcCCCCHHHHHHHHHcCCEEEeHHHhhhcCHHHHHHHHHHHhhhcCCceEEEEEeccEEChhhCC--CCC-C
Confidence 46788887742 356778888888986 555544432 12 222222232 1224666666443211 111 122 3
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
....|++..|+..+++.+.+. .+++|+..-
T Consensus 340 PepGGLt~rEll~llr~L~~s---~kVvG~DIV 369 (413)
T 3sl1_A 340 VAKGGLNYREINLLMKILAET---KRVVSMDLV 369 (413)
T ss_dssp CCSSCBCHHHHHHHHHHHHHH---SCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHhcc---CCEEEEEEE
Confidence 667999999999999988664 357777664
No 90
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=48.20 E-value=1.7e+02 Score=27.65 Aligned_cols=101 Identities=25% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEEe-C-------C--------
Q 012098 130 YKILEHLRKLGC--GAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVNV-D-------S-------- 190 (471)
Q Consensus 130 ~~vl~~l~~~G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~v-D-------s-------- 190 (471)
..+++.+.+.++ .+|......++.|+++|.+ |+..-.+ ..++.+..+.++|+.+++ . +
T Consensus 93 ~pvI~~l~~~~vpiSIDT~~~~Va~aAl~aGa~---iINdVsg~~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~ 169 (294)
T 2dqw_A 93 LPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAH---LLNDVTGLRDERMVALAARHGVAAVVMHMPVPDPATMMAHARYR 169 (294)
T ss_dssp HHHHHHHHTTCSCEEEECSCHHHHHHHHHHTCS---EEECSSCSCCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCS
T ss_pred HHHHHHHHhCCCeEEEECCCHHHHHHHHHhCCC---EEEECCCCCChHHHHHHHHhCCCEEEEcCCCCCCccccccCccc
Confidence 356666665464 7888889999999999863 6654222 456777888888875332 2 2
Q ss_pred ------HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 191 ------EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 191 ------~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
.+.++...+.+.+.|.+ +|.| +|+. -||-+.++-.++++.++.
T Consensus 170 dv~~ev~~~l~~~i~~a~~~Gi~-~Iil--DPG~---------------Gf~kt~~~n~~ll~~l~~ 218 (294)
T 2dqw_A 170 DVVAEVKAFLEAQARRALSAGVP-QVVL--DPGF---------------GFGKLLEHNLALLRRLDE 218 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCS-CEEE--ECCT---------------TSSCCHHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCC-cEEE--cCCC---------------CcccCHHHHHHHHHHHHH
Confidence 34566666777778876 5443 4431 266667666666665543
No 91
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=47.95 E-value=2e+02 Score=28.84 Aligned_cols=113 Identities=18% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCceEEcC-----HHHHHHHHHCCCCCCcEEEeC--------CCCcH--------HHHHHHHhCCCEEEeC
Q 012098 131 KILEHLRKLGCGAVLVS-----GNELRLALRAGFDPTKCIFNG--------NGKLL--------EDLVLAAQEGVFVNVD 189 (471)
Q Consensus 131 ~vl~~l~~~G~g~~vaS-----~~El~~a~~~G~~~~~Ii~~g--------~~k~~--------~~l~~a~~~gv~i~vD 189 (471)
..++.+.+.+....+.+ ...++.|.++|++.-.|.+.. -.++. +-++.|.+.|..+.++
T Consensus 91 ~~~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~ 170 (423)
T 3ivs_A 91 QDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFS 170 (423)
T ss_dssp HHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHhcCCCCEEEEeeccChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_pred -------CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEE
Q 012098 190 -------SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAH 262 (471)
Q Consensus 190 -------s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh 262 (471)
+.+.+..+.+.+.+.|... |.+. .+--..++.++.++++.+++.. ++.+ ++|
T Consensus 171 ~eda~r~d~~~~~~v~~~~~~~Ga~~---i~l~----------------DTvG~~~P~~v~~lv~~l~~~~-~~~i-~~H 229 (423)
T 3ivs_A 171 SEDSFRSDLVDLLSLYKAVDKIGVNR---VGIA----------------DTVGCATPRQVYDLIRTLRGVV-SCDI-ECH 229 (423)
T ss_dssp EESGGGSCHHHHHHHHHHHHHHCCSE---EEEE----------------ETTSCCCHHHHHHHHHHHHHHC-SSEE-EEE
T ss_pred EccCcCCCHHHHHHHHHHHHHhCCCc---cccC----------------CccCcCCHHHHHHHHHHHHhhc-CCeE-EEE
Q ss_pred ee
Q 012098 263 CH 264 (471)
Q Consensus 263 ~H 264 (471)
+|
T Consensus 230 ~H 231 (423)
T 3ivs_A 230 FH 231 (423)
T ss_dssp EB
T ss_pred EC
No 92
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=46.87 E-value=69 Score=30.29 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=57.7
Q ss_pred CCCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHH------HHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCC
Q 012098 159 FDPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFD------LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGN 230 (471)
Q Consensus 159 ~~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~e------l~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~ 230 (471)
++++++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+...+ ..-.|.|=++.+.-.... .-.||
T Consensus 164 ~~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~l~~~~~--~~~~vylSiDiDvlDp~~-aPgtg- 239 (299)
T 2cev_A 164 IKPEHVVLIGVRSLDEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETIAYLKE--RTDGVHLSLDLDGLDPSD-APGVG- 239 (299)
T ss_dssp SCGGGEEEEEECBCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHT--TCSEEEEEEEGGGBCTTT-CCCCS-
T ss_pred CCccceEEEECCCCCHHHHHHHHHcCCeEEEHHHHhhcCHHHHHHHHHHHhcc--CCCeEEEEEccCccChhh-cCCCC-
Confidence 345788877752 356777777788986 55554443 2222222210 122566766654321111 00122
Q ss_pred CCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 231 KNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 231 ~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.....|++..|+..+++.+.+. .+++|+..-
T Consensus 240 tp~pgGlt~~e~~~~l~~l~~~---~~vvg~Div 270 (299)
T 2cev_A 240 TPVIGGLTYRESHLAMEMLAEA---QIITSAEFV 270 (299)
T ss_dssp SCCSSCBCHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHhcC---CCEEEEEEE
Confidence 3678999999999999988753 358887764
No 93
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=46.59 E-value=74 Score=30.46 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=37.2
Q ss_pred eCCCCcHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 167 NGNGKLLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
.++ .+.+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.+
T Consensus 11 ~~n-~~~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~s--PvIlq~s~ 60 (306)
T 3pm6_A 11 KSN-RALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRS--PAMILLFP 60 (306)
T ss_dssp TTC-SSHHHHHHHHHTTCCEEEEECSSHHHHHHHHHHHHHTTC--CEEEEECH
T ss_pred Ccc-HHHHHHHHHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcCh
Confidence 344 6778888888876 43 899999999999999988764 57788764
No 94
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=46.42 E-value=68 Score=31.35 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=32.5
Q ss_pred HHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 173 LEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 173 ~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
.+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.+
T Consensus 10 ~~ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~s--PvIlq~s~ 54 (349)
T 3elf_A 10 AEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGS--DGIIQFST 54 (349)
T ss_dssp HHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTC--CEEEEECH
T ss_pred HHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcCh
Confidence 35566777766 43 899999999999999998764 57788864
No 95
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=46.42 E-value=72 Score=30.53 Aligned_cols=127 Identities=22% Similarity=0.200 Sum_probs=73.7
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
..+.|+.|.+.| +- +++.|++.++.+.++|++.+. .|.|.+.++ ..+|. ..+.+..++..
T Consensus 5 ~~~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~s--PvIlq~s~g--------------~~~y~-g~~~~~~~v~~ 67 (305)
T 1rvg_A 5 GLEILKKAREEGYGVGAFNVNNMEFLQAVLEAAEEQRS--PVILALSEG--------------AMKYG-GRALTLMAVEL 67 (305)
T ss_dssp HHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTTC--CEEEEEEHH--------------HHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECChh--------------HHhhC-CHHHHHHHHHH
Confidence 345677777765 43 899999999999999998765 577888653 11221 12344445554
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---H
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---T 325 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~ 325 (471)
+.+ . .+- +.||.--|. +.+..++++ +.|++=-++| |.- .| +++=++ .
T Consensus 68 ~a~-~-~VP-ValHlDHg~---~~e~~~~ai-----------~~GFtSVMiD-gS~-----------~p-~eENi~~Tk~ 117 (305)
T 1rvg_A 68 AKE-A-RVP-VAVHLDHGS---SYESVLRAL-----------RAGFTSVMID-KSH-----------ED-FETNVRETRR 117 (305)
T ss_dssp HHH-C-SSC-EEEEEEEEC---SHHHHHHHH-----------HTTCSEEEEC-CTT-----------SC-HHHHHHHHHH
T ss_pred HHh-C-CCc-EEEECCCCC---CHHHHHHHH-----------HcCCCeeeeC-CCC-----------CC-HHHHHHHHHH
Confidence 444 3 443 456764442 333332222 3466544555 222 22 333233 3
Q ss_pred HHHHHhcCCcEEEEccccee
Q 012098 326 VRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~l 345 (471)
+-+.+...|+.+-.|.|+--
T Consensus 118 vv~~ah~~gvsVEaELG~vg 137 (305)
T 1rvg_A 118 VVEAAHAVGVTVEAELGRLA 137 (305)
T ss_dssp HHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHHcCCEEEEEEeecc
Confidence 44455678999999999764
No 96
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=45.70 E-value=1e+02 Score=27.59 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCcEE-EEeHHHHHHHHHHHHHHhcC-CCceEEEecccCCcHHHHHHHHH-cC-----CceEEcCHHHHHHHHHCCCCCC
Q 012098 91 KRPFY-LYSKPQITRNVEAYKQALEG-LNSIIGYAIKANNNYKILEHLRK-LG-----CGAVLVSGNELRLALRAGFDPT 162 (471)
Q Consensus 91 ~tP~~-v~d~~~l~~n~~~~~~a~~~-~~~~i~yavKaN~~~~vl~~l~~-~G-----~g~~vaS~~El~~a~~~G~~~~ 162 (471)
..|+. |++.....+-++..++++.+ .. .+-+-.|.....+.++.+.+ .+ .|. +.+..+++.|+++|.+
T Consensus 15 ~~~~i~v~r~~~~~~~~~~~~al~~gGv~-~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd-- 90 (214)
T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVR-VLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQ-- 90 (214)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCC-EEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCS--
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHcCCC-EEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCC--
Confidence 46665 56665555555555555554 32 24555776655666675544 32 233 5678999999999974
Q ss_pred cEEEeCCCCcHHHHHHHHhCCC--EEEeCCHHHHHHHH
Q 012098 163 KCIFNGNGKLLEDLVLAAQEGV--FVNVDSEFDLENIV 198 (471)
Q Consensus 163 ~Ii~~g~~k~~~~l~~a~~~gv--~i~vDs~~el~~l~ 198 (471)
-+ ..| ..+.+-++.+.+.|+ .+-+.+.+|+....
T Consensus 91 ~v-~~p-~~d~~v~~~~~~~g~~~i~G~~t~~e~~~A~ 126 (214)
T 1wbh_A 91 FA-ISP-GLTEPLLKAATEGTIPLIPGISTVSELMLGM 126 (214)
T ss_dssp CE-EES-SCCHHHHHHHHHSSSCEEEEESSHHHHHHHH
T ss_pred EE-EcC-CCCHHHHHHHHHhCCCEEEecCCHHHHHHHH
Confidence 24 344 466666677777876 35688888875543
No 97
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=44.80 E-value=1.6e+02 Score=28.13 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=37.5
Q ss_pred HHHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC--CcHHHHHHHHhCCCEE
Q 012098 130 YKILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNG--KLLEDLVLAAQEGVFV 186 (471)
Q Consensus 130 ~~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~--k~~~~l~~a~~~gv~i 186 (471)
.++++.+.+. ++ .+|......++.|+++|. .||..-.+ .+++.+..+.++|+.+
T Consensus 74 ~pvI~~l~~~~~vpiSIDT~~~~Va~aAl~aGa---~iINDVsg~~~d~~m~~v~a~~~~~v 132 (314)
T 2vef_A 74 VPVIKAIRKESDVLISIDTWKSQVAEAALAAGA---DLVNDITGLMGDEKMPHVVAEARAQV 132 (314)
T ss_dssp HHHHHHHHHHCCCEEEEECSCHHHHHHHHHTTC---CEEEETTTTCSCTTHHHHHHHHTCEE
T ss_pred HHHHHHHHhhCCceEEEeCCCHHHHHHHHHcCC---CEEEECCCCCCChHHHHHHHHcCCCE
Confidence 3556666654 54 788888999999999986 46654333 2456677778888753
No 98
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=44.16 E-value=45 Score=32.70 Aligned_cols=47 Identities=15% Similarity=-0.014 Sum_probs=32.1
Q ss_pred cCCceEEEEEEecCCCCCCCcccccCCCCCCCC-CCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 204 AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG-IRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 204 ~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfG-i~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
.|....|++|+++.. ...-| .+.++..++++.+.+. ++.+ ||.|.|.
T Consensus 222 vg~d~pV~vRis~~~-------------~~~~G~~~~~~~~~la~~L~~~--Gvd~--i~vs~g~ 269 (363)
T 3l5l_A 222 WPENLPLTARFGVLE-------------YDGRDEQTLEESIELARRFKAG--GLDL--LSVSVGF 269 (363)
T ss_dssp SCTTSCEEEEEEEEC-------------SSSCHHHHHHHHHHHHHHHHHT--TCCE--EEEEECC
T ss_pred cCCCceEEEEecchh-------------cCCCCCCCHHHHHHHHHHHHHc--CCCE--EEEecCc
Confidence 466678999999742 12225 6778888888888876 5554 6666653
No 99
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=43.99 E-value=2e+02 Score=27.55 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=57.5
Q ss_pred CCCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCH-HHHHHHHHHH-HHcCCceEEEEEEecCCCC-CCCcccccCCCCC
Q 012098 159 FDPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSE-FDLENIVVAS-RIAGKKVNVLLRINPDVDP-QVHPYVATGNKNS 233 (471)
Q Consensus 159 ~~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~-~el~~l~~~a-~~~g~~~~V~lRin~~~~~-~~~~~~~tg~~~s 233 (471)
++++++++.|-- .++++.+.+.+.|+. +..+.+ ..++.+.+.+ +..+..-.|.|=++.+.-. ..-+ .|| ...
T Consensus 174 ~~~~~~v~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aP--gtg-tP~ 250 (330)
T 4g3h_A 174 IDPKCLVYFGVRSTEQSERDVIRELQIPLFSVDAIRENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFT--STG-VRE 250 (330)
T ss_dssp CCGGGEEEESCCBCCHHHHHHHHHHTCCEECHHHHHHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCC--SSS-SCC
T ss_pred CCcccEEEEecCCCCHHHHHHHHHcCCeEEEHHHhhcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCC--CCC-CCC
Confidence 466889888852 356777778788875 443332 0112222222 2223223566766654321 1111 122 357
Q ss_pred CCCCCHhHHHHHHHHHHc--CCCCceEEEEEee
Q 012098 234 KFGIRNEKLQWFLDAVKA--HPNELKLVGAHCH 264 (471)
Q Consensus 234 KfGi~~~el~~~l~~l~~--~~~~l~l~Glh~H 264 (471)
..|++..|+..+++.+.+ . .+++|+..-
T Consensus 251 pgGlt~~e~~~il~~l~~~~~---~~vvg~Div 280 (330)
T 4g3h_A 251 NNGLSFDELKQLLGLLLESFK---DRLKAVEVT 280 (330)
T ss_dssp SSCBCHHHHHHHHHHHHHHTT---TTEEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHhhCC---CCEEEEEEE
Confidence 889999999999998865 3 357777664
No 100
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=43.91 E-value=2.2e+02 Score=27.22 Aligned_cols=97 Identities=21% Similarity=0.103 Sum_probs=56.8
Q ss_pred CCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHH------HHHHHHHHHHHcCCceEEEEEEecCCCCCCCccccc
Q 012098 159 FDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEF------DLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVAT 228 (471)
Q Consensus 159 ~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~------el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~t 228 (471)
..+.++++.|.- .+.++.+.+.+.|+. +..+.+. -++.+.+... + .-.|.|=++.+.-.. ....
T Consensus 191 ~~~~~~~~iGiR~~~~~~~~~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~~l~--~-~~~vylSiDiDvLDp---a~aP 264 (336)
T 1xfk_A 191 GWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTQLQHFID--D-CDYLYLTIDLDVFPA---ASAP 264 (336)
T ss_dssp TCCCEEEEEEECTTTSCHHHHHHHHHTTCEEEEGGGCSTTTHHHHHHHHHHHHH--T-CSEEEEEEEGGGSBT---TTCC
T ss_pred CCCceEEEEEeCCCCCCHHHHHHHHHcCCEEEEHHHHHhcCHHHHHHHHHHHhc--C-CCeEEEEEeeccCCh---hcCC
Confidence 456788877753 345677788888986 5544332 1233332221 1 125666666443211 1111
Q ss_pred C-CCCCCCCCCHhHHHHHHHHH-HcCCCCceEEEEEee
Q 012098 229 G-NKNSKFGIRNEKLQWFLDAV-KAHPNELKLVGAHCH 264 (471)
Q Consensus 229 g-~~~sKfGi~~~el~~~l~~l-~~~~~~l~l~Glh~H 264 (471)
| +.....|++..|+..+++.+ .+. .+++|+..-
T Consensus 265 gtgtp~pgGlt~~e~~~~l~~l~~~~---~~vvg~Div 299 (336)
T 1xfk_A 265 GVSAPAARGVSLEALAPYFDRILHYK---NKLMIADIA 299 (336)
T ss_dssp SSSSCBSSCCCHHHHHHHHHHHHHCT---TTEEEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC---CCEEEEEEE
Confidence 1 24678899999999999998 653 468887764
No 101
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=43.68 E-value=89 Score=29.57 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=72.7
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
..+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.++. ..-+| .+.+...+..
T Consensus 6 ~~~ll~~A~~~~yAv~AfNv~n~e~~~avl~AAe~~~s--PvIlq~s~~~-------------~~y~g--~~~~~~~v~~ 68 (286)
T 1gvf_A 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRS--PVILAGTPGT-------------FKHIA--LEEIYALCSA 68 (286)
T ss_dssp SHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHHTC--CCEEEECTTH-------------HHHSC--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECChhH-------------HhhcC--HHHHHHHHHH
Confidence 346677787765 43 899999999999999998765 5677776531 11123 3445554444
Q ss_pred HHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---H
Q 012098 249 VKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID---T 325 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~---~ 325 (471)
+.+.. .+ .+.||.--|. +.+..++++ +.|++=-++| |. ..| +++=++ .
T Consensus 69 ~a~~~-~V-PValHlDHg~---~~e~i~~ai-----------~~GFtSVMiD-gS-----------~lp-~eeNi~~Tk~ 119 (286)
T 1gvf_A 69 YSTTY-NM-PLALHLDHHE---SLDDIRRKV-----------HAGVRSAMID-GS-----------HFP-FAENVKLVKS 119 (286)
T ss_dssp HHHHT-TS-CBEEEEEEEC---CHHHHHHHH-----------HTTCCEEEEC-CT-----------TSC-HHHHHHHHHH
T ss_pred HHHhC-CC-cEEEEcCCCC---CHHHHHHHH-----------HcCCCeEEEC-CC-----------CCC-HHHHHHHHHH
Confidence 33322 33 3556764432 343333322 1354433444 22 122 333333 3
Q ss_pred HHHHHhcCCcEEEEccccee
Q 012098 326 VRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 326 i~~~~~~~~~~l~~EpGR~l 345 (471)
+-+.+...|+.+-.|.|+--
T Consensus 120 vv~~ah~~gvsVEaElG~vg 139 (286)
T 1gvf_A 120 VVDFCHSQDCSVEAELGRLG 139 (286)
T ss_dssp HHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHHcCCEEEEEEeecc
Confidence 34455678999999999764
No 102
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=43.15 E-value=1.1e+02 Score=29.45 Aligned_cols=102 Identities=15% Similarity=0.228 Sum_probs=61.8
Q ss_pred HHHHHHHHc-CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEE-EeCC---------------
Q 012098 131 KILEHLRKL-GC--GAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFV-NVDS--------------- 190 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i-~vDs--------------- 190 (471)
++++.+.+. ++ .+|......++.|+++|. .|+..-.+ ..++.+..+.++|+.+ ...+
T Consensus 95 pvI~~l~~~~~vpISIDT~~~~Va~aAl~aGa---~iINDVsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydv 171 (314)
T 3tr9_A 95 PVIDAIKKRFPQLISVDTSRPRVMREAVNTGA---DMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYF 171 (314)
T ss_dssp HHHHHHHHHCCSEEEEECSCHHHHHHHHHHTC---CEEEETTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHH
T ss_pred HHHHHHHhhCCCeEEEeCCCHHHHHHHHHcCC---CEEEECCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccch
Confidence 456666554 54 678888999999999986 36654333 2345667777888643 2221
Q ss_pred ----HHHHHHHHHHHHHcCCce-EEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 191 ----EFDLENIVVASRIAGKKV-NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 191 ----~~el~~l~~~a~~~g~~~-~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
.+.++...+.+.+.|.+. +|. ++|+.. ..-||=+.++-.++++.+
T Consensus 172 v~ev~~~l~~~i~~a~~~GI~~~~Ii--lDPG~G------------~~~F~Kt~~~n~~lL~~l 221 (314)
T 3tr9_A 172 LQSVKKELQESIQRCKKAGISEDRII--IDPGFG------------QGNYGKNVSENFYLLNKL 221 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEE--EECCCC------------SGGGCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhHEE--EeCCCC------------chhhcCCHHHHHHHHHHH
Confidence 456666677777778642 444 566421 112666666555555544
No 103
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=42.52 E-value=1.3e+02 Score=28.89 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=34.3
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecC
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPD 217 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~ 217 (471)
..+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.++
T Consensus 6 ~~~ll~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~s--PvIlq~s~g 52 (323)
T 2isw_A 6 LRQMLGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKS--PVILQCSRG 52 (323)
T ss_dssp HHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTC--CEEEEEEHH
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEECChh
Confidence 345677787776 43 899999999999999998765 577888753
No 104
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=42.46 E-value=1e+02 Score=28.24 Aligned_cols=65 Identities=20% Similarity=0.058 Sum_probs=34.7
Q ss_pred EEEecccCC---cHHHHHHHHHcCC-ceEEc----CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE
Q 012098 120 IGYAIKANN---NYKILEHLRKLGC-GAVLV----SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF 185 (471)
Q Consensus 120 i~yavKaN~---~~~vl~~l~~~G~-g~~va----S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~ 185 (471)
+.+.+..+. ...+++.+.+.|+ .+++. ...|....++.-++ +-++=.|...+.++++.|++.|..
T Consensus 36 vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~-~~~iGaGTVlt~~~a~~Ai~AGA~ 108 (232)
T 4e38_A 36 VIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQP-EMLIGAGTILNGEQALAAKEAGAT 108 (232)
T ss_dssp EEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCT-TCEEEEECCCSHHHHHHHHHHTCS
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCC-CCEEeECCcCCHHHHHHHHHcCCC
Confidence 455555543 3456666666676 45553 23333333333332 334444555667777777777764
No 105
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=42.21 E-value=2.6e+02 Score=27.39 Aligned_cols=110 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCceEEcC-----HHHHHHHHHCCCCCCcEEEeCCCCc-----------------HHHHHHHHhCC--CEE
Q 012098 131 KILEHLRKLGCGAVLVS-----GNELRLALRAGFDPTKCIFNGNGKL-----------------LEDLVLAAQEG--VFV 186 (471)
Q Consensus 131 ~vl~~l~~~G~g~~vaS-----~~El~~a~~~G~~~~~Ii~~g~~k~-----------------~~~l~~a~~~g--v~i 186 (471)
..++.+.+.+....+.. ...++.+.++|+ +.|.+..+..+ .+-++.+.+.| +.+
T Consensus 55 ~~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~--~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v 132 (382)
T 2ztj_A 55 KDAEVLASLGLKAKVVTHIQCRLDAAKVAVETGV--QGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEV 132 (382)
T ss_dssp HHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTC--SEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHhcCCCcEEEEEcccChhhHHHHHHcCC--CEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEE
Q ss_pred EeC-------CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcC--CCCce
Q 012098 187 NVD-------SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAH--PNELK 257 (471)
Q Consensus 187 ~vD-------s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~--~~~l~ 257 (471)
.++ +.+.+..+.+.+.+. .. .|++. .+--...|.++.++++.+++. + .+.
T Consensus 133 ~~~~ed~~~~~~~~~~~~~~~~~~~-a~---~i~l~----------------DT~G~~~P~~~~~lv~~l~~~~~~-~~~ 191 (382)
T 2ztj_A 133 RFSAEDTFRSEEQDLLAVYEAVAPY-VD---RVGLA----------------DTVGVATPRQVYALVREVRRVVGP-RVD 191 (382)
T ss_dssp EEEETTTTTSCHHHHHHHHHHHGGG-CS---EEEEE----------------ETTSCCCHHHHHHHHHHHHHHHTT-TSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cC---EEEec----------------CCCCCCCHHHHHHHHHHHHHhcCC-CCe
Q ss_pred EEEEEee
Q 012098 258 LVGAHCH 264 (471)
Q Consensus 258 l~Glh~H 264 (471)
.++|+|
T Consensus 192 -i~~H~H 197 (382)
T 2ztj_A 192 -IEFHGH 197 (382)
T ss_dssp -EEEEEB
T ss_pred -EEEEeC
No 106
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=41.95 E-value=2.2e+02 Score=26.62 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred cHHHHHHHHhCCCE-E-EeCCH-----------------HHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCC
Q 012098 172 LLEDLVLAAQEGVF-V-NVDSE-----------------FDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232 (471)
Q Consensus 172 ~~~~l~~a~~~gv~-i-~vDs~-----------------~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~ 232 (471)
..+.++.+++.|+. + ++.+. +.+....+.+++.|..+.+.+-. .++. ...
T Consensus 82 ~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~--~~~~---------~~~ 150 (298)
T 2cw6_A 82 NLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSC--ALGC---------PYE 150 (298)
T ss_dssp SHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEET--TTCB---------TTT
T ss_pred CHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEE--EeeC---------CcC
Confidence 46789999998862 2 22222 24445566777777654333221 1100 001
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHH
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAV 280 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~ 280 (471)
++ .+++.+.++++.+.+. +...+.|.=-.| ...+..+.+.++
T Consensus 151 ~~--~~~~~~~~~~~~~~~~--Ga~~i~l~DT~G--~~~P~~~~~lv~ 192 (298)
T 2cw6_A 151 GK--ISPAKVAEVTKKFYSM--GCYEISLGDTIG--VGTPGIMKDMLS 192 (298)
T ss_dssp BS--CCHHHHHHHHHHHHHT--TCSEEEEEETTS--CCCHHHHHHHHH
T ss_pred CC--CCHHHHHHHHHHHHHc--CCCEEEecCCCC--CcCHHHHHHHHH
Confidence 22 4678899999988887 566665654454 345665554443
No 107
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=41.70 E-value=2e+02 Score=28.07 Aligned_cols=147 Identities=18% Similarity=0.076 Sum_probs=76.6
Q ss_pred EEeHHHHHHHHHHHHHHhcCCCceEEEecccCC-cHHHHHHHHHcC--C---ceEEcCHHHHHHHHH----CCCCCCcE-
Q 012098 96 LYSKPQITRNVEAYKQALEGLNSIIGYAIKANN-NYKILEHLRKLG--C---GAVLVSGNELRLALR----AGFDPTKC- 164 (471)
Q Consensus 96 v~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~-~~~vl~~l~~~G--~---g~~vaS~~El~~a~~----~G~~~~~I- 164 (471)
.++.+.-.+-++.+.++ .=...++.++. +++ ..+.++.+.+.. . .+.-+....++.+.+ +|.+ +|
T Consensus 30 ~~~~~~Kl~ia~~L~~~-Gv~~IE~g~p~-~~~~d~e~v~~i~~~~~~~~i~~l~r~~~~di~~a~~al~~ag~~--~v~ 105 (370)
T 3rmj_A 30 AMTKEEKIRVARQLEKL-GVDIIEAGFAA-ASPGDFEAVNAIAKTITKSTVCSLSRAIERDIRQAGEAVAPAPKK--RIH 105 (370)
T ss_dssp CCCHHHHHHHHHHHHHH-TCSEEEEEEGG-GCHHHHHHHHHHHTTCSSSEEEEEEESSHHHHHHHHHHHTTSSSE--EEE
T ss_pred CcCHHHHHHHHHHHHHc-CCCEEEEeCCC-CCHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHhhCCCC--EEE
Confidence 35666666666665543 21123566654 333 224455555542 2 233356788888877 6663 44
Q ss_pred EEeCC---------CCcHHH--------HHHHHhCCCE--EEe-----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCC
Q 012098 165 IFNGN---------GKLLED--------LVLAAQEGVF--VNV-----DSEFDLENIVVASRIAGKKVNVLLRINPDVDP 220 (471)
Q Consensus 165 i~~g~---------~k~~~~--------l~~a~~~gv~--i~v-----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~ 220 (471)
+|... .++.++ ++.|.++|.. +.. .+.+.+..+.+.+.+.|.. .|.+.
T Consensus 106 if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~---~i~l~----- 177 (370)
T 3rmj_A 106 TFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGAT---TINIP----- 177 (370)
T ss_dssp EEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCC---EEEEE-----
T ss_pred EEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCC---EEEec-----
Confidence 33322 122222 2233345643 333 3455566666666667754 24443
Q ss_pred CCCcccccCCCCCCCCCCHhHHHHHHHHHHc-CCCCc--eEEEEEeecC
Q 012098 221 QVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-HPNEL--KLVGAHCHLG 266 (471)
Q Consensus 221 ~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~-~~~~l--~l~Glh~H~G 266 (471)
+|- -..+|.++.++++.+++ .+ +. ...++|+|--
T Consensus 178 ------DT~-----G~~~P~~~~~lv~~l~~~~~-~~~~~~l~~H~Hnd 214 (370)
T 3rmj_A 178 ------DTV-----GYSIPYKTEEFFRELIAKTP-NGGKVVWSAHCHND 214 (370)
T ss_dssp ------CSS-----SCCCHHHHHHHHHHHHHHST-TGGGSEEEEECBCT
T ss_pred ------Ccc-----CCcCHHHHHHHHHHHHHhCC-CcCceEEEEEeCCC
Confidence 121 13467888888887765 33 31 4678999953
No 108
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=41.34 E-value=99 Score=29.31 Aligned_cols=95 Identities=23% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecC-------CC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLG-------ST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHT 312 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~G-------s~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y~~~ 312 (471)
+.++.+.++++ ++.+..++.+.. +- ..+.+..+.+++.+.+.++..++.|. ++|.+.+|. |..|...
T Consensus 63 ~~~l~~~l~~~--Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa--~~vv~~~g~~g~~~~~~ 138 (333)
T 3ktc_A 63 LSEVKDALKDA--GLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGA--NYVKVWPGQDGWDYPFQ 138 (333)
T ss_dssp HHHHHHHHHHH--TCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTC--SEEEECCTTCEESSTTS
T ss_pred HHHHHHHHHHc--CCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCC--CEEEECCCCCCcCCCCc
Confidence 34444455555 789988887532 11 23555566677777777776667675 456666653 3333211
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCcEEEEc
Q 012098 313 GAVLPKPRNLIDTVRELVLS-RNLNLIIE 340 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~E 340 (471)
.......+.+++.+++++.. .++.+.+|
T Consensus 139 ~~~~~~~~~~~~~l~~l~~~a~~~~i~lE 167 (333)
T 3ktc_A 139 VSHKNLWKLAVDGMRDLAGANPDVKFAIE 167 (333)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCTTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 10000134556666666543 24566666
No 109
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=41.27 E-value=49 Score=31.67 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=58.4
Q ss_pred HHHHHHCC-CCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHH--HHHHHHHH-HHcCCceEEEEEEecCCCCCC
Q 012098 151 LRLALRAG-FDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFD--LENIVVAS-RIAGKKVNVLLRINPDVDPQV 222 (471)
Q Consensus 151 l~~a~~~G-~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~~a-~~~g~~~~V~lRin~~~~~~~ 222 (471)
+..+.+.| ++++++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+.+ ...+ .-.|.|=++.+.-...
T Consensus 164 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~v~~~~~~~~~-~~~vylSiDiDvLDpa 242 (313)
T 1gq6_A 164 FRHGIDEKLIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGVGGTADLIREKVG-QRPVYVSVDIDVVDPA 242 (313)
T ss_dssp HHHHHHTTSEEEEEEEEEEECCC------CHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEGGGBCTT
T ss_pred HHHhhhccCCCCCcEEEEEecCCCCCHHHHHHHHHcCCEEEEHHHHhhcCHHHHHHHHHHHcC-CCeEEEEEeecCcCcc
Confidence 44455544 355688877864 256777888888986 55544432 12222222 2223 2256777765432111
Q ss_pred CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 223 HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 223 ~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.. -.|| .....|++..|+.++++.+.. .+++|+..-
T Consensus 243 ~a-Pgtg-tp~pgGlt~~e~~~~l~~l~~----~~vvg~Div 278 (313)
T 1gq6_A 243 FA-PGTG-TPAPGGLLSREVLALLRCVGD----LKPVGFDVM 278 (313)
T ss_dssp TC-CSBS-SCCSSCBCHHHHHHHGGGGGG----SEEEEEEEE
T ss_pred cC-CCCC-CCCCCCCCHHHHHHHHHHHcc----CCeEEEEEE
Confidence 10 1122 467899999999998887742 468887764
No 110
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=40.84 E-value=1.4e+02 Score=28.82 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=31.6
Q ss_pred ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 207 KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 207 ~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
...|++|+++.. ...-|.+.++..++++.+.+. ++.. ||.|.|.
T Consensus 209 ~~pv~vRls~~~-------------~~~~g~~~~~~~~la~~L~~~--Gvd~--i~vs~g~ 252 (340)
T 3gr7_A 209 DGPLFVRISASD-------------YHPDGLTAKDYVPYAKRMKEQ--GVDL--VDVSSGA 252 (340)
T ss_dssp CSCEEEEEESCC-------------CSTTSCCGGGHHHHHHHHHHT--TCCE--EEEECCC
T ss_pred CCceEEEecccc-------------ccCCCCCHHHHHHHHHHHHHc--CCCE--EEEecCC
Confidence 567999999752 122377888999999998887 5554 6777654
No 111
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=39.91 E-value=2.5e+02 Score=26.57 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=46.4
Q ss_pred cHHHHHHHHhCCCE-E-EeCC-----------------HHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCC
Q 012098 172 LLEDLVLAAQEGVF-V-NVDS-----------------EFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKN 232 (471)
Q Consensus 172 ~~~~l~~a~~~gv~-i-~vDs-----------------~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~ 232 (471)
..+.++.+++.|+. + ++.+ ++.+....+.+++.|..+.+.|-...+ . ...
T Consensus 83 ~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~--~---------~~~ 151 (307)
T 1ydo_A 83 NQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFG--C---------PYE 151 (307)
T ss_dssp SHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTC--B---------TTT
T ss_pred CHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEec--C---------CcC
Confidence 46778888887752 2 2222 234455666777777643332211110 0 001
Q ss_pred CCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHH
Q 012098 233 SKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRD 277 (471)
Q Consensus 233 sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~ 277 (471)
+ -.+++.+.++++.+.+. +...+.|.=-.| ...+..+.+
T Consensus 152 ~--~~~~~~~~~~~~~~~~~--Ga~~i~l~DT~G--~~~P~~v~~ 190 (307)
T 1ydo_A 152 K--DVPIEQVIRLSEALFEF--GISELSLGDTIG--AANPAQVET 190 (307)
T ss_dssp B--CCCHHHHHHHHHHHHHH--TCSCEEEECSSC--CCCHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHhc--CCCEEEEcCCCC--CcCHHHHHH
Confidence 1 14677888888877776 455555554444 345654443
No 112
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=39.51 E-value=77 Score=29.73 Aligned_cols=75 Identities=16% Similarity=0.050 Sum_probs=47.9
Q ss_pred CCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEEeC-----CHHHHHHHHH
Q 012098 127 NNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVNVD-----SEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~vD-----s~~el~~l~~ 199 (471)
+.++.-++.+. +.|+.. ..+..|+.. +.+-++...|. ...+.+..+++.|..+.++ +.+|++.+.+
T Consensus 39 d~~~~~~~~~a~~~~~~~-~~~~~~ll~------~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~ 111 (308)
T 3uuw_A 39 TPNKVKREKICSDYRIMP-FDSIESLAK------KCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIE 111 (308)
T ss_dssp CSCHHHHHHHHHHHTCCB-CSCHHHHHT------TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCC-cCCHHHHHh------cCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHH
Confidence 44555455444 347654 567777653 33444444443 3345567788899876665 9999999999
Q ss_pred HHHHcCCce
Q 012098 200 ASRIAGKKV 208 (471)
Q Consensus 200 ~a~~~g~~~ 208 (471)
++++.|..+
T Consensus 112 ~a~~~g~~~ 120 (308)
T 3uuw_A 112 LSTKKNLNL 120 (308)
T ss_dssp HHHHHTCCE
T ss_pred HHHHcCCEE
Confidence 998877543
No 113
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=39.35 E-value=1.2e+02 Score=27.36 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=56.6
Q ss_pred CcEE-EEeHHHHHHHHHHHHHHhcC-CCceEEEecccCCcHHHHHHHHHc-C-----CceEEcCHHHHHHHHHCCCCCCc
Q 012098 92 RPFY-LYSKPQITRNVEAYKQALEG-LNSIIGYAIKANNNYKILEHLRKL-G-----CGAVLVSGNELRLALRAGFDPTK 163 (471)
Q Consensus 92 tP~~-v~d~~~l~~n~~~~~~a~~~-~~~~i~yavKaN~~~~vl~~l~~~-G-----~g~~vaS~~El~~a~~~G~~~~~ 163 (471)
.|+. |+......+-++..++++.+ .. .+-+..|.......++.+.+. . .|. +.+..+++.|+++|. +
T Consensus 17 ~~ii~vir~~~~~~~~~~~~al~~gGv~-~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl~~d~~~~A~~aGA---d 91 (224)
T 1vhc_A 17 LKIVPVIALDNADDILPLADTLAKNGLS-VAEITFRSEAAADAIRLLRANRPDFLIAAGT-VLTAEQVVLAKSSGA---D 91 (224)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCC-EEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CCSHHHHHHHHHHTC---S
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHcCCC-EEEEeccCchHHHHHHHHHHhCcCcEEeeCc-EeeHHHHHHHHHCCC---C
Confidence 4443 33433334444444444443 22 244557766656666655443 1 233 347889999999886 3
Q ss_pred EEEeCCCCcHHHHHHHHhCCC--EEEeCCHHHHHHH
Q 012098 164 CIFNGNGKLLEDLVLAAQEGV--FVNVDSEFDLENI 197 (471)
Q Consensus 164 Ii~~g~~k~~~~l~~a~~~gv--~i~vDs~~el~~l 197 (471)
.+..+ ..+.+-++.+.+.|+ .+-+.+.+|+...
T Consensus 92 ~v~~p-~~d~~v~~~ar~~g~~~i~Gv~t~~e~~~A 126 (224)
T 1vhc_A 92 FVVTP-GLNPKIVKLCQDLNFPITPGVNNPMAIEIA 126 (224)
T ss_dssp EEECS-SCCHHHHHHHHHTTCCEECEECSHHHHHHH
T ss_pred EEEEC-CCCHHHHHHHHHhCCCEEeccCCHHHHHHH
Confidence 45544 456555677777775 3457888877553
No 114
>3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A*
Probab=38.83 E-value=1.5e+02 Score=28.96 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCceEEcC------HHHHHHHHHCCCCCCcEEEeC--CCCcHHHHHHHHhCCCEEEeCC------------
Q 012098 131 KILEHLRKLGCGAVLVS------GNELRLALRAGFDPTKCIFNG--NGKLLEDLVLAAQEGVFVNVDS------------ 190 (471)
Q Consensus 131 ~vl~~l~~~G~g~~vaS------~~El~~a~~~G~~~~~Ii~~g--~~k~~~~l~~a~~~gv~i~vDs------------ 190 (471)
..+++..+.|+-+-+-+ ...++.+++.|++++++++.. ...+.+.++.+++.|+.+.+|.
T Consensus 197 A~a~aa~etG~Pv~iHt~~~~~~~e~l~iL~eeG~~~~~vvi~H~~~~~d~~~~~~~l~~G~yl~fD~iG~~~~~~~p~d 276 (360)
T 3tn4_A 197 AAARAQKETGAVIITHTQEGTMGPEQAAYLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTD 276 (360)
T ss_dssp HHHHHHHHHCCEEEEECSTTCCHHHHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHHTTTCEEEECCTTCCCSTTCCCH
T ss_pred HHHHHHHHhCCcEEEEcCcccCCHHHHHHHHHcCCCCCceEEEcCCCCCCHHHHHHHHHcCCEEEEcccccccccCCCCh
Confidence 44445555676554432 356777788999999987633 3356788889999999888774
Q ss_pred HHHHHHHHHHHHHcCCceEEEEEEe
Q 012098 191 EFDLENIVVASRIAGKKVNVLLRIN 215 (471)
Q Consensus 191 ~~el~~l~~~a~~~g~~~~V~lRin 215 (471)
.+-++.|.+++++ +..=+|+|--+
T Consensus 277 ~~r~~~l~~lv~~-g~~drILLstD 300 (360)
T 3tn4_A 277 EERVRTLLALLRD-GYEKQIMLSHD 300 (360)
T ss_dssp HHHHHHHHHHHHT-TCGGGEEECCC
T ss_pred HHHHHHHHHHHHh-cCcceEEEecC
Confidence 4445566665543 54446777433
No 115
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=38.74 E-value=58 Score=31.30 Aligned_cols=106 Identities=20% Similarity=0.252 Sum_probs=60.4
Q ss_pred HHHHHHCC-CCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHH--HHHHHH-HHHHcCCceEEEEEEecCCCCCC
Q 012098 151 LRLALRAG-FDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFD--LENIVV-ASRIAGKKVNVLLRINPDVDPQV 222 (471)
Q Consensus 151 l~~a~~~G-~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~-~a~~~g~~~~V~lRin~~~~~~~ 222 (471)
+..+++.| ++++++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+ +.+..+ .-.|.|=++.+.-...
T Consensus 172 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~-~~~vylSiDiDvLDpa 250 (319)
T 3nio_A 172 FRRAVEEDLLDCDRVVQIGLRAQGYTAEDFNWSRXQGFRVVQAEECWHXSLEPLMAEVREXVG-GGPVYLSFDIDGIDPA 250 (319)
T ss_dssp HHHHHHTTCEEEEEEEEEEECSEESSTHHHHHHHHHTCEEEEGGGTTTCCSHHHHHHHHHHHC-SSEEEEEEEGGGBCTT
T ss_pred HHHHhhccCCCCCcEEEEEeCCCCCCHHHHHHHHhcCcEEEEHHHhhhcCHHHHHHHHHHhcC-CCcEEEEEecCccChh
Confidence 34455554 345678877754 356788888888986 45443322 122222 212223 2357777765432111
Q ss_pred -CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 223 -HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 223 -~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
-+ .|| .....|++..|+.++++.+. +.+++|+..-
T Consensus 251 ~aP--gtg-tp~pgGlt~~e~~~~l~~l~----~~~vvg~Div 286 (319)
T 3nio_A 251 WAP--GTG-TPEIGGLTTIQAMEIIRGCQ----GLDLIGCDLV 286 (319)
T ss_dssp TCC--CBS-SCCSSCBCHHHHHHHHHTTT----TSEEEEEEEE
T ss_pred hCC--CCC-CCCCCCCCHHHHHHHHHHhc----cCCeeEEEEE
Confidence 11 122 35778999999988887652 4578888764
No 116
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=38.70 E-value=17 Score=28.64 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=40.0
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEE
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~ 465 (471)
.+.+++.. ......+|.|.|.- |+.+-.-..---..++||.|+|..-+-+...-..+ .+|.+|+++.+..+
T Consensus 18 ~V~IvNvn-NG~RfeTYvI~Ger--SG~I~lNGAAArl~~~GD~vII~aY~~~~~~e~~~----~~P~vV~vd~~N~i 88 (97)
T 1uhe_A 18 KVEIVDVN-NGERFSTYVILGKK--RGEICVNGAAARKVAIGDVVIILAYASMNEDEINA----HKPSIVLVDEKNEI 88 (97)
T ss_dssp EEEEEETT-TCCEEEEECEEECS--TTCEEEEGGGGGGCCTTCEEEEEEEEEECHHHHHH----CCCEEEEECTTSCE
T ss_pred EEEEEECC-CCceEEEEEEeecc--CCeEEEchHHHccCCCCCEEEEEECccCCHHHHhc----CCCEEEEECCCCCE
Confidence 44455432 22346678899977 55443221111125889999998544333322223 36999999866543
No 117
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=38.58 E-value=98 Score=29.86 Aligned_cols=105 Identities=9% Similarity=0.000 Sum_probs=65.3
Q ss_pred HHHHHHHHc-CC--ceE-----EcCHHHHHHHHHCCCCCCcEEEeCCCC-cHHHHHHHHhCCCEEEe---CCHHHHHHHH
Q 012098 131 KILEHLRKL-GC--GAV-----LVSGNELRLALRAGFDPTKCIFNGNGK-LLEDLVLAAQEGVFVNV---DSEFDLENIV 198 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~-----vaS~~El~~a~~~G~~~~~Ii~~g~~k-~~~~l~~a~~~gv~i~v---Ds~~el~~l~ 198 (471)
.+++.+.+. ++ .+| .....-++.++++|.....++..-... .++.+..+.++|+.+++ ++++.++.+.
T Consensus 119 ~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~ 198 (323)
T 4djd_D 119 ATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLN 198 (323)
T ss_dssp HHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred HHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHH
Confidence 455555543 44 445 445677888888886433466544332 24566777788875443 3577888888
Q ss_pred HHHHHcCCce-EEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc
Q 012098 199 VASRIAGKKV-NVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA 251 (471)
Q Consensus 199 ~~a~~~g~~~-~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~ 251 (471)
+.+.+.|.+. +|. ++|+ ..-||-..++..+++++++.
T Consensus 199 ~~a~~~GI~~e~II--lDPg--------------~g~fgk~~e~~l~~l~~ir~ 236 (323)
T 4djd_D 199 ILINEMNLPLDHIV--IDPS--------------IGGLGYGIEYSFSIMERIRL 236 (323)
T ss_dssp HHHHTTTCCGGGEE--EECC--------------CCCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHEE--EeCC--------------CccccCCHHHHHHHHHHHHH
Confidence 8888888643 443 4554 23477777777777776653
No 118
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=38.38 E-value=1e+02 Score=29.49 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=57.3
Q ss_pred CCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHH------HHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCC
Q 012098 160 DPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFD------LENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNK 231 (471)
Q Consensus 160 ~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~e------l~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~ 231 (471)
+++++++.|.- .+.++.+.+.+.|+. +..+.+.+ ++.+.+..+..+ .-.|.|=++.+.-..... -.|| .
T Consensus 170 ~~~~~~~iGiR~~~~~e~~~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~l~~~~-~~~vylSiDiDvLDpa~a-Pgtg-t 246 (322)
T 2aeb_A 170 SAKDIVYIGLRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRK-KRPIHLSFDVDGLDPSFT-PATG-T 246 (322)
T ss_dssp CGGGEEEEEECCCCHHHHHHHHHHTCEEEEHHHHHHHCHHHHHHHHHHHHHSSS-CCCEEEEEEGGGBCTTTC-CSBS-S
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCCEEEEHHHHHhhCHHHHHHHHHHHHhhcC-CCeEEEEEecCcCCcccc-CCCC-C
Confidence 45688877742 356778888888986 55554432 122222221012 224666666443211110 1133 4
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
....|++..|+..+++.+.+. .+++|+..-
T Consensus 247 p~pgGlt~~e~~~~l~~l~~~---~~vvg~Div 276 (322)
T 2aeb_A 247 PVVGGLTYREGLYITEEIYKT---GLLSGLDIM 276 (322)
T ss_dssp CCSSCBCHHHHHHHHHHHHHH---SCEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHcc---CCEEEEEEE
Confidence 678999999999999988753 358887764
No 119
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=38.12 E-value=72 Score=30.23 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCCCCce---EEEE-EeecCCCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec
Q 012098 240 EKLQWFLDAVKAHPNELK---LVGA-HCHLGSTI--TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG 302 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~---l~Gl-h~H~Gs~~--~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG 302 (471)
+++.++.+.++++ ++. +..+ |+..+... .+.+..+++++.+.+.++..++.|. ++| +|
T Consensus 65 ~~~~~l~~~l~~~--gL~~~~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~--~~v-~~ 128 (335)
T 2qw5_A 65 ENYTNLRHYLDSE--GLENVKISTNVGATRTFDPSSNYPEQRQEALEYLKSRVDITAALGG--EIM-MG 128 (335)
T ss_dssp HHHHHHHHHHHHT--TCTTCEEEEECCCCSSSCTTCSSHHHHHHHHHHHHHHHHHHHHTTC--SEE-EE
T ss_pred HHHHHHHHHHHHC--CCCcceeEEEeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEE-ec
Confidence 4566666777777 688 8774 33221111 2455556667777777777777775 455 44
No 120
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=37.98 E-value=73 Score=30.53 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=58.7
Q ss_pred HHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCE-EEeCCHHH--HHHHHHHHHHcCCceEEEEEEecCCCC-CCCcccc
Q 012098 153 LALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVF-VNVDSEFD--LENIVVASRIAGKKVNVLLRINPDVDP-QVHPYVA 227 (471)
Q Consensus 153 ~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~-i~vDs~~e--l~~l~~~a~~~g~~~~V~lRin~~~~~-~~~~~~~ 227 (471)
.+++.+ ++.++++.|.- .++++.+.+.+.|+. +..+.+.+ ++.+.+..++.+ -.|.|=++.+.-. ..-+ .
T Consensus 166 ~~~e~~-~~~~~~~iGiR~~~~~e~~~~~~~gi~~~~~~ei~~~g~~~v~~~i~~~~--~~vylSiDiDvLDpa~aP--g 240 (313)
T 3pzl_A 166 RALDLL-GEGRITSIGIRSVSREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVDRKS--RRVYISVDMDGIDPAYAP--A 240 (313)
T ss_dssp HHHHHH-CSSSEEEEEECBCCHHHHTSGGGGGSEEEEHHHHHHHCSHHHHHHHHHHC--SEEEEEEEGGGBCTTTCT--T
T ss_pred HHHhcC-CCCeEEEEeCCCCCHHHHHHHHHCCCEEEEHHHHhhhhHHHHHHHHhccC--CeEEEEEeccccChhhCC--C
Confidence 344433 45788877752 356777777777885 55544433 233333333333 2566666644321 1111 1
Q ss_pred cCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 228 TGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 228 tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
|| .....|++..|+..+++.+.+ +++|+..-
T Consensus 241 tg-tp~pgGlt~~e~~~il~~l~~-----~vvg~Div 271 (313)
T 3pzl_A 241 VG-TPEPFGLADTDVRRLIERLSY-----KAVGFDIV 271 (313)
T ss_dssp BS-SCCSSCBCHHHHHHHHHHHGG-----GEEEEEEE
T ss_pred CC-CCCCCCCCHHHHHHHHHHHhc-----CeEEEEEE
Confidence 33 367899999999999988753 57777664
No 121
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=37.15 E-value=85 Score=30.07 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=54.6
Q ss_pred HHHHhcCCCcEEEEeHHHHHHHHHHHHHHhcCCC--ceEEEecccCCcHHHHHHHHHcCCceEEcCH---HHH----HHH
Q 012098 84 DVMETVEKRPFYLYSKPQITRNVEAYKQALEGLN--SIIGYAIKANNNYKILEHLRKLGCGAVLVSG---NEL----RLA 154 (471)
Q Consensus 84 ~l~~~~~~tP~~v~d~~~l~~n~~~~~~a~~~~~--~~i~yavKaN~~~~vl~~l~~~G~g~~vaS~---~El----~~a 154 (471)
.+.+.. +-|+-|.|-..-+.+.+.+++++.... --+...+-....+.+++.+.+.|+.+-+.+. ..+ ..+
T Consensus 116 ~v~~~~-~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~~~~a 194 (310)
T 2h9a_B 116 AVADAI-DVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQLNIMI 194 (310)
T ss_dssp HHHHHC-SSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHH
T ss_pred HHHHhC-CceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHHHHHH
Confidence 344444 789876476444555566666654311 1267777776788999999999987776653 222 334
Q ss_pred HHCCCCCCcEEEeC
Q 012098 155 LRAGFDPTKCIFNG 168 (471)
Q Consensus 155 ~~~G~~~~~Ii~~g 168 (471)
.++|+++++|++..
T Consensus 195 ~~~Gi~~e~IilDP 208 (310)
T 2h9a_B 195 MEMNLAPNRIIMDP 208 (310)
T ss_dssp HTTTCCGGGEEEEC
T ss_pred HHCCCChhhEEEeC
Confidence 46899999998764
No 122
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=37.02 E-value=1.6e+02 Score=26.42 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
..++.+++.++.+.++++ ++.+..+|..... ..+.+++. ++..++.|. ++|.+..|-
T Consensus 58 ~~~~~~~~~~~~~~l~~~--gl~i~~~~~~~~~---~~~~~~~~-------i~~A~~lGa--~~v~~~~~~--------- 114 (262)
T 3p6l_A 58 FNLDAQTQKEIKELAASK--GIKIVGTGVYVAE---KSSDWEKM-------FKFAKAMDL--EFITCEPAL--------- 114 (262)
T ss_dssp TTCCHHHHHHHHHHHHHT--TCEEEEEEEECCS---STTHHHHH-------HHHHHHTTC--SEEEECCCG---------
T ss_pred ccCCHHHHHHHHHHHHHc--CCeEEEEeccCCc---cHHHHHHH-------HHHHHHcCC--CEEEecCCH---------
Confidence 356677788888888887 7999999887542 22333332 233333444 566665331
Q ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEcccc
Q 012098 315 VLPKPRNLIDTVRELVLSRNLNLIIEPGR 343 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~~~~~l~~EpGR 343 (471)
..+ +.+.+...++|+++.+|+-.
T Consensus 115 --~~~----~~l~~~a~~~gv~l~~En~~ 137 (262)
T 3p6l_A 115 --SDW----DLVEKLSKQYNIKISVHNHP 137 (262)
T ss_dssp --GGH----HHHHHHHHHHTCEEEEECCS
T ss_pred --HHH----HHHHHHHHHhCCEEEEEeCC
Confidence 012 34455556789999999853
No 123
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=36.87 E-value=1.3e+02 Score=28.95 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=53.2
Q ss_pred HHHHHHHHHCCCCCCcEEEeCC--------CCcH----HH----HHHHHhCCCE--EEeCC--------HHHHHHHHHHH
Q 012098 148 GNELRLALRAGFDPTKCIFNGN--------GKLL----ED----LVLAAQEGVF--VNVDS--------EFDLENIVVAS 201 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~--------~k~~----~~----l~~a~~~gv~--i~vDs--------~~el~~l~~~a 201 (471)
..+++.+.++|++.-+|.+... .++. +. ++.|.+.|.. +.+.. .+.+..+.+.+
T Consensus 99 ~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (337)
T 3ble_A 99 NKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHL 178 (337)
T ss_dssp THHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHH
T ss_pred hhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHH
Confidence 3478888888875333332211 0111 12 3344467864 55544 45555555555
Q ss_pred HHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc-CCCCceEEEEEeecCC
Q 012098 202 RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-HPNELKLVGAHCHLGS 267 (471)
Q Consensus 202 ~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~-~~~~l~l~Glh~H~Gs 267 (471)
.+.|.. .|.+. +|-| ...+.++.++++.+++ .| .+ ..++|+|--.
T Consensus 179 ~~~Ga~---~i~l~-----------DT~G-----~~~P~~v~~lv~~l~~~~p-~~-~i~~H~Hnd~ 224 (337)
T 3ble_A 179 SKEHIE---RIFLP-----------DTLG-----VLSPEETFQGVDSLIQKYP-DI-HFEFHGHNDY 224 (337)
T ss_dssp HTSCCS---EEEEE-----------CTTC-----CCCHHHHHHHHHHHHHHCT-TS-CEEEECBCTT
T ss_pred HHcCCC---EEEEe-----------cCCC-----CcCHHHHHHHHHHHHHhcC-CC-eEEEEecCCc
Confidence 566643 23343 1211 2468888888888765 33 33 4689999643
No 124
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=36.28 E-value=3e+02 Score=26.41 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCceEEEecccCCcH-HHHHHHHHcC
Q 012098 103 TRNVEAYKQALEGLNSIIGYAIKANNNY-KILEHLRKLG 140 (471)
Q Consensus 103 ~~n~~~~~~a~~~~~~~i~yavKaN~~~-~vl~~l~~~G 140 (471)
..+.+++.+++++.+++++-.=|+.|.. .+.+.....|
T Consensus 154 AT~t~~~v~aa~g~~~~i~~TRKT~PglR~l~kyAV~~G 192 (320)
T 3paj_A 154 ATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAVACG 192 (320)
T ss_dssp HHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCccchHHHhhhHHhc
Confidence 3445667777776677888888998853 3334444444
No 125
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=36.22 E-value=1.5e+02 Score=28.09 Aligned_cols=102 Identities=21% Similarity=0.119 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCCC-cHHHHHHHHhCCCEEEe-CC---------------
Q 012098 130 YKILEHLRKLGC--GAVLVSGNELRLALRAGFDPTKCIFNGNGK-LLEDLVLAAQEGVFVNV-DS--------------- 190 (471)
Q Consensus 130 ~~vl~~l~~~G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k-~~~~l~~a~~~gv~i~v-Ds--------------- 190 (471)
..+++.+.+.++ .+|......++.|+++|. .|+..-.+. .++.+..+.++|+.+++ ..
T Consensus 87 ~pvi~~l~~~~vpiSIDT~~~~Va~aAl~aGa---~iINdVsg~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~ 163 (294)
T 2y5s_A 87 IPLVEALRPLNVPLSIDTYKPAVMRAALAAGA---DLINDIWGFRQPGAIDAVRDGNSGLCAMHMLGEPQTMQVGEPDYG 163 (294)
T ss_dssp HHHHHHHGGGCSCEEEECCCHHHHHHHHHHTC---SEEEETTTTCSTTHHHHHSSSSCEEEEECCCEETTTTEECCCCCS
T ss_pred HHHHHHHhhCCCeEEEECCCHHHHHHHHHcCC---CEEEECCCCCchHHHHHHHHhCCCEEEECCCCCCccccccCCccc
Confidence 355566654464 788888999999999986 476654333 45567777788875333 21
Q ss_pred ------HHHHHHHHHHHHHcCCc-eEEEEEEecCCCCCCCcccccCCCCCCCCCCH-hHHHHHHHHHHc
Q 012098 191 ------EFDLENIVVASRIAGKK-VNVLLRINPDVDPQVHPYVATGNKNSKFGIRN-EKLQWFLDAVKA 251 (471)
Q Consensus 191 ------~~el~~l~~~a~~~g~~-~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~-~el~~~l~~l~~ 251 (471)
.+.++...+.+.+.|.+ -+|. ++|+. -||=+. ++-.++++.+..
T Consensus 164 dv~~ev~~~l~~~i~~a~~~Gi~~~~Ii--lDPG~---------------Gf~kt~~~~n~~ll~~l~~ 215 (294)
T 2y5s_A 164 DVVTDVRDFLAARAQALRDAGVAAERIC--VDPGF---------------GFGKAVVDDNYALLAALPD 215 (294)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCGGGEE--EECCT---------------TSSSCTTHHHHHHHHTGGG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCChhhEE--EeCCC---------------cccccchHHHHHHHHHHHH
Confidence 55666666777777754 2444 45542 144445 665666666543
No 126
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=35.62 E-value=1.1e+02 Score=29.26 Aligned_cols=128 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred cHHHHHHHHhCC--CE-EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 172 LLEDLVLAAQEG--VF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 172 ~~~~l~~a~~~g--v~-i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
..+.|+.|.+.| |- +++.|++.++.+.++|++.+. .|.|.+.++ ..+| ...+-+..+++.
T Consensus 5 ~~~ll~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~s--PvIlq~s~g--------------~~~y-~g~~~~~~~v~~ 67 (307)
T 3n9r_A 5 GNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENS--PLFIQASEG--------------AIKY-MGIDMAVGMVKI 67 (307)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHHHHHTC--CEEEEEEHH--------------HHHH-HCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCC--CEEEEcChh--------------hhhh-CCHHHHHHHHHH
Confidence 346677777665 44 899999999999999998764 577888653 1111 112334444444
Q ss_pred HHc-CCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHHHHH---
Q 012098 249 VKA-HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLID--- 324 (471)
Q Consensus 249 l~~-~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~~~~--- 324 (471)
+.+ .. .+ .+.||.--|. +.+...+++ +.|++=-++| |.-+ | +++=++
T Consensus 68 aa~~~~-~V-PValHLDHg~---~~e~~~~ai-----------~~GFtSVMiD-gS~~-----------p-~eeNi~~Tk 118 (307)
T 3n9r_A 68 MCERYP-HI-PVALHLDHGT---TFESCEKAV-----------KAGFTSVMID-ASHH-----------A-FEENLELTS 118 (307)
T ss_dssp HHHHST-TS-CEEEEEEEEC---SHHHHHHHH-----------HHTCSEEEEC-CTTS-----------C-HHHHHHHHH
T ss_pred HHHhcC-CC-cEEEECCCCC---CHHHHHHHH-----------HhCCCcEEEE-CCCC-----------C-HHHHHHHHH
Confidence 433 22 34 3557764442 333332221 2355433444 2222 2 333233
Q ss_pred HHHHHHhcCCcEEEEccccee
Q 012098 325 TVRELVLSRNLNLIIEPGRSL 345 (471)
Q Consensus 325 ~i~~~~~~~~~~l~~EpGR~l 345 (471)
.+-+.+...|+.+-.|.|+--
T Consensus 119 ~vv~~ah~~gvsVEaELG~ig 139 (307)
T 3n9r_A 119 KVVKMAHNAGVSVEAELGRLM 139 (307)
T ss_dssp HHHHHHHHTTCEEEEEESCCC
T ss_pred HHHHHHHHcCCeEEEEeeeec
Confidence 344455678999999999763
No 127
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=35.49 E-value=72 Score=29.21 Aligned_cols=98 Identities=10% Similarity=0.009 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecC---C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEe--cCCCCcC-CCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLG---S-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNI--GGGLGID-YYHT 312 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~G---s-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldi--GGGl~i~-y~~~ 312 (471)
+++.++.+.++++ ++.+.+++ ..+ . ...+.+..++.++.+.+.++..++.|.+ ++.+ -.+.|.+ +...
T Consensus 47 ~~~~~~~~~l~~~--gl~~~~~~-~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~~~~g~~~~~~~ 121 (290)
T 2qul_A 47 AKKRELKAVADDL--GLTVMCCI-GLKSEYDFASPDKSVRDAGTEYVKRLLDDCHLLGAP--VFAGLTFCAWPQSPPLDM 121 (290)
T ss_dssp HHHHHHHHHHHHH--TCEEEEEE-EECGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCS--EEEEEEEEESSCCCCTTC
T ss_pred hhHHHHHHHHHHc--CCceEEec-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEeeccccCCcccCCCc
Confidence 5566666777776 68888744 211 1 1234444555666666667666666754 3432 1111211 1110
Q ss_pred CCCCCCHHHHHHHHHH---HHhcCCcEEEEccc
Q 012098 313 GAVLPKPRNLIDTVRE---LVLSRNLNLIIEPG 342 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~---~~~~~~~~l~~EpG 342 (471)
.......+.+.+.+++ ...++|+++.+|+-
T Consensus 122 ~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~ 154 (290)
T 2qul_A 122 KDKRPYVDRAIESVRRVIKVAEDYGIIYALEVV 154 (290)
T ss_dssp CCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 0000012334444443 33457999999984
No 128
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=34.43 E-value=3.1e+02 Score=26.11 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=39.7
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeec-------CCCCC------CHHHHHH-HHHHHHHHHHHHHHcCCCCCEEEecC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHL-------GSTIT------KVDIFRD-AAVLMVNYIDKIRAQGFEVDYLNIGG 303 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~-------Gs~~~------~~~~~~~-~~~~~~~~~~~l~~~g~~l~~ldiGG 303 (471)
..+.+..+++.++++ ++++. +-+|. |+|.. +.+.+.+ ..+...++++.+++.|..+.++-+|-
T Consensus 58 ~~~~~~~~~~~A~~~--GlkV~-ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGN 134 (332)
T 1hjs_A 58 NLDYNIAIAKRAKAA--GLGVY-IDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGN 134 (332)
T ss_dssp SHHHHHHHHHHHHHT--TCEEE-EEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred CHHHHHHHHHHHHHC--CCEEE-EEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEee
Confidence 457777788888887 56533 33454 33321 2233333 33445667778888888889999985
Q ss_pred CC
Q 012098 304 GL 305 (471)
Q Consensus 304 Gl 305 (471)
-+
T Consensus 135 Ei 136 (332)
T 1hjs_A 135 EI 136 (332)
T ss_dssp SG
T ss_pred cc
Confidence 43
No 129
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=34.40 E-value=2.7e+02 Score=25.72 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=47.4
Q ss_pred HHHHHHHHc-CC--ceEEcCHHHHHHHHHC--CCCCCcEEEeCCCCcH---HHHHHHHhCCCEEEe-CC-----------
Q 012098 131 KILEHLRKL-GC--GAVLVSGNELRLALRA--GFDPTKCIFNGNGKLL---EDLVLAAQEGVFVNV-DS----------- 190 (471)
Q Consensus 131 ~vl~~l~~~-G~--g~~vaS~~El~~a~~~--G~~~~~Ii~~g~~k~~---~~l~~a~~~gv~i~v-Ds----------- 190 (471)
.++..+.+. ++ .+|......++.|+++ |. .|+..-.+... +.+..+.++|+.+++ ..
T Consensus 59 rvv~~i~~~~~~pisIDT~~~~v~~aAl~a~~Ga---~iINdvs~~~d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~ 135 (262)
T 1f6y_A 59 WLVEVTQEVSNLTLCLDSTNIKAIEAGLKKCKNR---AMINSTNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDT 135 (262)
T ss_dssp HHHHHHHTTCCSEEEEECSCHHHHHHHHHHCSSC---EEEEEECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHH
T ss_pred HHHHHHHHhCCCeEEEeCCCHHHHHHHHhhCCCC---CEEEECCCCcccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHH
Confidence 444554443 43 6777788888888887 64 46654443322 445666778875333 21
Q ss_pred -HHHHHHHHHHHHHcCCce-EEEEEEecC
Q 012098 191 -EFDLENIVVASRIAGKKV-NVLLRINPD 217 (471)
Q Consensus 191 -~~el~~l~~~a~~~g~~~-~V~lRin~~ 217 (471)
.+.++.+.+.+.+.|.+. +|. ++|+
T Consensus 136 ~~~~~~~~~~~a~~~Gi~~~~Ii--lDPg 162 (262)
T 1f6y_A 136 RLAFAMELVAAADEFGLPMEDLY--IDPL 162 (262)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEE--EECC
T ss_pred HHHHHHHHHHHHHHCCCCcccEE--EeCC
Confidence 244556666677777542 333 5655
No 130
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=33.88 E-value=3.1e+02 Score=26.00 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred eHHHHHHHHHHHHHHhcCCCceEEEecccCC-cHHHHHHHHHcCCc------------------eEEcCHHHHHHHHHCC
Q 012098 98 SKPQITRNVEAYKQALEGLNSIIGYAIKANN-NYKILEHLRKLGCG------------------AVLVSGNELRLALRAG 158 (471)
Q Consensus 98 d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~-~~~vl~~l~~~G~g------------------~~vaS~~El~~a~~~G 158 (471)
..+.+.-.-+++.+++.+.+++++-.=|+.| ...+-+..+..|-| ..+.|..++....+.-
T Consensus 125 ~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV~~GGg~nHR~gL~D~vLIKdNHi~~~G~i~~Av~~ar~~ 204 (300)
T 3l0g_A 125 HASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSVCIGGGESYRDNLCDGVLIKDNHIASCGSITLAIQRLRKN 204 (300)
T ss_dssp HHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHHHHTTCBCSCSSTTSCEEECHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHHHhcCCcccccCCcceEEEcHhHHHHhCCHHHHHHHHHHh
Q ss_pred CCCCcEEEeCCCCcHHHHHHHHhCCC-EEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCC
Q 012098 159 FDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGI 237 (471)
Q Consensus 159 ~~~~~Ii~~g~~k~~~~l~~a~~~gv-~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi 237 (471)
.+...|..--- +.++++.|++.|. .+.+|+++- +.+.++.+..+.++.+-. +| |+
T Consensus 205 ~p~~kIeVEv~--tl~e~~eAl~aGaDiImLDn~s~-~~l~~av~~~~~~v~lea---------------SG------GI 260 (300)
T 3l0g_A 205 LKNEYIAIECD--NISQVEESLSNNVDMILLDNMSI-SEIKKAVDIVNGKSVLEV---------------SG------CV 260 (300)
T ss_dssp SSSCCEEEEES--SHHHHHHHHHTTCSEEEEESCCH-HHHHHHHHHHTTSSEEEE---------------ES------SC
T ss_pred CCCCCEEEEEC--CHHHHHHHHHcCCCEEEECCCCH-HHHHHHHHhhcCceEEEE---------------EC------CC
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEE
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGA 261 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Gl 261 (471)
+++.+.++.+. ++.++++
T Consensus 261 t~~~i~~~A~t------GVD~Isv 278 (300)
T 3l0g_A 261 NIRNVRNIALT------GVDYISI 278 (300)
T ss_dssp CTTTHHHHHTT------TCSEEEC
T ss_pred CHHHHHHHHHc------CCCEEEe
No 131
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=33.48 E-value=22 Score=28.20 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=39.0
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccCCCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCe
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLI 463 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~ 463 (471)
.+.+++.. ......+|.|.|+ -|+.+-.-..---..++||.|+|..-+-+...-..+ .+|.+|+++.+.
T Consensus 19 ~V~I~Nvn-NG~Rf~TYvI~Ge--GSG~I~lNGAAArl~~~GD~vII~aY~~~~~~e~~~----~~P~vv~vd~~N 87 (102)
T 3plx_B 19 KVQVVNVN-NGARFETYTIATQ--EEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKT----FKPKVVFVDENN 87 (102)
T ss_dssp EEEEEETT-TCCEEEEECEEES--STTCEEEEGGGGGGCCTTCEEEEEEEEEEEHHHHHH----CCCEEEEECTTS
T ss_pred EEEEEECC-CCcEEEEEEEEcC--CCCEEEeCcHHHhccCCCCEEEEEEcccCCHHHHhc----CCCEEEEECCCC
Confidence 34454432 2234567889998 555443221111125899999998544433332223 469999998654
No 132
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=32.48 E-value=39 Score=31.88 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCCCceEEEEEeec-C----C-CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcC-CCCCC
Q 012098 241 KLQWFLDAVKAHPNELKLVGAHCHL-G----S-TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGID-YYHTG 313 (471)
Q Consensus 241 el~~~l~~l~~~~~~l~l~Glh~H~-G----s-~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~-y~~~~ 313 (471)
++.++.+.++++ ++.+.++++.. + . ...+.+..+++++.+.+.++..++.|.+.=.+.+|+ ++.. |....
T Consensus 71 ~~~~~~~~l~~~--Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~-~~~~~~~~~~ 147 (316)
T 3qxb_A 71 RAIAYAKAFRKA--GLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGS-YSAADALNPA 147 (316)
T ss_dssp HHHHHHHHHHHT--TCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBB-CCHHHHTCHH
T ss_pred HHHHHHHHHHHc--CCeEEEeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCC-cCccccCCcc
Confidence 456666667776 79988876421 1 1 123555566667777777777777776532223332 1111 11000
Q ss_pred CCCCCHHHHHHHHHHH---HhcCCcE-EEEcc
Q 012098 314 AVLPKPRNLIDTVREL---VLSRNLN-LIIEP 341 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~---~~~~~~~-l~~Ep 341 (471)
.....++.+++.++++ ..++|++ +.+|+
T Consensus 148 ~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~ 179 (316)
T 3qxb_A 148 RREEIYAIARDMWIELAAYAKRQGLSMLYVEP 179 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 0000123344445444 3467999 99998
No 133
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=31.82 E-value=2.6e+02 Score=25.69 Aligned_cols=84 Identities=14% Similarity=0.070 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCCceEEEEEeecCCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCCCCCCHHH
Q 012098 243 QWFLDAVKAHPNELKLVGAHCHLGST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRN 321 (471)
Q Consensus 243 ~~~l~~l~~~~~~l~l~Glh~H~Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~~~~~~~~ 321 (471)
.++.+.++++ ++.+..++.. +.- ..+... ++..+.+.+.++..++.|. ++|.+|.+ + .+ +.+.
T Consensus 71 ~~~~~~l~~~--gl~i~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~A~~lGa--~~v~~g~~-~-~~--------~~~~ 134 (296)
T 2g0w_A 71 EDMLRILDEH--NMKVTEVEYI-TQWGTAEDRT-AEQQKKEQTTFHMARLFGV--KHINCGLL-E-KI--------PEEQ 134 (296)
T ss_dssp HHHHHHHHHT--TCEEEEEECB-CCCSSTTTCC-HHHHHHHHHHHHHHHHHTC--CEEEECCC-S-CC--------CHHH
T ss_pred HHHHHHHHHc--CCceEeehhh-hccccCChHH-HHHHHHHHHHHHHHHHcCC--CEEEEcCC-C-CC--------CHHH
Confidence 3444555566 7999888763 221 122211 1223444444554455564 56777543 1 11 2455
Q ss_pred HHHHHHHHHhc-CCcEEEEccc
Q 012098 322 LIDTVRELVLS-RNLNLIIEPG 342 (471)
Q Consensus 322 ~~~~i~~~~~~-~~~~l~~EpG 342 (471)
+.+.+++++.. +|+++.+|+-
T Consensus 135 ~~~~l~~l~~~a~Gv~l~lE~~ 156 (296)
T 2g0w_A 135 IIVALGELCDRAEELIIGLEFM 156 (296)
T ss_dssp HHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEEec
Confidence 66666555432 8999999984
No 134
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=31.59 E-value=3.4e+02 Score=25.69 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCCceEEEecccCCcH-HHHHHHHHcCCceE-EcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhC-
Q 012098 106 VEAYKQALEGLNSIIGYAIKANNNY-KILEHLRKLGCGAV-LVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQE- 182 (471)
Q Consensus 106 ~~~~~~a~~~~~~~i~yavKaN~~~-~vl~~l~~~G~g~~-vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~- 182 (471)
.+++.+++++.+++++-.=|+.|.. .+.+.....|-|.- -....+..+.. ..-|.+.|. -.+.++.+.+.
T Consensus 135 t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv~~GGg~nHR~gL~d~vlik-----dNHi~~~G~--i~~Av~~~r~~~ 207 (298)
T 3gnn_A 135 TRQYVDRIADTRARILDTRKTLPGLRLAQKYAVRVGGGANQRLALYAGILIK-----ENHIAAAGG--VGEALDAAFALN 207 (298)
T ss_dssp HHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHHHHTTCCCC------------------------C--HHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCeEEEEecCCCcchHHHHHhhHHhcCccceecCCCcEEEEe-----HHHHHHcCC--HHHHHHHHHHhC
Confidence 4566666666667788888999853 44444444543211 01122222222 122434443 12334444332
Q ss_pred ---CCEEEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHH
Q 012098 183 ---GVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAV 249 (471)
Q Consensus 183 ---gv~i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l 249 (471)
-+.+-||+++|++...+ .| +. .|+++. ++++++.++++.+
T Consensus 208 p~~~ieVEvdtlde~~eAl~----aG--aD-~I~LDn--------------------~~~~~l~~av~~i 250 (298)
T 3gnn_A 208 AEVPVQIEVETLDQLRTALA----HG--AR-SVLLDN--------------------FTLDMMRDAVRVT 250 (298)
T ss_dssp --CCCEEEESSHHHHHHHHH----TT--CE-EEEEES--------------------CCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHH----cC--CC-EEEECC--------------------CCHHHHHHHHHHh
Confidence 24567888888765443 23 23 366651 3567777777765
No 135
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=31.19 E-value=1.8e+02 Score=27.28 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=34.6
Q ss_pred HHHHHHHHcCC--ceEEcCHHHHHHHHHCCCCCCcEEEe--CCCCcHHHHHHHHhCCCEEEe
Q 012098 131 KILEHLRKLGC--GAVLVSGNELRLALRAGFDPTKCIFN--GNGKLLEDLVLAAQEGVFVNV 188 (471)
Q Consensus 131 ~vl~~l~~~G~--g~~vaS~~El~~a~~~G~~~~~Ii~~--g~~k~~~~l~~a~~~gv~i~v 188 (471)
.+++.+.+.++ .+|.....-++.|+++|. .|+-. |-..+++.++.+.++++.+++
T Consensus 72 pvi~~l~~~~v~iSIDT~~~~Va~~al~aGa---~iINDVs~g~~d~~m~~~va~~~~~~vl 130 (270)
T 4hb7_A 72 PVVEAIVGFDVKISVDTFRSEVAEACLKLGV---DMINDQWAGLYDHRMFQIVAKYDAEIIL 130 (270)
T ss_dssp HHHHHHTTSSSEEEEECSCHHHHHHHHHHTC---CEEEETTTTSSCTHHHHHHHHTTCEEEE
T ss_pred HHHHHhhcCCCeEEEECCCHHHHHHHHHhcc---ceeccccccccchhHHHHHHHcCCCeEE
Confidence 45555555554 566667777888888886 35532 323456777777888875443
No 136
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=31.10 E-value=1e+02 Score=28.87 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeec-CCCCCCHH----------HHHHHHHHHHHHHHHHHHcCCCCCEEEecCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHL-GSTITKVD----------IFRDAAVLMVNYIDKIRAQGFEVDYLNIGGG 304 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~-Gs~~~~~~----------~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGG 304 (471)
+.+++++. +.++++ ++.+.++|+-. +....++. ...+..+.+.+.++..++.|. ++|.++++
T Consensus 58 ~~~~~~~~---~~l~~~--GL~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~~ 130 (303)
T 3l23_A 58 GVPMMDFK---KMAEDA--GLKIISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGC--KYLIQPMM 130 (303)
T ss_dssp TEEHHHHH---HHHHHT--TCEEEEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTC--SEEEECSC
T ss_pred CCCHHHHH---HHHHHc--CCeEEEEecccccccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCC--CEEEECCC
Confidence 44455554 445555 79998887643 11111111 123334444555555555564 56766543
Q ss_pred CCcCCCCCCCCCCCHHHHHHHHHHH---HhcCCcE--EEEccc
Q 012098 305 LGIDYYHTGAVLPKPRNLIDTVREL---VLSRNLN--LIIEPG 342 (471)
Q Consensus 305 l~i~y~~~~~~~~~~~~~~~~i~~~---~~~~~~~--l~~EpG 342 (471)
+.. .. ...++.+++.++++ ..++|++ +.+|+=
T Consensus 131 -~~~--~~---~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~ 167 (303)
T 3l23_A 131 -PTI--TT---HDEAKLVCDIFNQASDVIKAEGIATGFGYHNH 167 (303)
T ss_dssp -CCC--CS---HHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred -CCC--CC---HHHHHHHHHHHHHHHHHHHHCCCcceEEEccC
Confidence 111 00 01234445555444 4568999 999874
No 137
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=30.69 E-value=1.6e+02 Score=26.65 Aligned_cols=90 Identities=12% Similarity=0.202 Sum_probs=51.6
Q ss_pred CCCHhHHHHHHHHHHcCCCCceEEEEEeecCCC--C-CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 236 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGST--I-TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~--~-~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
-++.+++.++.+.++++ ++....+ |.... . .+.+..+..++.+.+.++..++.|. +++.+-.|.. .
T Consensus 45 ~~~~~~~~~~~~~~~~~--gl~~~~~--h~~~~~~l~s~~~~r~~~~~~~~~~i~~a~~lGa--~~vv~h~g~~----~- 113 (270)
T 3aam_A 45 ALSPAEVEAFRALREAS--GGLPAVI--HASYLVNLGAEGELWEKSVASLADDLEKAALLGV--EYVVVHPGSG----R- 113 (270)
T ss_dssp CCCHHHHHHHHHHHHHT--TCCCEEE--ECCTTCCTTCSSTHHHHHHHHHHHHHHHHHHHTC--CEEEECCCBS----C-
T ss_pred CCCHHHHHHHHHHHHHc--CCceEEE--ecCcccCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEECCCCC----C-
Confidence 35567777777777777 5622233 33211 1 1445556667777777776666675 4555544432 1
Q ss_pred CCCCCCHHHHHHHHHHHH---h-cCCcEEEEccc
Q 012098 313 GAVLPKPRNLIDTVRELV---L-SRNLNLIIEPG 342 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~---~-~~~~~l~~EpG 342 (471)
.+.+.+.+++.+ . ++|+++.+|+-
T Consensus 114 ------~~~~~~~l~~l~~~a~~~~gv~l~lEn~ 141 (270)
T 3aam_A 114 ------PERVKEGALKALRLAGVRSRPVLLVENT 141 (270)
T ss_dssp ------HHHHHHHHHHHHHHHTCCSSSEEEEECC
T ss_pred ------HHHHHHHHHHHHHhhcccCCCEEEEecC
Confidence 044555555443 3 57899999984
No 138
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=30.69 E-value=38 Score=32.07 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeec-C-----C-CC------------C--CH-HHHHHHHHHHHHHHHHHHHcCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHL-G-----S-TI------------T--KV-DIFRDAAVLMVNYIDKIRAQGFEVD 297 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~-G-----s-~~------------~--~~-~~~~~~~~~~~~~~~~l~~~g~~l~ 297 (471)
+++.++.+.++++ ++.+.++.+|. | . .. . +. +..++.++.+.+.++..++.|. +
T Consensus 51 ~~~~~~~~~l~~~--gl~i~~~~~~~~g~~~~~p~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa--~ 126 (340)
T 2zds_A 51 SYVDSRHQLLDKY--GLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGV--D 126 (340)
T ss_dssp THHHHHHHHHHHT--TCEEEEEEEHHHHHHHHCSCCSHHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTC--S
T ss_pred HHHHHHHHHHHHc--CCeEEEeeccccccccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 4566777777777 79999988886 1 1 10 0 22 2344455666666666666675 4
Q ss_pred EEEecCCCCc-C--CCCCCCC----CCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 298 YLNIGGGLGI-D--YYHTGAV----LPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 298 ~ldiGGGl~i-~--y~~~~~~----~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
+|.+-.|... + |.-.... ...++.+++.++++ ..++|+++.+|+-
T Consensus 127 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~ 181 (340)
T 2zds_A 127 TVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVH 181 (340)
T ss_dssp EEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred EEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 5555433211 1 1000000 00122344444443 3457999999984
No 139
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=30.39 E-value=91 Score=28.65 Aligned_cols=94 Identities=9% Similarity=-0.010 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEec--CCC--Cc---CCCC-CC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIG--GGL--GI---DYYH-TG 313 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiG--GGl--~i---~y~~-~~ 313 (471)
+.++.+.++++ ++.+..+++. .. .+++...+.++.+.+.++..++.|.+ +|.+. +.. |. ++.. ..
T Consensus 57 ~~~~~~~l~~~--gl~~~~~~~~--~~-~~~~~~~~~~~~~~~~i~~a~~lG~~--~v~~~~~~~~~~G~~~~~~~~~~~ 129 (301)
T 3cny_A 57 PEKLNYELKLR--NLEIAGQWFS--SY-IIRDGIEKASEAFEKHCQYLKAINAP--VAVVSEQTYTIQRSDTANIFKDKP 129 (301)
T ss_dssp HHHHHHHHHHT--TCEECEEEEE--EC-HHHHHHHHHHHHHHHHHHHHHHTTCC--EEEEEECTTCCTTCSSCCTTTCCC
T ss_pred HHHHHHHHHHC--CCeEEEEecc--CC-CChhhHHHHHHHHHHHHHHHHHcCCC--EEEecCCCccccCcccCCcccccc
Confidence 34444555566 7888877432 11 12444455566667777777777764 44443 211 11 0000 00
Q ss_pred C-CCCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 314 A-VLPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 314 ~-~~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
. ....++.+++.++++ ..++|+++.+|+-
T Consensus 130 ~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 162 (301)
T 3cny_A 130 YFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHHH 162 (301)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 0 000133444444444 3468999999984
No 140
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=30.27 E-value=2.7e+02 Score=25.42 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCcEE-EeCCCCcHHHHHHHHhCCCEEEe----CCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCC
Q 012098 161 PTKCI-FNGNGKLLEDLVLAAQEGVFVNV----DSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKF 235 (471)
Q Consensus 161 ~~~Ii-~~g~~k~~~~l~~a~~~gv~i~v----Ds~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKf 235 (471)
++-++ |+.|.-..+.++.++++|+.+++ -+.++++.|.+++++. +...+++ . .-|
T Consensus 46 ~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~-~~~~vv~--a-----------------~N~ 105 (245)
T 1p9l_A 46 TEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAK-PNTSVLI--A-----------------PNF 105 (245)
T ss_dssp CCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTS-TTCEEEE--C-----------------SCC
T ss_pred CcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhC-CCCCEEE--E-----------------CCc
Confidence 35555 88887777788889999998777 5667788888877643 1233322 1 224
Q ss_pred CCCHhHHHHHHHHHHc-CCCCceEEEEE
Q 012098 236 GIRNEKLQWFLDAVKA-HPNELKLVGAH 262 (471)
Q Consensus 236 Gi~~~el~~~l~~l~~-~~~~l~l~Glh 262 (471)
++-..-+.++++.+.. .+ .++++=.|
T Consensus 106 siGv~ll~~l~~~aa~~~~-dieIiE~H 132 (245)
T 1p9l_A 106 AIGAVLSMHFAKQAARFFD-SAEVIELH 132 (245)
T ss_dssp CHHHHHHHHHHHHHGGGCS-EEEEEEEE
T ss_pred cHHHHHHHHHHHHHHhhcC-CEEEEECc
Confidence 4545556666666543 33 45554444
No 141
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=30.24 E-value=1.2e+02 Score=28.13 Aligned_cols=85 Identities=21% Similarity=0.266 Sum_probs=52.5
Q ss_pred HHHHHhCCC---EE----EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 176 LVLAAQEGV---FV----NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 176 l~~a~~~gv---~i----~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+..+.+.|+ .+ -..+++|+..+.++|.+.|- +| .| || ||+.+.+.++++.
T Consensus 174 iaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~----~l--EP-----------TG------GIdl~Nf~~I~~i 230 (275)
T 3m6y_A 174 IALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGF----AL--EP-----------TG------GIDKENFETIVRI 230 (275)
T ss_dssp HHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTC----EE--EE-----------BS------SCCTTTHHHHHHH
T ss_pred HHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc----eE--CC-----------CC------CccHhHHHHHHHH
Confidence 444455665 22 25899999999998887663 33 33 45 8999999999998
Q ss_pred HHcCCCCceEEEEEeecC-----CCCCCHHHHHHHHHHHHHH
Q 012098 249 VKAHPNELKLVGAHCHLG-----STITKVDIFRDAAVLMVNY 285 (471)
Q Consensus 249 l~~~~~~l~l~Glh~H~G-----s~~~~~~~~~~~~~~~~~~ 285 (471)
+.+. ++..+-=|.+-. +..+.++..++.+..+.++
T Consensus 231 ~l~a--Gv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 231 ALEA--NVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp HHHT--TCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCeecccccceeccCCCCCCCHHHHHHHHHHHHHH
Confidence 8876 566655555421 1123455555554444333
No 142
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=29.89 E-value=2.2e+02 Score=26.30 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHcCCCCceEEEEEeecC--CCC--CCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecC--CCCcCCCCCC
Q 012098 240 EKLQWFLDAVKAHPNELKLVGAHCHLG--STI--TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGG--GLGIDYYHTG 313 (471)
Q Consensus 240 ~el~~~l~~l~~~~~~l~l~Glh~H~G--s~~--~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGG--Gl~i~y~~~~ 313 (471)
+++.++.+.++++ ++.+.+ |.-.. -.. .+.+..++.++.+.+.++..++.|.+ +|.+-. +.|. +....
T Consensus 66 ~~~~~l~~~l~~~--gl~i~~-~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~~~~~g~-~~~~~ 139 (309)
T 2hk0_A 66 AELATIRKSAKDN--GIILTA-GIGPSKTKNLSSEDAAVRAAGKAFFERTLSNVAKLDIH--TIGGALHSYWPI-DYSQP 139 (309)
T ss_dssp HHHHHHHHHHHHT--TCEEEE-ECCCCSSSCSSCSCHHHHHHHHHHHHHHHHHHHHTTCC--EEEECTTSCSSC-CTTSC
T ss_pred hhHHHHHHHHHHc--CCeEEE-ecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEeeccccccc-cCCCc
Confidence 5566666777777 788877 43111 111 24455556666677777777777754 444211 1111 10000
Q ss_pred -CCCCCHHHHHHHHHHH---HhcCCcEEEEccc
Q 012098 314 -AVLPKPRNLIDTVREL---VLSRNLNLIIEPG 342 (471)
Q Consensus 314 -~~~~~~~~~~~~i~~~---~~~~~~~l~~EpG 342 (471)
......+.+.+.++++ ..++|+++.+|+-
T Consensus 140 ~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~ 172 (309)
T 2hk0_A 140 VDKAGDYARGVEGINGIADFANDLGINLCIEVL 172 (309)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeec
Confidence 0000123344444443 4468999999984
No 143
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=29.70 E-value=2.7e+02 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEEEecCC
Q 012098 190 SEFDLENIVVASRIAGKKVNVLLRINPDV 218 (471)
Q Consensus 190 s~~el~~l~~~a~~~g~~~~V~lRin~~~ 218 (471)
+.+|++.+.++.. .| ++|.+|.-|+.
T Consensus 128 ~~ed~~~lk~L~~-~G--v~v~~q~vP~d 153 (168)
T 3eye_A 128 DDQDLTDLRFIKQ-RG--VNVFIQDVPGD 153 (168)
T ss_dssp CHHHHHHHHHHHH-TT--CEEEECSSTTS
T ss_pred CHHHHHHHHHHHH-CC--CEEEEEECcCC
Confidence 3677888877654 24 57888887763
No 144
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=29.57 E-value=2e+02 Score=26.82 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=64.0
Q ss_pred cCHHHHHHh-cCCCcEE---EEe-----HHHHHHHHHHHHHHhcCCCceEEEecccCCcHHHHHHHHHcCCce-EE----
Q 012098 80 VRVQDVMET-VEKRPFY---LYS-----KPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGA-VL---- 145 (471)
Q Consensus 80 i~l~~l~~~-~~~tP~~---v~d-----~~~l~~n~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~~~G~g~-~v---- 145 (471)
+.+..|+++ ..++.++ |+. ++.+.+.+++.+...+. ++++++. ++.++.+.+.+.+.|+.+ ..
T Consensus 90 v~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy--~~dd~~~akrl~~~G~~aVmPlg~p 166 (265)
T 1wv2_A 90 VRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKD-GFDVMVY--TSDDPIIARQLAEIGCIAVMPLAGL 166 (265)
T ss_dssp HHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTT-TCEEEEE--ECSCHHHHHHHHHSCCSEEEECSSS
T ss_pred HHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHC-CCEEEEE--eCCCHHHHHHHHHhCCCEEEeCCcc
Confidence 677788888 5577764 331 23344555555544333 6665522 677799999999988632 22
Q ss_pred -------cCHHHHHHHHHC-CCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEeCC
Q 012098 146 -------VSGNELRLALRA-GFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDS 190 (471)
Q Consensus 146 -------aS~~El~~a~~~-G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~vDs 190 (471)
.+..=++.+.+. ++ .++..|...++++...+++.|+. +.|.|
T Consensus 167 IGsG~Gi~~~~lI~~I~e~~~v---PVI~eGGI~TPsDAa~AmeLGAdgVlVgS 217 (265)
T 1wv2_A 167 IGSGLGICNPYNLRIILEEAKV---PVLVDAGVGTASDAAIAMELGCEAVLMNT 217 (265)
T ss_dssp TTCCCCCSCHHHHHHHHHHCSS---CBEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred CCCCCCcCCHHHHHHHHhcCCC---CEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 343334444443 33 36667777788899999988864 55544
No 145
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=29.51 E-value=2.7e+02 Score=26.69 Aligned_cols=103 Identities=8% Similarity=0.031 Sum_probs=54.9
Q ss_pred CCCCCcEEEeCCCCcHHHHHHHHhCCC---EEEe-C---------------CHHHHHHHHHHHHHcCCceEEEEEEecCC
Q 012098 158 GFDPTKCIFNGNGKLLEDLVLAAQEGV---FVNV-D---------------SEFDLENIVVASRIAGKKVNVLLRINPDV 218 (471)
Q Consensus 158 G~~~~~Ii~~g~~k~~~~l~~a~~~gv---~i~v-D---------------s~~el~~l~~~a~~~g~~~~V~lRin~~~ 218 (471)
+.+..++.-..+.. +.++.|++.|+ .+.+ - +++.+..+.+.+++.|..+ ++++..
T Consensus 86 ~~~~~~i~~l~~~~--~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v----~~~~~~ 159 (337)
T 3ble_A 86 LTERIEILGFVDGN--KTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKI----NVYLED 159 (337)
T ss_dssp CGGGEEEEEESSTT--HHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEE----EEEEET
T ss_pred cCCCCeEEEEccch--hhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE----EEEEEE
Confidence 34333443334432 38888888875 2222 1 2245556666777777653 333220
Q ss_pred CCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCCHHHHHHHHHHH
Q 012098 219 DPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLM 282 (471)
Q Consensus 219 ~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~~~~~~~~~~~~ 282 (471)
+... .-.+++.+.++++.+.+. +...+.|.=..|. ..+..+.+.++.+
T Consensus 160 ------~~~~------~~~~~~~~~~~~~~~~~~--Ga~~i~l~DT~G~--~~P~~v~~lv~~l 207 (337)
T 3ble_A 160 ------WSNG------FRNSPDYVKSLVEHLSKE--HIERIFLPDTLGV--LSPEETFQGVDSL 207 (337)
T ss_dssp ------HHHH------HHHCHHHHHHHHHHHHTS--CCSEEEEECTTCC--CCHHHHHHHHHHH
T ss_pred ------CCCC------CcCCHHHHHHHHHHHHHc--CCCEEEEecCCCC--cCHHHHHHHHHHH
Confidence 0000 013567788888888877 5666666555653 4566555544433
No 146
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=28.89 E-value=1.3e+02 Score=27.80 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=51.6
Q ss_pred CHhHHHHHHHHHHcCCCCceEEEEEeecCCC----CCC-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCC
Q 012098 238 RNEKLQWFLDAVKAHPNELKLVGAHCHLGST----ITK-VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHT 312 (471)
Q Consensus 238 ~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~----~~~-~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~ 312 (471)
+.+++.++.+.++++ ++..+.+ |.... ..+ .+..++.++.+.+.++..++.|. +++.+-.|....
T Consensus 51 ~~~~~~~~~~~l~~~--gl~~~~~--h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa--~~vv~h~g~~~~---- 120 (303)
T 3aal_A 51 EELNIEAGRQHMQAH--GIEEIVV--HAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGA--KQLVLHPGAHVG---- 120 (303)
T ss_dssp GGGCHHHHHHHHHHT--TCCEEEE--ECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTC--SEEEECCEECTT----
T ss_pred CHHHHHHHHHHHHHc--CCceEEE--eccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCC--CEEEECCCcCCC----
Confidence 345666666777776 5644334 43211 124 55566667777777776666675 455554333111
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCcEEEEccc
Q 012098 313 GAVLPKPRNLIDTVRELVLS-RNLNLIIEPG 342 (471)
Q Consensus 313 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~EpG 342 (471)
......++.+++.+++++.. +|++|.+|+-
T Consensus 121 ~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~ 151 (303)
T 3aal_A 121 AGVEAGLRQIIRGLNEVLTREQNVQIALETM 151 (303)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSCSCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 00001234456666665432 6899999984
No 147
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=28.38 E-value=4.4e+02 Score=25.95 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=41.3
Q ss_pred CCHhHHHHHHHHHHcCCCCceEEEEEeec-------CCCCC-------CHHHHHHHH-HHHHHHHHHHHHcCCCCCEEEe
Q 012098 237 IRNEKLQWFLDAVKAHPNELKLVGAHCHL-------GSTIT-------KVDIFRDAA-VLMVNYIDKIRAQGFEVDYLNI 301 (471)
Q Consensus 237 i~~~el~~~l~~l~~~~~~l~l~Glh~H~-------Gs~~~-------~~~~~~~~~-~~~~~~~~~l~~~g~~l~~ldi 301 (471)
.+.+.+..++++++++ ++++. |-||. |+|.. +.+.+.+.+ +....++..+++.|..+.++-+
T Consensus 86 ~d~~~~~~~a~~Ak~~--GLkVl-ldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqv 162 (399)
T 1ur4_A 86 NDLEKAIQIGKRATAN--GMKLL-ADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 162 (399)
T ss_dssp CCHHHHHHHHHHHHHT--TCEEE-EEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHC--CCEEE-EEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 3577888888888888 56643 45674 23321 223333333 3455667778888888889989
Q ss_pred cCC
Q 012098 302 GGG 304 (471)
Q Consensus 302 GGG 304 (471)
|-=
T Consensus 163 GNE 165 (399)
T 1ur4_A 163 GNE 165 (399)
T ss_dssp SSS
T ss_pred ccc
Confidence 853
No 148
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=28.33 E-value=2.3e+02 Score=22.73 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCceEEc--CHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHH-H-hCCC-EEEeCCHHHHHHHHHHHHHc
Q 012098 130 YKILEHLRKLGCGAVLV--SGNELRLALRAGFDPTKCIFNGNGKLLEDLVLA-A-QEGV-FVNVDSEFDLENIVVASRIA 204 (471)
Q Consensus 130 ~~vl~~l~~~G~g~~va--S~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a-~-~~gv-~i~vDs~~el~~l~~~a~~~ 204 (471)
..+++.|.+.|..+.+. +...++.+.+.|+ .+ +.|...+.+.++.+ + +..+ .+.+++-++-..+...+++.
T Consensus 20 ~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~---~~-i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~ 95 (140)
T 3fwz_A 20 SLLGEKLLASDIPLVVIETSRTRVDELRERGV---RA-VLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAK 95 (140)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHHHTTC---EE-EESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHcCC---CE-EECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHH
Confidence 46778888888755444 4555666666665 33 34665666666654 2 2333 34667776666666777777
Q ss_pred CCceEEEEEEe
Q 012098 205 GKKVNVLLRIN 215 (471)
Q Consensus 205 g~~~~V~lRin 215 (471)
++..++..|++
T Consensus 96 ~~~~~iiar~~ 106 (140)
T 3fwz_A 96 NPDIEIIARAH 106 (140)
T ss_dssp CSSSEEEEEES
T ss_pred CCCCeEEEEEC
Confidence 77788999986
No 149
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=28.21 E-value=2.3e+02 Score=27.06 Aligned_cols=86 Identities=5% Similarity=-0.099 Sum_probs=55.5
Q ss_pred HHHHHHHHHc-CCce---EE----cCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEE-eC--CHHHHHHH
Q 012098 130 YKILEHLRKL-GCGA---VL----VSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVN-VD--SEFDLENI 197 (471)
Q Consensus 130 ~~vl~~l~~~-G~g~---~v----aS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~-vD--s~~el~~l 197 (471)
..+++.+.+. ++-+ |. ....-++.|+++|.+...|+..-.+ ..++.+..+.++|+.++ .. +++.++.+
T Consensus 111 ~~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~~~~~~~~aa~~g~~vv~m~~~dv~~l~~~ 190 (310)
T 2h9a_B 111 AEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYKPIVATCMVHGHSVVASAPLDINLSKQL 190 (310)
T ss_dssp HHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTTHHHHHHHHHHHTCEEEEECSSCHHHHHHH
T ss_pred HHHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCccHHHHHHHHHhCCCEEEEChhHHHHHHHH
Confidence 4577777765 6544 44 5688888999998754456654332 34556667778887533 22 47888888
Q ss_pred HHHHHHcCCce-EEEEEEecC
Q 012098 198 VVASRIAGKKV-NVLLRINPD 217 (471)
Q Consensus 198 ~~~a~~~g~~~-~V~lRin~~ 217 (471)
.+.+.+.|.+. +|. ++|+
T Consensus 191 ~~~a~~~Gi~~e~Ii--lDPg 209 (310)
T 2h9a_B 191 NIMIMEMNLAPNRII--MDPL 209 (310)
T ss_dssp HHHHHTTTCCGGGEE--EECC
T ss_pred HHHHHHCCCChhhEE--EeCC
Confidence 88888888642 444 4554
No 150
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=27.72 E-value=1.9e+02 Score=27.61 Aligned_cols=106 Identities=24% Similarity=0.362 Sum_probs=60.2
Q ss_pred HHHHHHCC-CCCCcEEEeCCC---CcHHHHHHHHhCCCE-EEeCCHHHH--HHHHHHH-HHcCCceEEEEEEecCCCCCC
Q 012098 151 LRLALRAG-FDPTKCIFNGNG---KLLEDLVLAAQEGVF-VNVDSEFDL--ENIVVAS-RIAGKKVNVLLRINPDVDPQV 222 (471)
Q Consensus 151 l~~a~~~G-~~~~~Ii~~g~~---k~~~~l~~a~~~gv~-i~vDs~~el--~~l~~~a-~~~g~~~~V~lRin~~~~~~~ 222 (471)
+..+++.| ++++++++.|.- .++++++.+.+.|+. +..+.+.+. +.+.+.+ +..+. -.|.|=++.+.-...
T Consensus 169 ~~~~~~~~~~~~~~~~~iGiR~~~~~~~e~~~~~~~g~~~~~~~ei~~~g~~~v~~~~~~~~~~-~~vylSiDiDvLDpa 247 (326)
T 3niq_A 169 FRRAIEEGLLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGVEATLAEARRVVGA-GPTYVSFDVDVLDPA 247 (326)
T ss_dssp HHHHHHTTCEEEEEEEEEEECSCCSCTTSTHHHHHHTCEEEEHHHHHHHHHHHHHHHHHHHHTT-SCEEEEEEGGGBCTT
T ss_pred HHHHHhccCCCCceEEEEeecCCCCCHHHHHHHHHCCCEEEEHHHhhhcCHHHHHHHHHHHhCC-CeEEEEEeccccCHh
Confidence 44455554 345678777753 245677788888886 555544432 2222222 22232 256666664432111
Q ss_pred -CcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 223 -HPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 223 -~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
-+ .|| .....|++..|+.++++.+. +.+++|+..-
T Consensus 248 ~aP--gtg-tp~pgGlt~~e~~~~l~~l~----~~~vvg~Div 283 (326)
T 3niq_A 248 FAP--GTG-TPEIGGMTSLQAQQLVRGLR----GLDLVGADVV 283 (326)
T ss_dssp TCC--CCS-SCCSSCBCHHHHHHHHHTTT----TSCEEEEEEE
T ss_pred hCC--CCC-CCCCCCCCHHHHHHHHHHHc----CCCEEEEEEE
Confidence 11 122 36778999999988888763 3568888764
No 151
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=27.03 E-value=50 Score=32.77 Aligned_cols=43 Identities=21% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCE---EEeCC--------HHHHHHHHHHHHHcCCceEEEEEEecCC
Q 012098 174 EDLVLAAQEGVF---VNVDS--------EFDLENIVVASRIAGKKVNVLLRINPDV 218 (471)
Q Consensus 174 ~~l~~a~~~gv~---i~vDs--------~~el~~l~~~a~~~g~~~~V~lRin~~~ 218 (471)
+.|+.|.++|.. .++-+ .++++.|.+.|++.| ..|.+-|+|..
T Consensus 45 ~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g--~~vi~DVsp~~ 98 (385)
T 1x7f_A 45 AYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNN--MEVILDVAPAV 98 (385)
T ss_dssp HHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTT--CEEEEEECTTC
T ss_pred HHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCC--CEEEEECCHHH
Confidence 457777777752 23322 345666777777655 57788888754
No 152
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=26.93 E-value=88 Score=28.81 Aligned_cols=94 Identities=15% Similarity=0.050 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCCceEEEEEee-------cCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCCCCC
Q 012098 242 LQWFLDAVKAHPNELKLVGAHCH-------LGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGA 314 (471)
Q Consensus 242 l~~~l~~l~~~~~~l~l~Glh~H-------~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~~~~ 314 (471)
+.++.+.++++ ++.+.++|.. ..-...+.+..++.++.+.+.++..++.|. +++. +-..|. +. ...
T Consensus 70 ~~~~~~~l~~~--gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~--~~v~-~~~~g~-~~-~~~ 142 (290)
T 2zvr_A 70 WNEVKILSEEL--NLPICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGA--LVII-GLVRGR-RE-GRS 142 (290)
T ss_dssp HHHHHHHHHHH--TCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTC--EEEE-SGGGCC-CT-TSC
T ss_pred HHHHHHHHHHc--CCeEEEEeccCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEE-ecCCCC-CC-CcC
Confidence 34444555555 7999888872 111123444455566666666666666675 3444 210111 11 000
Q ss_pred CCCCHHHHHHHHHHHHhcCC-cEEEEccc
Q 012098 315 VLPKPRNLIDTVRELVLSRN-LNLIIEPG 342 (471)
Q Consensus 315 ~~~~~~~~~~~i~~~~~~~~-~~l~~EpG 342 (471)
....++.+.+.+++++.... +++.+|+-
T Consensus 143 ~~~~~~~~~~~l~~l~~~a~~v~l~lEn~ 171 (290)
T 2zvr_A 143 YEETEELFIESMKRLLELTEHAKFVIEPL 171 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCEEEEEeC
Confidence 00113445555665543211 89999984
No 153
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=26.87 E-value=2.6e+02 Score=28.18 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=57.3
Q ss_pred EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceE--EEEEe
Q 012098 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL--VGAHC 263 (471)
Q Consensus 186 i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l--~Glh~ 263 (471)
++..+++-++.+.+.|++.+. .|.|.+..+.-.. .| .--|++++++..++..+.+.- ++.+ +-||-
T Consensus 26 v~~~n~e~i~Ail~aAee~~s--PVIIe~t~~qv~~------~g---GYtG~~p~~f~~~V~~~A~~~-~vPv~pV~Lhl 93 (450)
T 3txv_A 26 ICSAHPLVIEAAMLRAHREKA--PVLIEATCNQVNQ------DG---GYTGMTPEDFTRFVGAIADRI-EFPREKILLGG 93 (450)
T ss_dssp ECCCCHHHHHHHHHHHHHSCS--CEEEEEETTTSCT------TC---TTTTCCHHHHHHHHHHHHHHT-TCCGGGEEEEE
T ss_pred eCcCCHHHHHHHHHHHHHhCC--CEEEEcChhhHhh------cC---CCCCCCHHHHHHHHHHHHHHc-CcCcccEEEEC
Confidence 667799999999999998764 5778877542100 01 113777888877766543322 4442 44555
Q ss_pred -ecCC---CCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEE
Q 012098 264 -HLGS---TITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300 (471)
Q Consensus 264 -H~Gs---~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ld 300 (471)
|.|+ |..+. .++++...+.+.+.-+.|++-=+||
T Consensus 94 DHg~~~~w~~~~~---~~am~~a~e~i~~aI~AGFtSVMiD 131 (450)
T 3txv_A 94 DHLGPNPWKHLPA---DEAMAKAEAMITAYAKAGFTKLHLD 131 (450)
T ss_dssp EEESSGGGTTSCH---HHHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCCCCcccccccH---HHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 6655 22222 3444444555544445677544444
No 154
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=26.42 E-value=2.4e+02 Score=27.15 Aligned_cols=47 Identities=13% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecC
Q 012098 202 RIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLG 266 (471)
Q Consensus 202 ~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~G 266 (471)
+..|....|++|+++.. ...-|.+.++..++++.+.+. +..||...|
T Consensus 205 ~avg~d~pv~vRls~~~-------------~~~~g~~~~~~~~~a~~l~~~-----vd~i~vs~g 251 (343)
T 3kru_A 205 KNWPENKPIFVRVSADD-------------YMEGGINIDMMVEYINMIKDK-----VDLIDVSSG 251 (343)
T ss_dssp HTSCTTSCEEEEEECCC-------------SSTTSCCHHHHHHHHHHHTTT-----CSEEEEECC
T ss_pred hcCCccCCeEEEeechh-------------hhccCccHHHHHHHHHHhhcc-----ccEEeccCC
Confidence 33566778999999742 122378888888888887652 444666444
No 155
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=26.21 E-value=2.9e+02 Score=27.64 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCCceEEEE----Eeec----CCC-CCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCC-CcCCCCCC
Q 012098 244 WFLDAVKAHPNELKLVGA----HCHL----GST-ITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGL-GIDYYHTG 313 (471)
Q Consensus 244 ~~l~~l~~~~~~l~l~Gl----h~H~----Gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl-~i~y~~~~ 313 (471)
.+.+.+++. ++.+... ..|. |.. ..+.+..+++++.+.+.++...+.|. +.+.+-+|. |.++....
T Consensus 124 ~lk~~l~~~--GL~~~~~t~nl~~h~~y~~G~~~spd~evR~~ai~~lk~aId~A~~LGa--~~vv~~~G~~G~~~~~~~ 199 (438)
T 1a0c_A 124 MIKDYLKTS--KTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGG--ENYVFWGGREGYETLLNT 199 (438)
T ss_dssp HHHHHHTTC--SCEEEEEECCCSSSGGGTTCSTTCSCHHHHHHHHHHHHHHHHHHHHTTC--SEEEECCTTSEESCGGGC
T ss_pred HHHHHHHHh--CCceEeccccccCCCccccCCCCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEccCCCccccCCCC
Confidence 344445554 6776542 2232 221 24566667777777777777777775 467776664 33222111
Q ss_pred CCCCCHHHHHHHHHHHHh---cCC--cEEEEcc
Q 012098 314 AVLPKPRNLIDTVRELVL---SRN--LNLIIEP 341 (471)
Q Consensus 314 ~~~~~~~~~~~~i~~~~~---~~~--~~l~~Ep 341 (471)
..-...+.+++.++..+. +.| ++|.+||
T Consensus 200 ~~~~~~~~~~e~L~~~~~~A~~~Gv~v~l~IEp 232 (438)
T 1a0c_A 200 DMEFELDNFARFLHMAVDYAKEIGFEGQFLIEP 232 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEee
Confidence 000012345555555443 465 4999997
No 156
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=25.09 E-value=1.3e+02 Score=30.11 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=60.2
Q ss_pred EEeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCce--EEEEEe
Q 012098 186 VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK--LVGAHC 263 (471)
Q Consensus 186 i~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~--l~Glh~ 263 (471)
+++-+++.++.+.++|++.+ ..|.|.+.++.-.+ . | .-.|.+++.+..++..+.+.- ++. .+-||.
T Consensus 19 fn~~n~e~i~Ail~aAee~~--sPVIi~~s~~~v~~-----~-g---GY~g~~~~~~~~~v~~~A~~~-~vP~~~VaLHl 86 (420)
T 2fiq_A 19 VCSAHPLVIEAALAFDRNST--RKVLIEATSNQVNQ-----F-G---GYTGMTPADFREFVFAIADKV-GFARERIILGG 86 (420)
T ss_dssp ECCCCHHHHHHHHHHTTTSC--CCEEEEEETTTBST-----T-C---TTTTBCHHHHHHHHHHHHHHH-TCCGGGEEEEE
T ss_pred eccCCHHHHHHHHHHHHHcC--CCEEEEcChhhhhh-----c-c---CCCCCCHHHHHHHHHHHHHHc-CcCcceEEEEC
Confidence 78899999999999988765 46788887642100 0 1 123777788777666554321 344 255666
Q ss_pred -ecCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEE
Q 012098 264 -HLGSTITKVDIFRDAAVLMVNYIDKIRAQGFEVDYLN 300 (471)
Q Consensus 264 -H~Gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~l~~ld 300 (471)
|.++....-....+++..+.+.+.+.-+.|++-=+||
T Consensus 87 DHg~~~~w~~~~~~~am~~a~e~i~~aI~aGFtSVMiD 124 (420)
T 2fiq_A 87 DHLGPNCWQQENVDAAMEKSVELVKAYVRAGFSKIHLD 124 (420)
T ss_dssp EEESSGGGTTSBHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCCccccccchhhhhhhHHHHHHHHHHhCCCEEEEC
Confidence 5555311111123455555566655556687654555
No 157
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=25.00 E-value=1.4e+02 Score=29.24 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCC---EE---EeCCHHHHHHHHHHHHHcCCceEEEE
Q 012098 173 LEDLVLAAQEGV---FV---NVDSEFDLENIVVASRIAGKKVNVLL 212 (471)
Q Consensus 173 ~~~l~~a~~~gv---~i---~vDs~~el~~l~~~a~~~g~~~~V~l 212 (471)
...+..|++.|+ ++ |+.+.+.++.+.+.|++.+.+++|++
T Consensus 95 ~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~~piRIGv 140 (366)
T 3noy_A 95 PSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGV 140 (366)
T ss_dssp HHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcCCCEEEec
Confidence 344445555554 23 35566778888899999888766654
No 158
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=24.74 E-value=2.6e+02 Score=26.77 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=35.6
Q ss_pred EEEecccCCcHHHHHHHHHcCCceEEcCH---HH---H-HHHHHCCCCCCcEEEeC
Q 012098 120 IGYAIKANNNYKILEHLRKLGCGAVLVSG---NE---L-RLALRAGFDPTKCIFNG 168 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~~G~g~~vaS~---~E---l-~~a~~~G~~~~~Ii~~g 168 (471)
+..++.....+.+++.+.+.|+.+-+-+. +. + ..+.++|+++++|++..
T Consensus 160 lINsv~~~~~~~m~~laa~~g~~vVlmh~~d~~~~~~l~~~a~~~GI~~e~IIlDP 215 (323)
T 4djd_D 160 LLGNAEQENYKSLTAACMVHKHNIIARSPLDINICKQLNILINEMNLPLDHIVIDP 215 (323)
T ss_dssp EEEEEBTTBCHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHTTTCCGGGEEEEC
T ss_pred eEEECCcccHHHHHHHHHHhCCeEEEEccchHHHHHHHHHHHHHcCCCHHHEEEeC
Confidence 66777776578999999999987777543 22 2 24556899999998754
No 159
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=24.35 E-value=3.3e+02 Score=27.45 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCcEEEeCCCCc--HHHHHHHHhCCCEEEeC---------CHHHHHHHHHHHHHcCCceEEEEEEec
Q 012098 148 GNELRLALRAGFDPTKCIFNGNGKL--LEDLVLAAQEGVFVNVD---------SEFDLENIVVASRIAGKKVNVLLRINP 216 (471)
Q Consensus 148 ~~El~~a~~~G~~~~~Ii~~g~~k~--~~~l~~a~~~gv~i~vD---------s~~el~~l~~~a~~~g~~~~V~lRin~ 216 (471)
...++.+.++|++.-+|...-.-.. .+.++.+.+.|..+.++ +.+.+-.+.+.+.+.|.. .|.+.
T Consensus 103 ~~~v~~a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad---~I~l~- 178 (464)
T 2nx9_A 103 DTFVERAVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVD---SIALK- 178 (464)
T ss_dssp HHHHHHHHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCS---EEEEE-
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCC---EEEEc-
Q ss_pred CCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 217 DVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 217 ~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.+=-+..+.++.++++.+++. --..+|+|+|
T Consensus 179 ---------------DT~G~~~P~~v~~lv~~l~~~--~~~~i~~H~H 209 (464)
T 2nx9_A 179 ---------------DMAGILTPYAAEELVSTLKKQ--VDVELHLHCH 209 (464)
T ss_dssp ---------------ETTSCCCHHHHHHHHHHHHHH--CCSCEEEEEC
T ss_pred ---------------CCCCCcCHHHHHHHHHHHHHh--cCCeEEEEEC
No 160
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=24.22 E-value=4.2e+02 Score=24.93 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=33.8
Q ss_pred ceEEEecccC-CcHHHHHHHHHcCCceEEcCH--------------H----HHHHHHHCCCCCCcEEEe
Q 012098 118 SIIGYAIKAN-NNYKILEHLRKLGCGAVLVSG--------------N----ELRLALRAGFDPTKCIFN 167 (471)
Q Consensus 118 ~~i~yavKaN-~~~~vl~~l~~~G~g~~vaS~--------------~----El~~a~~~G~~~~~Ii~~ 167 (471)
..+...+-.- ..+.+++.+.+.|+.+.+... . -++.+.++|+++++|++.
T Consensus 136 a~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilD 204 (297)
T 1tx2_A 136 AHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILD 204 (297)
T ss_dssp CCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEe
Confidence 3467777664 377888888888887666541 1 234455688888888876
No 161
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=24.13 E-value=1.9e+02 Score=27.52 Aligned_cols=78 Identities=21% Similarity=0.037 Sum_probs=46.6
Q ss_pred CCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEEe-----CCHHHHHHHHH
Q 012098 127 NNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVNV-----DSEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~v-----Ds~~el~~l~~ 199 (471)
..++.-++.+. +.|+--...+..|+.. ...+ +-++..-|. .-.+.+..|++.|..+.+ .+.+|++.|.+
T Consensus 52 d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~v--D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~ 127 (340)
T 1zh8_A 52 SRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLV--DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVE 127 (340)
T ss_dssp CSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCC--SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCC--CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 44454444443 3465334567777643 1223 334444443 334566778899976544 58999999999
Q ss_pred HHHHcCCce
Q 012098 200 ASRIAGKKV 208 (471)
Q Consensus 200 ~a~~~g~~~ 208 (471)
++++.|..+
T Consensus 128 ~a~~~g~~~ 136 (340)
T 1zh8_A 128 LSEKSEKTV 136 (340)
T ss_dssp HHHHCSSCE
T ss_pred HHHHcCCeE
Confidence 998876543
No 162
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=23.94 E-value=4.4e+02 Score=24.48 Aligned_cols=96 Identities=24% Similarity=0.303 Sum_probs=57.3
Q ss_pred CCCCcEEEeCCC-CcHHHHHHHHhC-CCEE-EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCC-CCcccccCCCCCC
Q 012098 159 FDPTKCIFNGNG-KLLEDLVLAAQE-GVFV-NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQ-VHPYVATGNKNSK 234 (471)
Q Consensus 159 ~~~~~Ii~~g~~-k~~~~l~~a~~~-gv~i-~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~-~~~~~~tg~~~sK 234 (471)
++++++++.|.- .++++.+.+.+. |+.+ ..| ...++.+. +..+. -.|.|=++.+.-.. .-+ .|| ....
T Consensus 148 ~~~~~i~~iGiR~~~~~e~~~~~~~~~~~~~~~~-~~~~~~~l---~~l~~-~~vylSiDiDvlDpa~aP--gtg-tp~p 219 (287)
T 3lhl_A 148 VGDNKIFQFGIRSGTKEEFKFATEEKHTYMEIGG-IDTFENIV---NMLNG-KNIYLTIDLDVLDASVFP--GTG-TPEP 219 (287)
T ss_dssp HCTTSEEEEEECBCCHHHHHHHHTSCSSEEEETC-CTTHHHHH---HHTTT-CEEEEEEEGGGBCTTTCC--SBS-SCCS
T ss_pred cCcccEEEEEcCCCCHHHHHHHHhcCCCEEEecH-HhHHHHHH---HHcCC-CcEEEEEecCcCCHhhCC--CCC-CCCC
Confidence 346778776642 356777777777 7754 333 23333333 33332 25777776543211 111 122 3678
Q ss_pred CCCCHhHHHHHHHHHHcCCCCceEEEEEee
Q 012098 235 FGIRNEKLQWFLDAVKAHPNELKLVGAHCH 264 (471)
Q Consensus 235 fGi~~~el~~~l~~l~~~~~~l~l~Glh~H 264 (471)
.|++..|+..+++.+.+. +.+++|+..-
T Consensus 220 gGlt~~e~~~~l~~l~~~--~~~vvg~Div 247 (287)
T 3lhl_A 220 GGVNYREFQEIFKIIKNS--NINIVGCDIV 247 (287)
T ss_dssp SCBCHHHHTHHHHHHHTS--CCEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEEEE
Confidence 999999999999888633 4688888774
No 163
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=23.52 E-value=5.3e+02 Score=25.31 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=42.9
Q ss_pred ceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE-EEe------------------CCHHHHHHHHHHHH
Q 012098 142 GAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNV------------------DSEFDLENIVVASR 202 (471)
Q Consensus 142 g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~-i~v------------------Ds~~el~~l~~~a~ 202 (471)
|+|+++..|++ +.|.. .++..++..+.++.+.+.|+. +-+ .+++.+..+.+.|+
T Consensus 27 G~Dis~~~~~e---~~G~~----y~~~~G~~~d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~~d~~~~~~~a~~Ak 99 (399)
T 1ur4_A 27 GVDVSSIIALE---ESGVA----FYNESGKKQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRAT 99 (399)
T ss_dssp EEECTTHHHHH---HTTCC----CBCTTSCBCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHH
T ss_pred EEehhhhHHHH---HcCCe----eeCCCCccchHHHHHHHCCCCEEEEeeecCCcccccCccCCCCCCHHHHHHHHHHHH
Confidence 89999998876 46753 133223344556667778863 433 46788888888888
Q ss_pred HcCCceEEEEEEe
Q 012098 203 IAGKKVNVLLRIN 215 (471)
Q Consensus 203 ~~g~~~~V~lRin 215 (471)
+.| ++|+|-+.
T Consensus 100 ~~G--LkVlldfH 110 (399)
T 1ur4_A 100 ANG--MKLLADFH 110 (399)
T ss_dssp HTT--CEEEEEEC
T ss_pred HCC--CEEEEEec
Confidence 877 46666654
No 164
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=23.48 E-value=1.5e+02 Score=26.74 Aligned_cols=72 Identities=13% Similarity=0.195 Sum_probs=40.4
Q ss_pred EEEecccCCcHHHHHHHHH-c-----CCceEEcCHHHHHHHHHCCCCCCcEEEeCCCCcHHHHHHHHhCCCE--EEeCCH
Q 012098 120 IGYAIKANNNYKILEHLRK-L-----GCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF--VNVDSE 191 (471)
Q Consensus 120 i~yavKaN~~~~vl~~l~~-~-----G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k~~~~l~~a~~~gv~--i~vDs~ 191 (471)
+-+-.|.....+.++.+.+ . |.|. +.+..+++.|+++|.+ -+ ..| +.+.+-++.+.+.|+. +-+.+.
T Consensus 55 iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl~~d~~~~A~~aGAd--~v-~~p-~~d~~v~~~~~~~g~~~i~G~~t~ 129 (225)
T 1mxs_A 55 LEVTLRSQHGLKAIQVLREQRPELCVGAGT-VLDRSMFAAVEAAGAQ--FV-VTP-GITEDILEAGVDSEIPLLPGISTP 129 (225)
T ss_dssp EEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CCSHHHHHHHHHHTCS--SE-ECS-SCCHHHHHHHHHCSSCEECEECSH
T ss_pred EEEecCCccHHHHHHHHHHhCcccEEeeCe-EeeHHHHHHHHHCCCC--EE-EeC-CCCHHHHHHHHHhCCCEEEeeCCH
Confidence 3444665444455554443 2 2233 4467888888888763 23 333 4565555666667752 357777
Q ss_pred HHHHH
Q 012098 192 FDLEN 196 (471)
Q Consensus 192 ~el~~ 196 (471)
+|+..
T Consensus 130 ~e~~~ 134 (225)
T 1mxs_A 130 SEIMM 134 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77644
No 165
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=23.09 E-value=2.8e+02 Score=25.84 Aligned_cols=76 Identities=5% Similarity=-0.005 Sum_probs=44.7
Q ss_pred CCcHHHHHHHHH-cCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEEe-----CCHHHHHHHHH
Q 012098 127 NNNYKILEHLRK-LGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVNV-----DSEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~~-~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~v-----Ds~~el~~l~~ 199 (471)
+.++.-++.+.+ .|..-...+..|+. +..+ +-++..-|. ...+.+..|++.|..+.+ -+.+|.+.|.+
T Consensus 33 d~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~--D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 107 (325)
T 2ho3_A 33 SRKLETAATFASRYQNIQLFDQLEVFF---KSSF--DLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQ 107 (325)
T ss_dssp CSSHHHHHHHGGGSSSCEEESCHHHHH---TSSC--SEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHH
T ss_pred eCCHHHHHHHHHHcCCCeEeCCHHHHh---CCCC--CEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHH
Confidence 445554554433 34323345777653 3333 344444442 234556777888976544 47899999999
Q ss_pred HHHHcCCc
Q 012098 200 ASRIAGKK 207 (471)
Q Consensus 200 ~a~~~g~~ 207 (471)
++++.|..
T Consensus 108 ~a~~~g~~ 115 (325)
T 2ho3_A 108 TAEKNNCF 115 (325)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCE
Confidence 99887654
No 166
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=22.63 E-value=42 Score=26.31 Aligned_cols=71 Identities=13% Similarity=0.227 Sum_probs=38.0
Q ss_pred ceEEcCCCCCCCCceEEEEEccCCCCCceeccC-CCCCCCCCCCEEEEcCCCccccccCCCCCCCCCCcEEEEECCeEE
Q 012098 388 HIELVSPAPQDAEISKFDVVGPVCESADFLGKE-RELPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRSLISI 465 (471)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~i~G~tC~~~D~l~~~-~~lP~~~~GD~l~~~~~GAY~~~~~~~fn~~~~p~~v~v~~~~~~ 465 (471)
.+.+++.. ......+|.|.|+--. + +++.+ .---..++||.|+|..-+-+...-..+ .+|.+|+++.+..+
T Consensus 19 ~V~IvNvn-NG~Rf~TYvI~GerGS-G-~I~lNGAAArl~~~GD~vII~aY~~~~~~e~~~----~~P~vV~vd~~N~i 90 (96)
T 1vc3_B 19 QVDIYDIT-NGARLTTYALPGERGS-G-VIGINGAAAHLVKPGDLVILVAYGVFDEEEARN----LKPTVVLVDERNRI 90 (96)
T ss_dssp EEEEEETT-TCCEEEEECEEECTTT-T-CEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTT----CCCEEEEECTTCCE
T ss_pred EEEEEECC-CCceEEEEEEEccCCC-C-eEEEchHHHccCCCCCEEEEEECccCCHHHHhc----CCCEEEEECCCCCE
Confidence 34454432 2234567788885432 1 22211 100125889999998544433333333 46999999866543
No 167
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=22.47 E-value=1.7e+02 Score=28.05 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=31.2
Q ss_pred ceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCC
Q 012098 207 KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGS 267 (471)
Q Consensus 207 ~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs 267 (471)
...|++|+++.. ...-|++.++..++++.+.+. ++.. ||.|.++
T Consensus 209 ~~pv~vris~~~-------------~~~~g~~~~~~~~~a~~l~~~--Gvd~--i~v~~~~ 252 (338)
T 1z41_A 209 DGPLFVRVSASD-------------YTDKGLDIADHIGFAKWMKEQ--GVDL--IDCSSGA 252 (338)
T ss_dssp CSCEEEEEECCC-------------CSTTSCCHHHHHHHHHHHHHT--TCCE--EEEECCC
T ss_pred CCcEEEEecCcc-------------cCCCCCCHHHHHHHHHHHHHc--CCCE--EEEecCc
Confidence 568999999752 112378888888899988876 4544 6777664
No 168
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.44 E-value=2.3e+02 Score=26.70 Aligned_cols=78 Identities=13% Similarity=0.067 Sum_probs=47.4
Q ss_pred CCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEE-----eCCHHHHHHHHH
Q 012098 127 NNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVN-----VDSEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~-----vDs~~el~~l~~ 199 (471)
+.++.-++.+. +.|+.-...+..|+.. ...+ +-++..-|. .-.+.+..|++.|..+. .-+.+|++.|.+
T Consensus 36 d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~v--D~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~ 111 (334)
T 3ohs_X 36 ARDLSRAKEFAQKHDIPKAYGSYEELAK--DPNV--EVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVT 111 (334)
T ss_dssp CSSHHHHHHHHHHHTCSCEESSHHHHHH--CTTC--CEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCC--CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 45555555444 3465434667777653 1223 334443443 33455677888997654 458999999999
Q ss_pred HHHHcCCce
Q 012098 200 ASRIAGKKV 208 (471)
Q Consensus 200 ~a~~~g~~~ 208 (471)
++++.|..+
T Consensus 112 ~a~~~~~~~ 120 (334)
T 3ohs_X 112 EARSRGLFL 120 (334)
T ss_dssp HHHHTTCCE
T ss_pred HHHHhCCEE
Confidence 998876543
No 169
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=22.43 E-value=1.6e+02 Score=28.11 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=46.0
Q ss_pred CCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEEE-----eCCHHHHHHHHH
Q 012098 127 NNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFVN-----VDSEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i~-----vDs~~el~~l~~ 199 (471)
+.++.-++.+. +.|+.. +.+..|+.. . -+.+-++.+.|. ...+.+..|++.|..+. .-+.+|++.|.+
T Consensus 60 d~~~~~~~~~a~~~g~~~-~~~~~~ll~---~-~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~ 134 (350)
T 3rc1_A 60 SRRWDRAKRFTERFGGEP-VEGYPALLE---R-DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFA 134 (350)
T ss_dssp ESSHHHHHHHHHHHCSEE-EESHHHHHT---C-TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCC-cCCHHHHhc---C-CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHH
Confidence 44444445443 346543 267777642 1 122334443443 33455677888997644 468999999999
Q ss_pred HHHHcCCce
Q 012098 200 ASRIAGKKV 208 (471)
Q Consensus 200 ~a~~~g~~~ 208 (471)
++++.|..+
T Consensus 135 ~a~~~g~~~ 143 (350)
T 3rc1_A 135 VARERGLLL 143 (350)
T ss_dssp HHHHTTCCE
T ss_pred HHHHhCCEE
Confidence 998877644
No 170
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=22.41 E-value=4.8e+02 Score=24.39 Aligned_cols=99 Identities=15% Similarity=0.109 Sum_probs=45.6
Q ss_pred EeHHHHHHHHHHHHHHhcCCCceEEEecccCC------cHHHHHHHHHcCCceEEc----CHHHHHHHHHCCCCCCcEEE
Q 012098 97 YSKPQITRNVEAYKQALEGLNSIIGYAIKANN------NYKILEHLRKLGCGAVLV----SGNELRLALRAGFDPTKCIF 166 (471)
Q Consensus 97 ~d~~~l~~n~~~~~~a~~~~~~~i~yavKaN~------~~~vl~~l~~~G~g~~va----S~~El~~a~~~G~~~~~Ii~ 166 (471)
.+.+.+.+.++.+.+. +.. .+.+.-=-++ ...+++.+.+.+..+.+. +...++...++|++ .+.+
T Consensus 84 ls~eei~~~i~~~~~~--g~~-~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~l~~e~l~~L~~ag~~--~v~i 158 (348)
T 3iix_A 84 MTPEEIVERARLAVQF--GAK-TIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGAD--RYLL 158 (348)
T ss_dssp CCHHHHHHHHHHHHHT--TCS-EEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCCCCHHHHHHHHHHTCC--EEEC
T ss_pred CCHHHHHHHHHHHHHC--CCC-EEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCCCCHHHHHHHHHhCCC--EEee
Confidence 5677777777665541 221 2332211111 234555555555433322 46666666677763 4443
Q ss_pred eCCCCcHHHHHHHHhCCCEEEeCCHHHHHHHHHHHHHcCC
Q 012098 167 NGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGK 206 (471)
Q Consensus 167 ~g~~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~g~ 206 (471)
+.-...+++...+..+. +.++.....+.+++.|.
T Consensus 159 -~let~~~~~~~~i~~~~-----~~~~~~~~i~~~~~~Gi 192 (348)
T 3iix_A 159 -RHETANPVLHRKLRPDT-----SFENRLNCLLTLKELGY 192 (348)
T ss_dssp -CCBCSCHHHHHHHSTTS-----CHHHHHHHHHHHHHTTC
T ss_pred -eeeeCCHHHHHHhCCCc-----CHHHHHHHHHHHHHhCC
Confidence 32111123333333222 55555555555665554
No 171
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=22.14 E-value=4.7e+02 Score=24.88 Aligned_cols=53 Identities=23% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHHHc--CC--ceEEcCHHHHHHHHHCCCCCCcEEEeCCC-CcHHHHHHHHhCCCEE
Q 012098 131 KILEHLRKL--GC--GAVLVSGNELRLALRAGFDPTKCIFNGNG-KLLEDLVLAAQEGVFV 186 (471)
Q Consensus 131 ~vl~~l~~~--G~--g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k~~~~l~~a~~~gv~i 186 (471)
.+++.+.+. ++ .+|......++.|+++|.+ ||..-.+ ..++.+..+.++|+-+
T Consensus 106 pvI~~l~~~~~~vpISIDT~~~~VaeaAl~aGa~---iINDVsg~~d~~m~~vaa~~g~~v 163 (318)
T 2vp8_A 106 PFIEWLRGAYPDQLISVDTWRAQVAKAACAAGAD---LINDTWGGVDPAMPEVAAEFGAGL 163 (318)
T ss_dssp HHHHHHHHHSTTCEEEEECSCHHHHHHHHHHTCC---EEEETTSSSSTTHHHHHHHHTCEE
T ss_pred HHHHHHHhhCCCCeEEEeCCCHHHHHHHHHhCCC---EEEECCCCCchHHHHHHHHhCCCE
Confidence 456666655 54 7888889999999999873 6654332 3456677778888753
No 172
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=21.62 E-value=2.1e+02 Score=25.83 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCC-ceEEcCHHHHHHHHHC-CCCCCcE-----------EEeCCCCcHHHHHHHHhCCCE-EEeC-----C
Q 012098 130 YKILEHLRKLGC-GAVLVSGNELRLALRA-GFDPTKC-----------IFNGNGKLLEDLVLAAQEGVF-VNVD-----S 190 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~vaS~~El~~a~~~-G~~~~~I-----------i~~g~~k~~~~l~~a~~~gv~-i~vD-----s 190 (471)
..+++...+.|+ ++.+.|..+++.+++. ..| -| +|..+ +.++++.+++.|+. +.++ +
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~P--vig~~k~d~~~~~~~I~~--~~~~i~~~~~~Gad~V~l~~~~~~~ 114 (232)
T 3igs_A 39 AAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVP--IIGIIKRDLDESPVRITP--FLDDVDALAQAGAAIIAVDGTARQR 114 (232)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSC--EEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEECCSSCC
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCC--EEEEEeecCCCcceEeCc--cHHHHHHHHHcCCCEEEECccccCC
Confidence 456666666675 7888888888887764 221 11 11122 34567777777763 3332 2
Q ss_pred HHHHHHHHHHHHHcC
Q 012098 191 EFDLENIVVASRIAG 205 (471)
Q Consensus 191 ~~el~~l~~~a~~~g 205 (471)
.++++.+.+.+++.|
T Consensus 115 p~~l~~~i~~~~~~g 129 (232)
T 3igs_A 115 PVAVEALLARIHHHH 129 (232)
T ss_dssp SSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 345666666666554
No 173
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.59 E-value=46 Score=23.44 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCCCCCHhHHHHHHHHHHcCCCCceEE
Q 012098 232 NSKFGIRNEKLQWFLDAVKAHPNELKLV 259 (471)
Q Consensus 232 ~sKfGi~~~el~~~l~~l~~~~~~l~l~ 259 (471)
..+||++.++...+++++++.+ .+++.
T Consensus 32 a~kygV~kdeV~~~LrrLe~KG-LI~le 58 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALKNKG-LIAVE 58 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCC-Ceecc
Confidence 5789999999999999998875 55553
No 174
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=21.57 E-value=2.4e+02 Score=25.32 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=5.5
Q ss_pred HhHHHHHHHHHH
Q 012098 239 NEKLQWFLDAVK 250 (471)
Q Consensus 239 ~~el~~~l~~l~ 250 (471)
.+++.++++.++
T Consensus 141 ~~~~~~ll~~v~ 152 (264)
T 1yx1_A 141 IEVLERFFRLAE 152 (264)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 175
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.52 E-value=3.2e+02 Score=21.94 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=38.1
Q ss_pred HHHCCCCCCcEEEeCCCCcHHH---HHHHHhCCC-E-EEeC----CHHHHHHHHHHHHHcCCceEEEEE
Q 012098 154 ALRAGFDPTKCIFNGNGKLLED---LVLAAQEGV-F-VNVD----SEFDLENIVVASRIAGKKVNVLLR 213 (471)
Q Consensus 154 a~~~G~~~~~Ii~~g~~k~~~~---l~~a~~~gv-~-i~vD----s~~el~~l~~~a~~~g~~~~V~lR 213 (471)
....|++++++++.-+.+..+. ++.|++.|- . ++.. +..+..+|.-+|+. |...-+.+|
T Consensus 50 L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RRLqlAA~~-g~~~~~l~R 117 (119)
T 1ofu_X 50 LRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQL-GQAQSLNIR 117 (119)
T ss_dssp HHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHH-HTCEEEEEE
T ss_pred HHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHHHHHHHh-CCCeEEEec
Confidence 3468999999999888554443 344555653 3 3322 67778888776655 555666666
No 176
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=21.47 E-value=3.2e+02 Score=26.51 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=49.3
Q ss_pred cCCcHHHHHHHHH-cCCc--eEEcCHHHHHHHHH---CCCCCCcEEEeCC-CCcHHHHHHHHhCCCEEEe-----CCHHH
Q 012098 126 ANNNYKILEHLRK-LGCG--AVLVSGNELRLALR---AGFDPTKCIFNGN-GKLLEDLVLAAQEGVFVNV-----DSEFD 193 (471)
Q Consensus 126 aN~~~~vl~~l~~-~G~g--~~vaS~~El~~a~~---~G~~~~~Ii~~g~-~k~~~~l~~a~~~gv~i~v-----Ds~~e 193 (471)
+..++.-++.+.+ .|+. -...+..|+....+ -.+ +-++...| ..-.+.+..|++.|..+.+ -+++|
T Consensus 47 ~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~v--D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e 124 (398)
T 3dty_A 47 FDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGI--QAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQ 124 (398)
T ss_dssp CCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCC--SEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHH
T ss_pred eCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCC--CEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHH
Confidence 3555555555443 4652 23467888765422 123 34444444 3334567778899987654 58999
Q ss_pred HHHHHHHHHHcCCc
Q 012098 194 LENIVVASRIAGKK 207 (471)
Q Consensus 194 l~~l~~~a~~~g~~ 207 (471)
++.|.+++++.|..
T Consensus 125 a~~l~~~a~~~g~~ 138 (398)
T 3dty_A 125 AENLRELSHKHNRI 138 (398)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCe
Confidence 99999999887754
No 177
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.46 E-value=98 Score=28.28 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHhCCCE---E----EeCCHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHH
Q 012098 176 LVLAAQEGVF---V----NVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDA 248 (471)
Q Consensus 176 l~~a~~~gv~---i----~vDs~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~ 248 (471)
+..+.+.|+. + -..+++|+..+.++|.+.|- ++. | || ||+.+.+.++++.
T Consensus 151 iaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~----~lE--P-----------TG------GIdl~N~~~I~~i 207 (249)
T 3m0z_A 151 IALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF----WLE--P-----------TG------GIDLENYSEILKI 207 (249)
T ss_dssp HHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC----EEE--E-----------BS------SCCTTTHHHHHHH
T ss_pred HHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc----eEC--C-----------CC------CccHhhHHHHHHH
Confidence 4455567752 2 25899999999998887653 333 2 45 8999999998888
Q ss_pred HHcCCCCceEEEEEe
Q 012098 249 VKAHPNELKLVGAHC 263 (471)
Q Consensus 249 l~~~~~~l~l~Glh~ 263 (471)
+.+. ++..+-=|.
T Consensus 208 ~l~a--Gv~~viPHI 220 (249)
T 3m0z_A 208 ALDA--GVSKIIPHI 220 (249)
T ss_dssp HHHH--TCSCBCCBC
T ss_pred HHHc--CCCeecccc
Confidence 7776 566544444
No 178
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=21.22 E-value=4.3e+02 Score=23.37 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=11.6
Q ss_pred cHHHHHHHHHcCC-ceEEc
Q 012098 129 NYKILEHLRKLGC-GAVLV 146 (471)
Q Consensus 129 ~~~vl~~l~~~G~-g~~va 146 (471)
....++.+.+.|. ++|+.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~ 50 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIK 50 (257)
T ss_dssp HHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 4566677777775 66655
No 179
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=21.05 E-value=1.2e+02 Score=29.87 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=51.3
Q ss_pred HHHHHHHHHHH-cCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHcCCCCceEEEEEeecCCCCCC
Q 012098 193 DLENIVVASRI-AGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITK 271 (471)
Q Consensus 193 el~~l~~~a~~-~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~~~~~l~l~Glh~H~Gs~~~~ 271 (471)
-++..-+.|++ ..+..++++ |-- ++ .. -+ ..+.+.++++.+++.+..+.-+|++.|++....+
T Consensus 180 ~i~~af~~Ar~~adP~a~L~~--NDy---------n~--~~--~~-k~~~~~~~v~~l~~~g~piDgIG~Q~H~~~~~p~ 243 (379)
T 1r85_A 180 YIKVAFQAARKYGGDNIKLYM--NDY---------NT--EV--EP-KRTALYNLVKQLKEEGVPIDGIGHQSHIQIGWPS 243 (379)
T ss_dssp HHHHHHHHHHHHHCTTSEEEE--EES---------CT--TS--TT-HHHHHHHHHHHHHHTTCCCCEEEECCEECSSSSC
T ss_pred HHHHHHHHHHhhCCCCCEEEe--ccc---------cc--cc--ch-hHHHHHHHHHHHHHCCCceeEEEEeEEecCCCCC
Confidence 34444556777 777777765 411 00 01 01 2345666777777764347899999998654445
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--CEEEecCCC
Q 012098 272 VDIFRDAAVLMVNYIDKIRAQGFEV--DYLNIGGGL 305 (471)
Q Consensus 272 ~~~~~~~~~~~~~~~~~l~~~g~~l--~~ldiGGGl 305 (471)
.+.+++. ++.+.+.|.++ .-+|+....
T Consensus 244 ~~~~~~~-------l~~~a~lGlpI~iTElDi~~~~ 272 (379)
T 1r85_A 244 EAEIEKT-------INMFAALGLDNQITELDVSMYG 272 (379)
T ss_dssp HHHHHHH-------HHHHHHTTCEEEEEEEEECSSC
T ss_pred HHHHHHH-------HHHHHhcCCeEEEeeccccCCC
Confidence 5544444 34455567654 457887543
No 180
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.95 E-value=1.5e+02 Score=28.23 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=58.9
Q ss_pred EEeHHHHHHH--HHHHHHHhcCCCceEEEecccCCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCC-C
Q 012098 96 LYSKPQITRN--VEAYKQALEGLNSIIGYAIKANNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNG-K 171 (471)
Q Consensus 96 v~d~~~l~~n--~~~~~~a~~~~~~~i~yavKaN~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~-k 171 (471)
|+=...+-++ +..++ ..++ +++... +..++.-++.+. +.|+.-...+..|+.. .-.+ +-++.+-|. .
T Consensus 28 iIG~G~ig~~~~~~~~~-~~~~--~~lvav--~d~~~~~a~~~a~~~g~~~~y~d~~ell~--~~~i--DaV~I~tP~~~ 98 (350)
T 4had_A 28 IISTAKIGRDNVVPAIQ-DAEN--CVVTAI--ASRDLTRAREMADRFSVPHAFGSYEEMLA--SDVI--DAVYIPLPTSQ 98 (350)
T ss_dssp EESCCHHHHHTHHHHHH-HCSS--EEEEEE--ECSSHHHHHHHHHHHTCSEEESSHHHHHH--CSSC--SEEEECSCGGG
T ss_pred EEcChHHHHHHHHHHHH-hCCC--eEEEEE--ECCCHHHHHHHHHHcCCCeeeCCHHHHhc--CCCC--CEEEEeCCCch
Confidence 4555555432 23333 2343 444433 345555555544 3576444567777753 1223 344444443 3
Q ss_pred cHHHHHHHHhCCCEEE-----eCCHHHHHHHHHHHHHcCCce
Q 012098 172 LLEDLVLAAQEGVFVN-----VDSEFDLENIVVASRIAGKKV 208 (471)
Q Consensus 172 ~~~~l~~a~~~gv~i~-----vDs~~el~~l~~~a~~~g~~~ 208 (471)
-.+....|++.|..+. .-+.+|+++|.+++++.|..+
T Consensus 99 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l 140 (350)
T 4had_A 99 HIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVV 140 (350)
T ss_dssp HHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCE
T ss_pred hHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCce
Confidence 3455677889997654 458899999999998877543
No 181
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=20.90 E-value=1e+02 Score=30.80 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCceEEEEEEecCCCCCCCcccccCCCCCCCCCCHhHHHHHHHHHHc-CCCCceEEEEEeecCC
Q 012098 205 GKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA-HPNELKLVGAHCHLGS 267 (471)
Q Consensus 205 g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~~el~~~l~~l~~-~~~~l~l~Glh~H~Gs 267 (471)
++...|++|+++... .....|++.++..++++.+.+ . ++.. ||.|.+.
T Consensus 240 ~~~f~v~vRis~~~~-----------~~~~~G~~~ed~~~la~~L~~~~--Gvd~--I~vs~g~ 288 (419)
T 3l5a_A 240 PDNFILGFRATPEET-----------RGSDLGYTIDEFNQLIDWVMDVS--NIQY--LAIASWG 288 (419)
T ss_dssp CTTCEEEEEECSCEE-----------ETTEEEECHHHHHHHHHHHHHHS--CCCC--EEECCTT
T ss_pred CCCeeEEEecccccc-----------cCCCCCCCHHHHHHHHHHHHhhc--CCcE--EEEeeCC
Confidence 667899999987521 011237888999999998887 6 4554 7777664
No 182
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=20.74 E-value=2.5e+02 Score=27.34 Aligned_cols=80 Identities=20% Similarity=0.141 Sum_probs=49.5
Q ss_pred CCcHHHHHHHH-HcCCceEEcCHHHHHHHHHCCCCCCcEEEeCCCC-cHHHHHHHHhCCCEEE-----eCCHHHHHHHHH
Q 012098 127 NNNYKILEHLR-KLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGK-LLEDLVLAAQEGVFVN-----VDSEFDLENIVV 199 (471)
Q Consensus 127 N~~~~vl~~l~-~~G~g~~vaS~~El~~a~~~G~~~~~Ii~~g~~k-~~~~l~~a~~~gv~i~-----vDs~~el~~l~~ 199 (471)
..++.-++.+. +.|+--...+..|+.. ...+ +-++.+.|.. -.+....|++.|..+. .-+.+|++.|.+
T Consensus 66 d~~~~~a~~~a~~~~~~~~y~d~~~ll~--~~~v--D~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~ 141 (412)
T 4gqa_A 66 DQDQAMAERHAAKLGAEKAYGDWRELVN--DPQV--DVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQ 141 (412)
T ss_dssp CSSHHHHHHHHHHHTCSEEESSHHHHHH--CTTC--CEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCeEECCHHHHhc--CCCC--CEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHH
Confidence 55555555544 3565434567777643 2233 4444444433 3455677889997644 569999999999
Q ss_pred HHHHcCCceEE
Q 012098 200 ASRIAGKKVNV 210 (471)
Q Consensus 200 ~a~~~g~~~~V 210 (471)
++++.|..+.|
T Consensus 142 ~a~~~g~~~~v 152 (412)
T 4gqa_A 142 AARRAGVKTMV 152 (412)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHhCCeeee
Confidence 99988765433
No 183
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=20.14 E-value=4.2e+02 Score=23.85 Aligned_cols=151 Identities=10% Similarity=0.071 Sum_probs=76.0
Q ss_pred HHHHHHHHhCCC---EEEeC-----CHHHHHHHHHHHHHcCCceEEEEEEecCCCCCCCcccccCCCCCCCCCCH-----
Q 012098 173 LEDLVLAAQEGV---FVNVD-----SEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRN----- 239 (471)
Q Consensus 173 ~~~l~~a~~~gv---~i~vD-----s~~el~~l~~~a~~~g~~~~V~lRin~~~~~~~~~~~~tg~~~sKfGi~~----- 239 (471)
.+.++.+.+.|+ -+..+ +.++++.+.+.+++.|-++... ..+.. . .+-.+-++
T Consensus 20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~--~~~~~------~------~~l~~~d~~~r~~ 85 (294)
T 3vni_A 20 KYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVG--HGPSA------E------QNLSSPDPDIRKN 85 (294)
T ss_dssp HHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEE--ECCCG------G------GCTTCSCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEe--ecCCC------C------cCCCCCCHHHHHH
Confidence 445666666664 23422 4667888888888777544331 11100 0 00011122
Q ss_pred --hHHHHHHHHHHcCCCCceEEEEEeecCCC-----CCC-HHHHHHHHHHHHHHHHHHHHcCCCCCEEEecCCCCcCCCC
Q 012098 240 --EKLQWFLDAVKAHPNELKLVGAHCHLGST-----ITK-VDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYH 311 (471)
Q Consensus 240 --~el~~~l~~l~~~~~~l~l~Glh~H~Gs~-----~~~-~~~~~~~~~~~~~~~~~l~~~g~~l~~ldiGGGl~i~y~~ 311 (471)
+.+.+.++.++.. +...+.+.+|.|.. ..+ .+.+...++.+.++.+..++.|+.+-+=+.+. +.
T Consensus 86 ~~~~~~~~i~~a~~l--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~-~~----- 157 (294)
T 3vni_A 86 AKAFYTDLLKRLYKL--DVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNR-FE----- 157 (294)
T ss_dssp HHHHHHHHHHHHHHH--TCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCT-TT-----
T ss_pred HHHHHHHHHHHHHHh--CCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCc-cc-----
Confidence 3345566666666 45555445565431 112 23455555556666666667787654444432 11
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCcEEEEcccceeec
Q 012098 312 TGAVLPKPRNLIDTVRELVLSRNLNLIIEPGRSLIA 347 (471)
Q Consensus 312 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~EpGR~lva 347 (471)
.....+++++.+.++.. ...++.+.+-+|.....
T Consensus 158 -~~~~~~~~~~~~l~~~v-~~~~vg~~~D~~h~~~~ 191 (294)
T 3vni_A 158 -NYLINTAQEGVDFVKQV-DHNNVKVMLDTFHMNIE 191 (294)
T ss_dssp -CSSCCSHHHHHHHHHHH-CCTTEEEEEEHHHHHHH
T ss_pred -CcccCCHHHHHHHHHHc-CCCCEEEEEEhhhhHHc
Confidence 11123456665555443 34457777777766543
No 184
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=20.11 E-value=2e+02 Score=25.88 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCC-ceEEcCHHHHHHHHHC-CCCCCcE-----------EEeCCCCcHHHHHHHHhCCCE-EEeC-----C
Q 012098 130 YKILEHLRKLGC-GAVLVSGNELRLALRA-GFDPTKC-----------IFNGNGKLLEDLVLAAQEGVF-VNVD-----S 190 (471)
Q Consensus 130 ~~vl~~l~~~G~-g~~vaS~~El~~a~~~-G~~~~~I-----------i~~g~~k~~~~l~~a~~~gv~-i~vD-----s 190 (471)
..+++...+.|+ ++.+.|..+++.+++. ..| -| +|..+ +.++++.+++.|+. +.+| +
T Consensus 39 ~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~P--vig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~I~l~~~~~~~ 114 (229)
T 3q58_A 39 AAMAQAAASAGAVAVRIEGIENLRTVRPHLSVP--IIGIIKRDLTGSPVRITP--YLQDVDALAQAGADIIAFDASFRSR 114 (229)
T ss_dssp HHHHHHHHHTTCSEEEEESHHHHHHHGGGCCSC--EEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSEEEEECCSSCC
T ss_pred HHHHHHHHHCCCcEEEECCHHHHHHHHHhcCCC--EEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCEEEECccccCC
Confidence 456666666776 8999999999888864 222 11 12222 45678888888863 3333 3
Q ss_pred HHHHHHHHHHHHHcC
Q 012098 191 EFDLENIVVASRIAG 205 (471)
Q Consensus 191 ~~el~~l~~~a~~~g 205 (471)
.++++.+.+.+++.|
T Consensus 115 p~~l~~~i~~~~~~g 129 (229)
T 3q58_A 115 PVDIDSLLTRIRLHG 129 (229)
T ss_dssp SSCHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHCC
Confidence 356677777776654
Done!