Query 012099
Match_columns 471
No_of_seqs 186 out of 1101
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05388 argJ bifunctional orn 100.0 2E-161 4E-166 1237.0 45.1 394 68-471 1-395 (395)
2 COG1364 ArgJ N-acetylglutamate 100.0 6E-161 1E-165 1222.1 42.6 400 62-471 5-404 (404)
3 cd02152 OAT Ornithine acetyltr 100.0 2E-160 4E-165 1228.6 44.6 390 72-471 1-390 (390)
4 TIGR00120 ArgJ glutamate N-ace 100.0 3E-160 6E-165 1231.0 45.1 398 66-471 2-404 (404)
5 PF01960 ArgJ: ArgJ family; I 100.0 9E-161 2E-165 1229.6 32.1 388 75-471 1-388 (388)
6 KOG2786 Putative glutamate/orn 100.0 6E-133 1E-137 986.1 31.9 403 62-471 19-431 (431)
7 cd00123 DmpA_OAT DmpA/OAT supe 100.0 2.1E-58 4.5E-63 459.8 22.9 243 72-333 1-284 (286)
8 cd06845 Bcl-2_like Apoptosis r 74.9 4.9 0.00011 36.5 4.6 35 353-393 63-98 (144)
9 cd02253 DmpA L-Aminopeptidase 73.1 7.9 0.00017 40.8 6.2 55 248-303 227-281 (339)
10 COG3191 DmpA L-aminopeptidase/ 72.7 4.8 0.0001 42.5 4.5 232 56-302 8-284 (348)
11 PF00452 Bcl-2: Apoptosis regu 71.4 7.5 0.00016 32.8 4.7 19 375-393 42-61 (101)
12 smart00337 BCL BCL (B-Cell lym 68.9 7.9 0.00017 33.4 4.3 34 354-393 26-60 (100)
13 cd02252 nylC_like nylC-like fa 65.1 11 0.00024 38.4 5.1 205 70-303 2-233 (260)
14 TIGR00865 bcl-2 Apoptosis regu 54.7 18 0.00038 35.9 4.4 28 357-390 99-126 (213)
15 COG2101 SPT15 TATA-box binding 45.8 26 0.00057 34.0 3.9 92 90-192 22-123 (185)
16 PF03576 Peptidase_S58: Peptid 44.6 14 0.0003 38.8 2.0 220 67-304 2-272 (326)
17 PTZ00397 macrophage migration 36.5 49 0.0011 28.8 3.9 30 145-174 70-99 (116)
18 KOG3302 TATA-box binding prote 36.1 29 0.00063 34.2 2.6 22 346-367 78-99 (200)
19 PF04475 DUF555: Protein of un 32.9 56 0.0012 29.1 3.6 26 342-367 70-95 (102)
20 COG0016 PheS Phenylalanyl-tRNA 29.0 18 0.00038 38.2 -0.1 16 242-257 281-296 (335)
21 PRK01964 4-oxalocrotonate taut 27.9 89 0.0019 24.2 3.7 30 145-174 13-42 (64)
22 PRK03903 transaldolase; Provis 27.2 1.2E+02 0.0025 31.3 5.4 46 145-191 154-199 (274)
23 PF14552 Tautomerase_2: Tautom 25.5 59 0.0013 27.4 2.4 28 147-174 43-70 (82)
24 PF00352 TBP: Transcription fa 23.2 76 0.0017 26.4 2.7 22 346-367 59-80 (86)
25 KOG4355 Predicted Fe-S oxidore 22.6 1.1E+02 0.0023 33.6 4.1 56 129-184 186-251 (547)
26 cd04516 TBP_eukaryotes eukaryo 22.0 84 0.0018 30.1 3.0 22 346-367 57-78 (174)
27 PRK01271 4-oxalocrotonate taut 21.2 1.5E+02 0.0033 24.7 4.1 41 146-191 15-55 (76)
28 KOG0964 Structural maintenance 20.6 67 0.0014 38.6 2.4 46 251-296 598-655 (1200)
29 TIGR02830 spore_III_AG stage I 20.5 1.7E+02 0.0036 28.6 4.7 58 107-174 126-183 (186)
30 PF10229 DUF2246: Uncharacteri 20.2 45 0.00098 34.4 0.9 39 233-273 238-278 (278)
No 1
>PRK05388 argJ bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; Validated
Probab=100.00 E-value=1.7e-161 Score=1237.00 Aligned_cols=394 Identities=51% Similarity=0.809 Sum_probs=381.8
Q ss_pred CccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCccccCcH
Q 012099 68 GVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGD 147 (471)
Q Consensus 68 ~v~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~ 147 (471)
+++.|+||+++|++||||+++ |+||+||+|+.||.+|||||+|+|+||||+|||++|+. +++|||||||||||||||+
T Consensus 1 ~~~~p~Gf~~~g~~aGiK~~~-~~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~-~~~rAvvvNSGnANA~TG~ 78 (395)
T PRK05388 1 GVTAPKGFRAAGVAAGIKKSG-RKDLALIVSDGPASAAGVFTTNKFKAAPVLVCREHLAD-GRLRAVVVNSGNANACTGE 78 (395)
T ss_pred CCCCCceEEEEEEEeccccCC-CCCEEEEEeCCCceEEEEeccCceeeccchHHHHHhcc-CCceEEEEcCCcccccccH
Confidence 467899999999999999875 89999999999999999999999999999999999984 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEE
Q 012099 148 AGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVES 227 (471)
Q Consensus 148 ~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~pK~~~~~~ 227 (471)
+|++||++|++++|+.|+|++++|||+||||||+|||||+|+++||++..+|+. ++|++||+||||||||||++++++
T Consensus 79 ~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpm~ki~~~i~~~~~~l~~--~~~~~aA~AImTTDt~pK~~~~~~ 156 (395)
T PRK05388 79 QGLQDARATAEAVAELLGIPAEEVLVASTGVIGEPLPMDKILAGLPAAVAALSE--DGWEDAAEAIMTTDTFPKQAAREV 156 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEeCchhccCcCCHHHHHHhHHHHHHhcCc--ccHHHHHHHHhcCCCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999975 589999999999999999999999
Q ss_pred EECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCCCCcc
Q 012099 228 QVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSR 307 (471)
Q Consensus 228 ~~~g~~v~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~ 307 (471)
+++|++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++|+++
T Consensus 157 ~~~g~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~~v~~SFN~ItVDGDtSTNDtv~llAnG~ag~~~ 236 (395)
T PRK05388 157 EIDGKTVTIGGIAKGAGMIAPNMATMLAFITTDAAISPEVLQALLREAVDKSFNRITVDGDTSTNDTVLLLANGASGNPE 236 (395)
T ss_pred EECCEEEEEEEEEeecccCCCcchhhhhheeeCccCCHHHHHHHHHHHHhhCcCCeeECCCcCHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhhHhh
Q 012099 308 ISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAA 387 (471)
Q Consensus 308 i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~DpNWGRIla 387 (471)
| + ++++++.|+++|++||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||++
T Consensus 237 i-~-~~~~~~~f~~aL~~v~~~LAk~IvrDGEGATK~i~v~V~gA~s~~~A~~iA~~Ia~S~LVKTAifG~DpNWGRIl~ 314 (395)
T PRK05388 237 I-G-DTPDLAAFEEALTEVCQDLAKQIVRDGEGATKLIEVTVTGAASEEDARKIAKAIANSPLVKTAIFGEDPNWGRILA 314 (395)
T ss_pred C-C-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEeCCCCHHHHHHHHHHHcCChHHHHhHhccCCCHHHHHH
Confidence 8 3 4556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCccccccceeEEeCCEEEEcCCCCCCCC-HHHHHHHhhhcCCCCceEEEEEEeCCCCeeEEEEeccCCccccccc
Q 012099 388 AAGYAGVSFYQNKLRILLGDSLLMDGGQPLPFD-RAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYDYVKIN 466 (471)
Q Consensus 388 AiG~SGv~fDpekv~I~lgdV~V~~~G~pl~yD-e~ka~~~l~~~~~~~~ei~I~vdLg~G~~~a~~w~cDLs~eYV~IN 466 (471)
|+||+|++|||++++|+|++++|+++|.+++|+ |++++++|++ ++||.|+||||.|++++++||||||||||+||
T Consensus 315 AiG~sg~~~d~~~v~i~~~~v~v~~~G~~~~~~~e~~~~~~m~~----~~ei~I~vdL~~G~~~~t~w~cDLt~~YV~IN 390 (395)
T PRK05388 315 AVGYSGADFDPDRLDIYLGGVLVAKNGGPAPFYREEDASAYMKQ----EDEITIRVDLGLGDGSATAWTCDLSYDYVKIN 390 (395)
T ss_pred HhcCCCCccchhheEEEECCEEEEeCCCCCCCCcHHHHHHHhCC----CCEEEEEEEeCCCCceEEEEcccCCccceeeC
Confidence 999999999999999999999999999999988 8889999983 38999999999999999999999999999999
Q ss_pred CccCC
Q 012099 467 AEYTT 471 (471)
Q Consensus 467 a~Y~T 471 (471)
|+|||
T Consensus 391 a~Yrt 395 (395)
T PRK05388 391 ADYRT 395 (395)
T ss_pred CcccC
Confidence 99997
No 2
>COG1364 ArgJ N-acetylglutamate synthase (N-acetylornithine aminotransferase) [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-161 Score=1222.14 Aligned_cols=400 Identities=51% Similarity=0.808 Sum_probs=390.6
Q ss_pred ceecCCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCc
Q 012099 62 WKQIPGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQA 141 (471)
Q Consensus 62 ~~~~~g~v~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnA 141 (471)
|..+.++++.|+||+++|+++|||+++ |+||+||+|++||++|||||+|+|+||||+|||++|+. +++||||+|||||
T Consensus 5 ~~~~~~~i~~p~Gf~~~g~~aGiK~~g-~~Dl~li~se~~~~aAgVFT~n~~~AAPV~~~~~~l~~-~~~rAiVvNSGnA 82 (404)
T COG1364 5 MPKIAGGITAPKGFLAAGIAAGIKASG-KPDLGLIVSERPASAAGVFTTNKVKAAPVDVSRENLAD-GKLRAIVVNSGNA 82 (404)
T ss_pred cccccCCCCCCccEEEeeeeeccccCC-CCCEEEEEecCCceeEEEEecccccccceehhhHhhcc-CceEEEEEccCCc
Confidence 667789999999999999999999986 89999999999999999999999999999999999996 5999999999999
Q ss_pred cccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCcc
Q 012099 142 NAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSK 221 (471)
Q Consensus 142 NA~TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~pK 221 (471)
|||||+||++||++|++++|+.|+|++++|+|+||||||+|||||||+.+|+++.++|.. +++|.+||+|||||||+||
T Consensus 83 Na~TG~~G~~dA~~~a~~~A~~l~~~~~~V~vaSTGVIG~~Lpmdki~~gi~~~~~~l~~-~~~~~~aa~AImTTDT~pK 161 (404)
T COG1364 83 NACTGEQGLKDAREMAEAVAEELGIEEEEVLVASTGVIGERLPMDKILAGIEKLVSDLGS-EDGWLEAAEAIMTTDTVPK 161 (404)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcceEEEeeccccCCcCCHHHHHHhHHHHHhhccC-cccHHHHHhhhhccCCcce
Confidence 999999999999999999999999999999999999999999999999999999999975 5799999999999999999
Q ss_pred EEEEEEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccC
Q 012099 222 SVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASG 301 (471)
Q Consensus 222 ~~~~~~~~~g~~v~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG 301 (471)
.+++++.++| +|||+||||||||||||||||||||+|||+|++..||++|++++++|||||||||||||||||++||||
T Consensus 162 ~~~~~~~~~~-~vti~GiAKGsGMI~PnMATML~Fi~TDA~i~~~~Lq~~L~~~~~~TFN~itVDGDTSTNDtv~llAnG 240 (404)
T COG1364 162 QAAVEAEIGG-TVTIGGIAKGSGMIHPNMATMLAFITTDAAIEPAALQKALRRAVDKTFNMITVDGDTSTNDTVLLLANG 240 (404)
T ss_pred eEEEEeccCc-eEEEEEEecccccCCcCHHHHHHHhhcCCcCCHHHHHHHHHHHHhccCceEEEcCCCCchhhHhhhhcC
Confidence 9999999997 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCC
Q 012099 302 LSRSSRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPN 381 (471)
Q Consensus 302 ~a~~~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~DpN 381 (471)
++|+++|++.. ++|++|+++|.+||++||||||||||||||||||+|+||+|++|||.|||+|++||||||||||+|||
T Consensus 241 ~~g~~~i~~~~-~~~~~f~~al~~v~~~LAk~IvrDGEGATK~ieV~V~GA~~~~~A~~iA~~Ia~S~LVKTAvfG~DpN 319 (404)
T COG1364 241 ASGNPEITEES-PDLAEFKEALTEVCQDLAKQIVRDGEGATKLIEVTVTGAASEEDARVIARAIANSPLVKTAVFGSDPN 319 (404)
T ss_pred ccCCccccccC-ccHHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEEeCCCCHHHHHHHHHHHhcChhhhhhhhcCCCc
Confidence 99999998755 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhccCCccccccceeEEeCCEEEEcCCCCCCCCHHHHHHHhhhcCCCCceEEEEEEeCCCCeeEEEEeccCCcc
Q 012099 382 WGRIAAAAGYAGVSFYQNKLRILLGDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYD 461 (471)
Q Consensus 382 WGRIlaAiG~SGv~fDpekv~I~lgdV~V~~~G~pl~yDe~ka~~~l~~~~~~~~ei~I~vdLg~G~~~a~~w~cDLs~e 461 (471)
||||+||+||+|++|||++++|+|+++.++.+|+|++++++++++||+ ++||.|+||||.|++++|+||||||||
T Consensus 320 WGRIi~AvG~sg~~~d~~~i~i~~~~~~~~~~G~~~~~~~~~~~~~l~-----~~ei~I~VdLg~G~~~at~wgCDLt~d 394 (404)
T COG1364 320 WGRILAAVGYSGAEVDPDKISISFGGIVVADDGEPLPFYEEAASAYLS-----QDEITIRVDLGVGDGAATAWGCDLTYD 394 (404)
T ss_pred HHHHHHhccccccccChhhEEEEECCEEEEeCCCCChhhHHHHHhhhc-----cCcEEEEEEeccCCcceEEEeccCchh
Confidence 999999999999999999999999999999999999988999999999 589999999999999999999999999
Q ss_pred cccccCccCC
Q 012099 462 YVKINAEYTT 471 (471)
Q Consensus 462 YV~INa~Y~T 471 (471)
||+||++|||
T Consensus 395 YV~INa~Yrt 404 (404)
T COG1364 395 YVRINADYRT 404 (404)
T ss_pred hEEeeceecC
Confidence 9999999997
No 3
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.
Probab=100.00 E-value=2e-160 Score=1228.58 Aligned_cols=390 Identities=51% Similarity=0.826 Sum_probs=380.5
Q ss_pred cCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHH
Q 012099 72 AEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQ 151 (471)
Q Consensus 72 p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~ 151 (471)
|+||+++|++||||+++ |+||+||+|+.||.+|||||+|+|+||||+|||++|+. +++|||||||||||||||++|++
T Consensus 1 p~Gf~~~g~~aGik~~~-~~Dlali~s~~p~~~AgvFT~N~~~AAPV~~~~~~l~~-~~~ravvvNSGnANA~TG~~G~~ 78 (390)
T cd02152 1 PKGFRAAGVAAGIKKSG-RKDLALIYSDVPATAAGVFTTNKFKAAPVLVSREHLAD-GKARAVVVNSGNANACTGEQGLE 78 (390)
T ss_pred CCeEEEEEEEeecccCC-CCCEEEEEeCCCccEEEEEccCCeeeccchHHHHhhcc-CCceEEEEcCCccccccCHHHHH
Confidence 79999999999999875 89999999999999999999999999999999999985 68999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEEEECC
Q 012099 152 DVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGG 231 (471)
Q Consensus 152 da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~pK~~~~~~~~~g 231 (471)
||++|++++|+.|+|++++|||+||||||+|||||+|+++||++..+|+. ++|++||+||||||||||.++++++++|
T Consensus 79 da~~~~~~~A~~l~i~~~~VlvaSTGVIG~~Lp~~~i~~gi~~~~~~l~~--~~~~~aA~AImTTDt~pK~~~~~~~~~g 156 (390)
T cd02152 79 DAREMAELVAELLGIPEEEVLVASTGVIGEPLPMDKIRAGIPELVASLSE--DGWEAAARAIMTTDTFPKEAAVEVEIGG 156 (390)
T ss_pred HHHHHHHHHHHHhCCCcccEEEeCchhccCCCCHHHHHHhHHHHHHHhCc--ccHHHHHHHHhcCCCCceEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999965 6899999999999999999999999999
Q ss_pred eEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCCCCccccCC
Q 012099 232 TYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSV 311 (471)
Q Consensus 232 ~~v~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~ 311 (471)
++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++|+++|.+
T Consensus 157 ~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtv~~lAnG~ag~~~i~~- 235 (390)
T cd02152 157 KTVTIGGIAKGSGMIHPNMATMLGFITTDAAISPELLQDALRRAVDRSFNRITVDGDTSTNDTVLLLANGAAGNPPISE- 235 (390)
T ss_pred EEEEEEEEEcccccCCcchhhhhhheecCCcCCHHHHHHHHHHHHhhCCCCeeECCCcCHHHHHHHHhCCCCCCCCcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhhHhhhhcc
Q 012099 312 DCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAGY 391 (471)
Q Consensus 312 ~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~DpNWGRIlaAiG~ 391 (471)
+++++..|+++|.+||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||++|+||
T Consensus 236 ~~~~~~~f~~aL~~v~~~LA~~IvrDGEGATK~i~v~V~gA~s~~~A~~vA~sIa~S~LVKTAi~G~DpNWGRIlaAiG~ 315 (390)
T cd02152 236 EDPDLEEFEEALTEVCLDLAKQIVRDGEGATKLIEVTVTGAASEEDARKVARAIANSPLVKTAIFGEDPNWGRILAAVGY 315 (390)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHccCCCceEEEEEEeCCCCHHHHHHHHHHHcCChHHHHHHhccCCCHHHHHhccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccceeEEeCCEEEEcCCCCCCCCHHHHHHHhhhcCCCCceEEEEEEeCCCCeeEEEEeccCCcccccccCccCC
Q 012099 392 AGVSFYQNKLRILLGDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYDYVKINAEYTT 471 (471)
Q Consensus 392 SGv~fDpekv~I~lgdV~V~~~G~pl~yDe~ka~~~l~~~~~~~~ei~I~vdLg~G~~~a~~w~cDLs~eYV~INa~Y~T 471 (471)
+|++|||++++|+|++++|+++|.+.+|+|++++++|+ ++||.|+||||.|++++++||||||||||+||++|||
T Consensus 316 sg~~~d~~~v~i~~~~v~v~~~G~~~~~~e~~~~~~m~-----~~ei~I~vdL~~G~~~~t~w~cDLt~~YV~INa~Yrt 390 (390)
T cd02152 316 SGVEFDPERVSISLGGVLVVENGEPLDYDEAAASAVMK-----EDEITITVDLGRGDGSATVWGCDLTYDYVKINADYRT 390 (390)
T ss_pred cCCCcChhhEEEEECCEEEEeCCCCCCCCHHHHHHHhc-----CCeEEEEEEeCCCCceEEEEcccCCccceeECCcccC
Confidence 99999999999999999999999999999999999999 5899999999999999999999999999999999997
No 4
>TIGR00120 ArgJ glutamate N-acetyltransferase/amino-acid acetyltransferase. This enzyme can acetylate Glu to N-acetyl-Glu by deacetylating N-2-acetyl-ornithine into ornithine; the two halves of this reaction represent the first and fifth steps in the synthesis of Arg (or citrulline) from Glu by way of ornithine (EC 2.3.1.35). In Bacillus stearothermophilus, but not in Thermus thermophilus HB27, the enzyme is bifunctional and can also use acetyl-CoA to acetylate Glu (EC 2.3.1.1).
Probab=100.00 E-value=2.8e-160 Score=1230.99 Aligned_cols=398 Identities=50% Similarity=0.790 Sum_probs=384.3
Q ss_pred CCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCccccC
Q 012099 66 PGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAAT 145 (471)
Q Consensus 66 ~g~v~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~T 145 (471)
+++++.|+||+++|++||||+ |+||+||+|+.||.+|||||+|+|+||||+|||++|+.++++||||||||||||||
T Consensus 2 ~~~~~~p~GF~~~g~~aGiK~---r~Dlali~s~~pa~~AgvFT~N~~~AAPV~~~~~~l~~~~~~rAvvvNSGnANA~T 78 (404)
T TIGR00120 2 PGGVTAPKGFLAAGIKEGKKK---SYDLGLIISERPATAAAVFTTNKVRAAPVKVSEEVLKDGRSIRAIVVNSGNANAFT 78 (404)
T ss_pred CCCCcCCCeEEEEEEecCCcc---CCCEEEEEeCCCccEEEEecCCCceeccchHHHHHhccCCceEEEEEcCCcccccc
Confidence 578999999999999999996 68999999999999999999999999999999999975338999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEE
Q 012099 146 GDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAV 225 (471)
Q Consensus 146 G~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~pK~~~~ 225 (471)
|++|++||++|++++|+.|+|++++|||+||||||+|||||+|+++||.+..+|+.+.++|++||+||||||||||.+++
T Consensus 79 G~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lp~~~i~~~i~~~~~~l~~~~~~~~~aA~AImTTDt~pK~~~~ 158 (404)
T TIGR00120 79 GEQGMKDAREMARLVAELLGIEEESVLVASTGVIGRRLDMEKIRTGINKLYGELKNSSNSSDNFAKAIMTTDTFPKEVAV 158 (404)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcccEEEeCchhccCcCCHHHHHHhHHHHHHhcCccccCHHHHHHHHhcCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999986546899999999999999999999
Q ss_pred EEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCCCC
Q 012099 226 ESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRS 305 (471)
Q Consensus 226 ~~~~~g~~v~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~ 305 (471)
+++++|++|+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++|+
T Consensus 159 ~~~~~g~~v~i~GiaKGsGMI~PnMATML~fi~TDA~i~~~~Lq~~L~~av~~SFN~IsVDGDtSTNDtv~~lAnG~ag~ 238 (404)
T TIGR00120 159 EFELPGEKVRIGGVAKGAGMIAPNMATMLGFITTDAAIESKALQKMLRRATDKSFNQITVDGDTSTNDTVLVLANGASRT 238 (404)
T ss_pred EEEECCeEEEEEEEEcccccCCCchhhhhhheeeCCCCCHHHHHHHHHHHHHhCCCCeeeCCCcCHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhhH
Q 012099 306 SRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRI 385 (471)
Q Consensus 306 ~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~DpNWGRI 385 (471)
++|.+ +++++..|+++|++||++|||+||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||
T Consensus 239 ~~i~~-~~~~~~~f~~aL~~v~~~LAk~IvrDGEGATKliev~V~gA~~~~~A~~iA~sIa~S~LVKTAi~G~DpNWGRI 317 (404)
T TIGR00120 239 KEITE-DSPDFEVFEEALTAVCQELAKMIARDGEGATKFFEVQVKGAKNDEDAKIIARAIAGSSLVKTAVFGQDPNWGRI 317 (404)
T ss_pred CccCC-CCccHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEEeCCCCHHHHHHHHHHhcCCHhHHHHHcCCCCCHHHH
Confidence 88876 45578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCccccccceeEEeCC----EEEEcCCCCCCCCHH-HHHHHhhhcCCCCceEEEEEEeCCCCeeEEEEeccCCc
Q 012099 386 AAAAGYAGVSFYQNKLRILLGD----SLLMDGGQPLPFDRA-AAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSY 460 (471)
Q Consensus 386 laAiG~SGv~fDpekv~I~lgd----V~V~~~G~pl~yDe~-ka~~~l~~~~~~~~ei~I~vdLg~G~~~a~~w~cDLs~ 460 (471)
++|+||+|++|||++++|+|++ ++|+++|++..|+++ +++++|+. ++||.|+||||.|++++++|||||||
T Consensus 318 ~~AiG~sg~~~d~~~v~i~~g~~~~~v~v~~~G~~~~~~e~~~~~~~l~~----~~ei~I~vdLg~G~~~~~~w~cDLt~ 393 (404)
T TIGR00120 318 IAAAGYSGADVDPENVSVILGDNSEEVVLVDNGVPLEFEETSRASEIMLE----SDEIEIVVDLGTGDGAGTAWGCDLSY 393 (404)
T ss_pred HHHhcccCCccchhhEEEEECCccceEEEEeCCCCCCCCHHHHHHHHhcC----CCEEEEEEEeCCCCceEEEEcccCCc
Confidence 9999999999999999999999 999999999999987 88999992 37999999999999999999999999
Q ss_pred ccccccCccCC
Q 012099 461 DYVKINAEYTT 471 (471)
Q Consensus 461 eYV~INa~Y~T 471 (471)
|||+||++|||
T Consensus 394 eYV~INa~Yrt 404 (404)
T TIGR00120 394 DYVRINAEYTT 404 (404)
T ss_pred cceeECCcccC
Confidence 99999999997
No 5
>PF01960 ArgJ: ArgJ family; InterPro: IPR002813 ArgJ is a bifunctional protein that catalyses the first 2.3.1.35 from EC and fifth steps 2.3.1.1 from EC in arginine biosynthesis []. The structure has been determined for glutamate N-acetyltransferase 2 (ornithine acetyltransferase; 2.3.1.35 from EC), an ArgJ-like protein from Streptomyces clavuligerus [].; GO: 0004358 glutamate N-acetyltransferase activity, 0006526 arginine biosynthetic process; PDB: 1VRA_A 1VZ7_A 1VZ8_D 2VZK_H 2V4I_A 2YEP_E 1VZ6_A 3IT4_A 3IT6_D.
Probab=100.00 E-value=8.6e-161 Score=1229.61 Aligned_cols=388 Identities=52% Similarity=0.818 Sum_probs=335.1
Q ss_pred eEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHH
Q 012099 75 FKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVV 154 (471)
Q Consensus 75 F~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~da~ 154 (471)
|+++|++||||+++ |+||+||+||+||.+|||||+|+|+||||+|||++|..++++|||||||||||||||++|++||+
T Consensus 1 F~a~gv~aGiK~~~-~~Dlali~s~~p~~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~da~ 79 (388)
T PF01960_consen 1 FRAAGVAAGIKKSG-RLDLALIVSDVPASAAGVFTTNRVKAAPVLVSREHLAKGGRIRAVVVNSGNANACTGEQGLEDAE 79 (388)
T ss_dssp EEEEEE--SSSTTS-SS-EEEEEECSEEEEEEEEE--SS--HHHHHHHHHHHCCSBEEEEEEEESE---S-HHHHHHHHH
T ss_pred CEEEEEEEeeecCC-CCCEEEEEeCCCceEEEEEecCccccccchHHHHhhccCCceEEEEEccCCCCCCCcHHHHHHHH
Confidence 99999999999876 89999999999999999999999999999999999944579999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCCccEEEEEEEECCeEE
Q 012099 155 DCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLVSKSVAVESQVGGTYI 234 (471)
Q Consensus 155 ~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~pK~~~~~~~~~g~~v 234 (471)
+|++++|+.|+|++++|||+||||||+|||||||+++||++.++|+. ++|++||+||||||||||+++++++++|++|
T Consensus 80 ~~~~~~A~~l~~~~~~VlvaSTGVIG~~lp~~~i~~~i~~l~~~L~~--~~~~~aA~AImTTDt~pK~~~~~~~~~g~~v 157 (388)
T PF01960_consen 80 AMAEAVAEALGIPPEEVLVASTGVIGEPLPMDKIRAGIPALAESLSS--DGGEDAARAIMTTDTFPKEAAVEVEIGGKTV 157 (388)
T ss_dssp HHHHHHHHHHTCHGGGEEEEEESESS----HHHHHHHHHHHHHCSSS--CHHHHHHHHT-SS-SS-EEEEEEEEETTECE
T ss_pred HHHHHHHHHhCCCcccEEEeccccccCcCCHHHHHHhHHHHHHHhCC--CcHHHHHHHHcCCCCCCeEEEEEEEEcCCEE
Confidence 99999999999999999999999999999999999999999999976 4999999999999999999999999999999
Q ss_pred EEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCCCCccccCCCch
Q 012099 235 RVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSVDCN 314 (471)
Q Consensus 235 ~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~~~~ 314 (471)
+|+||||||||||||||||||||+|||+|+++.||++|+++|++|||||||||||||||||++||||++|+++|.+ +++
T Consensus 158 ~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~IsVDGDtSTNDtv~llAnG~sg~~~i~~-~~~ 236 (388)
T PF01960_consen 158 TIGGIAKGSGMIHPNMATMLAFITTDAAISPDALQKALRRAVDRSFNRISVDGDTSTNDTVLLLANGASGNVPITE-GDP 236 (388)
T ss_dssp EEEEEEE-SSS----EE--EEEEEEECB--HHHHHHHHHHHHHHTGGGBESSS---SS-EEEEEEEETTEBS-H-T-TST
T ss_pred EEEEEECCccccCCchhhhheeeeeCCCCCHHHHHHHHHHHHHhccCCceecCCCCchhheeeeeCcCCCCCCCCC-CCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877 788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCCCChhhHhhhhccCCc
Q 012099 315 EAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAGYAGV 394 (471)
Q Consensus 315 ~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~DpNWGRIlaAiG~SGv 394 (471)
+++.|++||++||++||||||||||||||||||+|+||+|++||+++||+|++||||||||||+|||||||++|+||+|+
T Consensus 237 ~~~~F~~aL~~v~~~LA~~Iv~DGEGAtKli~v~V~GA~s~~~A~~iAraIa~S~LVKtAi~G~DpNWGRI~aA~G~sg~ 316 (388)
T PF01960_consen 237 DYEEFQEALTEVCQDLAKQIVRDGEGATKLIEVTVTGARSEEDARKIARAIANSPLVKTAIFGEDPNWGRILAAVGYSGV 316 (388)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSTT-SSEEEEEEEEESSHHHHHHHHHHHHT-HHHHHHHHTT---HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCCCHHHHHHHHHHHhcCHHHHHHHhcCCCCHHHHhhhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEEeCCEEEEcCCCCCCCCHHHHHHHhhhcCCCCceEEEEEEeCCCCeeEEEEeccCCcccccccCccCC
Q 012099 395 SFYQNKLRILLGDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSGQAWGCDLSYDYVKINAEYTT 471 (471)
Q Consensus 395 ~fDpekv~I~lgdV~V~~~G~pl~yDe~ka~~~l~~~~~~~~ei~I~vdLg~G~~~a~~w~cDLs~eYV~INa~Y~T 471 (471)
+|||++++|+|++++|+++|++.+|+|++++++|+ ++||+|+||||.|++++++||||||||||+||++|||
T Consensus 317 ~~d~~~v~i~~~~~~v~~~G~~~~~~e~~~~~~m~-----~~ev~I~vdLg~G~~~at~wtcDLt~~YV~INa~YrT 388 (388)
T PF01960_consen 317 DFDPEKVDIYFGGVPVFENGQPVPFDEDAAKAYMK-----QPEVTITVDLGQGDGSATVWTCDLTYEYVKINADYRT 388 (388)
T ss_dssp TS-TTC-EEEETTEEEEETTEESTCCHHHHHHHHC-----SSEEEEEEE-SSSSEEEEEEEE---HHHHHHHHCS--
T ss_pred CcccceeEEEECCEEEEeCCCCCcCCHHHHHhhcC-----CCeEEEEEEECCCCeeEEEEeCCCCcchheeCCcccC
Confidence 99999999999999999999999999999999999 5899999999999999999999999999999999997
No 6
>KOG2786 consensus Putative glutamate/ornithine acetyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-133 Score=986.07 Aligned_cols=403 Identities=60% Similarity=0.862 Sum_probs=385.5
Q ss_pred ceecCCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCC--CCCeeEEEEecC
Q 012099 62 WKQIPGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDS--SKTARAVLINAG 139 (471)
Q Consensus 62 ~~~~~g~v~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~--~~~~ravvvNSG 139 (471)
-++++.+-+.|+||...++++|+|+.| |+||+||.+++||++|+|||+|.|+||||++||+.|+. +..+|+||+|||
T Consensus 19 t~~i~ksgt~pqgf~l~~~asGvkanG-kkDLa~v~~srp~~AAaVFTtN~f~AAPV~~skkvLet~~gK~i~avviNsG 97 (431)
T KOG2786|consen 19 TKFISKSGTYPQGFSLNGMASGVKANG-KKDLALVTCSRPAVAAAVFTTNVFAAAPVVYSKKVLETSGGKTIRAVVINSG 97 (431)
T ss_pred ceecccCCCCCCceeeccchhhhhhcC-ccceEEEecCCcchhheeeecccccccceehhhhHHhccCCCceeEEEEcCC
Confidence 456667889999999999999999987 78999999999999999999999999999999999975 356999999999
Q ss_pred CccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhhHHHHHhhcCCCCccHHHHHHHHcCCCCC
Q 012099 140 QANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNSLPKLVNSLSSSTEGADSAAVAITTTDLV 219 (471)
Q Consensus 140 nANA~TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~i~~~~~~L~~~~~~~~~aA~AImTTDt~ 219 (471)
|||+.||+.||+|++.|...++..+..+++++||+|||||||||.||||..+||+++++++++.+.|+.+|+||+|||||
T Consensus 98 cANavTGd~G~~Daq~~v~~i~t~~~~~~~s~LvmSTGVIGQRlk~dki~~gl~~~ve~~gs~~e~w~~aA~aIcTTDtf 177 (431)
T KOG2786|consen 98 CANAVTGDAGYQDAQDCVGSIATLLKVKPESVLVMSTGVIGQRLKKDKILHGLPTLVESRGSSVEEWDSAAVAICTTDTF 177 (431)
T ss_pred cccccccccchhHHHHHHHHhhHhhccCCCceEEEecchhhhHHhHHHHhhhhHHHHHhccccHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEECCeEEEEeEEeccCCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhc
Q 012099 220 SKSVAVESQVGGTYIRVGGMAKGSGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALA 299 (471)
Q Consensus 220 pK~~~~~~~~~g~~v~i~GiAKGsGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllA 299 (471)
||.++++++++|..+||+|||||+|||||||||||+||+||++|+.+.||++|+.++++||||||||||||||||+..||
T Consensus 178 pKlV~~e~~v~G~~yrv~GmAKGaGMI~PNmATlLG~ivTDapiesda~rkml~~AvnrSFN~IsvDGDtSTNDTi~~LA 257 (431)
T KOG2786|consen 178 PKLVAVESQVGGIKYRVGGMAKGAGMIHPNMATLLGVIVTDAPIESDAWRKMLKVAVNRSFNQISVDGDTSTNDTIIALA 257 (431)
T ss_pred chhhheeeecccEEEEeecccccCcccCccHHhhhheeeccCcccHHHHHHHHHHHhccccceEEecCCCCccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCchhHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCHHHHHHHHHHhhcchhhhhhhhCCC
Q 012099 300 SGLSRSSRISSVDCNEAKQLQACLDAVMQGLAKSIAWDGEGATCLIEVRVTGANSEAEAAKIARSVASSSLVKAAVYGRD 379 (471)
Q Consensus 300 nG~a~~~~i~~~~~~~~~~F~~aL~~v~~~LAk~Iv~DGEGATKli~v~V~GA~s~~~A~~iArsIa~S~LVKtAi~G~D 379 (471)
||++|.++|++ +++++++.+.++++++|.|||.||||||||||||||+|+||.+++||++|||+|.||.|||||+||+|
T Consensus 258 nGa~g~~eIs~-~sk~~~q~~~~vt~~aQ~LAklvvrDGEGaTkfvtV~Vkga~~e~dAa~iA~sisnS~LVKtA~yG~D 336 (431)
T KOG2786|consen 258 NGASGSPEISS-NSKEAAQLQACVTAVAQGLAKLVVRDGEGATKFVTVTVKGAETEADAAKIARSISNSSLVKTAVYGRD 336 (431)
T ss_pred ccCCCCccccc-cCHHHHHHHHHHHHHHHHHHHHheecCCCceEEEEEEEccccchHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 99999999987 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHhhhhccCCc--cccccceeEEe------CCEEEEcCCCCCCCCHHHHHHHhhhcCCCCceEEEEEEeCCCCeeE
Q 012099 380 PNWGRIAAAAGYAGV--SFYQNKLRILL------GDSLLMDGGQPLPFDRAAAGNYLRKAGETRGTVFIDISVGDGPGSG 451 (471)
Q Consensus 380 pNWGRIlaAiG~SGv--~fDpekv~I~l------gdV~V~~~G~pl~yDe~ka~~~l~~~~~~~~ei~I~vdLg~G~~~a 451 (471)
||||||+||+||+|+ .+|+.++++.| ...++..||.|...||.++.++|. ..+++|.|||+.|+...
T Consensus 337 aNWGRIlcA~GYag~~~~~d~~kisvsFi~~d~~ePLkl~~nG~pq~vdetrasEil~-----~~~l~vsVdLg~gp~a~ 411 (431)
T KOG2786|consen 337 ANWGRILCAAGYAGVSFQMDKLKISVSFILMDSGEPLKLDRNGAPQNVDETRASEILG-----TVTLDVSVDLGNGPYAI 411 (431)
T ss_pred CchhHhhhhhcccccccccCcccceEEEEEcCCCCcceeccCCCccccchhhhhhhcc-----cceEEEEEecCCCCcee
Confidence 999999999999999 56777777766 226777888888888999999999 48999999999999999
Q ss_pred EEEeccCCcccccccCccCC
Q 012099 452 QAWGCDLSYDYVKINAEYTT 471 (471)
Q Consensus 452 ~~w~cDLs~eYV~INa~Y~T 471 (471)
+.|+||||||||.||+||||
T Consensus 412 ~nwtcdlSyeyV~ingDyRs 431 (431)
T KOG2786|consen 412 VNWTCDLSYEYVMINGDYRS 431 (431)
T ss_pred EeeEEEeeeeEEEEecccCC
Confidence 99999999999999999997
No 7
>cd00123 DmpA_OAT DmpA/OAT superfamily; composed of L-aminopeptidase D-amidase/D-esterase (DmpA), ornithine acetyltransferase (OAT) and similar proteins. DmpA is an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. The superfamily also contains an enzyme, endo-type 6-aminohexanoate-oligomer hydrolase, that have been shown to be involved in nylon degradation. Proteins in this superfamily undergo autocatalytic c
Probab=100.00 E-value=2.1e-58 Score=459.79 Aligned_cols=243 Identities=24% Similarity=0.334 Sum_probs=222.5
Q ss_pred cCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCee-EEEEecCCccccCcHHHH
Q 012099 72 AEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTAR-AVLINAGQANAATGDAGY 150 (471)
Q Consensus 72 p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~r-avvvNSGnANA~TG~~G~ 150 (471)
|+||++++.++|+|+++ |.||+||+++.||.+|++||+|+++|+ +||++++. +++| +||+|||| +|+
T Consensus 1 ~~G~~vg~~~~g~~~~~-~tgvtvI~~~~~~~aa~~~t~~~~~a~---~~r~~~~~-g~~~~aIvlnsG~-------~g~ 68 (286)
T cd00123 1 PRGVVVGTAPVGEADDG-RDGFTVIASTAPATVSVVFTRGRFAGP---LCREAVAG-GQFRHGVVVLARN-------EGE 68 (286)
T ss_pred CCcEEEEEEEeccCCCC-CCCEEEEEeCCCcEEEEEEcCCCcccc---ChHHHhcC-CCceeEEEEcCCC-------hhH
Confidence 58999999999999765 799999999999999999999999665 89999975 6788 99999999 999
Q ss_pred HHHHHHHHHHHHHhCCC------CCcEEEeccccCCccc-ChHHHHhhHHHHHhhcCCCCccHHH------HHHHHcCCC
Q 012099 151 QDVVDCANTVAMLLKMR------SEEVLIESTGVIGQRI-KKDALLNSLPKLVNSLSSSTEGADS------AAVAITTTD 217 (471)
Q Consensus 151 ~da~~~~~~~A~~l~~~------~~~Vlv~STGVIG~~L-pmdki~~~i~~~~~~L~~~~~~~~~------aA~AImTTD 217 (471)
.||++++..++++++++ .++|+++|||+||+++ ||+++++.++++.++++. ++|.+ +|.+|||||
T Consensus 69 ~da~~~~~~~a~~~~~~~~~~~~~~~v~vastgdig~~~~~~~~~~~~~~~A~~~a~~--~~~~~G~~gag~a~ai~ttd 146 (286)
T cd00123 69 ENAREVREAVARARGLPRTGFAEEGEXLIASTYDIGRQYTPXESIRAHLRTALWPAGE--GGFDRGRASAGAARAIXTTD 146 (286)
T ss_pred HHHHHHHHHHHHHcCCCccCCccccccceEEEEEecCCCCCcccHHHHHHHHHHhccC--CChhccCccHHHHHHHhhcC
Confidence 99999999999999998 8999999999999999 999999999999999965 35666 999999999
Q ss_pred CCccEEEEEEEECCeEEEEeEEeccCCcCC-----------------------CcccchhhhhccCCCCCHHHHHHHHHH
Q 012099 218 LVSKSVAVESQVGGTYIRVGGMAKGSGMIH-----------------------PNMATMLGVVTTDASVDSDVWRKMVKV 274 (471)
Q Consensus 218 t~pK~~~~~~~~~g~~v~i~GiAKGsGMI~-----------------------PnMATML~fi~TDA~i~~~~L~~~L~~ 274 (471)
++||.+++++ + .++|+||+||+|||| |||+|||+||+|||+|++..||++|+
T Consensus 147 ~g~k~as~~~--~--~~tIggi~kgngmi~~~~~~~~~~~g~~~~~~~~~~~~p~maTmL~~i~TDA~l~~~~l~r~~~- 221 (286)
T cd00123 147 TGPGEARRSV--G--GATIVAIVKGNGXLEIVDRAGTVVRGQEAFAEQVPPVTPDXATLITFFATDARLDPAELDRLAR- 221 (286)
T ss_pred CCccceEEEE--C--CEEEEEEEEeccccccccccccccccccccccccCCCCCCCccEEEEEEeCCcCCHHHHHHHHH-
Confidence 9999998875 3 499999999999999 99999999999999999999999999
Q ss_pred HHhcccCceeeCCCCCchhhhhhhccCCCCCccccCC----CchhHHHHHHHHHHHHHHHHHH
Q 012099 275 AVNRSFNQITVDGDTSTNDTVIALASGLSRSSRISSV----DCNEAKQLQACLDAVMQGLAKS 333 (471)
Q Consensus 275 av~~SFN~ItVDGDtSTNDtvlllAnG~a~~~~i~~~----~~~~~~~F~~aL~~v~~~LAk~ 333 (471)
.+++|||||+|||||||||||++||||.+++...... .+.++..|+++|.++|++|++.
T Consensus 222 ~a~~~fnri~vdg~~stgDtv~~lAtg~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~~~l~~~ 284 (286)
T cd00123 222 VXDRTFNRVSIDTDTSTGDTAVAFATGLAGLPTTPGSSRGRLEVDAGEFEEAAHTAALAAVKD 284 (286)
T ss_pred hhhcccceeeecCCCCCCCEEEEEccCCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999986432211 1336889999999999999985
No 8
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=74.92 E-value=4.9 Score=36.46 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhhcchhhhhhhhCC-CCChhhHhhhhccCC
Q 012099 353 NSEAEAAKIARSVASSSLVKAAVYGR-DPNWGRIAAAAGYAG 393 (471)
Q Consensus 353 ~s~~~A~~iArsIa~S~LVKtAi~G~-DpNWGRIlaAiG~SG 393 (471)
.+++.|...=..|++. +|.. .+|||||++...-++
T Consensus 63 ~~~~~~~~~f~~v~~~------lf~dg~inWGRIval~~f~~ 98 (144)
T cd06845 63 ISPDNAYEVFQEVARE------LFEDGGINWGRIVALFAFGG 98 (144)
T ss_pred CCcchHHHHHHHHHHH------HhccCCCChHHHHHHHHHHH
Confidence 3555565555556555 4544 799999998866444
No 9
>cd02253 DmpA L-Aminopeptidase D-amidase/D-esterase (DmpA) family; DmpA catalyzes the release of N-terminal D and L amino acids from peptide susbtrates. DmpA is synthesized as a single polypeptide precursor, which is autocatalytically cleaved to the active heterodimeric form. The cleavage results in two polypeptide chains, with one chain containing an N-terminal nucleophile. This group represents one of the rare aminopeptidases that are not metalloenzymes. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucleophilic attack of the side chain of an N-terminal serine, threonine, or cysteine.
Probab=73.14 E-value=7.9 Score=40.84 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=39.9
Q ss_pred CcccchhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCC
Q 012099 248 PNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLS 303 (471)
Q Consensus 248 PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a 303 (471)
|.+.|.+.+|.|||++++..|+++-+++-+-==-.|+- +.+.--|+++.|++|..
T Consensus 227 ~~~nStI~VVATDApL~~~Ql~RlA~rA~~GlAR~g~p-~~~~dGD~vfa~ST~~~ 281 (339)
T cd02253 227 PDDGSIIIVIATDAPLLPRQLKRLAKRAPLGLARTGSF-GGNGSGDIFLAFSTANT 281 (339)
T ss_pred CCCCCEEEEEEeCCcCCHHHHHHHHHHhhccccccccC-CCCCCcCeeEEEecccc
Confidence 46789999999999999999999988886531111222 12333478999999864
No 10
>COG3191 DmpA L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.71 E-value=4.8 Score=42.47 Aligned_cols=232 Identities=19% Similarity=0.217 Sum_probs=114.9
Q ss_pred CCCCCCceecCCCccccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCC---CCee
Q 012099 56 FLPEGPWKQIPGGVTAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSS---KTAR 132 (471)
Q Consensus 56 ~~p~~~~~~~~g~v~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~---~~~r 132 (471)
.++.+|++ .+|-.+|++++...- ++.+ -+--+.+|.++.++ +|-...+.++|+.-.-..+... ..+.
T Consensus 8 ~~~~gp~N----~ITDV~Gi~VGh~T~-~~~~-~~TGVTvILp~~ga----~~~v~v~gg~p~~ngt~~l~p~~~v~evg 77 (348)
T COG3191 8 IFMPGPRN----AITDVPGIKVGHVTL-IRGD-VRTGVTVILPHPGA----VAAVKVRGGAPGTNGTGLLTPLNQVEEVG 77 (348)
T ss_pred ccCCCCcc----ceecCCceEeeeEec-ccCC-ccCceEEEecCCCc----ccccccccccccccCCCccCccceeeecC
Confidence 34445554 467788998875441 2211 14567888887754 4444556677775443334321 2456
Q ss_pred EEEEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCCcE------EEecccc-----CCcc-cChHHHHhhHHHHHhhcC
Q 012099 133 AVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEV------LIESTGV-----IGQR-IKKDALLNSLPKLVNSLS 200 (471)
Q Consensus 133 avvvNSGnANA~TG~~G~~da~~~~~~~A~~l~~~~~~V------lv~STGV-----IG~~-Lpmdki~~~i~~~~~~L~ 200 (471)
+|+.-=|-+|-.-=..|.+.+.+..+...+.-.. ...| +|+=+.+ |+-+ .--|-..+++..+-..
T Consensus 78 ai~lpg~stngl~aa~~v~~~l~~r~~g~~~~~~-g~~vpiv~~avv~d~~dG~lnd~~~~~p~~~~g~~A~~aA~~g-- 154 (348)
T COG3191 78 AIVLPGGSTNGLAAADGVMRALEERERGFENPDG-GRKVPIVPNAVVFDLNDGGLNDIGGHHPTRDHGYAALKAAGTG-- 154 (348)
T ss_pred eEEeccceeccchHHHHHHHHHHHhhcccccCCC-CceeeeeeccEEEEccCCCccccccCCCCHHHHHHHHHhccCC--
Confidence 7777777777543333333333333322211100 0011 1111211 1111 1112222222222110
Q ss_pred CCCccHHHHHHHHcCCCCCccE---EEEEEEECCeE-EEEeEEecc-----------------------CCc--CCCccc
Q 012099 201 SSTEGADSAAVAITTTDLVSKS---VAVESQVGGTY-IRVGGMAKG-----------------------SGM--IHPNMA 251 (471)
Q Consensus 201 ~~~~~~~~aA~AImTTDt~pK~---~~~~~~~~g~~-v~i~GiAKG-----------------------sGM--I~PnMA 251 (471)
+-+++.-- |-.=||+=.|++- ++++++.+++. ++++--.-| +-| .-|-+.
T Consensus 155 ~v~~G~VG-AGtGata~~fKGG~GsASr~v~~g~~v~~~v~vn~~gn~g~~~~~~l~g~p~g~~~~~~~~~~~~~~~~~g 233 (348)
T COG3191 155 PVEEGSVG-AGTGATAFGFKGGLGSASRRVENGGTVGATVGVNVLGNFGDRRTLLLWGAPVGFDGRGPPPRAEAGGDEKG 233 (348)
T ss_pred CccccCcc-cccceeeeeecCcccceEEEeccCceEEEEEEEeecccccccCCceeccccccccccCCCccccCCCCCCC
Confidence 00001000 1112444455543 45666665543 333322221 112 445567
Q ss_pred chhhhhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCC-chhhhhhhccCC
Q 012099 252 TMLGVVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTS-TNDTVIALASGL 302 (471)
Q Consensus 252 TML~fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtS-TNDtvlllAnG~ 302 (471)
|.+.+|.|||++++..||++-+++-+- |-|.-=-..++ --|+++.||+|.
T Consensus 234 TtI~vvATDapL~~aq~~RlA~rA~~G-lARtg~p~~~~~dGD~~fAfsTg~ 284 (348)
T COG3191 234 TTIGVVATDAPLTKAQLKRLARRAHDG-LARTGRPAHTGLDGDTAFAFSTGN 284 (348)
T ss_pred CEEEEEEcCCcCCHHHHHHHHHHhhcc-hheecccccCCCCCCEEEEEeccC
Confidence 999999999999999999988888553 44433333344 458999999996
No 11
>PF00452 Bcl-2: Apoptosis regulator proteins, Bcl-2 family; InterPro: IPR000712 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. Active cell suicide (apoptosis) is induced by events such as growth factor withdrawal and toxins. It is controlled by regulators, which have either an inhibitory effect on programmed cell death (anti-apoptotic) or block the protective effect of inhibitors (pro-apoptotic) [, ]. Many viruses have found a way of countering defensive apoptosis by encoding their own anti-apoptosis genes preventing their target-cells from dying too soon. All proteins belonging to the Bcl-2 family [] contain either a BH1, BH2, BH3, or BH4 domain. All anti-apoptotic proteins contain BH1 and BH2 domains, some of them contain an additional N-terminal BH4 domain (Bcl-2, Bcl-x(L), Bcl-w), which is never seen in pro-apoptotic proteins, except for Bcl-x(S). On the other hand, all pro-apoptotic proteins contain a BH3 domain (except for Bad) necessary for dimerisation with other proteins of Bcl-2 family and crucial for their killing activity, some of them also contain BH1 and BH2 domains (Bax, Bak). The BH3 domain is also present in some anti-apoptotic protein, such as Bcl-2 or Bcl-x(L). Proteins that are known to contain these domains include vertebrate Bcl-2 (alpha and beta isoforms) and Bcl-x (isoforms (Bcl-x(L) and Bcl-x(S)); mammalian proteins Bax and Bak; mouse protein Bid; Xenopus laevis proteins Xr1 and Xr11; human induced myeloid leukemia cell differentiation protein MCL1 and Caenorhabditis elegans protein ced-9.; GO: 0042981 regulation of apoptosis; PDB: 2WH6_A 1K3K_A 1AF3_A 3PK1_B 2K7W_A 1F16_A 3PL7_C 2VM6_A 3I1H_A 3MQP_A ....
Probab=71.39 E-value=7.5 Score=32.77 Aligned_cols=19 Identities=42% Similarity=0.868 Sum_probs=14.3
Q ss_pred hhC-CCCChhhHhhhhccCC
Q 012099 375 VYG-RDPNWGRIAAAAGYAG 393 (471)
Q Consensus 375 i~G-~DpNWGRIlaAiG~SG 393 (471)
+|. +.+|||||++-..-++
T Consensus 42 lf~d~~inWGRIval~~f~~ 61 (101)
T PF00452_consen 42 LFEDGGINWGRIVALFAFAG 61 (101)
T ss_dssp HTTTSSTCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHH
Confidence 344 4899999999876554
No 12
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=68.92 E-value=7.9 Score=33.37 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhhcchhhhhhhhCCC-CChhhHhhhhccCC
Q 012099 354 SEAEAAKIARSVASSSLVKAAVYGRD-PNWGRIAAAAGYAG 393 (471)
Q Consensus 354 s~~~A~~iArsIa~S~LVKtAi~G~D-pNWGRIlaAiG~SG 393 (471)
+...+...=..|+.. +|... -|||||++-..-++
T Consensus 26 ~~~~~~~~f~~Va~~------lf~dg~inWGRIval~~F~~ 60 (100)
T smart00337 26 TPGTAIELFGEVATE------LFSDGNINWGRVVALLSFGG 60 (100)
T ss_pred CcccHHHHHHHHHHH------HHccCCCCHHHHHHHHHHHH
Confidence 445565555666555 45433 69999998876544
No 13
>cd02252 nylC_like nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC. EIII is an amide hydrolase that catalyzes the degradation of highly-polymerized 6-aminohexanoate oligomers. Together with other nylon degradation enzymes, such as 6-aminohexanoate cyclic dimer hydrolase (EI) and 6-aminohexanoate dimer hydrolase (EII), EIII plays a role in the detoxification and biological removal of the synthetic by-products of nylon manufacture. EIII shows sequence similarity to L-aminopeptidase D-amidase/D-esterase (DmpA), an aminopeptidase that releases N-terminal D and L amino acids from peptide substrates. Like DmpA, EIII undergoes autocatalytic cleavage in front of a nucleophile to form a heterodimer. DmpA shows similarity in catalytic mechanism to N-terminal nucleophile (Ntn) hydrolases, which are enzymes that catalyze the cleavage of amide bonds through the nucl
Probab=65.12 E-value=11 Score=38.41 Aligned_cols=205 Identities=21% Similarity=0.237 Sum_probs=106.5
Q ss_pred cccCceEEeeeEeecccCCCCCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCC---CCCeeEEEEecCCccccCc
Q 012099 70 TAAEGFKAAGIYAGVRAKGEKPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDS---SKTARAVLINAGQANAATG 146 (471)
Q Consensus 70 ~~p~GF~a~g~~aGiK~~g~k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~---~~~~ravvvNSGnANA~TG 146 (471)
+-.+|+++..... .. . +--+.+|..+.++ .||++=+|-+++ ..--..|+. -.++.||++--|-
T Consensus 2 tDV~Gv~VGh~t~--~~-~-~TGvTvIl~~~g~-~agvdvrgG~pG---t~et~ll~p~~~v~~v~aIvLtggs------ 67 (260)
T cd02252 2 TDVPGIRVGHATD--EE-G-LTGVTVILCPEGA-VAGVDVRGGAPG---TRETDLLDPENLVQKVHAIVLSGGS------ 67 (260)
T ss_pred cCCCCcEEeceEc--CC-C-CceeEEEEeCCCC-eEEEEecCCCcc---ccchhhcCcccccccccEEEEeCCc------
Confidence 4456888875543 22 2 5678999998765 677999996643 333233332 1467888876554
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC---c-EEEe--------ccccCCcccChHHHHhhHHHHH-hhcCCCCccHHHHHHHH
Q 012099 147 DAGYQDVVDCANTVAMLLKMRSE---E-VLIE--------STGVIGQRIKKDALLNSLPKLV-NSLSSSTEGADSAAVAI 213 (471)
Q Consensus 147 ~~G~~da~~~~~~~A~~l~~~~~---~-Vlv~--------STGVIG~~Lpmdki~~~i~~~~-~~L~~~~~~~~~aA~AI 213 (471)
.-|++.+.-+.+.+.+. ++..+ . |=+. .-|=|-.+...+-..+++..+. .... ++.--+-..
T Consensus 68 a~GL~aa~gv~~~l~e~-g~g~~~~~~~vPIV~~a~~~Dl~~~d~~~~p~~~~g~~A~~~A~~~~v~---eG~vGAGtG- 142 (260)
T cd02252 68 AFGLAAADGVMRALEER-GVGFPVGVPVVPIVPAAVLFDLGGGDKRWRPDAALGYAAAEAAGPGPFP---LGRVGAGTG- 142 (260)
T ss_pred hhhHHHHHHHHHHHHHh-CCCCCCCCceecEeCeEEEeccccCCCCCCCCHHHHHHHHHhccCCCcc---ccCcccccC-
Confidence 37888888888888776 43311 1 1111 1111211233333333333322 0000 000001111
Q ss_pred cCCCC----Ccc----EEEEEEEECCeEEEEeEEecc--CCcCCCcccchhhhhccCCCCCHHHHHHHHHHHHhcccCce
Q 012099 214 TTTDL----VSK----SVAVESQVGGTYIRVGGMAKG--SGMIHPNMATMLGVVTTDASVDSDVWRKMVKVAVNRSFNQI 283 (471)
Q Consensus 214 mTTDt----~pK----~~~~~~~~~g~~v~i~GiAKG--sGMI~PnMATML~fi~TDA~i~~~~L~~~L~~av~~SFN~I 283 (471)
|++-. .-| +++++ ++ +.++|+.+.-= -| -|.|+.|.|||++++..|+++-+++-+- +-|.
T Consensus 143 a~~g~~~~~~~KGG~GsaS~~--~~-~~~tVgalV~vN~~G------nTtI~vVaTdapL~~~ql~RlA~~A~~G-laR~ 212 (260)
T cd02252 143 ATAGKVLDRALKGGLGSASIR--LG-DGVTVGALVVVNAVG------NTTIGVVATDAALTKAEAKRLASMAHDG-LARA 212 (260)
T ss_pred ccccCcccccccCcCceeEEE--eC-CCcEEEEEEEEECCC------CcEEEEEEeCCcCCHHHHHHHHHHhhhh-heee
Confidence 11111 011 12222 22 23455443311 12 6999999999999999999998888552 3332
Q ss_pred eeCCCC-CchhhhhhhccCCC
Q 012099 284 TVDGDT-STNDTVIALASGLS 303 (471)
Q Consensus 284 tVDGDt-STNDtvlllAnG~a 303 (471)
---..| .--|+++.|++|..
T Consensus 213 i~p~h~~~dGD~vfa~ST~~~ 233 (260)
T cd02252 213 IRPVHTPFDGDTVFALATGEV 233 (260)
T ss_pred ccccCCCCCCCEEEEEEcCCc
Confidence 111112 22478999999863
No 14
>TIGR00865 bcl-2 Apoptosis regulator. in artificial membranes at acidic pH, proapoptotic Bcl-2 family proteins (including Bax and Bak) probably induce the mitochondrial permeability transition and cytochrome c release by interacting with permeability transition pores, the most important component for pore fomation of which is VDAC.
Probab=54.70 E-value=18 Score=35.90 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcchhhhhhhhCCCCChhhHhhhhc
Q 012099 357 EAAKIARSVASSSLVKAAVYGRDPNWGRIAAAAG 390 (471)
Q Consensus 357 ~A~~iArsIa~S~LVKtAi~G~DpNWGRIlaAiG 390 (471)
.|...=.+|++. +|...-|||||++-.-
T Consensus 99 ~a~~~F~~Va~e------lF~DGiNWGRIVaLfa 126 (213)
T TIGR00865 99 TARQSFFQVAAE------LFRDGVNWGRIVAFFS 126 (213)
T ss_pred cHHHHHHHHHHH------HhcCCCCHHHHHHHHH
Confidence 355555566644 5665699999987654
No 15
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=45.85 E-value=26 Score=34.04 Aligned_cols=92 Identities=20% Similarity=0.373 Sum_probs=64.1
Q ss_pred CCcEEEEEeCCCceEEEEeccCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHHHHHHHHHHHhC---C
Q 012099 90 KPDVALVLCDVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLK---M 166 (471)
Q Consensus 90 k~Dlali~se~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~da~~~~~~~A~~l~---~ 166 (471)
..||-.+..+-|- +-|-..+|++ ++.| |+. .+.-++|--||.- .|||.+-.+|.++..+.+++.|. +
T Consensus 22 elDL~~~~~~l~~---aeYnP~qFpG---lv~R--l~e-Pk~a~LIF~SGK~-VcTGaKs~ed~~~av~~~~~~L~~~g~ 91 (185)
T COG2101 22 ELDLEEVALDLPG---AEYNPEQFPG---LVYR--LEE-PKTAALIFRSGKV-VCTGAKSVEDVHRAVKKLAKKLKDGGI 91 (185)
T ss_pred hccHHHHHhhCCC---CccCHhHCCe---eEEE--ecC-CcceEEEEecCcE-EEeccCcHHHHHHHHHHHHHHHHhcCc
Confidence 4566544443332 3577788877 4554 443 5788999999997 89999999999999999998873 2
Q ss_pred CC--C-cE----EEeccccCCcccChHHHHhhH
Q 012099 167 RS--E-EV----LIESTGVIGQRIKKDALLNSL 192 (471)
Q Consensus 167 ~~--~-~V----lv~STGVIG~~Lpmdki~~~i 192 (471)
+. + +| +| +++=++++|.++.|.-++
T Consensus 92 ~~~~~p~i~iQNIV-aSadL~~~lnL~~iA~~l 123 (185)
T COG2101 92 DIDFEPEIKVQNIV-ASADLGVELNLNAIAIGL 123 (185)
T ss_pred CcCCCCceEEEEEE-EEeccCccccHHHHHHhc
Confidence 21 1 22 33 456699999998775554
No 16
>PF03576 Peptidase_S58: Peptidase family S58 ; InterPro: IPR005321 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S58 (DmpA aminopeptidase family, clan PB(S)). The protein fold of the peptidase unit for members of this family resembles that of archaean proteasome subunit B, the type example of clan PB. The type example is aminopeptidase DmpA from OOchrobactrum anthropi. This family also contains proteins that have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the family. L-aminopeptidase D-Ala-esterase/amidase (DmpA) from O. anthropi releases the N-terminal L and/or D-Ala residues from peptide substrates. This is the only known enzyme to liberate N-terminal amino acids with both D and L stereospecificity. DmpA active form is an alphabeta heterodimer, which results from a putative autocatalytic cleavage of an inactive precursor polypeptide. DmpA shows structural homology to N-terminal nucleophile (Ntn) hydrolase family members, and may work by a similar catalytic mechanism, however their secondary structure elements differ significantly [].; PDB: 2DRH_D 3N5I_D 3N33_A 3NFB_A 3N2W_C 3NDV_D 1B65_C 3AXG_O 3S3U_A.
Probab=44.57 E-value=14 Score=38.75 Aligned_cols=220 Identities=19% Similarity=0.218 Sum_probs=105.1
Q ss_pred CCccccCceEEeeeEeecccCCCCCcEEEEEe------CCCceEEEEeccCCccccchhchHhhcCCCCCe-eEEEEecC
Q 012099 67 GGVTAAEGFKAAGIYAGVRAKGEKPDVALVLC------DVDAAAAGAFTTNVVAAAPVVYCKKTLDSSKTA-RAVLINAG 139 (471)
Q Consensus 67 g~v~~p~GF~a~g~~aGiK~~g~k~Dlali~s------e~pa~aAgvFT~N~~~AAPV~~~~~~l~~~~~~-ravvvNSG 139 (471)
+.+|-.+|++++...- .....+--+.+|.. +.+ ..|||+-+| .+|=..--..|+..+.+ ++|++-.|
T Consensus 2 N~ITDV~Gv~VGh~t~--~~~~~~TGvTvIl~~~~~~~~~~-~~agvdvrg---G~p~tret~~l~p~~~v~~~I~Ltgg 75 (326)
T PF03576_consen 2 NAITDVPGVRVGHATD--EDGEARTGVTVILPHGGNVFPEG-ATAGVDVRG---GAPGTRETDLLDPLGLVETAIVLTGG 75 (326)
T ss_dssp SSGGGSTT-EEEEEEE--EETTEEEEEEEEETTTTTTTTEE-EEEEEEEEE---ESS-ECSHHHHHHHSEEESEEEEEEG
T ss_pred CccccCCCcEEEeEEC--CCCCcCcceEEEEeCCCCCCCCC-ceEEEEeec---CCccccchhhhCcCCceeeeEEEeCC
Confidence 4577888999885543 31111456788888 433 567899999 45544444444432333 36766555
Q ss_pred CccccCcHHHHHHHHHHHHHHHHHh-CC---CCCc-EEEecc--ccCC----cccChHHHHhhHHHHHhhcCCCCccHHH
Q 012099 140 QANAATGDAGYQDVVDCANTVAMLL-KM---RSEE-VLIEST--GVIG----QRIKKDALLNSLPKLVNSLSSSTEGADS 208 (471)
Q Consensus 140 nANA~TG~~G~~da~~~~~~~A~~l-~~---~~~~-Vlv~ST--GVIG----~~Lpmdki~~~i~~~~~~L~~~~~~~~~ 208 (471)
- .-|+ .+.-+.+.+.+.- ++ ..-. -+|+.| ++|= ....-+-..+++..+... +-.++.--
T Consensus 76 s------a~Gl-aa~gv~~~l~e~~~~~~~~~~~~vPIV~~~~Da~L~Dl~~~~~~~~~g~~A~~~A~~~--~~~eG~VG 146 (326)
T PF03576_consen 76 S------AFGL-AADGVMRWLEERGIGIFDTGGGVVPIVPECNDAVLFDLRGGHVTAEMGYAALEAASSG--PVAEGNVG 146 (326)
T ss_dssp G------GHHH-HHHHHHHHHHHHTTTCSSSCTCCC-EEEEE--TTTS-CTGTSSCHHHHHHHHHHHBSS--CEEEBSSG
T ss_pred c------hHHH-HHHHHHHHHHHhCCCcCCCCCceeeEEeccCccEeeccccCCCCHHHHHHHHHHhhhc--chhccCcc
Confidence 4 3677 6666677666662 11 1111 122221 3321 111122233333332111 00001001
Q ss_pred HHHHHcCCCCCccE----EEEEEEECCeEEEEeEEe----------------ccCCc-------------CCCcccchhh
Q 012099 209 AAVAITTTDLVSKS----VAVESQVGGTYIRVGGMA----------------KGSGM-------------IHPNMATMLG 255 (471)
Q Consensus 209 aA~AImTTDt~pK~----~~~~~~~~g~~v~i~GiA----------------KGsGM-------------I~PnMATML~ 255 (471)
|-.. ||.=.+ |. +++.+..+++.++|+-+. -|--+ -.|..-|.|.
T Consensus 147 AGtG-a~~~~~-KGGiGtASr~~~~~~~~~~VGaLV~vN~G~v~~l~~~g~~~g~~~~~~~~~~~~~~~~~~~~~nTtI~ 224 (326)
T PF03576_consen 147 AGTG-ATCGGF-KGGIGTASRVVGDGGGGYTVGALVVVNAGDVGDLRIAGVPVGRELGGEDPPDAEEAEAPPPGQNTTIG 224 (326)
T ss_dssp GGTT--EETTE-E-EEEEEEEEEEETTEEEEEEEEEEEE-SEGGGEEETTBEHTTTTCTCCHHHHCCCCHSS-SSBEEEE
T ss_pred cccC-cEeccC-CCcCcceeEEeccCCCceEEEEEEEECCCCCCCceECCeecchhhccccccccccccccCCCCCCEEE
Confidence 1111 111111 21 345555555566665432 11100 1345579999
Q ss_pred hhccCCCCCHHHHHHHHHHHHhcccCceeeCCCCCchhhhhhhccCCCC
Q 012099 256 VVTTDASVDSDVWRKMVKVAVNRSFNQITVDGDTSTNDTVIALASGLSR 304 (471)
Q Consensus 256 fi~TDA~i~~~~L~~~L~~av~~SFN~ItVDGDtSTNDtvlllAnG~a~ 304 (471)
+|.|||++++..|+++-+++-+-==-.|.+=+.-| -|+++.|++|...
T Consensus 225 vVaTdApL~~~ql~RlA~~a~~GlAR~ip~ht~~d-GD~~fA~ST~~~~ 272 (326)
T PF03576_consen 225 VVATDAPLSKAQLKRLARRAHDGLARTIPVHTHGD-GDIVFAFSTGEVP 272 (326)
T ss_dssp EEEEES---HHHHHHHHHHHHHHHHHTTS-S-TTB-EEEEEEEEEEEEE
T ss_pred EEEECCcCCHHHHHHHHHHhhcchhcccCCccCCC-CCEEEEEecCCCC
Confidence 99999999999999988877543111233322222 3789999998643
No 17
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=36.46 E-value=49 Score=28.81 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 012099 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (471)
Q Consensus 145 TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~ 174 (471)
+.++=.+-++++++.+++.||++|++|.|.
T Consensus 70 ~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 70 SRSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 457777889999999999999999999984
No 18
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=36.11 E-value=29 Score=34.18 Aligned_cols=22 Identities=41% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 012099 346 EVRVTGANSEAEAAKIARSVAS 367 (471)
Q Consensus 346 ~v~V~GA~s~~~A~~iArsIa~ 367 (471)
.|..+||.||++||..||.+|.
T Consensus 78 Ki~ctgA~se~~ar~aark~aR 99 (200)
T KOG3302|consen 78 KIVCTGAKSEDSARLAARKYAR 99 (200)
T ss_pred cEEEeccCCHHHHHHHHHHHHH
Confidence 4778999999999999998863
No 19
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=32.90 E-value=56 Score=29.07 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.8
Q ss_pred ceEEEEEEeCCCCHHHHHHHHHHhhc
Q 012099 342 TCLIEVRVTGANSEAEAAKIARSVAS 367 (471)
Q Consensus 342 TKli~v~V~GA~s~~~A~~iArsIa~ 367 (471)
.-+++++|=.|.|+|.|.+|||+.+.
T Consensus 70 gL~l~mkVfnAes~EHA~RIAKs~iG 95 (102)
T PF04475_consen 70 GLILEMKVFNAESEEHAERIAKSEIG 95 (102)
T ss_pred EEEEEEEEeecCCHHHHHHHHHHHHh
Confidence 34689999999999999999999864
No 20
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=29.05 E-value=18 Score=38.24 Aligned_cols=16 Identities=44% Similarity=0.964 Sum_probs=14.0
Q ss_pred cCCcCCCcccchhhhh
Q 012099 242 GSGMIHPNMATMLGVV 257 (471)
Q Consensus 242 GsGMI~PnMATML~fi 257 (471)
|+||+||||=-++++.
T Consensus 281 G~Gmv~P~VL~~~G~~ 296 (335)
T COG0016 281 GCGMVHPNVLEAVGID 296 (335)
T ss_pred cccccCHHHHHhcCCC
Confidence 7999999998888874
No 21
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=27.86 E-value=89 Score=24.22 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 012099 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (471)
Q Consensus 145 TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~ 174 (471)
|-+|=.+-.+++.+++++.||+++++|.|.
T Consensus 13 t~eqk~~l~~~it~~l~~~lg~p~~~v~V~ 42 (64)
T PRK01964 13 PEEKIKNLIREVTEAISATLDVPKERVRVI 42 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEE
Confidence 457777888999999999999999999873
No 22
>PRK03903 transaldolase; Provisional
Probab=27.18 E-value=1.2e+02 Score=31.33 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhh
Q 012099 145 TGDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNS 191 (471)
Q Consensus 145 TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~ 191 (471)
-|..|++.++++-+..-+ -|-.+.++|.+|||+-+-.+|...+.+.
T Consensus 154 ~~~~gIa~a~~~y~~~~~-~g~~~~riL~AStg~Kn~~~~~~~yv~~ 199 (274)
T PRK03903 154 QAKSGIMNATKCYNQIEQ-HANKNIRTLFASTGVKGDDLPKDYYIKE 199 (274)
T ss_pred cccHHHHHHHHHHHHHHH-cCCCCcEEEEEecccCCCCCChHHHHHH
Confidence 488999999999987764 4567889999999999988887765443
No 23
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=25.50 E-value=59 Score=27.41 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 012099 147 DAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (471)
Q Consensus 147 ~~G~~da~~~~~~~A~~l~~~~~~Vlv~ 174 (471)
++=.+--+.+++.+++.+||+|++|+|.
T Consensus 43 e~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 43 EQKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 4445556788999999999999999984
No 24
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=23.21 E-value=76 Score=26.43 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=18.4
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 012099 346 EVRVTGANSEAEAAKIARSVAS 367 (471)
Q Consensus 346 ~v~V~GA~s~~~A~~iArsIa~ 367 (471)
.|.|+||+|+++++.+.+.+..
T Consensus 59 ki~itGaks~~~~~~a~~~i~~ 80 (86)
T PF00352_consen 59 KIVITGAKSEEEAKKAIEKILP 80 (86)
T ss_dssp EEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHHHH
Confidence 5789999999999998887753
No 25
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.58 E-value=1.1e+02 Score=33.64 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=34.1
Q ss_pred CCeeEEEEecCCccccCcH-----HHHHH---HHHHHHHHHHHhCCCCCcEEEec--cccCCcccC
Q 012099 129 KTARAVLINAGQANAATGD-----AGYQD---VVDCANTVAMLLKMRSEEVLIES--TGVIGQRIK 184 (471)
Q Consensus 129 ~~~ravvvNSGnANA~TG~-----~G~~d---a~~~~~~~A~~l~~~~~~Vlv~S--TGVIG~~Lp 184 (471)
.-++-|.||+|+-|+||=. +|.-+ -.++.+.+-..+...--+|-..| ||-+|+.+.
T Consensus 186 plieIi~intgclgaCtyckTkharg~l~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig 251 (547)
T KOG4355|consen 186 PLIEIISINTGCLGACTYCKTKHARGLLASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIG 251 (547)
T ss_pred CceEEEEeccccccccccccccccccccccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhh
Confidence 3477899999999999943 33332 23344444444444444555555 888776544
No 26
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=21.98 E-value=84 Score=30.07 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=0.0
Q ss_pred EEEEeCCCCHHHHHHHHHHhhc
Q 012099 346 EVRVTGANSEAEAAKIARSVAS 367 (471)
Q Consensus 346 ~v~V~GA~s~~~A~~iArsIa~ 367 (471)
.+.++||+|++||+.+++.++.
T Consensus 57 KiviTGaks~e~a~~a~~~i~~ 78 (174)
T cd04516 57 KMVCTGAKSEDDSKLAARKYAR 78 (174)
T ss_pred eEEEEecCCHHHHHHHHHHHHH
No 27
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=21.16 E-value=1.5e+02 Score=24.69 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcEEEeccccCCcccChHHHHhh
Q 012099 146 GDAGYQDVVDCANTVAMLLKMRSEEVLIESTGVIGQRIKKDALLNS 191 (471)
Q Consensus 146 G~~G~~da~~~~~~~A~~l~~~~~~Vlv~STGVIG~~Lpmdki~~~ 191 (471)
=+|--+-++++.+++++.||++++.|-|. =+.+|.|.+.+.
T Consensus 15 ~EqK~~La~~iT~a~~~~lg~~~e~v~V~-----I~ev~~~~W~~~ 55 (76)
T PRK01271 15 EEQKAALAADITDVIIRHLNSKDSSISIA-----LQQIQPESWQAE 55 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEE-----EEEcCHHHhhHH
Confidence 36778889999999999999999998873 256676666543
No 28
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.61 E-value=67 Score=38.58 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=36.8
Q ss_pred cchhhhhccCCCCCH------------HHHHHHHHHHHhcccCceeeCCCCCchhhhh
Q 012099 251 ATMLGVVTTDASVDS------------DVWRKMVKVAVNRSFNQITVDGDTSTNDTVI 296 (471)
Q Consensus 251 ATML~fi~TDA~i~~------------~~L~~~L~~av~~SFN~ItVDGDtSTNDtvl 296 (471)
--|+..|=.|.+.++ ..|..+++.+=...|||||+|||-++-+.++
T Consensus 598 iPli~kl~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~l 655 (1200)
T KOG0964|consen 598 IPLISKLRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVL 655 (1200)
T ss_pred cchHHHhCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCc
Confidence 346666666666555 3478889999999999999999999999976
No 29
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=20.52 E-value=1.7e+02 Score=28.60 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=42.0
Q ss_pred EeccCCccccchhchHhhcCCCCCeeEEEEecCCccccCcHHHHHHHHHHHHHHHHHhCCCCCcEEEe
Q 012099 107 AFTTNVVAAAPVVYCKKTLDSSKTARAVLINAGQANAATGDAGYQDVVDCANTVAMLLKMRSEEVLIE 174 (471)
Q Consensus 107 vFT~N~~~AAPV~~~~~~l~~~~~~ravvvNSGnANA~TG~~G~~da~~~~~~~A~~l~~~~~~Vlv~ 174 (471)
|+++|-=.-.|+++... . .++|+|+| .|-|..--.--.++.+++..+|++++..|-|+
T Consensus 126 V~~~~g~~~~P~v~ke~-~---P~I~GVlV------VAeGa~~~~Vk~~I~~AV~~ll~v~~hkI~V~ 183 (186)
T TIGR02830 126 VIIRNGDQETPVVLKTE-K---PEIRGVLV------VAEGAENPQIKYRIVEAVSRVLDVPAHKVSVL 183 (186)
T ss_pred EEECCCCCccceEEEEe-c---CCceEEEE------EeeCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 45554446678765432 2 47999888 45555556677889999999999999999885
No 30
>PF10229 DUF2246: Uncharacterized conserved protein (DUF2246); InterPro: IPR019362 This entry represents conserved proteins found in the metazoa but absent from fungi. They are all approximately 300 residues in length and have no known function.
Probab=20.18 E-value=45 Score=34.36 Aligned_cols=39 Identities=33% Similarity=0.413 Sum_probs=32.1
Q ss_pred EEEEeEEeccCCcCCCcccc--hhhhhccCCCCCHHHHHHHHH
Q 012099 233 YIRVGGMAKGSGMIHPNMAT--MLGVVTTDASVDSDVWRKMVK 273 (471)
Q Consensus 233 ~v~i~GiAKGsGMI~PnMAT--ML~fi~TDA~i~~~~L~~~L~ 273 (471)
.+.-.|.|| =|.||.-.| .-+.|+|||+.+...|+++|+
T Consensus 238 ~i~d~gcCk--VI~Hp~wgt~vf~GsifT~AP~~~~~~~~ll~ 278 (278)
T PF10229_consen 238 PIEDLGCCK--VIRHPKWGTAVFPGSIFTTAPPDSPILKKLLK 278 (278)
T ss_pred eeecCCCCE--EEeecCCCccEEeEEEEeCCCCCHHHHHHhhC
Confidence 344466666 278999988 789999999999999999885
Done!