RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012098
(471 letters)
>d1twia2 c.1.6.1 (A:50-313) Diaminopimelate decarboxylase LysA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 264
Score = 124 bits (311), Expect = 3e-33
Identities = 95/264 (35%), Positives = 145/264 (54%), Gaps = 14/264 (5%)
Query: 98 SKPQITRNVEAYKQALE------GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNEL 151
S+ QI N Y +A + G I+ YA KAN N I L KLGCGA +VSG EL
Sbjct: 1 SEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGEL 60
Query: 152 RLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNV 210
+A + K +FNGN K E++++ + + NVDS +L I ++ G+ NV
Sbjct: 61 YIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANV 120
Query: 211 LLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNEL-KLVGAHCHLGSTI 269
RINP+V+P+ HP ++TG K +KFG+ E A E +VG HCH+GS +
Sbjct: 121 AFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVHCHIGSQL 180
Query: 270 TKVDIFRDAAVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVREL 329
T + F + +++++ +++ +G E++ +N+GGGLGI YY + P ++L D +
Sbjct: 181 TDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQI-PTQKDLADAIINT 239
Query: 330 VLS-----RNLNLIIEPGRSLIAN 348
+L NLI+EPGRSL+A
Sbjct: 240 MLKYKDKVEMPNLILEPGRSLVAT 263
>d1knwa1 b.49.2.3 (A:2-31,A:279-422) Diaminopimelate decarboxylase
LysA {Escherichia coli [TaxId: 562]}
Length = 174
Score = 118 bits (298), Expect = 3e-32
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 319 PRNLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELI 378
P +L T +L L L E G + L+ V VK G+++F+++D +L+
Sbjct: 1 PHSLFSTDTDLTAENLLRLPAEFGCPVWVYV--LITQVRSVKQMGSRHFVLVDAGFNDLM 58
Query: 379 RPSLYDAYQHIELVSPAPQD---AEISKFDVVGPVCESADFLGKE-------RELPTPDR 428
RP++Y +Y HI ++ + A + V GP+CES D ++ R LP
Sbjct: 59 RPAMYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKA 118
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVR 460
G LV+HD GAY SM+S YN + PE
Sbjct: 119 GDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD 150
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 265
Score = 116 bits (290), Expect = 2e-30
Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 14/261 (5%)
Query: 102 ITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDP 161
A G + + YA KA ++ + + G + +G EL +AL A F P
Sbjct: 5 FRSRCRETAAAF-GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPP 63
Query: 162 TKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDP 220
+ +GN K + +L A + GV + VDS ++E + + AG +VL+R+ V+
Sbjct: 64 ERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEA 123
Query: 221 QVHPYVATGNKNSKFGIRNEKLQWFLDA-VKAHPNELKLVGAHCHLGSTITKVDIFRDA- 278
H +++T +++ KFG+ + L+LVG H H+GS I VD F A
Sbjct: 124 HTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAA 183
Query: 279 ----AVLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKP------RNLIDTVRE 328
+L + + ++ +++GGGLGI Y + P ++
Sbjct: 184 HRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVSDEST 243
Query: 329 LVLSRNLNLIIEPGRSLIANT 349
V L++EPGR++
Sbjct: 244 AVGLPTPKLVVEPGRAIAGPG 264
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase
LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 181
Score = 108 bits (272), Expect = 2e-28
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 336 NLIIEPGRSLIAN----TCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIEL 391
L E G L V V V + ++ +DG M++ IR +LY A + L
Sbjct: 32 QLAQEYGTPLFVIITLYEVGTVKDVD-VSATAHRRYVSVDGGMSDNIRTALYGAQYDVRL 90
Query: 392 VSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDR-GAGLVVHDAGAYCMSMASTYNL 450
VS + +VG CES D + ++ +P R G + V GAYC S++S YN+
Sbjct: 91 VSRVSDAPPV-PARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNM 149
Query: 451 KMRPPEYWVR 460
RP V
Sbjct: 150 VGRPAVVAVH 159
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 240
Score = 108 bits (269), Expect = 1e-27
Identities = 56/254 (22%), Positives = 92/254 (36%), Gaps = 24/254 (9%)
Query: 101 QITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFD 160
I + + +AL + YA+K N++ I+ L +G G S E++L G
Sbjct: 4 DILKKHLRWLKALPRVT--PFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVP 61
Query: 161 PTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVD 219
+ I+ K + + AA GV + DSE +L + A A +
Sbjct: 62 AERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKA----------KLVLR 111
Query: 220 PQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 279
A + KFG + + L+ K + ++G H+GS T D F A
Sbjct: 112 IATDDSKAVCRLSVKFGATLKTSRLLLERAKELN--IDVIGVSFHVGSGCTDPDTFVQAV 169
Query: 280 VLMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV-----LSRN 334
D GF + L+IGGG K + + +
Sbjct: 170 SDARCVFDMATEVGFSMHLLDIGGGFPGSEDTK----LKFEEITSVINPALDKYFPSDSG 225
Query: 335 LNLIIEPGRSLIAN 348
+ +I EPGR +A+
Sbjct: 226 VRIIAEPGRYYVAS 239
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase
LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 170
Score = 105 bits (262), Expect = 3e-27
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 323 IDTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIVIDGSMAELIRPSL 382
I R + + + E + + L+ V +K +++ID M +++RP++
Sbjct: 9 IKDGRFFIDGYDAIELAEKFGTPLYVMGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAM 68
Query: 383 YDAYQHIELVSPAPQDAEISKFDVVGPVCESADFLGKERELPTPDRGAGLVVHDAGAYCM 442
Y+AY HI + + G +CES+D G++REL + G L + D GAY +
Sbjct: 69 YEAYHHIINCKVKNEKE---VVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGI 125
Query: 443 SMASTYNLKMRPPEYWVR 460
SMA+ YN + RP
Sbjct: 126 SMANNYNARGRPRMVLTS 143
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine
decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Length = 169
Score = 103 bits (259), Expect = 9e-27
Identities = 34/153 (22%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 324 DTVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV-------------- 369
+T L ++N E +A T L +V K V
Sbjct: 7 NTRDALCKKISMNTCDEGDPFFVAFT--LAVNVIAKKVTPGVQTDVGAHAESNAQSFMYY 64
Query: 370 IDGSMAELIRPSLYDAYQHIELVSPAP-QDAEISKFDVVGPVCESADFLGKERELPTPDR 428
++ + LYD L P + ++ V GP C+ D + + LP
Sbjct: 65 VNDGVYGSFNCILYDHAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQV 124
Query: 429 GAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
G L+ D GAY + S++N P Y+V S
Sbjct: 125 GEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVS 157
>d1knwa2 c.1.6.1 (A:32-278) Diaminopimelate decarboxylase LysA
{Escherichia coli [TaxId: 562]}
Length = 247
Score = 104 bits (260), Expect = 3e-26
Identities = 57/252 (22%), Positives = 95/252 (37%), Gaps = 16/252 (6%)
Query: 102 ITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDP 161
I R + A KQ ++ +A KA +N IL +R+ G VS E+ AL AG++P
Sbjct: 5 IRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNP 59
Query: 162 TKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQ 221
+ + + + +++ V LR+NP
Sbjct: 60 QTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHG 119
Query: 222 VHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVL 281
TG +NSK GI L LD ++ H +L + H + +
Sbjct: 120 HSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIG------SGVDYAHLEQV 173
Query: 282 MVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPR--NLIDTVRELV---LSRNLN 336
+ ++ G ++ ++ GGGL + Y + L + RE + L +
Sbjct: 174 CGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVK 233
Query: 337 LIIEPGRSLIAN 348
L IEPGR L+A
Sbjct: 234 LEIEPGRFLVAQ 245
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase
{Trypanosoma brucei [TaxId: 5691]}
Length = 240
Score = 102 bits (253), Expect = 2e-25
Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 22/253 (8%)
Query: 101 QITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFD 160
I R E +K+ L + YA+K N+++++L L LG G S E++ G
Sbjct: 4 DIVRKHETWKKCLPRVT--PFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVP 61
Query: 161 PTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDP 220
P K I+ K + + A GV V FD + + K ++LRI+
Sbjct: 62 PEKIIYANPCKQISHIRYARDSGVDVM---TFDCVDELEKVAKTHPKAKMVLRIST---- 114
Query: 221 QVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAV 280
+A + KFG + E ++ L+ + + G H+GS T F A
Sbjct: 115 --DDSLARCRLSVKFGAKVEDCRFILEQA--KKLNIDVTGVSFHVGSGSTDASTFAQAIS 170
Query: 281 LMVNYIDKIRAQGFEVDYLNIGGGLGIDYYHTGAVLPKPRNLIDTVRELV-----LSRNL 335
D GF + L+IGGG K + + + L
Sbjct: 171 DSRFVFDMGTELGFNMHILDIGGGFPGTRDAP----LKFEEIAGVINNALEKHFPPDLKL 226
Query: 336 NLIIEPGRSLIAN 348
++ EPGR +A+
Sbjct: 227 TIVAEPGRYYVAS 239
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine
decarboxylase (ODC) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 177
Score = 90.5 bits (224), Expect = 6e-22
Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 18/159 (11%)
Query: 321 NLID---TVRELVLSRNLNLIIEPGRSLIANTCCLVNHVTGVKTNGTKNFIV-------- 369
+++D T ++++ + + + L ++ KT +
Sbjct: 11 HILDEGFTAKDILDQKINEVSSSDDKDAFYVAFTLAVNIIAKKTVWKEQPGSDDEDESNE 70
Query: 370 ------IDGSMAELIRPSLYDAYQHIELVSPAP-QDAEISKFDVVGPVCESADFLGKERE 422
++ + LYD L+ P D + + GP C+ D + +
Sbjct: 71 QTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCN 130
Query: 423 LPTPDRGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVRS 461
LP G ++ + GAY ++ AST+N RP Y+V S
Sbjct: 131 LPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMS 169
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39,
N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Length = 114
Score = 32.5 bits (74), Expect = 0.027
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 227 ATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMV--N 284
++ + NS+F KL L + ++P + +G + T K+ A V+ + N
Sbjct: 22 SSRDPNSRFPR---KLHMLLTYLASNPQLEEEIGL-SWISDTEFKMKKKNVALVMGIKLN 77
Query: 285 YIDK-IRAQGFE 295
++ +R FE
Sbjct: 78 TLNVNLRDLAFE 89
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 377
Score = 27.3 bits (60), Expect = 4.2
Identities = 8/26 (30%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 19 QNPFPKIPISPLKTTLN-FQRTLKPF 43
+P P++P+ PL+ +L+ + + L+P
Sbjct: 3 TDPLPRLPVPPLQQSLDHYLKALQPI 28
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
{Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Length = 286
Score = 27.2 bits (59), Expect = 4.7
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVAT 228
+ IAG K+++ + DP H Y
Sbjct: 22 ITKNIAGDKIDLHSIVPIGQDP--HEYEPL 49
>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
N-terminal domain {Black sea rod (Plexaura homomalla)
[TaxId: 47982]}
Length = 366
Score = 26.9 bits (59), Expect = 5.5
Identities = 4/37 (10%), Positives = 11/37 (29%)
Query: 17 LTQNPFPKIPISPLKTTLNFQRTLKPFTLKAVLSQNP 53
+ N + +F + + + +NP
Sbjct: 132 IVMNTGEANIFWNSPSLEDFVPVEEGDAAEEYVYKNP 168
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 26.5 bits (57), Expect = 6.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVAT 228
IA V++ + P VDP H Y AT
Sbjct: 15 AVKNIAQGDVHLKGLMGPGVDP--HLYTAT 42
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp.
pcc 6803 [TaxId: 1148]}
Length = 279
Score = 26.8 bits (58), Expect = 6.6
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 199 VASRIAGKKVNVLLRINPDVDPQVHPYVAT 228
+ +AG K+ V + H Y T
Sbjct: 19 MVQNVAGDKLVVESITRIGAEI--HGYEPT 46
>d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii
[TaxId: 329]}
Length = 330
Score = 26.9 bits (58), Expect = 6.7
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 1 MAATQLCSNSASLSKALTQNPFPKIP--IS------PLKTTLNFQRTLKPFTLKAVLSQN 52
++ CS K +N F IP + + + +++
Sbjct: 258 TVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFVELVATR 317
Query: 53 PAK 55
PAK
Sbjct: 318 PAK 320
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 382
Score = 26.1 bits (57), Expect = 8.9
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 19 QNPFPKIPISPLKTTLN-FQRTLKPF 43
Q+ P +P+ L+ +L + ++KPF
Sbjct: 7 QDSLPSLPVPALEESLKKYLESVKPF 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0424 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,759,797
Number of extensions: 84223
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 21
Length of query: 471
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,185,626
Effective search space: 452909132
Effective search space used: 452909132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)