BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012099
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VZ6|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ6|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|C Chain C, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
pdb|1VZ7|D Chain D, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus
Length = 393
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 120/360 (33%), Positives = 176/360 (48%), Gaps = 26/360 (7%)
Query: 118 VVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTG 177
VV C++ + + AR V++ A AN ATG G ++ + VA L + E+LI STG
Sbjct: 54 VVLCREAV-ADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTG 112
Query: 178 VIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVG 237
VIG++ +++ L L + G D AA AI TTD K V V VGG +
Sbjct: 113 VIGRQYPMESIREHLKTL--EWPAGEGGFDRAARAIMTTDTRPKEVRV--SVGGATLV-- 166
Query: 238 GMAKGSGMIHPNMATMLGXXXXXXXXXXXXWRKMVKVAVNRSFNQITVDGDTSTNDTVXX 297
G+AKG GM+ P+MAT+L ++ + ++R+FN +++D DTST+DT
Sbjct: 167 GIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVL 226
Query: 298 XXXXXXXXXXXXXVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAE 357
+A + + L L K IA DGEGA LIEV+VTGA +A+
Sbjct: 227 FANGLAGEV--------DAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQ 278
Query: 358 AAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAAGYAG--VSFYQNKLRILLGDSLLM---- 411
A ++ +G DPNWGR+A A G Q ++ I G+ +
Sbjct: 279 AKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPPKA 338
Query: 412 DGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYDYVKINAEYTT 471
G Q RAA +LR G ID+++ D G+ +GCDL+ YV++N+EYTT
Sbjct: 339 RGDQADDALRAAVAEHLRGDEVVIG---IDLAIAD--GAFTVYGCDLTEGYVRLNSEYTT 393
>pdb|1VZ8|A Chain A, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus (Semet Structure)
pdb|1VZ8|B Chain B, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus (Semet Structure)
pdb|1VZ8|C Chain C, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus (Semet Structure)
pdb|1VZ8|D Chain D, Ornithine Acetyltransferase (Orf6 Gene Product -
Clavulanic Acid Biosynthesis) From Streptomyces
Clavuligerus (Semet Structure)
Length = 393
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 172/360 (47%), Gaps = 26/360 (7%)
Query: 118 VVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTG 177
VV C++ + + AR V++ A AN ATG G ++ + VA L + E LI STG
Sbjct: 54 VVLCREAV-ADGQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEXLIASTG 112
Query: 178 VIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVG 237
VIG++ +++ L L + G D AA AI TTD K V V VGG +
Sbjct: 113 VIGRQYPXESIREHLKTL--EWPAGEGGFDRAARAIXTTDTRPKEVRV--SVGGATLV-- 166
Query: 238 GMAKGSGMIHPNMATMLGXXXXXXXXXXXXWRKMVKVAVNRSFNQITVDGDTSTNDTVXX 297
G+AKG G + P+ AT+L ++ + +R+FN +++D DTST+DT
Sbjct: 167 GIAKGVGXLEPDXATLLTFFATDARLDPAEQDRLFRRVXDRTFNAVSIDTDTSTSDTAVL 226
Query: 298 XXXXXXXXXXXXXVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAE 357
+A + + L L K IA DGEGA LIEV+VTGA +A+
Sbjct: 227 FANGLAGEV--------DAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQ 278
Query: 358 AAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAAGYAG--VSFYQNKLRILLGDSLLM---- 411
A ++ +G DPNWGR+A A G Q ++ I G+ +
Sbjct: 279 AKRVGKTVVNSPLVKTAVHGCDPNWGRVAXAIGKCSDDTDIDQERVTIRFGEVEVYPPKA 338
Query: 412 DGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYDYVKINAEYTT 471
G Q RAA +LR + ID+++ D G+ +GCDL+ YV++N+EYTT
Sbjct: 339 RGDQADDALRAAVAEHLRG---DEVVIGIDLAIAD--GAFTVYGCDLTEGYVRLNSEYTT 393
>pdb|1VRA|B Chain B, Crystal Structure Of Arginine Biosynthesis Bifunctional
Protein Argj (10175521) From Bacillus Halodurans At 2.00
A Resolution
Length = 215
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 104/195 (53%), Gaps = 5/195 (2%)
Query: 277 NRSFNQITVDGDTSTNDTVXXXXXXXXXXXXXXXVDCNEAKQLQACLDAVMQGLAKSIAW 336
N +FN+ITVDGDTSTND V + A +A L + LAK IA
Sbjct: 26 NETFNRITVDGDTSTNDXVVVXASGLAENETLTPEHPDWANFYKA-LQLACEDLAKQIAR 84
Query: 337 DGEGATCLIEVRVTGANSEAEAAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAAGYAGVSF 396
DGEGAT LIEV VTGA ++ EA + YG D NWGRI A GY+G
Sbjct: 85 DGEGATKLIEVEVTGAANDQEAGXVAKQIVGSDLVKTAIYGADANWGRIICAIGYSGCEV 144
Query: 397 YQNKLRILLGDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGC 456
Q + I +G + + +P F A YL++A + +V + I G G+G+AWGC
Sbjct: 145 NQETIDIAIGPIVTLKQSEPTGFSEEEATAYLKEADPVKISVNLHI----GNGTGKAWGC 200
Query: 457 DLSYDYVKINAEYTT 471
DL+YDYV+INA Y T
Sbjct: 201 DLTYDYVRINAGYRT 215
>pdb|2VZK|D Chain D, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|F Chain F, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|H Chain H, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|B Chain B, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|D Chain D, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|F Chain F, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|H Chain H, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|B Chain B, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|D Chain D, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|H Chain H, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 270 KMVKVAVNRSFNQITVDGDTSTNDTVXXXXXXXXXXXXXXXVDCNEAKQLQACLDAVMQG 329
++ + ++R+FN +++D DTST+DT +A + + L
Sbjct: 19 RLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEV--------DAGEFEEALHTAALA 70
Query: 330 LAKSIAWDGEGATCLIEVRVTGANSEAEAAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAA 389
L K IA DGEGA LIEV+VTGA +A+A ++ +G DPNWGR+A A
Sbjct: 71 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAI 130
Query: 390 GYAG--VSFYQNKLRILLGDSLLM----DGGQPLPFDRAAAGNYLRKAGETRGTVFIDIS 443
G Q ++ I G+ + G Q RAA +LR G ID++
Sbjct: 131 GKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIG---IDLA 187
Query: 444 VGDGPGSGQAWGCDLSYDYVKINAEYTT 471
+ DG + +GCDL+ YV++N+EYTT
Sbjct: 188 IADGAFT--VYGCDLTEGYVRLNSEYTT 213
>pdb|2VZK|B Chain B, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2YEP|F Chain F, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 213
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 270 KMVKVAVNRSFNQITVDGDTSTNDTVXXXXXXXXXXXXXXXVDCNEAKQLQACLDAVMQG 329
++ + ++R+FN +++D DTST+DT +A + + L
Sbjct: 19 RLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEV--------DAGEFEEALHTAALA 70
Query: 330 LAKSIAWDGEGATCLIEVRVTGANSEAEAAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAA 389
L K IA DGEGA LIEV+VTGA +A+A ++ +G DPNWGR+A A
Sbjct: 71 LVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAI 130
Query: 390 GYAG--VSFYQNKLRILLGDSLLM----DGGQPLPFDRAAAGNYLRKAGETRGTVFIDIS 443
G Q ++ I G+ + G Q RAA +LR G ID++
Sbjct: 131 GKCSDDTDIDQERVTIRFGEVEVYPPKARGDQADDALRAAVAEHLRGDEVVIG---IDLA 187
Query: 444 VGDGPGSGQAWGCDLSYDYVKINAEYTT 471
+ DG + +GCDL+ YV++N+EYTT
Sbjct: 188 IADGAFT--VYGCDLTEGYVRLNSEYTT 213
>pdb|3IT4|A Chain A, The Crystal Structure Of Ornithine Acetyltransferase From
Mycobacterium Tuberculosis (Rv1653) At 1.7 A
pdb|3IT4|C Chain C, The Crystal Structure Of Ornithine Acetyltransferase From
Mycobacterium Tuberculosis (Rv1653) At 1.7 A
pdb|3IT6|A Chain A, The Crystal Structure Of Ornithine Acetyltransferase
Complexed With Ornithine From Mycobacterium Tuberculosis
(Rv1653) At 2.4 A
pdb|3IT6|C Chain C, The Crystal Structure Of Ornithine Acetyltransferase
Complexed With Ornithine From Mycobacterium Tuberculosis
(Rv1653) At 2.4 A
Length = 199
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 98/189 (51%), Gaps = 9/189 (4%)
Query: 68 GVTAAEGFKAAGIYAGVRAKGEKPDXXXXXXXXXXXXXXXXXXXXXXXXPVVYCKKTLDS 127
GVTA GF+AAG+ AG++A G PV++ ++ L +
Sbjct: 15 GVTAPAGFRAAGVAAGIKASGALDLALVFNEGPDYAAAGVFTRNQVKAAPVLWTQQVLTT 74
Query: 128 SKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLL-----KMRSEEVLIESTGVIGQR 182
+ RAV++N+G ANA TG AG+ D A VA L + + EV + STG+IG R
Sbjct: 75 GRL-RAVILNSGGANACTGPAGFADTHATAEAVAAALSDWGTETGAIEVAVCSTGLIGDR 133
Query: 183 IKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKG 242
+ D LL + +V+ + G D AA AI TTD V K VA+ T VGGMAKG
Sbjct: 134 LPMDKLLAGVAHVVHEMHGGLVGGDEAAHAIMTTDNVPKQVALHHHDNWT---VGGMAKG 190
Query: 243 SGMIHPNMA 251
+GM+ P++A
Sbjct: 191 AGMLAPSLA 199
>pdb|1VRA|A Chain A, Crystal Structure Of Arginine Biosynthesis Bifunctional
Protein Argj (10175521) From Bacillus Halodurans At 2.00
A Resolution
Length = 208
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 67 GGVTAAEGFKAAGIYAGVRAKGEKPDXXXXXXXXXXXXXXXXXXXXXXXXPVVYCKKTLD 126
G VT+A+GF A GI+ GV+ K + D P+ ++++
Sbjct: 28 GSVTSAKGFSAVGIHTGVKRK--RKDLGAIVCEVPASSAAVYTLNKVQAAPLKVTQESIA 85
Query: 127 SSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKD 186
+A ++N+G ANA TG G D A + V + STGVIG+ + D
Sbjct: 86 VEGKLQAXIVNSGIANACTGKRGLDDAYTXRAVGAETFHIPEHYVAVTSTGVIGEFLPXD 145
Query: 187 ALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVGGMAKGSGMI 246
+ N + +L ++ EGA + AI TTD V K ++ V G + VGG+AKGSG I
Sbjct: 146 VITNGIRQL--KPEATIEGAHAFNEAILTTDTVEKHTCYQTIVNGKTVTVGGVAKGSGXI 203
Query: 247 HPNMA 251
HPN A
Sbjct: 204 HPNXA 208
>pdb|2VZK|A Chain A, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|C Chain C, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|E Chain E, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2VZK|G Chain G, Structure Of The Acyl-Enzyme Complex Of An N-Terminal
Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|A Chain A, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|C Chain C, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|E Chain E, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
pdb|2V4I|G Chain G, Structure Of A Novel N-Acyl-Enzyme Intermediate Of An N-
Terminal Nucleophile (Ntn) Hydrolase, Oat2
Length = 173
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 118 VVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTG 177
VV C++ + + AR V++ A AN ATG G ++ + VA L + E+LI STG
Sbjct: 47 VVLCREAVADGQ-ARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTG 105
Query: 178 VIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVG 237
VIG++ +++ L L + G D AA AI TTD K V V VGG +
Sbjct: 106 VIGRQYPMESIREHLKTL--EWPAGEGGFDRAARAIMTTDTRPKEVRV--SVGGATLV-- 159
Query: 238 GMAKGSGMIHPNMA 251
G+AKG GM+ P+MA
Sbjct: 160 GIAKGVGMLEPDMA 173
>pdb|2YEP|A Chain A, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|C Chain C, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|E Chain E, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
pdb|2YEP|G Chain G, Structure Of An N-Terminal Nucleophile (Ntn) Hydrolase,
Oat2, In Complex With Glutamate
Length = 180
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 72/134 (53%), Gaps = 7/134 (5%)
Query: 118 VVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTG 177
VV C++ + + AR V++ A AN ATG G ++ + VA L + E+LI STG
Sbjct: 54 VVLCREAVADGQ-ARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTG 112
Query: 178 VIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYIRVG 237
VIG++ +++ L L + G D AA AI TTD K V V VGG +
Sbjct: 113 VIGRQYPMESIREHLKTL--EWPAGEGGFDRAARAIMTTDTRPKEVRV--SVGGATLV-- 166
Query: 238 GMAKGSGMIHPNMA 251
G+AKG GM+ P+MA
Sbjct: 167 GIAKGVGMLEPDMA 180
>pdb|3IT4|B Chain B, The Crystal Structure Of Ornithine Acetyltransferase From
Mycobacterium Tuberculosis (Rv1653) At 1.7 A
pdb|3IT4|D Chain D, The Crystal Structure Of Ornithine Acetyltransferase From
Mycobacterium Tuberculosis (Rv1653) At 1.7 A
pdb|3IT6|B Chain B, The Crystal Structure Of Ornithine Acetyltransferase
Complexed With Ornithine From Mycobacterium Tuberculosis
(Rv1653) At 2.4 A
pdb|3IT6|D Chain D, The Crystal Structure Of Ornithine Acetyltransferase
Complexed With Ornithine From Mycobacterium Tuberculosis
(Rv1653) At 2.4 A
Length = 205
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 86/195 (44%), Gaps = 19/195 (9%)
Query: 279 SFNQITVDGDTSTNDTVXXXXXXXXXXXXXXXVDCNEAKQLQACLDAVMQGLAKSIAWDG 338
+F+++ +DG STNDTV D +EA L+ C D L + D
Sbjct: 28 TFDRLDIDGSCSTNDTVLLLSSGASEIPPAQA-DLDEAV-LRVCDD-----LCAQLQADA 80
Query: 339 EGATCLIEVRVTGANSEAEAAKIXXXXXXXXXXXXXXYGRDPNWGRIAAAAGYAGVSFYQ 398
EG T + V VTGA +E +A +G DPNWGR+ AA G A ++
Sbjct: 81 EGVTKRVTVTVTGAATEDDALVAARQIARDSLVKTALFGSDPNWGRVLAAVGMAPITLDP 140
Query: 399 NKLRILLGDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQA--WGC 456
+++ + + + G P R L A IDI+V G G GQA
Sbjct: 141 DRISVSFNGAAVCVHGVGAPGAREV---DLSDAD-------IDITVDLGVGDGQARIRTT 190
Query: 457 DLSYDYVKINAEYTT 471
DLS+ YV+ N+ Y++
Sbjct: 191 DLSHAYVEENSAYSS 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,524,139
Number of Sequences: 62578
Number of extensions: 401722
Number of successful extensions: 1032
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 14
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)