BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012101
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGN 408
E+++N YQ P + Y +D G L+E +V G N+++ G G E+
Sbjct: 32 ELLENEYQFIPNY--YIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEE--- 86
Query: 409 VKMGEWVAKHLQELEPWSDGAYVV 432
+K K L+ L+ WSDG + V
Sbjct: 87 IKKLHTQGKLLESLQVWSDGKFSV 110
>pdb|2A14|A Chain A, Crystal Structure Of Human Indolethylamine N-
Methyltransferase With Sah
Length = 263
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 399 LMGACEKFGNVKMGEWVAKHLQELEPW---SDGAY------VVLSNIYASRGLWEEV-ER 448
++ AC+ F ++ + ++ ++ +ELE W GAY + + G WEE E+
Sbjct: 71 VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130
Query: 449 IRAVMKH 455
+RA +K
Sbjct: 131 LRAAVKR 137
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429
L+ ACE F + + ++ ++LQELE W A
Sbjct: 90 LLSACESFKEIVVTDYSDQNLQELEKWLKAA 120
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 283 WEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF---VGVLSACVHG 338
WE+ Q + I + G A A + MRE G+ P HV VG ++ V G
Sbjct: 184 WEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLG 242
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 283 WEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF---VGVLSACVHG 338
WE+ Q + I + G A A + MRE G+ P HV VG ++ V G
Sbjct: 184 WEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLG 242
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 283 WEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF---VGVLSACVHG 338
WE+ Q + I + G A A + MRE G+ P HV VG ++ V G
Sbjct: 184 WEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLG 242
>pdb|3MKR|A Chain A, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 291
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 34/154 (22%)
Query: 213 LKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT-LMLNSLIDMYGK 271
LKK + +D T+ + +A SL LQ Y+FQ + + S T L+LN +
Sbjct: 153 LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212
Query: 272 CGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGV 331
GR WE AA G+ EALD ++SG P + + V
Sbjct: 213 QGR--------WE----------------AAEGVLQEALD-----KDSG-HPETLINLVV 242
Query: 332 LSACVHGGKVQE-GKHFFEMMKNVYQIEPRFAHY 364
LS H GK E + +K+ ++ P Y
Sbjct: 243 LSQ--HLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,490,328
Number of Sequences: 62578
Number of extensions: 535482
Number of successful extensions: 1246
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 8
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)