Query 012101
Match_columns 471
No_of_seqs 557 out of 2864
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 08:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.8E-73 8.2E-78 571.2 51.6 447 16-469 124-570 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.1E-69 4.5E-74 556.7 51.3 442 18-468 291-732 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 8.5E-65 1.8E-69 522.5 48.2 432 18-460 190-623 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-62 3E-67 497.6 49.2 438 17-462 372-847 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.4E-62 5.3E-67 495.8 46.9 438 16-462 438-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.8E-57 1E-61 454.5 43.2 382 76-461 77-461 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.4E-27 2E-31 244.9 45.2 420 22-457 438-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-25 2.5E-30 236.6 46.8 415 25-454 475-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.6E-20 5.7E-25 176.4 31.1 292 95-421 44-346 (389)
10 PRK11447 cellulose synthase su 99.9 1.3E-18 2.8E-23 184.8 46.7 347 95-455 360-739 (1157)
11 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4E-25 177.4 29.1 292 164-463 43-354 (389)
12 KOG4626 O-linked N-acetylgluco 99.9 1.1E-19 2.4E-24 165.6 29.8 377 45-437 110-500 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-18 5.2E-23 171.6 42.7 390 56-456 132-571 (615)
14 PRK11447 cellulose synthase su 99.9 1.1E-18 2.5E-23 185.1 41.3 390 58-461 276-705 (1157)
15 PRK15174 Vi polysaccharide exp 99.9 1.6E-18 3.4E-23 172.4 38.2 349 68-426 19-385 (656)
16 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.4E-24 163.9 26.8 364 86-461 116-490 (966)
17 PRK09782 bacteriophage N4 rece 99.9 6.5E-17 1.4E-21 164.8 46.2 190 266-459 516-709 (987)
18 PRK10049 pgaA outer membrane p 99.9 8E-18 1.7E-22 171.0 37.4 393 56-459 20-459 (765)
19 PRK15174 Vi polysaccharide exp 99.8 9.5E-18 2.1E-22 166.9 36.0 353 97-459 16-384 (656)
20 PRK10049 pgaA outer membrane p 99.8 4.3E-16 9.4E-21 158.4 42.4 404 12-429 12-463 (765)
21 PRK14574 hmsH outer membrane p 99.8 1.5E-15 3.3E-20 151.7 42.4 430 21-460 38-517 (822)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-15 5.6E-20 150.0 41.5 377 35-425 145-574 (615)
23 PRK14574 hmsH outer membrane p 99.8 4.5E-14 9.7E-19 141.4 40.3 384 67-459 47-482 (822)
24 KOG4422 Uncharacterized conser 99.7 1.1E-13 2.4E-18 121.6 36.0 304 25-337 125-480 (625)
25 KOG2002 TPR-containing nuclear 99.7 1.6E-13 3.6E-18 132.2 35.5 419 34-458 216-677 (1018)
26 PRK09782 bacteriophage N4 rece 99.7 3E-13 6.5E-18 138.3 39.4 384 55-459 317-743 (987)
27 KOG4422 Uncharacterized conser 99.7 2.6E-13 5.7E-18 119.3 31.2 353 47-424 203-592 (625)
28 KOG2076 RNA polymerase III tra 99.7 3.7E-13 8.1E-18 128.9 32.1 327 135-467 153-523 (895)
29 PF13429 TPR_15: Tetratricopep 99.7 4.1E-16 8.8E-21 140.1 11.1 256 193-455 14-276 (280)
30 KOG2002 TPR-containing nuclear 99.6 1E-12 2.2E-17 126.9 30.2 399 47-457 267-746 (1018)
31 KOG1915 Cell cycle control pro 99.6 2.1E-12 4.6E-17 115.1 29.7 395 67-471 86-515 (677)
32 KOG2003 TPR repeat-containing 99.6 1.3E-12 2.9E-17 115.7 26.6 346 89-442 279-709 (840)
33 PRK10747 putative protoheme IX 99.6 1.1E-12 2.5E-17 123.3 27.5 284 99-422 97-390 (398)
34 PRK10747 putative protoheme IX 99.6 7.8E-12 1.7E-16 117.6 31.2 275 169-455 97-389 (398)
35 TIGR00540 hemY_coli hemY prote 99.6 9.8E-12 2.1E-16 117.6 31.8 143 277-421 247-398 (409)
36 PF13429 TPR_15: Tetratricopep 99.6 2.2E-14 4.7E-19 129.0 11.6 256 91-352 13-275 (280)
37 KOG2003 TPR repeat-containing 99.5 1.3E-11 2.9E-16 109.5 27.2 396 53-459 203-692 (840)
38 KOG1155 Anaphase-promoting com 99.5 6.9E-11 1.5E-15 105.4 31.4 315 131-455 174-494 (559)
39 KOG0495 HAT repeat protein [RN 99.5 2.5E-10 5.5E-15 106.0 35.9 362 87-456 441-880 (913)
40 TIGR00540 hemY_coli hemY prote 99.5 1.4E-11 2.9E-16 116.7 28.5 294 87-387 83-396 (409)
41 KOG0547 Translocase of outer m 99.5 2.3E-11 5E-16 109.0 27.0 351 91-454 120-564 (606)
42 KOG2076 RNA polymerase III tra 99.5 1.2E-10 2.6E-15 112.1 33.3 347 68-419 153-552 (895)
43 KOG1915 Cell cycle control pro 99.5 5.5E-10 1.2E-14 100.0 35.1 395 47-455 137-584 (677)
44 COG2956 Predicted N-acetylgluc 99.5 4.2E-11 9E-16 102.0 26.6 224 88-319 38-278 (389)
45 KOG1126 DNA-binding cell divis 99.5 2.6E-12 5.6E-17 119.5 19.9 276 171-459 334-623 (638)
46 KOG1126 DNA-binding cell divis 99.5 4.9E-12 1.1E-16 117.7 21.1 279 136-427 334-625 (638)
47 KOG0495 HAT repeat protein [RN 99.5 8E-10 1.7E-14 102.8 34.9 339 89-435 519-893 (913)
48 COG3071 HemY Uncharacterized e 99.5 2.3E-10 5E-15 100.5 29.8 297 89-422 85-390 (400)
49 COG2956 Predicted N-acetylgluc 99.5 8.6E-11 1.9E-15 100.1 25.9 291 123-421 38-346 (389)
50 KOG4318 Bicoid mRNA stability 99.4 3.9E-11 8.4E-16 114.9 23.8 251 107-376 11-286 (1088)
51 COG3071 HemY Uncharacterized e 99.4 3.3E-10 7.1E-15 99.5 27.6 289 55-387 86-387 (400)
52 KOG1173 Anaphase-promoting com 99.4 1.4E-09 3E-14 99.7 31.6 422 18-457 19-519 (611)
53 TIGR02521 type_IV_pilW type IV 99.4 6.5E-11 1.4E-15 103.5 22.7 198 258-456 30-232 (234)
54 PF13041 PPR_2: PPR repeat fam 99.4 4.1E-13 9E-18 85.0 5.6 50 84-133 1-50 (50)
55 KOG1155 Anaphase-promoting com 99.4 1.5E-09 3.3E-14 97.0 29.4 337 67-421 177-535 (559)
56 KOG4318 Bicoid mRNA stability 99.4 1.1E-09 2.4E-14 105.2 28.5 107 362-469 492-606 (1088)
57 PF13041 PPR_2: PPR repeat fam 99.4 2.1E-12 4.5E-17 81.8 6.8 50 288-337 1-50 (50)
58 KOG1840 Kinesin light chain [C 99.4 2.5E-10 5.3E-15 107.3 23.1 233 222-454 199-477 (508)
59 PRK12370 invasion protein regu 99.3 2.3E-09 5.1E-14 105.5 26.4 261 186-458 255-537 (553)
60 PF12569 NARP1: NMDA receptor- 99.2 6.2E-08 1.4E-12 92.5 32.2 285 61-355 14-335 (517)
61 TIGR02521 type_IV_pilW type IV 99.2 5.7E-09 1.2E-13 91.1 23.6 196 189-421 33-231 (234)
62 KOG1174 Anaphase-promoting com 99.2 1.8E-07 3.8E-12 82.9 31.7 368 53-431 99-509 (564)
63 KOG1173 Anaphase-promoting com 99.2 1.2E-08 2.7E-13 93.6 25.3 271 89-369 247-530 (611)
64 KOG0547 Translocase of outer m 99.2 6.7E-08 1.5E-12 87.3 29.2 218 197-423 336-567 (606)
65 PRK12370 invasion protein regu 99.2 4.8E-09 1.1E-13 103.3 24.4 206 171-387 319-532 (553)
66 KOG1840 Kinesin light chain [C 99.2 3.6E-09 7.8E-14 99.6 21.7 233 189-421 201-478 (508)
67 KOG3785 Uncharacterized conser 99.2 3.5E-07 7.5E-12 79.5 29.9 389 18-425 25-493 (557)
68 KOG1129 TPR repeat-containing 99.2 2.8E-09 6E-14 91.2 17.1 229 191-456 227-458 (478)
69 KOG1156 N-terminal acetyltrans 99.2 5.2E-07 1.1E-11 84.5 32.8 380 67-458 54-470 (700)
70 KOG1129 TPR repeat-containing 99.1 1.9E-09 4.2E-14 92.1 14.7 224 90-319 227-458 (478)
71 KOG2376 Signal recognition par 99.1 2.3E-06 4.9E-11 79.5 34.8 405 22-453 19-517 (652)
72 KOG3616 Selective LIM binding 99.1 7.9E-08 1.7E-12 91.0 25.5 235 194-466 713-947 (1636)
73 PRK11189 lipoprotein NlpI; Pro 99.1 1.5E-08 3.2E-13 91.4 20.5 231 197-437 36-281 (296)
74 KOG4162 Predicted calmodulin-b 99.1 3E-07 6.5E-12 87.8 29.1 399 45-458 318-785 (799)
75 KOG2047 mRNA splicing factor [ 99.1 3E-06 6.6E-11 79.5 34.5 427 19-453 173-684 (835)
76 PF12569 NARP1: NMDA receptor- 99.1 7.7E-08 1.7E-12 91.8 24.9 148 308-458 129-293 (517)
77 KOG2047 mRNA splicing factor [ 99.1 2.3E-06 5E-11 80.2 32.4 389 53-456 104-579 (835)
78 PF04733 Coatomer_E: Coatomer 99.0 4.4E-09 9.4E-14 93.5 13.6 250 164-427 9-270 (290)
79 KOG4340 Uncharacterized conser 99.0 1E-07 2.3E-12 80.7 20.1 310 116-451 5-334 (459)
80 PRK11189 lipoprotein NlpI; Pro 99.0 3.1E-07 6.7E-12 82.9 24.7 93 190-286 67-159 (296)
81 KOG1174 Anaphase-promoting com 99.0 3.9E-06 8.5E-11 74.6 30.2 267 185-460 230-504 (564)
82 PF04733 Coatomer_E: Coatomer 99.0 3.4E-08 7.3E-13 87.8 18.0 216 161-387 40-262 (290)
83 COG3063 PilF Tfp pilus assembl 99.0 7.7E-08 1.7E-12 78.7 17.5 191 262-453 38-233 (250)
84 KOG1156 N-terminal acetyltrans 99.0 4.7E-06 1E-10 78.3 31.0 393 53-458 10-436 (700)
85 KOG3785 Uncharacterized conser 98.9 6.1E-07 1.3E-11 78.0 22.1 371 68-459 36-493 (557)
86 KOG4340 Uncharacterized conser 98.9 1.4E-06 3.1E-11 74.0 23.6 384 55-455 14-442 (459)
87 cd05804 StaR_like StaR_like; a 98.9 5.5E-06 1.2E-10 77.5 30.6 197 85-286 5-213 (355)
88 KOG2376 Signal recognition par 98.9 1.5E-05 3.2E-10 74.3 31.4 78 376-454 356-444 (652)
89 cd05804 StaR_like StaR_like; a 98.9 3.7E-06 8E-11 78.7 29.0 195 262-456 117-336 (355)
90 KOG4162 Predicted calmodulin-b 98.9 5.3E-06 1.1E-10 79.6 28.5 101 364-464 653-757 (799)
91 COG3063 PilF Tfp pilus assembl 98.9 1.2E-06 2.6E-11 71.9 20.6 188 189-383 37-229 (250)
92 PRK04841 transcriptional regul 98.8 4.3E-06 9.3E-11 88.5 29.6 326 132-457 385-761 (903)
93 KOG0624 dsRNA-activated protei 98.8 8.5E-06 1.8E-10 70.8 24.3 290 162-459 44-373 (504)
94 KOG3617 WD40 and TPR repeat-co 98.8 3.6E-05 7.7E-10 74.5 30.3 364 40-450 715-1168(1416)
95 PRK04841 transcriptional regul 98.8 3.2E-05 6.9E-10 82.0 33.7 358 67-425 354-763 (903)
96 PRK10370 formate-dependent nit 98.8 5.5E-07 1.2E-11 75.6 16.2 122 338-461 52-178 (198)
97 KOG1125 TPR repeat-containing 98.8 3.8E-07 8.3E-12 84.4 16.2 218 232-454 295-525 (579)
98 KOG1070 rRNA processing protei 98.8 1.2E-06 2.6E-11 88.8 20.7 226 221-449 1457-1693(1710)
99 TIGR03302 OM_YfiO outer membra 98.7 1.5E-06 3.2E-11 76.0 18.7 183 257-457 31-233 (235)
100 KOG0548 Molecular co-chaperone 98.7 2.4E-06 5.1E-11 78.6 20.1 358 94-459 10-458 (539)
101 KOG1070 rRNA processing protei 98.7 8.2E-06 1.8E-10 83.1 24.4 202 256-461 1455-1668(1710)
102 KOG1914 mRNA cleavage and poly 98.7 0.0003 6.6E-09 65.2 32.7 150 306-458 347-503 (656)
103 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.7E-13 56.8 3.4 32 151-182 2-33 (34)
104 KOG3616 Selective LIM binding 98.7 4.7E-05 1E-09 72.8 27.0 254 170-457 746-1025(1636)
105 PF12854 PPR_1: PPR repeat 98.6 5.2E-08 1.1E-12 55.2 4.3 32 356-387 2-33 (34)
106 KOG1128 Uncharacterized conser 98.6 4E-06 8.7E-11 79.9 18.6 212 227-458 403-618 (777)
107 KOG0624 dsRNA-activated protei 98.6 6.5E-05 1.4E-09 65.5 23.6 205 194-427 162-375 (504)
108 TIGR03302 OM_YfiO outer membra 98.6 1.1E-05 2.4E-10 70.6 19.7 181 221-424 32-234 (235)
109 KOG0985 Vesicle coat protein c 98.6 0.00029 6.2E-09 70.1 30.2 213 81-314 979-1218(1666)
110 KOG1127 TPR repeat-containing 98.6 3.1E-05 6.6E-10 76.5 23.5 398 33-452 474-909 (1238)
111 KOG0985 Vesicle coat protein c 98.6 0.00027 5.9E-09 70.2 29.1 165 267-452 1056-1245(1666)
112 PRK15359 type III secretion sy 98.6 1.6E-06 3.5E-11 68.9 12.0 91 367-457 30-122 (144)
113 KOG0548 Molecular co-chaperone 98.5 0.00022 4.7E-09 66.1 26.2 209 225-439 227-472 (539)
114 KOG3617 WD40 and TPR repeat-co 98.5 0.00036 7.9E-09 67.9 28.1 207 46-286 753-994 (1416)
115 KOG3081 Vesicle coat complex C 98.5 4E-05 8.6E-10 64.5 19.1 250 165-427 17-276 (299)
116 KOG1128 Uncharacterized conser 98.5 5.1E-06 1.1E-10 79.3 15.4 211 53-286 400-614 (777)
117 COG4783 Putative Zn-dependent 98.5 0.0001 2.2E-09 67.5 22.1 180 257-458 272-456 (484)
118 PRK10370 formate-dependent nit 98.4 3.4E-05 7.3E-10 64.9 17.9 154 266-430 23-181 (198)
119 KOG1125 TPR repeat-containing 98.4 1.7E-05 3.6E-10 73.9 16.6 247 196-449 294-564 (579)
120 COG5010 TadD Flp pilus assembl 98.4 5.5E-05 1.2E-09 63.7 17.9 149 265-416 72-225 (257)
121 KOG3081 Vesicle coat complex C 98.4 0.00015 3.3E-09 61.1 20.3 214 163-387 48-268 (299)
122 PLN02789 farnesyltranstransfer 98.4 0.00017 3.8E-09 65.2 22.5 147 307-456 125-302 (320)
123 TIGR00756 PPR pentatricopeptid 98.4 6E-07 1.3E-11 51.8 4.2 35 87-121 1-35 (35)
124 PRK15359 type III secretion sy 98.4 1.2E-05 2.5E-10 63.9 12.7 122 311-438 14-137 (144)
125 KOG2053 Mitochondrial inherita 98.4 0.0036 7.7E-08 61.9 32.1 414 25-460 19-506 (932)
126 PRK14720 transcript cleavage f 98.4 0.00051 1.1E-08 69.6 26.7 31 84-114 29-59 (906)
127 PF13812 PPR_3: Pentatricopept 98.3 9E-07 1.9E-11 50.6 4.1 33 87-119 2-34 (34)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.2E-10 72.2 15.0 124 328-456 172-297 (395)
129 PRK15179 Vi polysaccharide bio 98.3 0.00015 3.2E-09 72.5 21.4 129 290-423 86-218 (694)
130 COG5010 TadD Flp pilus assembl 98.3 5E-05 1.1E-09 63.9 14.8 173 277-453 52-228 (257)
131 COG4783 Putative Zn-dependent 98.3 0.00017 3.8E-09 66.1 19.1 178 274-456 252-437 (484)
132 PLN02789 farnesyltranstransfer 98.3 0.00015 3.2E-09 65.7 18.7 189 268-459 46-253 (320)
133 PRK14720 transcript cleavage f 98.3 0.00019 4.1E-09 72.6 21.0 230 157-438 32-268 (906)
134 TIGR02552 LcrH_SycD type III s 98.2 1.7E-05 3.6E-10 62.6 11.0 90 367-456 23-114 (135)
135 TIGR00756 PPR pentatricopeptid 98.2 2.3E-06 5.1E-11 49.2 4.5 34 291-324 1-34 (35)
136 PRK15363 pathogenicity island 98.2 2E-05 4.4E-10 61.7 10.3 94 364-457 38-133 (157)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.8E-05 1.5E-09 69.2 15.3 128 260-391 170-298 (395)
138 PF13812 PPR_3: Pentatricopept 98.2 4E-06 8.7E-11 47.9 4.2 33 291-323 2-34 (34)
139 KOG1127 TPR repeat-containing 98.1 0.001 2.2E-08 66.3 22.2 346 102-459 474-882 (1238)
140 PF09976 TPR_21: Tetratricopep 98.1 0.00014 3.1E-09 57.9 13.7 125 327-453 14-144 (145)
141 KOG1914 mRNA cleavage and poly 98.1 0.009 2E-07 55.9 34.6 389 48-448 18-531 (656)
142 KOG2041 WD40 repeat protein [G 98.1 0.0077 1.7E-07 58.0 26.5 260 22-318 664-951 (1189)
143 PF12895 Apc3: Anaphase-promot 98.0 6.4E-06 1.4E-10 58.7 4.4 78 374-452 2-83 (84)
144 TIGR02795 tol_pal_ybgF tol-pal 98.0 5.8E-05 1.3E-09 57.9 10.0 97 330-426 7-109 (119)
145 cd00189 TPR Tetratricopeptide 98.0 7.3E-05 1.6E-09 54.3 10.1 94 364-457 3-98 (100)
146 TIGR02552 LcrH_SycD type III s 98.0 0.00026 5.6E-09 55.7 13.6 113 312-428 5-120 (135)
147 PF01535 PPR: PPR repeat; Int 98.0 7.5E-06 1.6E-10 45.5 3.3 31 87-117 1-31 (31)
148 KOG3060 Uncharacterized conser 98.0 0.0018 4E-08 54.4 18.3 164 262-428 55-226 (289)
149 PRK15179 Vi polysaccharide bio 98.0 0.0005 1.1E-08 68.8 18.0 131 219-353 83-216 (694)
150 KOG3060 Uncharacterized conser 98.0 0.00097 2.1E-08 56.0 16.0 163 292-458 54-222 (289)
151 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00026 5.6E-09 54.2 12.1 97 363-459 4-108 (119)
152 PF09976 TPR_21: Tetratricopep 97.9 0.00099 2.1E-08 53.1 15.2 125 293-419 15-144 (145)
153 PLN03088 SGT1, suppressor of 97.9 5.3E-05 1.2E-09 70.1 8.7 103 332-436 9-113 (356)
154 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.5E-10 43.7 3.5 30 292-321 2-31 (31)
155 PF13414 TPR_11: TPR repeat; P 97.8 4.9E-05 1.1E-09 51.7 5.7 65 392-456 2-67 (69)
156 PF13432 TPR_16: Tetratricopep 97.8 3.8E-05 8.3E-10 51.5 4.6 60 399-458 3-62 (65)
157 PF05843 Suf: Suppressor of fo 97.8 0.0016 3.5E-08 58.2 16.2 133 291-426 2-140 (280)
158 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.028 6.2E-07 51.5 25.7 134 44-183 35-188 (660)
159 COG4235 Cytochrome c biogenesi 97.7 0.00049 1.1E-08 59.7 11.3 112 358-469 153-269 (287)
160 PF08579 RPM2: Mitochondrial r 97.7 0.00032 6.9E-09 51.1 8.3 80 89-168 28-116 (120)
161 PF10037 MRP-S27: Mitochondria 97.7 0.00035 7.6E-09 64.9 10.9 114 53-169 68-186 (429)
162 PRK02603 photosystem I assembl 97.7 0.00051 1.1E-08 56.6 11.0 81 328-408 38-121 (172)
163 PF04840 Vps16_C: Vps16, C-ter 97.7 0.04 8.7E-07 49.9 23.9 110 326-452 178-287 (319)
164 PF13371 TPR_9: Tetratricopept 97.7 7.4E-05 1.6E-09 51.5 4.4 61 400-460 2-62 (73)
165 PF12895 Apc3: Anaphase-promot 97.6 0.00021 4.5E-09 50.8 6.7 79 339-417 3-82 (84)
166 PF14559 TPR_19: Tetratricopep 97.6 8.9E-05 1.9E-09 50.2 4.5 56 404-459 2-57 (68)
167 PF06239 ECSIT: Evolutionarily 97.6 0.00084 1.8E-08 55.4 10.5 98 279-377 34-154 (228)
168 CHL00033 ycf3 photosystem I as 97.6 0.00073 1.6E-08 55.5 10.5 92 360-451 34-137 (168)
169 PF10037 MRP-S27: Mitochondria 97.6 0.0017 3.6E-08 60.6 13.5 118 219-336 63-184 (429)
170 KOG1538 Uncharacterized conser 97.6 0.011 2.3E-07 56.5 18.2 91 86-181 556-657 (1081)
171 PF04840 Vps16_C: Vps16, C-ter 97.6 0.057 1.2E-06 49.0 28.8 110 261-387 179-288 (319)
172 PF08579 RPM2: Mitochondrial r 97.6 0.0013 2.8E-08 47.9 9.5 81 189-271 27-116 (120)
173 PRK10153 DNA-binding transcrip 97.6 0.0041 8.8E-08 60.4 16.1 139 288-428 335-488 (517)
174 KOG0550 Molecular chaperone (D 97.5 0.0022 4.8E-08 57.7 12.8 155 299-459 178-353 (486)
175 cd00189 TPR Tetratricopeptide 97.5 0.0014 3E-08 47.4 10.1 91 332-424 7-99 (100)
176 PLN03088 SGT1, suppressor of 97.5 0.002 4.3E-08 59.8 13.1 101 296-400 8-110 (356)
177 PF14938 SNAP: Soluble NSF att 97.5 0.0045 9.7E-08 55.6 15.0 150 305-455 89-265 (282)
178 PF05843 Suf: Suppressor of fo 97.5 0.00057 1.2E-08 61.1 9.1 130 326-457 2-137 (280)
179 PRK10866 outer membrane biogen 97.5 0.05 1.1E-06 47.4 20.7 57 190-248 35-95 (243)
180 KOG0553 TPR repeat-containing 97.5 0.00052 1.1E-08 59.2 7.8 101 334-437 90-193 (304)
181 PRK02603 photosystem I assembl 97.5 0.0023 4.9E-08 52.7 11.6 91 85-176 34-126 (172)
182 KOG2280 Vacuolar assembly/sort 97.5 0.13 2.8E-06 50.4 25.3 324 91-450 442-793 (829)
183 PF14938 SNAP: Soluble NSF att 97.4 0.0086 1.9E-07 53.8 15.9 24 89-112 38-61 (282)
184 PRK10153 DNA-binding transcrip 97.4 0.0053 1.2E-07 59.6 15.3 145 320-469 332-494 (517)
185 PF13432 TPR_16: Tetratricopep 97.4 0.00075 1.6E-08 45.1 6.7 60 367-426 3-64 (65)
186 PRK10866 outer membrane biogen 97.4 0.038 8.3E-07 48.1 18.8 170 268-454 41-239 (243)
187 PF06239 ECSIT: Evolutionarily 97.4 0.00082 1.8E-08 55.4 7.8 99 73-171 33-153 (228)
188 PF07079 DUF1347: Protein of u 97.4 0.11 2.4E-06 48.0 31.3 387 53-455 48-523 (549)
189 KOG0553 TPR repeat-containing 97.4 0.002 4.4E-08 55.6 10.2 98 299-400 90-189 (304)
190 PRK10803 tol-pal system protei 97.3 0.0024 5.1E-08 56.1 10.4 84 373-456 155-246 (263)
191 COG4700 Uncharacterized protei 97.3 0.025 5.4E-07 45.5 14.9 129 321-451 85-217 (251)
192 PRK15331 chaperone protein Sic 97.3 0.0031 6.8E-08 49.9 9.6 87 370-456 46-134 (165)
193 PF13281 DUF4071: Domain of un 97.2 0.07 1.5E-06 48.9 18.8 159 264-425 146-337 (374)
194 PF12688 TPR_5: Tetratrico pep 97.2 0.007 1.5E-07 45.9 10.3 82 370-451 10-99 (120)
195 PF12688 TPR_5: Tetratrico pep 97.2 0.012 2.7E-07 44.5 11.7 91 193-285 7-101 (120)
196 KOG2053 Mitochondrial inherita 97.2 0.31 6.7E-06 49.0 36.9 416 18-452 44-532 (932)
197 KOG2796 Uncharacterized conser 97.2 0.079 1.7E-06 45.2 17.2 159 159-319 139-315 (366)
198 CHL00033 ycf3 photosystem I as 97.2 0.006 1.3E-07 50.0 10.8 81 86-167 35-117 (168)
199 KOG1130 Predicted G-alpha GTPa 97.2 0.0041 9E-08 56.0 10.1 130 327-456 197-344 (639)
200 PRK15363 pathogenicity island 97.1 0.016 3.5E-07 45.7 12.1 90 190-283 38-127 (157)
201 PF14559 TPR_19: Tetratricopep 97.1 0.0008 1.7E-08 45.5 4.3 61 337-399 3-64 (68)
202 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 3.9E-08 43.9 5.9 65 360-424 2-69 (69)
203 PF12921 ATP13: Mitochondrial 97.1 0.0076 1.7E-07 46.1 9.7 51 320-370 47-97 (126)
204 KOG2280 Vacuolar assembly/sort 97.1 0.36 7.8E-06 47.5 24.6 80 266-351 691-770 (829)
205 KOG2041 WD40 repeat protein [G 97.1 0.26 5.6E-06 48.1 21.2 312 67-423 747-1087(1189)
206 COG4700 Uncharacterized protei 96.9 0.17 3.7E-06 40.9 16.7 99 219-319 86-189 (251)
207 COG3898 Uncharacterized membra 96.9 0.33 7.2E-06 44.0 25.5 284 159-458 85-394 (531)
208 PRK10803 tol-pal system protei 96.9 0.022 4.7E-07 50.1 11.9 102 326-427 144-251 (263)
209 PF13525 YfiO: Outer membrane 96.8 0.062 1.3E-06 45.5 14.3 49 399-447 147-198 (203)
210 PF09205 DUF1955: Domain of un 96.8 0.082 1.8E-06 39.9 12.7 140 301-459 13-152 (161)
211 KOG2796 Uncharacterized conser 96.7 0.17 3.6E-06 43.3 15.5 136 291-427 178-320 (366)
212 KOG1538 Uncharacterized conser 96.7 0.097 2.1E-06 50.4 15.6 92 154-248 554-658 (1081)
213 PF13371 TPR_9: Tetratricopept 96.7 0.0066 1.4E-07 41.6 6.4 60 369-428 3-64 (73)
214 PF12921 ATP13: Mitochondrial 96.7 0.02 4.3E-07 43.9 9.1 77 325-401 2-96 (126)
215 PF10300 DUF3808: Protein of u 96.7 0.1 2.2E-06 50.4 16.0 161 294-457 192-377 (468)
216 COG3898 Uncharacterized membra 96.6 0.54 1.2E-05 42.7 26.7 301 70-387 69-389 (531)
217 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.012 2.5E-07 54.7 8.6 99 359-460 73-178 (453)
218 COG4235 Cytochrome c biogenesi 96.6 0.1 2.3E-06 45.6 13.6 111 322-435 153-268 (287)
219 PF13525 YfiO: Outer membrane 96.5 0.41 9E-06 40.5 18.4 56 193-248 11-68 (203)
220 PF13431 TPR_17: Tetratricopep 96.5 0.0021 4.6E-08 36.2 2.2 33 416-448 2-34 (34)
221 PF13424 TPR_12: Tetratricopep 96.5 0.0068 1.5E-07 42.2 5.0 60 394-453 6-72 (78)
222 PF08631 SPO22: Meiosis protei 96.4 0.63 1.4E-05 41.7 21.7 99 224-325 86-192 (278)
223 PF13424 TPR_12: Tetratricopep 96.4 0.01 2.2E-07 41.3 5.8 60 362-421 6-74 (78)
224 PF13428 TPR_14: Tetratricopep 96.4 0.0073 1.6E-07 36.5 4.3 41 395-435 3-43 (44)
225 PF03704 BTAD: Bacterial trans 96.4 0.018 3.9E-07 45.9 7.5 58 396-453 65-122 (146)
226 KOG1130 Predicted G-alpha GTPa 96.3 0.026 5.6E-07 51.1 8.6 258 95-353 26-343 (639)
227 KOG0550 Molecular chaperone (D 96.2 0.46 1E-05 43.5 16.1 147 232-387 179-347 (486)
228 KOG2610 Uncharacterized conser 96.2 0.13 2.9E-06 45.5 12.3 158 303-463 116-283 (491)
229 KOG3941 Intermediate in Toll s 96.1 0.068 1.5E-06 46.0 9.9 110 277-387 52-185 (406)
230 PRK11619 lytic murein transgly 96.1 1.9 4.1E-05 43.6 28.3 113 304-419 255-372 (644)
231 PF03704 BTAD: Bacterial trans 95.9 0.027 5.9E-07 44.8 6.6 72 87-159 63-139 (146)
232 KOG1585 Protein required for f 95.9 0.91 2E-05 38.6 15.2 53 396-449 193-249 (308)
233 PF13512 TPR_18: Tetratricopep 95.9 0.31 6.7E-06 37.9 11.8 57 372-428 21-82 (142)
234 KOG0543 FKBP-type peptidyl-pro 95.9 0.15 3.3E-06 46.4 11.7 95 362-456 258-355 (397)
235 PF13281 DUF4071: Domain of un 95.9 0.86 1.9E-05 42.0 16.6 89 160-248 145-252 (374)
236 KOG3941 Intermediate in Toll s 95.9 0.064 1.4E-06 46.2 8.6 113 70-182 50-185 (406)
237 COG4105 ComL DNA uptake lipopr 95.8 1.1 2.3E-05 38.6 20.5 58 399-456 173-233 (254)
238 COG5107 RNA14 Pre-mRNA 3'-end 95.8 1.7 3.7E-05 40.5 26.3 377 73-456 28-531 (660)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.062 1.3E-06 50.0 8.8 97 323-424 73-176 (453)
240 COG1729 Uncharacterized protei 95.6 0.12 2.7E-06 44.5 9.4 58 399-456 184-244 (262)
241 PF04053 Coatomer_WDAD: Coatom 95.5 0.5 1.1E-05 45.1 14.2 159 94-286 269-429 (443)
242 KOG1941 Acetylcholine receptor 95.4 0.43 9.4E-06 42.9 12.2 21 401-421 214-234 (518)
243 PF04053 Coatomer_WDAD: Coatom 95.1 0.85 1.8E-05 43.6 14.4 75 336-423 329-403 (443)
244 KOG0543 FKBP-type peptidyl-pro 95.0 0.12 2.6E-06 47.1 7.8 67 394-460 258-324 (397)
245 smart00299 CLH Clathrin heavy 94.9 1.4 3.1E-05 34.6 15.5 86 89-182 10-95 (140)
246 KOG4555 TPR repeat-containing 94.9 0.29 6.3E-06 37.0 8.3 87 335-424 53-146 (175)
247 smart00299 CLH Clathrin heavy 94.8 1.5 3.2E-05 34.4 14.1 88 122-213 8-95 (140)
248 PF13428 TPR_14: Tetratricopep 94.7 0.024 5.2E-07 34.2 1.9 36 428-463 2-37 (44)
249 KOG1585 Protein required for f 94.6 2.3 5.1E-05 36.2 13.8 20 296-315 196-215 (308)
250 PRK11906 transcriptional regul 94.6 0.46 9.9E-06 44.6 10.8 160 291-453 252-433 (458)
251 COG0457 NrfG FOG: TPR repeat [ 94.6 2.6 5.5E-05 35.9 26.5 196 223-424 60-267 (291)
252 COG1729 Uncharacterized protei 94.4 0.51 1.1E-05 40.9 9.8 24 331-354 184-207 (262)
253 PF02259 FAT: FAT domain; Int 94.3 4.4 9.6E-05 37.6 19.2 66 288-353 144-212 (352)
254 COG3118 Thioredoxin domain-con 94.3 3.5 7.5E-05 36.4 15.6 145 299-445 143-290 (304)
255 PF13512 TPR_18: Tetratricopep 94.3 1.7 3.7E-05 33.9 11.6 51 337-387 22-73 (142)
256 PF07079 DUF1347: Protein of u 94.1 5.3 0.00011 37.5 29.7 370 36-419 67-521 (549)
257 KOG1920 IkappaB kinase complex 93.9 10 0.00022 40.2 20.4 53 367-419 971-1025(1265)
258 PRK15331 chaperone protein Sic 93.9 0.4 8.7E-06 38.2 7.7 82 133-215 49-133 (165)
259 PRK09687 putative lyase; Provi 93.7 5 0.00011 35.9 25.1 135 258-403 141-277 (280)
260 PF07719 TPR_2: Tetratricopept 93.6 0.27 5.8E-06 27.3 4.8 31 395-425 3-33 (34)
261 KOG2114 Vacuolar assembly/sort 93.6 5.3 0.00012 40.4 16.1 177 224-419 336-516 (933)
262 TIGR02561 HrpB1_HrpK type III 93.6 0.72 1.6E-05 36.0 8.3 79 362-442 8-93 (153)
263 KOG1258 mRNA processing protei 93.5 7.9 0.00017 37.7 24.4 125 88-215 47-179 (577)
264 PF00515 TPR_1: Tetratricopept 93.4 0.21 4.5E-06 27.8 4.1 32 394-425 2-33 (34)
265 COG4785 NlpI Lipoprotein NlpI, 93.2 4.4 9.6E-05 34.0 13.7 159 291-457 100-267 (297)
266 PF10300 DUF3808: Protein of u 93.2 8.7 0.00019 37.3 22.3 157 89-248 191-373 (468)
267 COG4649 Uncharacterized protei 93.2 1.8 3.9E-05 34.7 10.0 21 265-285 173-193 (221)
268 KOG1920 IkappaB kinase complex 93.1 14 0.0003 39.3 19.0 30 153-183 788-819 (1265)
269 COG0457 NrfG FOG: TPR repeat [ 93.0 5.1 0.00011 34.0 25.2 196 259-456 59-265 (291)
270 PF09205 DUF1955: Domain of un 92.9 3.3 7.1E-05 31.7 12.1 60 294-354 90-149 (161)
271 PF13176 TPR_7: Tetratricopept 92.9 0.2 4.2E-06 28.6 3.5 26 429-454 1-26 (36)
272 PRK11906 transcriptional regul 92.9 7.7 0.00017 36.8 15.3 152 263-419 257-433 (458)
273 PF09613 HrpB1_HrpK: Bacterial 92.7 1 2.2E-05 35.8 8.3 81 362-442 8-93 (160)
274 PF07035 Mic1: Colon cancer-as 92.5 4.1 8.8E-05 32.9 11.6 130 107-248 15-146 (167)
275 KOG4234 TPR repeat-containing 92.5 0.52 1.1E-05 38.7 6.4 99 335-433 105-208 (271)
276 PF04184 ST7: ST7 protein; In 92.4 6 0.00013 37.7 14.0 58 366-423 264-325 (539)
277 PF00637 Clathrin: Region in C 92.4 0.079 1.7E-06 42.0 1.9 82 128-212 14-95 (143)
278 PF02259 FAT: FAT domain; Int 92.3 9.4 0.0002 35.4 17.9 65 392-456 145-213 (352)
279 KOG2066 Vacuolar assembly/sort 92.2 14 0.00031 37.2 21.0 49 364-412 650-709 (846)
280 PF13170 DUF4003: Protein of u 92.2 5.2 0.00011 36.1 13.2 131 306-438 78-227 (297)
281 COG3629 DnrI DNA-binding trans 92.1 0.77 1.7E-05 40.4 7.6 60 362-421 154-215 (280)
282 PF13176 TPR_7: Tetratricopept 92.1 0.38 8.3E-06 27.3 4.0 28 395-422 1-28 (36)
283 COG4105 ComL DNA uptake lipopr 92.0 7.5 0.00016 33.6 19.5 62 366-427 172-238 (254)
284 KOG1941 Acetylcholine receptor 91.8 9.6 0.00021 34.7 13.8 126 295-420 127-273 (518)
285 KOG4555 TPR repeat-containing 91.6 0.61 1.3E-05 35.3 5.5 91 369-459 51-147 (175)
286 PF13170 DUF4003: Protein of u 91.5 5.2 0.00011 36.1 12.5 46 203-248 78-129 (297)
287 PF08631 SPO22: Meiosis protei 91.5 10 0.00022 34.0 23.3 158 292-453 86-272 (278)
288 PF04097 Nic96: Nup93/Nic96; 91.3 18 0.00039 36.6 19.8 63 87-151 113-182 (613)
289 PF07035 Mic1: Colon cancer-as 91.3 6.8 0.00015 31.7 12.8 100 207-316 14-115 (167)
290 KOG2114 Vacuolar assembly/sort 91.3 19 0.00041 36.8 27.0 174 55-248 338-516 (933)
291 PF02284 COX5A: Cytochrome c o 91.3 3.3 7.2E-05 29.9 8.6 71 297-369 15-87 (108)
292 KOG2610 Uncharacterized conser 91.2 2.8 6.1E-05 37.5 10.0 115 337-453 115-235 (491)
293 PF00637 Clathrin: Region in C 91.1 0.31 6.7E-06 38.5 4.0 84 92-182 13-96 (143)
294 PF10602 RPN7: 26S proteasome 91.1 1.5 3.3E-05 36.0 8.1 94 87-182 37-139 (177)
295 PF11207 DUF2989: Protein of u 91.0 3.4 7.5E-05 34.3 9.8 77 202-279 121-198 (203)
296 KOG0890 Protein kinase of the 90.7 38 0.00082 39.2 23.2 313 127-458 1389-1733(2382)
297 COG3629 DnrI DNA-binding trans 90.6 3.2 6.9E-05 36.7 9.9 56 261-316 155-213 (280)
298 PF04184 ST7: ST7 protein; In 90.6 16 0.00036 34.9 17.9 56 296-351 265-321 (539)
299 COG2909 MalT ATP-dependent tra 90.3 24 0.00052 36.4 19.3 190 270-463 426-654 (894)
300 PF09613 HrpB1_HrpK: Bacterial 90.2 8.1 0.00018 30.8 12.2 17 371-387 54-70 (160)
301 PF10602 RPN7: 26S proteasome 90.2 5.9 0.00013 32.6 10.8 59 190-248 39-99 (177)
302 PHA02875 ankyrin repeat protei 90.1 18 0.00039 34.6 16.7 54 268-325 174-230 (413)
303 PF10345 Cohesin_load: Cohesin 90.1 23 0.00051 35.9 22.9 183 271-454 373-604 (608)
304 PF13181 TPR_8: Tetratricopept 90.0 0.77 1.7E-05 25.4 4.0 30 395-424 3-32 (34)
305 COG3118 Thioredoxin domain-con 89.3 15 0.00032 32.6 17.7 117 231-353 143-264 (304)
306 PRK15180 Vi polysaccharide bio 89.0 6.7 0.00014 37.0 10.9 127 300-430 299-428 (831)
307 KOG4570 Uncharacterized conser 88.7 5.2 0.00011 35.6 9.5 100 253-354 58-164 (418)
308 PF07721 TPR_4: Tetratricopept 88.6 0.7 1.5E-05 23.9 2.8 23 429-451 3-25 (26)
309 PF07719 TPR_2: Tetratricopept 88.5 0.61 1.3E-05 25.8 2.8 31 428-458 2-32 (34)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 7.5 0.00016 27.9 8.6 63 305-369 22-84 (103)
311 COG2976 Uncharacterized protei 88.2 8.8 0.00019 31.7 10.0 88 369-457 97-189 (207)
312 COG2909 MalT ATP-dependent tra 87.7 37 0.00079 35.1 25.7 215 233-452 426-684 (894)
313 cd00923 Cyt_c_Oxidase_Va Cytoc 87.7 3.3 7.1E-05 29.6 6.3 44 205-248 25-68 (103)
314 COG3947 Response regulator con 87.6 19 0.00042 31.8 14.3 60 395-454 281-340 (361)
315 PF00515 TPR_1: Tetratricopept 87.5 1 2.2E-05 24.9 3.3 31 428-458 2-32 (34)
316 PF11207 DUF2989: Protein of u 86.9 6.4 0.00014 32.7 8.6 73 103-176 123-198 (203)
317 PF13174 TPR_6: Tetratricopept 86.7 1.7 3.7E-05 23.6 4.0 26 399-424 6-31 (33)
318 KOG4570 Uncharacterized conser 86.7 5.7 0.00012 35.4 8.6 93 292-387 66-161 (418)
319 COG1747 Uncharacterized N-term 86.6 32 0.00069 33.2 21.9 158 262-426 69-238 (711)
320 TIGR02561 HrpB1_HrpK type III 86.6 6.8 0.00015 30.7 8.1 78 325-404 7-88 (153)
321 TIGR02508 type_III_yscG type I 86.5 10 0.00022 27.4 8.5 87 137-227 21-107 (115)
322 PF13374 TPR_10: Tetratricopep 86.4 1.3 2.7E-05 25.8 3.5 27 429-455 4-30 (42)
323 KOG0276 Vesicle coat complex C 86.1 19 0.00041 35.3 12.3 99 301-418 648-746 (794)
324 COG4455 ImpE Protein of avirul 86.1 5.4 0.00012 33.5 7.8 77 190-267 4-80 (273)
325 KOG0276 Vesicle coat complex C 86.0 9.3 0.0002 37.3 10.3 150 168-351 598-747 (794)
326 PF13431 TPR_17: Tetratricopep 85.9 1.1 2.4E-05 25.1 2.7 24 153-176 10-33 (34)
327 PF13374 TPR_10: Tetratricopep 85.7 2.2 4.9E-05 24.7 4.3 29 393-421 2-30 (42)
328 COG4785 NlpI Lipoprotein NlpI, 85.4 21 0.00047 30.1 13.2 159 152-319 94-266 (297)
329 PF02284 COX5A: Cytochrome c o 84.9 13 0.00028 27.1 9.0 48 388-435 40-87 (108)
330 COG4455 ImpE Protein of avirul 84.8 4.6 0.0001 33.9 6.8 73 364-436 4-81 (273)
331 COG3947 Response regulator con 84.4 29 0.00063 30.8 14.2 70 293-363 282-355 (361)
332 PF13181 TPR_8: Tetratricopept 84.4 2.1 4.6E-05 23.5 3.6 28 429-456 3-30 (34)
333 COG4649 Uncharacterized protei 84.0 21 0.00046 28.9 13.0 133 84-217 57-197 (221)
334 PF13174 TPR_6: Tetratricopept 83.9 0.99 2.2E-05 24.6 2.0 30 429-458 2-31 (33)
335 TIGR03504 FimV_Cterm FimV C-te 83.7 1.8 4E-05 25.9 3.1 26 432-457 4-29 (44)
336 KOG4648 Uncharacterized conser 82.5 2.9 6.3E-05 37.5 5.1 92 333-427 105-199 (536)
337 PF13762 MNE1: Mitochondrial s 82.2 19 0.00041 28.3 9.0 79 159-237 42-130 (145)
338 KOG4279 Serine/threonine prote 81.8 32 0.0007 34.8 12.1 183 239-426 180-399 (1226)
339 COG1747 Uncharacterized N-term 81.7 52 0.0011 31.8 19.4 48 340-387 184-231 (711)
340 PF10366 Vps39_1: Vacuolar sor 79.8 19 0.00042 26.7 8.1 43 66-114 25-67 (108)
341 KOG1464 COP9 signalosome, subu 79.6 42 0.00091 29.4 16.9 225 190-421 68-331 (440)
342 KOG1258 mRNA processing protei 79.4 68 0.0015 31.6 29.5 378 53-441 47-489 (577)
343 PF07163 Pex26: Pex26 protein; 79.0 23 0.0005 31.2 9.2 88 193-282 89-181 (309)
344 KOG4648 Uncharacterized conser 78.9 8 0.00017 34.9 6.6 93 297-393 104-198 (536)
345 TIGR02508 type_III_yscG type I 78.8 22 0.00048 25.8 9.4 87 238-330 21-107 (115)
346 PF06552 TOM20_plant: Plant sp 78.7 17 0.00037 29.7 7.9 49 388-437 63-123 (186)
347 smart00028 TPR Tetratricopepti 78.2 5.9 0.00013 20.5 4.1 27 396-422 4-30 (34)
348 PRK10941 hypothetical protein; 78.2 14 0.0003 32.8 8.0 63 396-458 184-246 (269)
349 PF09986 DUF2225: Uncharacteri 77.9 17 0.00038 30.9 8.4 65 395-459 120-197 (214)
350 KOG1550 Extracellular protein 77.9 80 0.0017 31.7 20.3 46 103-149 229-277 (552)
351 PF13934 ELYS: Nuclear pore co 77.7 39 0.00084 29.1 10.5 21 367-387 114-134 (226)
352 PF14853 Fis1_TPR_C: Fis1 C-te 77.6 7.5 0.00016 24.4 4.5 31 398-428 6-36 (53)
353 PF07163 Pex26: Pex26 protein; 77.6 20 0.00043 31.6 8.4 90 90-179 87-181 (309)
354 KOG1550 Extracellular protein 77.5 82 0.0018 31.6 15.7 110 70-183 228-355 (552)
355 PF10345 Cohesin_load: Cohesin 76.8 91 0.002 31.7 30.9 49 337-385 373-428 (608)
356 KOG0991 Replication factor C, 76.1 50 0.0011 28.4 14.0 119 264-387 135-264 (333)
357 KOG1464 COP9 signalosome, subu 76.0 54 0.0012 28.8 17.3 184 199-382 39-252 (440)
358 PRK09687 putative lyase; Provi 75.3 61 0.0013 29.0 28.1 80 84-169 35-118 (280)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 75.1 28 0.00061 26.7 8.1 42 411-452 81-124 (126)
360 PF04910 Tcf25: Transcriptiona 73.3 81 0.0018 29.5 13.8 64 392-455 99-167 (360)
361 TIGR03504 FimV_Cterm FimV C-te 73.2 9.8 0.00021 22.8 4.0 24 296-319 5-28 (44)
362 PF09477 Type_III_YscG: Bacter 73.1 35 0.00075 25.2 7.8 79 136-217 21-99 (116)
363 KOG0890 Protein kinase of the 72.8 2E+02 0.0044 33.9 24.1 146 91-245 1388-1541(2382)
364 PF10579 Rapsyn_N: Rapsyn N-te 72.7 12 0.00027 25.6 4.8 46 337-382 18-64 (80)
365 COG2976 Uncharacterized protei 72.5 55 0.0012 27.2 13.7 89 230-320 97-189 (207)
366 PHA02875 ankyrin repeat protei 72.5 72 0.0016 30.5 12.2 77 97-181 10-90 (413)
367 KOG4234 TPR repeat-containing 72.3 57 0.0012 27.3 9.3 93 298-394 103-202 (271)
368 PF04097 Nic96: Nup93/Nic96; 72.2 1.2E+02 0.0026 30.9 16.2 86 297-387 265-353 (613)
369 PF13929 mRNA_stabil: mRNA sta 71.5 75 0.0016 28.4 14.2 62 219-282 199-261 (292)
370 smart00386 HAT HAT (Half-A-TPR 71.1 10 0.00022 20.1 3.8 30 407-436 1-30 (33)
371 KOG4077 Cytochrome c oxidase, 70.9 24 0.00053 26.8 6.4 42 207-248 69-110 (149)
372 COG5159 RPN6 26S proteasome re 70.9 61 0.0013 28.8 9.7 33 296-328 9-41 (421)
373 PRK15180 Vi polysaccharide bio 70.4 40 0.00086 32.2 9.1 128 269-401 299-433 (831)
374 PF11846 DUF3366: Domain of un 70.1 22 0.00047 29.7 7.1 30 358-387 141-170 (193)
375 KOG4077 Cytochrome c oxidase, 69.1 25 0.00055 26.7 6.2 60 308-369 67-126 (149)
376 cd00280 TRFH Telomeric Repeat 68.9 54 0.0012 27.0 8.4 19 164-182 119-137 (200)
377 PF10366 Vps39_1: Vacuolar sor 68.0 29 0.00064 25.7 6.5 27 292-318 41-67 (108)
378 PF10579 Rapsyn_N: Rapsyn N-te 67.5 13 0.00027 25.6 4.0 45 405-449 18-65 (80)
379 PRK13342 recombination factor 66.8 1.2E+02 0.0027 29.0 13.8 44 189-232 229-275 (413)
380 PF11846 DUF3366: Domain of un 66.8 28 0.0006 29.1 7.1 37 388-424 139-175 (193)
381 KOG4642 Chaperone-dependent E3 65.9 23 0.00049 30.5 6.0 116 335-453 20-143 (284)
382 KOG2422 Uncharacterized conser 65.4 1.5E+02 0.0032 29.4 12.2 121 302-423 250-408 (665)
383 cd08819 CARD_MDA5_2 Caspase ac 65.0 35 0.00075 24.1 5.9 38 168-206 48-85 (88)
384 KOG2396 HAT (Half-A-TPR) repea 64.6 1.4E+02 0.0031 28.9 20.3 296 65-394 261-565 (568)
385 KOG3364 Membrane protein invol 64.1 15 0.00032 28.4 4.2 70 358-427 29-105 (149)
386 KOG3807 Predicted membrane pro 63.7 66 0.0014 29.2 8.7 18 301-318 286-303 (556)
387 PF14561 TPR_20: Tetratricopep 63.5 28 0.00062 24.8 5.5 53 392-444 21-75 (90)
388 PF12862 Apc5: Anaphase-promot 63.2 26 0.00057 25.1 5.5 53 403-455 8-69 (94)
389 KOG4507 Uncharacterized conser 63.0 37 0.00081 33.3 7.6 134 322-458 568-707 (886)
390 PF04190 DUF410: Protein of un 62.3 1.1E+02 0.0024 27.0 17.3 161 168-354 2-170 (260)
391 PF11848 DUF3368: Domain of un 61.1 27 0.00058 21.4 4.4 33 97-129 13-45 (48)
392 PF09670 Cas_Cas02710: CRISPR- 61.1 1.5E+02 0.0032 28.0 12.3 18 302-319 143-160 (379)
393 PRK11619 lytic murein transgly 60.9 2E+02 0.0044 29.5 35.8 81 368-448 414-497 (644)
394 KOG2066 Vacuolar assembly/sort 60.8 2.1E+02 0.0045 29.6 24.8 74 158-234 394-467 (846)
395 cd00280 TRFH Telomeric Repeat 60.8 31 0.00067 28.3 5.7 62 69-133 84-155 (200)
396 KOG0687 26S proteasome regulat 60.4 1.4E+02 0.0029 27.3 12.5 18 273-290 36-53 (393)
397 PF11838 ERAP1_C: ERAP1-like C 60.0 1.4E+02 0.003 27.3 18.7 55 367-421 175-229 (324)
398 PHA03100 ankyrin repeat protei 59.9 1.8E+02 0.0038 28.4 14.3 12 441-452 430-441 (480)
399 KOG2471 TPR repeat-containing 59.7 1.7E+02 0.0038 28.3 11.9 103 267-372 248-380 (696)
400 PRK10564 maltose regulon perip 59.0 21 0.00046 31.8 5.0 45 288-332 254-299 (303)
401 PRK12798 chemotaxis protein; R 58.7 1.7E+02 0.0036 27.8 22.5 186 272-458 125-326 (421)
402 KOG1586 Protein required for f 58.0 1.3E+02 0.0027 26.1 16.1 90 339-428 128-230 (288)
403 PF11838 ERAP1_C: ERAP1-like C 57.7 1.5E+02 0.0033 27.0 15.9 28 69-96 55-83 (324)
404 KOG1498 26S proteasome regulat 57.3 1.7E+02 0.0037 27.4 15.6 190 254-468 47-253 (439)
405 PF14689 SPOB_a: Sensor_kinase 57.1 22 0.00049 23.1 3.8 19 367-385 29-47 (62)
406 PRK10564 maltose regulon perip 56.7 23 0.00051 31.6 4.9 41 189-229 259-299 (303)
407 PF11848 DUF3368: Domain of un 55.7 45 0.00098 20.3 5.2 33 301-333 13-45 (48)
408 KOG4567 GTPase-activating prot 55.5 1.4E+02 0.003 26.9 9.2 43 141-183 263-305 (370)
409 smart00777 Mad3_BUB1_I Mad3/BU 55.0 94 0.002 23.8 8.0 40 412-451 82-123 (125)
410 COG4259 Uncharacterized protei 55.0 50 0.0011 23.9 5.3 40 413-452 57-97 (121)
411 PRK13800 putative oxidoreducta 54.9 3.1E+02 0.0066 29.7 23.3 258 174-455 622-880 (897)
412 PF07575 Nucleopor_Nup85: Nup8 54.2 2.5E+02 0.0053 28.4 16.4 59 53-112 115-174 (566)
413 COG5187 RPN7 26S proteasome re 54.0 1.6E+02 0.0036 26.3 11.7 23 363-385 117-139 (412)
414 COG5191 Uncharacterized conser 53.8 30 0.00064 31.0 5.0 78 358-435 104-184 (435)
415 cd08819 CARD_MDA5_2 Caspase ac 53.2 79 0.0017 22.4 6.8 35 272-307 49-83 (88)
416 TIGR01503 MthylAspMut_E methyl 52.8 1.7E+02 0.0036 28.2 9.9 78 68-151 28-116 (480)
417 PF12862 Apc5: Anaphase-promot 52.2 75 0.0016 22.7 6.3 52 372-423 9-71 (94)
418 PF06552 TOM20_plant: Plant sp 51.8 96 0.0021 25.5 7.2 27 307-335 97-123 (186)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 51.7 1.1E+02 0.0023 23.5 8.0 42 104-145 81-123 (126)
420 KOG4507 Uncharacterized conser 51.5 59 0.0013 32.0 6.9 98 337-435 619-718 (886)
421 KOG0545 Aryl-hydrocarbon recep 51.5 69 0.0015 27.8 6.6 93 334-426 187-297 (329)
422 PF04034 DUF367: Domain of unk 51.2 1.1E+02 0.0024 23.4 7.7 56 363-418 68-124 (127)
423 KOG1586 Protein required for f 51.0 1.7E+02 0.0036 25.4 17.6 15 337-351 166-180 (288)
424 PF14689 SPOB_a: Sensor_kinase 51.0 39 0.00085 22.0 4.2 25 328-352 26-50 (62)
425 cd08326 CARD_CASP9 Caspase act 50.4 65 0.0014 22.6 5.4 38 168-205 42-79 (84)
426 KOG4642 Chaperone-dependent E3 49.7 1.8E+02 0.0038 25.4 10.0 114 300-418 20-142 (284)
427 COG4976 Predicted methyltransf 49.5 38 0.00082 29.0 4.7 58 371-428 5-64 (287)
428 PF11663 Toxin_YhaV: Toxin wit 48.1 24 0.00053 27.2 3.2 33 301-335 106-138 (140)
429 COG0735 Fur Fe2+/Zn2+ uptake r 47.6 95 0.0021 24.5 6.7 60 110-170 10-69 (145)
430 KOG2300 Uncharacterized conser 47.5 2.8E+02 0.006 27.0 27.2 363 92-455 13-473 (629)
431 PF04762 IKI3: IKI3 family; I 47.2 4.1E+02 0.0088 28.8 13.2 28 261-288 814-843 (928)
432 COG0735 Fur Fe2+/Zn2+ uptake r 47.1 1.1E+02 0.0024 24.2 7.0 66 70-136 5-70 (145)
433 PRK13800 putative oxidoreducta 46.7 4.1E+02 0.0089 28.7 25.1 19 324-342 788-806 (897)
434 PF09477 Type_III_YscG: Bacter 46.7 1.2E+02 0.0026 22.5 8.8 51 268-320 49-99 (116)
435 PF07575 Nucleopor_Nup85: Nup8 45.7 36 0.00078 34.2 5.0 59 120-180 404-462 (566)
436 KOG1308 Hsp70-interacting prot 45.7 17 0.00037 33.0 2.4 118 336-456 125-244 (377)
437 PF13762 MNE1: Mitochondrial s 45.2 1.5E+02 0.0033 23.4 11.2 77 262-338 42-128 (145)
438 PF04190 DUF410: Protein of un 45.1 2.2E+02 0.0048 25.2 15.4 82 359-456 88-170 (260)
439 PF09670 Cas_Cas02710: CRISPR- 44.8 2.8E+02 0.006 26.3 10.4 56 94-150 139-198 (379)
440 KOG3364 Membrane protein invol 44.8 1.5E+02 0.0032 23.2 7.0 69 322-392 29-103 (149)
441 PF14669 Asp_Glu_race_2: Putat 44.5 1.9E+02 0.0041 24.2 12.9 99 175-283 95-205 (233)
442 PF07064 RIC1: RIC1; InterPro 43.8 2.3E+02 0.005 25.0 14.3 88 364-457 156-250 (258)
443 KOG0292 Vesicle coat complex C 43.3 36 0.00079 35.1 4.4 46 373-421 655-700 (1202)
444 COG2178 Predicted RNA-binding 43.1 2E+02 0.0043 24.1 8.7 18 438-455 132-149 (204)
445 PF12069 DUF3549: Protein of u 43.0 2.7E+02 0.0059 25.7 12.8 87 265-354 172-259 (340)
446 COG5187 RPN7 26S proteasome re 42.9 1.6E+02 0.0035 26.3 7.7 99 359-457 79-185 (412)
447 KOG0686 COP9 signalosome, subu 42.8 3E+02 0.0065 26.1 13.0 59 158-216 152-216 (466)
448 PF06957 COPI_C: Coatomer (COP 42.6 1.8E+02 0.004 27.8 8.6 39 388-426 293-333 (422)
449 PF11817 Foie-gras_1: Foie gra 42.5 1.1E+02 0.0024 26.8 7.0 21 367-387 184-204 (247)
450 PF10255 Paf67: RNA polymerase 42.4 1.7E+02 0.0036 27.9 8.3 57 365-421 126-192 (404)
451 PF14863 Alkyl_sulf_dimr: Alky 41.8 1.1E+02 0.0024 24.1 6.1 62 377-441 57-118 (141)
452 TIGR03581 EF_0839 conserved hy 41.7 1.5E+02 0.0034 25.1 7.0 78 377-454 137-235 (236)
453 COG5108 RPO41 Mitochondrial DN 41.7 1.4E+02 0.003 30.1 7.8 73 295-371 33-113 (1117)
454 PRK11639 zinc uptake transcrip 41.6 1.4E+02 0.0029 24.4 6.9 45 91-135 30-74 (169)
455 KOG0686 COP9 signalosome, subu 41.5 3.2E+02 0.0068 25.9 13.3 57 261-317 152-214 (466)
456 PF04090 RNA_pol_I_TF: RNA pol 41.0 2.2E+02 0.0047 24.0 8.6 117 290-423 41-169 (199)
457 KOG2297 Predicted translation 39.7 2.9E+02 0.0063 25.0 9.5 194 105-318 186-399 (412)
458 PRK10941 hypothetical protein; 39.4 2.8E+02 0.006 24.7 10.4 75 294-370 185-260 (269)
459 cd08332 CARD_CASP2 Caspase act 39.4 1.1E+02 0.0025 21.7 5.4 34 169-202 47-80 (90)
460 PRK09857 putative transposase; 39.3 2.2E+02 0.0047 25.8 8.5 63 397-459 210-272 (292)
461 KOG4567 GTPase-activating prot 38.5 3.1E+02 0.0066 24.9 10.0 41 208-248 264-304 (370)
462 COG5159 RPN6 26S proteasome re 38.5 2.9E+02 0.0064 24.7 12.7 54 366-419 130-191 (421)
463 PF11663 Toxin_YhaV: Toxin wit 38.3 27 0.00059 26.9 2.2 33 97-131 106-138 (140)
464 PF11817 Foie-gras_1: Foie gra 38.1 1.2E+02 0.0025 26.6 6.5 18 93-110 17-34 (247)
465 cd07153 Fur_like Ferric uptake 38.0 78 0.0017 23.6 4.8 45 92-136 6-50 (116)
466 PF01347 Vitellogenin_N: Lipop 38.0 4.5E+02 0.0098 26.8 17.7 44 171-214 360-405 (618)
467 KOG0376 Serine-threonine phosp 37.3 29 0.00063 33.0 2.7 94 331-427 10-106 (476)
468 PF10155 DUF2363: Uncharacteri 36.7 2E+02 0.0042 22.2 8.7 93 89-182 21-124 (126)
469 PF13929 mRNA_stabil: mRNA sta 36.6 3.2E+02 0.0069 24.6 22.4 61 356-416 197-261 (292)
470 KOG0991 Replication factor C, 35.6 3E+02 0.0065 24.0 10.5 47 279-326 228-274 (333)
471 PF13934 ELYS: Nuclear pore co 35.0 3E+02 0.0064 23.8 12.8 70 331-404 114-183 (226)
472 PF04762 IKI3: IKI3 family; I 35.0 6.2E+02 0.014 27.5 14.7 110 327-452 814-926 (928)
473 KOG0551 Hsp90 co-chaperone CNS 34.9 2.1E+02 0.0045 26.3 7.2 43 404-446 130-172 (390)
474 PF14853 Fis1_TPR_C: Fis1 C-te 34.5 1.2E+02 0.0026 19.1 4.7 30 193-224 7-36 (53)
475 PF12926 MOZART2: Mitotic-spin 34.5 1.7E+02 0.0036 20.7 7.1 43 107-149 29-71 (88)
476 PF11123 DNA_Packaging_2: DNA 34.3 1.5E+02 0.0032 20.1 4.8 49 408-456 12-74 (82)
477 PLN03192 Voltage-dependent pot 34.1 4.1E+02 0.0089 28.3 10.9 197 141-349 476-676 (823)
478 COG5108 RPO41 Mitochondrial DN 33.6 5.4E+02 0.012 26.3 11.5 49 227-275 33-81 (1117)
479 TIGR02270 conserved hypothetic 33.5 4.4E+02 0.0095 25.3 23.6 233 93-351 45-278 (410)
480 PF09454 Vps23_core: Vps23 cor 33.1 74 0.0016 21.0 3.3 45 87-132 9-53 (65)
481 smart00804 TAP_C C-terminal do 33.0 38 0.00082 22.2 1.9 22 100-121 39-61 (63)
482 COG0819 TenA Putative transcri 32.0 3.3E+02 0.0071 23.4 7.9 54 81-134 104-168 (218)
483 PRK11639 zinc uptake transcrip 31.8 1.5E+02 0.0033 24.1 5.7 61 213-276 17-77 (169)
484 PF10255 Paf67: RNA polymerase 31.7 1.4E+02 0.003 28.4 6.1 129 326-460 123-274 (404)
485 PRK02287 hypothetical protein; 31.4 2.9E+02 0.0063 22.6 8.1 57 363-419 109-166 (171)
486 PF03943 TAP_C: TAP C-terminal 30.8 31 0.00066 21.5 1.2 23 99-121 26-49 (51)
487 KOG3824 Huntingtin interacting 30.8 99 0.0021 27.8 4.6 57 372-428 127-185 (472)
488 KOG0396 Uncharacterized conser 30.4 4.5E+02 0.0098 24.5 8.7 89 365-453 120-217 (389)
489 PF01475 FUR: Ferric uptake re 30.3 71 0.0015 24.1 3.5 44 91-134 12-55 (120)
490 PRK14956 DNA polymerase III su 30.3 5.4E+02 0.012 25.3 10.9 45 307-353 183-228 (484)
491 PF11768 DUF3312: Protein of u 30.3 5.6E+02 0.012 25.5 10.5 128 193-346 414-544 (545)
492 COG4976 Predicted methyltransf 30.0 1.5E+02 0.0032 25.6 5.3 57 335-393 5-62 (287)
493 cd07153 Fur_like Ferric uptake 29.4 1.4E+02 0.0031 22.1 5.0 45 296-340 6-50 (116)
494 cd08326 CARD_CASP9 Caspase act 29.3 2E+02 0.0044 20.1 5.7 32 237-274 45-76 (84)
495 PF03745 DUF309: Domain of unk 29.3 1.7E+02 0.0036 19.1 5.2 15 373-387 11-25 (62)
496 PF02607 B12-binding_2: B12 bi 28.9 98 0.0021 21.1 3.7 35 97-131 12-46 (79)
497 KOG0545 Aryl-hydrocarbon recep 28.6 3.3E+02 0.0072 23.9 7.1 99 293-393 181-297 (329)
498 PF09454 Vps23_core: Vps23 cor 28.4 1.2E+02 0.0026 20.1 3.7 49 391-439 6-54 (65)
499 PF07064 RIC1: RIC1; InterPro 28.4 4.2E+02 0.0091 23.5 15.5 152 88-248 84-246 (258)
500 PF10475 DUF2450: Protein of u 28.2 2.1E+02 0.0046 25.8 6.6 115 57-177 104-218 (291)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.8e-73 Score=571.16 Aligned_cols=447 Identities=29% Similarity=0.480 Sum_probs=437.7
Q ss_pred ccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHH
Q 012101 16 KSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRL 95 (471)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 95 (471)
..+..++..|++.+..+.+.+++..+...|+.||+. +++.|+.+|++ .|++++|+++|++|+. ||..+||++|.+
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~-~~n~Li~~y~k---~g~~~~A~~lf~~m~~-~~~~t~n~li~~ 198 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY-MMNRVLLMHVK---CGMLIDARRLFDEMPE-RNLASWGTIIGG 198 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH-HHHHHHHHHhc---CCCHHHHHHHHhcCCC-CCeeeHHHHHHH
Confidence 348889999999999999999999999999999999 99999999999 7889999999999986 899999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A 278 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC
Q 012101 176 RKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ 255 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 255 (471)
.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.| .+.|+
T Consensus 279 ~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m--~~~g~ 356 (697)
T PLN03081 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL--IRTGF 356 (697)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH--HHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.||..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++++.+|...|+++.|..+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
++++.+.+|.+..+|..|+++|++.|+|++|.++++.|++.|+.+.||+||++-
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 999999999888999999999999999999999999999999999999999973
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-69 Score=556.65 Aligned_cols=442 Identities=33% Similarity=0.580 Sum_probs=432.7
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT 97 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 97 (471)
+..++.+|++..+.+.+.+++......|+.||.. +||+|+.+|++ .|++++|.++|++|+. ||..+||++|.+|+
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~-~~n~Li~~y~k---~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~ 365 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVS-VCNSLIQMYLS---LGSWGEAEKVFSRMET-KDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchH-HHHHHHHHHHh---cCCHHHHHHHHhhCCC-CCeeeHHHHHHHHH
Confidence 7789999999999999999999999999999999 99999999999 7889999999999985 79999999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 178 VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+|++|.++|+++||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+ .+.|+.+
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~--~~~g~~~ 522 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV--LRTGIGF 522 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH--HHhCCCc
Confidence 99999999999999999999999999999999999986 58999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
+..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|...|+.+.++...+
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceee
Q 012101 418 HLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468 (471)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 468 (471)
++.++.|.+...|..|.+.|+..|+|++|.++.+.|++.|+++.||+||++
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 999999999999999999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.5e-65 Score=522.48 Aligned_cols=432 Identities=24% Similarity=0.359 Sum_probs=379.1
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT 97 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~ 97 (471)
+..+++.|+...++..+.+++......|+.+++. ++|+||.+|++ .|++++|..+|++|+. ||+.+||++|.+|+
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~n~Li~~y~k---~g~~~~A~~lf~~m~~-~d~~s~n~li~~~~ 264 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD-VVNALITMYVK---CGDVVSARLVFDRMPR-RDCISWNAMISGYF 264 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc-hHhHHHHHHhc---CCCHHHHHHHHhcCCC-CCcchhHHHHHHHH
Confidence 6677888888888888888888888888999999 99999999999 7889999999999986 78999999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.+
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 178 VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 178 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+ .+.|+.|
T Consensus 345 vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~--~~~g~~~ 422 (857)
T PLN03077 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA--ERKGLIS 422 (857)
T ss_pred HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH--HHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++
T Consensus 423 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
.|+.+.+.+++..+.+. |+.++..++++||++|+++|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|+
T Consensus 502 ~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 502 IGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999888888888655 77776666666666666666666666666665 5566666666666666666666666666
Q ss_pred HHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhh-cCCCcc
Q 012101 418 HLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMK-HRNLAK 460 (471)
Q Consensus 418 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~ 460 (471)
+|.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.+
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 666555 2244566666666666666666666666665 344443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-62 Score=497.55 Aligned_cols=438 Identities=14% Similarity=0.222 Sum_probs=409.2
Q ss_pred cchhHHHHHHhhhchhhhhHHHHhhhccCC-CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHH
Q 012101 17 SSHPLLHRLCKTHTFRKHVTISAASSFLDT-HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRL 95 (471)
Q Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 95 (471)
.+..++.++++..+++.+..+++.+..-+. .++.. +++.++..|.+ .|.+.+|..+|+.|+. ||..+||.+|.+
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v-~~~~li~~~~~---~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a 446 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI-YHAKFFKACKK---QRAVKEAFRFAKLIRN-PTLSTFNMLMSV 446 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHH---CCCHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 367788889998999999999998887775 45666 88889999999 7889999999999987 999999999999
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC----CCCcchHHHHHHHHHcCCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHH
Q 012101 176 RKVFDENP----ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK--CGFEPDDVTMVSVTSACGSLGDLELALQVHKYVF 249 (471)
Q Consensus 176 ~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 249 (471)
.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M- 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI- 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 99999986 47888999999999999999999999999986 679999999999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 250 QVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.+.++.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.+++++|.+.|+.||.
T Consensus 606 -~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 -HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred -HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 8999999999999999999999999999999999985 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM---PMKANVVIWGCLMGA 402 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~ 402 (471)
.+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++| ++.||..||+.++.+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999765 99999999999999999999999999999999 899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCchHHHHHHHHH----cCC-------------------ChHHHHHHHHHhhcCCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEP-WSDGAYVVLSNIYA----SRG-------------------LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~~ 458 (471)
|++.|+++.|.+++++|.+.+. ++..+|+.++.+|. +++ ..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 9999999999999999999884 34568888876643 221 23679999999999999
Q ss_pred ccCC
Q 012101 459 AKIP 462 (471)
Q Consensus 459 ~~~~ 462 (471)
.|..
T Consensus 844 ~Pd~ 847 (1060)
T PLN03218 844 LPTM 847 (1060)
T ss_pred CCCH
Confidence 7653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-62 Score=495.80 Aligned_cols=438 Identities=16% Similarity=0.210 Sum_probs=407.4
Q ss_pred ccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC---CCchhhHHHH
Q 012101 16 KSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS---YSAAFHWNNI 92 (471)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l 92 (471)
..|..++..|++..+.+.+..++..+...|+.||.. +|++||.+|++ .|+++.|.++|++|.. .||..+||.+
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~-tynsLI~~y~k---~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAK---SGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 347889999999999999999999999999999999 99999999999 7889999999999974 5899999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH--hCCCCCcchHHHHHHHHHhcC
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR--LGLESNEFCESGFISLYSKAG 170 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g 170 (471)
|.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 578999999999999999999
Q ss_pred ChhhHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 171 DFEKARKVFDENPER----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
++++|.++|+.|.+. +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999765 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID----QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
.| .+.|+.|+..+|++++.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|.++|++|.+.|+.
T Consensus 674 eM--~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 674 DA--RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HH--HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99 899999999999999999999999999999999995 499999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----c-------------------CCHHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----A-------------------GLLEE 379 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~ 379 (471)
||..||+.++.+|++.|+++.|.++|++|.+. |+.||..+|+.++..|.+ + +..++
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 99999999999999999999999999999766 999999999999876432 2 22467
Q ss_pred HHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 380 ARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 380 A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
|..+|++| |+.||..||+.++.++++.+....+..+++.+...+ +++..+|+.+++++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999 999999999999988888999999999998876554 45567999999998432 3689999999999
Q ss_pred CCCccCC
Q 012101 456 RNLAKIP 462 (471)
Q Consensus 456 ~~~~~~~ 462 (471)
.|+.+..
T Consensus 909 ~Gi~p~~ 915 (1060)
T PLN03218 909 LGVVPSV 915 (1060)
T ss_pred cCCCCCc
Confidence 9997655
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.8e-57 Score=454.53 Aligned_cols=382 Identities=23% Similarity=0.346 Sum_probs=361.4
Q ss_pred HhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 012101 76 RTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAG-VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 76 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (471)
.+...+.+++..+|+.+|.++.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444555677899999999999999999999999998765 78999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
|..+|+.|+.+|++.|++++|.++|++|+++|+++||+++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (471)
.|+.+.+.+++..+ .+.|+.+|..+|++|+++|+++|++++|.++|++|.++|+.+||++|.+|++.|++++|.++|+
T Consensus 237 ~~~~~~~~~l~~~~--~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 237 LGSARAGQQLHCCV--LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred CCcHHHHHHHHHHH--HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 012101 315 YMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVV 394 (471)
Q Consensus 315 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 394 (471)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|+.||++|+++|++++|.++|++|. .||..
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~ 392 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLI 392 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCee
Confidence 9999999999999999999999999999999999999776 999999999999999999999999999999995 47999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHHhhc-CCCccC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAVMKH-RNLAKI 461 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~ 461 (471)
+|+++|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|+.|.+ .|+.+.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~ 461 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999887 34567899999999999999999999999976 466543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=9.4e-27 Score=244.88 Aligned_cols=420 Identities=11% Similarity=0.042 Sum_probs=206.3
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhC
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRL 99 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~ 99 (471)
........+++.+..+...... ...+++. ++..+...|.+ .|++++|...|++... +.+...+..+...+...
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEK-KQPDNAS-LHNLLGAIYLG---KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-hCCCCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 3334444445544444432211 1222334 56666666665 5556666666655421 23344555555666666
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHh
Q 012101 100 EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVF 179 (471)
Q Consensus 100 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 179 (471)
|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..+...|.+.|++++|.+++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666665543 2244455555555555666666666666555443 333444555555555556666655555
Q ss_pred ccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 180 DENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 180 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
+.+.. .+...|..+...+...|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++.+ .+.. +
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRA--LELK-P 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-C
Confidence 55432 233355555555555555555555555555432 233444555555555555555555555555 3221 2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
.+...+..+...+...|++++|.++++.+.+ .+...+..+...+...|++++|...|+++...+ |+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 2344455555555555555555555555443 233444444455555555555555555554432 22234444444
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~ 411 (471)
++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++ ... ++..+++.+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 455555555555555554432 1233344444444555555555555555544 222 233344444444444444 44
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.+
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4444444444444444444444444444444444444444444433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-25 Score=236.64 Aligned_cols=415 Identities=11% Similarity=-0.028 Sum_probs=282.6
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAP 102 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 102 (471)
+....+.+.+..... +.+...|+....+..+...+.. .|++++|...|+++.. +.+..++..+...+.+.|++
T Consensus 475 ~~~~~~~~~A~~~~~--~a~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 475 YLGKGDLAKAREAFE--KALSIEPDFFPAAANLARIDIQ---EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHhCCCHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCH
Confidence 333444444444433 3333444444366667777776 6667777777776532 34566777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
++|...++++.+.+ +.+...+..+...+.+.|++++|..+++.+.+.. +.+..+|..+...|.+.|++++|.+.|+++
T Consensus 550 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 550 EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777776654 3355566667777777777777777777776543 455667777777777777777777777765
Q ss_pred CC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh
Q 012101 183 PE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 183 ~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
.+ .+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|+++.|.++++.+ .... +.+.
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~ 703 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL--QKQH-PKAA 703 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhC-cCCh
Confidence 42 234467777777777777777777777776653 445667777777777777777777777777 4433 3455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
..+..+...+.+.|++++|...|+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|..
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6667777777777777777777777654 555666667777777777777777777777653 4456666777777777
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.|+.++|.++|+++.+.. +.+...+..+...+...|+ ++|...++++ ...| +..++..+..++...|++++|...
T Consensus 783 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776542 3455667777777777777 6677777776 4344 344666677777777777777777
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
++++.+.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 860 ~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 860 LRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777777777777777777777777777777777765
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2.6e-20 Score=176.42 Aligned_cols=292 Identities=15% Similarity=0.070 Sum_probs=168.7
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~----------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ----------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-----------------
Confidence 4456677777777777777653 2234456666666677777777777776666532111100
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC
Q 012101 175 ARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK 254 (471)
Q Consensus 175 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (471)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+ .+.+
T Consensus 106 -----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~--~~~~ 171 (389)
T PRK11788 106 -----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL--EKLG 171 (389)
T ss_pred -----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH--HHhc
Confidence 00123444445555555555555555554431 233445555555555555555555555555 3322
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 255 QKSD----TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 255 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
..+. ...+..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|.++++++.+.+......+
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 2111 11233444555556666666666655543 2234555566667777777777777777765532222345
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEK- 405 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~- 405 (471)
+..+..+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++++ ...|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 666677777777777777777777543 455555666777777777777777777766 556777777766666553
Q ss_pred --cCCHHHHHHHHHHHHh
Q 012101 406 --FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 406 --~~~~~~a~~~~~~~~~ 421 (471)
.|+.+++..+++++.+
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 4467777777777765
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.3e-18 Score=184.76 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=239.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 3445566666666666655542 1233444445555555666666666666655532 223334444444443 344555
Q ss_pred HHHHhccCCCCC------------cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH
Q 012101 175 ARKVFDENPERK------------LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL 242 (471)
Q Consensus 175 a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 242 (471)
|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 655555443221 1123345566777889999999998888763 334566777888888899999999
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CH---------hhHHHHHHHHHhCCChhHH
Q 012101 243 QVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP----NV---------SSWTSMIVGYAANGLANEA 309 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a 309 (471)
..++.+ .+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.++|
T Consensus 516 ~~l~~a--l~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 516 ALMRRL--AQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHH--HHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 999888 5433 223444445555667788899999988887641 11 1122345677888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P 388 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 388 (471)
..+++. .+++...+..+...+.+.|++++|...|+.+.+.. +.+...+..++..|...|++++|.+.++.. .
T Consensus 593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 998872 24455667778888999999999999999998652 335678889999999999999999999988 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 389 MKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG------AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 389 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
..| +..++..+..++...|++++|.++++++.+..+.++. .+..++..+...|++++|++.|+....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555 4556777888999999999999999999987654432 455678889999999999999998864
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.9e-20 Score=177.44 Aligned_cols=292 Identities=12% Similarity=0.039 Sum_probs=236.0
Q ss_pred HHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHcCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD---DVTMVSVTSACGSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~ 237 (471)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776543 334678888888889999999999988887542222 2467788899999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC------HhhHHHHHHHHHhCCChhHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN------VSSWTSMIVGYAANGLANEA 309 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a 309 (471)
++.|..+|+.+ .+. .+.+..++..++..+.+.|++++|.+.++.+.+ |+ ...+..+...+.+.|++++|
T Consensus 123 ~~~A~~~~~~~--l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 123 LDRAEELFLQL--VDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHH--HcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999 544 345677899999999999999999999999865 22 12456677788999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR--FAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998763 334567778889999999999999999999764 343 456788999999999999999999998
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---CCChHHHHHHHHHhhcCCCccCCC
Q 012101 388 -PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS---RGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 388 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
...|+...+..++..+.+.|++++|..+++++.+..|.+. .+..++..+.. .|+.+++..++++|.++++.+.|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6678877788899999999999999999999999887554 56666665553 569999999999999998888875
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-19 Score=165.64 Aligned_cols=377 Identities=13% Similarity=0.091 Sum_probs=306.3
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
...|.....|+.+.+.+-. .|++++|+..++.+-. +..+.+|..+..++...|+.+.|.+.|.+..+. .|+..
T Consensus 110 r~~~q~ae~ysn~aN~~ke---rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ 184 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKE---RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLY 184 (966)
T ss_pred hccchHHHHHHHHHHHHHH---hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchh
Confidence 3345544577888888877 7889999998887653 346788999999999999999999999888774 46554
Q ss_pred hHHHHHH-HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHH
Q 012101 123 TLPIVLK-ASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLS 198 (471)
Q Consensus 123 ~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~ 198 (471)
...+-+. ..-..|..++|...|.+.++.. +-=...|+.|...+-..|++..|+..|++..+-|.. +|-.|...|.
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH
Confidence 4433333 3345688899999988888753 233467888999999999999999999987765543 7899999999
Q ss_pred cCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDL 277 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 277 (471)
..+.+++|+..|.+.... .|+ ...+..+...|...|.++.|...|++. +..... -...|+.|..++-..|++.+
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykra--l~~~P~-F~~Ay~NlanALkd~G~V~e 338 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRA--LELQPN-FPDAYNNLANALKDKGSVTE 338 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHH--HhcCCC-chHHHhHHHHHHHhccchHH
Confidence 999999999999888765 454 567778888889999999999999988 433221 25689999999999999999
Q ss_pred HHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 278 AYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 278 A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
|++.|++... | ...+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++..
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal- 415 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL- 415 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-
Confidence 9999998775 3 3467888999999999999999999988774 555 4567888889999999999999999987
Q ss_pred hcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 354 VYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 354 ~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
.+.|+. ..|+.+...|...|+.+.|.+.+.+. .+.|.. ..++.|...|...|++.+|++.++...++.|+.+..|
T Consensus 416 --rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 416 --RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred --hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 567875 57888999999999999999999988 888865 5889999999999999999999999999999988888
Q ss_pred HHHHHHH
Q 012101 431 VVLSNIY 437 (471)
Q Consensus 431 ~~l~~~~ 437 (471)
-.++-++
T Consensus 494 cNllh~l 500 (966)
T KOG4626|consen 494 CNLLHCL 500 (966)
T ss_pred hHHHHHH
Confidence 7776654
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.4e-18 Score=171.62 Aligned_cols=390 Identities=12% Similarity=-0.024 Sum_probs=275.8
Q ss_pred HHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 56 TQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 56 ~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
.+-+.+.+ .|+++.|+..|++.- ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...
T Consensus 132 ~~G~~~~~---~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 132 EKGNKAYR---NKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 44455666 677888888887643 34666778888888888888888888888887754 22455677777788888
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC-----------------------------C
Q 012101 135 FALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE-----------------------------R 185 (471)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------------~ 185 (471)
|++++|..-+......+-..+. ....++.-+......+.+...++.-+. .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 8888887777655443211111 111111111111111122222211110 0
Q ss_pred Ccc---hHHHHHHH---HHcCCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 186 KLG---SWNAIIAG---LSQDGRAKEAIDMFIGLKKCG-FEP-DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 186 ~~~---~~~~li~~---~~~~~~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
+.. .+..+... ....+++++|++.|+...+.+ ..| +...+..+...+...|++++|...++.. +... +.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka--l~l~-P~ 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELD-PR 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHcC-CC
Confidence 000 11111111 122467999999999998765 233 4456777788888999999999999998 5443 23
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...|..+...+...|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 456788889999999999999999998765 456788999999999999999999999998863 3346667778888
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHh
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-V-------IWGCLMGACEK 405 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~l~~~~~~ 405 (471)
+.+.|++++|...|+...+.. +.+...++.+...+...|++++|.+.|++. .+.|+. . .++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 999999999999999997642 334678888999999999999999999997 444431 1 12222233445
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|++++|.+++++..+..|.+...+..++.++.+.|++++|.+.|++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 699999999999999999988888999999999999999999999998654
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.1e-18 Score=185.12 Aligned_cols=390 Identities=11% Similarity=0.039 Sum_probs=299.2
Q ss_pred HHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc-chHH---------
Q 012101 58 LSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC-YTLP--------- 125 (471)
Q Consensus 58 l~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~--------- 125 (471)
-..+.. .|++++|+..|++.-. +.+...+..+...+.+.|++++|+..|++..+....... ..+.
T Consensus 276 G~~~~~---~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVD---SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHH---CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 344555 6889999999987643 346788999999999999999999999999876432111 1121
Q ss_pred ---HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHc
Q 012101 126 ---IVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQ 199 (471)
Q Consensus 126 ---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~ 199 (471)
.....+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|++..+. +...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 12345678999999999999999864 455667778889999999999999999986643 3446666777664
Q ss_pred CCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 200 DGRAKEAIDMFIGLKKCGFE--------PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
.++.++|+.+++.+...... .....+..+...+...|++++|.+.+++. ++.. +-+..++..+...|.+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A--l~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR--LALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHH
Confidence 46789999988776433100 01123455667788899999999999998 5543 2356778889999999
Q ss_pred cCChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhccCC
Q 012101 272 CGRMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV---------TFVGVLSACVHGG 339 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~~ 339 (471)
.|++++|...|+++.+ | +...+..+...+...++.++|...++.+......++.. .+......+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999998754 3 44555555556678899999999998865432222221 2234556788899
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
+.++|..+++.- +.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|++.++
T Consensus 588 ~~~eA~~~l~~~------p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQQ------PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999998721 345556778899999999999999999998 5566 56789999999999999999999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 418 HLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+.+..|.++..+..++.++...|++++|.++++++.......+
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99998888888888999999999999999999999987654433
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.6e-18 Score=172.43 Aligned_cols=349 Identities=9% Similarity=-0.051 Sum_probs=271.8
Q ss_pred CchHHHHHHhcccCCC-----CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 012101 68 NQIYAHIIRTHMLHSY-----SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.+++.---.|...+++ .+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.|..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence 4444444444444431 23333556788889999999999999999887533 34455556667778999999999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFE 219 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 219 (471)
.++++.+.. |.+...+..+...+...|++++|.+.+++... | +...+..+...+...|++++|...++.+.....
T Consensus 98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P- 175 (656)
T PRK15174 98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP- 175 (656)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-
Confidence 999999865 55567788888999999999999999988654 3 455788899999999999999999998876632
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHH
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSM 296 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 296 (471)
.+...+..+ ..+...|++++|...++.+ .+....++......+..++.+.|++++|...|++..+ .+...+..+
T Consensus 176 ~~~~a~~~~-~~l~~~g~~~eA~~~~~~~--l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 176 PRGDMIATC-LSFLNKSRLPEDHDLARAL--LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCHHHHHHH-HHHHHcCCHHHHHHHHHHH--HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 233333333 3477889999999999998 6654444455556667889999999999999998765 456778888
Q ss_pred HHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHH
Q 012101 297 IVGYAANGLANE----ALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLL 371 (471)
Q Consensus 297 i~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~ 371 (471)
...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+. .|+ ...+..+..+|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 999999999986 899999988763 335667888889999999999999999999765 344 45677788999
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 372 GRAGLLEEARAMVEGM-PMKANVVI-WGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+.|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++.+..|..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999999999999998 56676544 4445678899999999999999999988764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=2e-19 Score=163.90 Aligned_cols=364 Identities=16% Similarity=0.175 Sum_probs=307.8
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch-HHHHHH
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC-ESGFIS 164 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~ 164 (471)
..+|..+...+-..|++++|+.+++.+.+... -....|..+..++...|+.+.|.+.|...++. .|+... .+.+-.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 46788999999999999999999999998642 25788999999999999999999999998874 455443 333445
Q ss_pred HHHhcCChhhHHHHhccCCC--CCc-chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHH
Q 012101 165 LYSKAGDFEKARKVFDENPE--RKL-GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGSLGDLEL 240 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~ 240 (471)
..-..|++++|...+.+..+ |.. ++|+.|...+-.+|+...|+..|++..+. .|+ ...|..+...|...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 55667999999998877544 332 37999999999999999999999999865 454 5678889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 241 ALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
|...|... .... +-...++..+...|...|.++-|...|++..+ |+ ...|+.|..++-..|++.+|.+.|++..
T Consensus 271 Avs~Y~rA--l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRA--LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHH--HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999887 3322 22356777888889999999999999999876 44 4689999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 012101 318 ESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV- 394 (471)
Q Consensus 318 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 394 (471)
... ..-....+.|...+...|.++.|..+|....+. .|. ...++.|...|-..|++++|..-+++. .++|+..
T Consensus 348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 752 223567888999999999999999999998754 455 456889999999999999999999998 9999864
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.|+.+...|-..|+.+.|.+.+.+....+|.-...++.|...|-..|++.+|+.-++...+-.+.-+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 8999999999999999999999999999998778899999999999999999999999988766533
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=6.5e-17 Score=164.77 Aligned_cols=190 Identities=8% Similarity=-0.031 Sum_probs=145.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 3444567778888777776653 444455566667777888888888888877653 2222233333344445688999
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
|...+++..+. .|+...+..+..++.+.|++++|...+++. ...|+ ...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99888888744 577778888888999999999999999988 66664 55777788889999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 422 LEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..|.++..+..++.++...|++++|+..+++..+..+.
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99988889999999999999999999999998776543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=8e-18 Score=170.99 Aligned_cols=393 Identities=9% Similarity=-0.019 Sum_probs=285.5
Q ss_pred HHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 56 TQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 56 ~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
-.+..... .|+.++|+.++.+... +.+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+..
T Consensus 20 d~~~ia~~---~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 20 DWLQIALW---AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34444555 6778888888887653 2344458889999999999999999999988753 3345566777778889
Q ss_pred cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHH
Q 012101 134 LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMF 210 (471)
Q Consensus 134 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~ 210 (471)
.|++++|...++++.+.. +.+.. +..+..++...|+.++|...+++..+. +...+..+...+...+..++|+..+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999998763 44555 888888899999999999999886543 3345667778888889999999888
Q ss_pred HHHHHCCCCCCH------HHHHHHHHHHc-----CcCCH---HHHHHHHHHHHHhhc-CCCCChh-HHH----HHHHHHH
Q 012101 211 IGLKKCGFEPDD------VTMVSVTSACG-----SLGDL---ELALQVHKYVFQVKS-KQKSDTL-MLN----SLIDMYG 270 (471)
Q Consensus 211 ~~m~~~g~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~ 270 (471)
+.... .|+. .....++.... ..+++ ++|.+.++.+ .+. ...|+.. .+. ..+.++.
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l--l~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL--EALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH--HhhcccCCccchHHHHHHHHHHHHHH
Confidence 76653 2321 11122222222 22234 6778888877 432 1222221 111 1133456
Q ss_pred hcCChHHHHHHHHhcCCCC--Hh--hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhccCCcHHH
Q 012101 271 KCGRMDLAYKVFWEIDQPN--VS--SWTSMIVGYAANGLANEALDCFHYMRESGIRP---NHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~--~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~ 343 (471)
..|++++|+..|+.+.+.+ .. .-..+...|...|++++|...|+++.+..... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 7799999999999988632 11 22235678899999999999999987653111 12345666677889999999
Q ss_pred HHHHHHHhHHhcC----------CCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012101 344 GKHFFEMMKNVYQ----------IEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN 408 (471)
Q Consensus 344 a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 408 (471)
|.+.++.+..... -.|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999875421 0122 124456777888999999999999998 4445 56788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+++|++.++++.+..|.+...+..++..+.+.|++++|+++++++.+..+.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999998888989999999999999999999999876554
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=9.5e-18 Score=166.90 Aligned_cols=353 Identities=9% Similarity=-0.044 Sum_probs=275.6
Q ss_pred HhCCCchHHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 97 TRLEAPKKALDIYIFMSRAG--VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.+..+++.---.|..-.++- -.-+......++..+.+.|+++.|..+++..+... +-+......++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34455554444444332221 11234446667788899999999999999998865 3344555666677788999999
Q ss_pred HHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 175 ARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 175 a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
|.+.|+++.+. +...+..+...+.+.|++++|+..+++..... +.+...+..+..++...|++++|...++.+ .
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~--~ 171 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ--A 171 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH--H
Confidence 99999997643 44578889999999999999999999998762 445667888899999999999999999987 5
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC----CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP----NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
.....+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|...++++.+.. +.+...
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 444333 3333333 3478899999999999987652 23344556778889999999999999999764 335667
Q ss_pred HHHHHHHhccCCcHHH----HHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQE----GKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLM 400 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~ 400 (471)
+..+...+...|++++ |...|+++.+. .| +...+..+...+.+.|++++|...+++. ...|+ ...+..+.
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7778888999999985 89999998754 34 4567889999999999999999999998 55664 55777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++.+.|++++|...++++.+..|.+...+..++.++...|++++|.+.|++..+..+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 99999999999999999999999877666666788899999999999999998877654
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=4.3e-16 Score=158.41 Aligned_cols=404 Identities=9% Similarity=-0.061 Sum_probs=297.3
Q ss_pred hhhhccchhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhH
Q 012101 12 SLRMKSSHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHW 89 (471)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ 89 (471)
+.........++-..-..+.+.+..+.... ....|.+...+..+...+.+ .|++.+|...+++.- .+.+...+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~--~~~~~~~a~~~~~lA~~~~~---~g~~~~A~~~~~~al~~~P~~~~a~ 86 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRY--RVHMQLPARGYAAVAVAYRN---LKQWQNSLTLWQKALSLEPQNDDYQ 86 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 334444566666666667777766555433 33344444368888888888 888999999999853 23456678
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 90 NNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 90 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888999999999999999999998863 33445 7788888999999999999999999865 44556667788888899
Q ss_pred CChhhHHHHhccCCCCCcc--------hHHHHHHHHHc-----CCCh---hHHHHHHHHHHHC-CCCCCHH-HHH----H
Q 012101 170 GDFEKARKVFDENPERKLG--------SWNAIIAGLSQ-----DGRA---KEAIDMFIGLKKC-GFEPDDV-TMV----S 227 (471)
Q Consensus 170 g~~~~a~~~~~~~~~~~~~--------~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ 227 (471)
|..+.|.+.++.... +.. ....++..... .+++ ++|+..++.+.+. ...|+.. .+. .
T Consensus 164 ~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 164 RLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred CChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 999999999988775 211 12223332222 2234 7788899888854 2233321 111 1
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-----HhhHHHHHHH
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQK-SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-----VSSWTSMIVG 299 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~ 299 (471)
.+.++...|+.++|...|+.+ .+.+.+ |+- ....+..+|...|++++|+..|+++.+ |. ......+..+
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~l--l~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRL--KAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHh--hccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 133445779999999999999 666532 322 223357789999999999999998865 22 2345566778
Q ss_pred HHhCCChhHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHH
Q 012101 300 YAANGLANEALDCFHYMRESGI-----------RPNH---VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYG 365 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 365 (471)
+...|++++|..+++++.+... .|+. ..+..+...+...|+.++|++.++++... .+.+...+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~ 397 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRI 397 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8999999999999999987521 2332 23455667788999999999999999765 244567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.+...+...|++++|++.+++. ...|+ ...+......+...|++++|+.+++++.+..|.++.+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 8999999999999999999998 66776 5577777788999999999999999999999988743
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.5e-15 Score=151.74 Aligned_cols=430 Identities=9% Similarity=-0.044 Sum_probs=278.8
Q ss_pred HHHHHHhhhchhhhhHHHHhhhccCCCCChHH-HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHH--HHHHH
Q 012101 21 LLHRLCKTHTFRKHVTISAASSFLDTHEDPAK-IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNI--IRLYT 97 (471)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--i~~~~ 97 (471)
..+.+...+..+...++..+.+.+...|+..+ ++ .++..+.. .|+.++|+..+++...+.+...+..+ ...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~---~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGW---AGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHH---cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 34444444444444555555566666666311 33 66666666 56677777777776533233333333 44666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
..|++++|+++|+++.+... -+...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 67777777777777776542 23455555566677777777777777777654 3444444444444444555555777
Q ss_pred HhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----cCcCCHHH---
Q 012101 178 VFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT------MVSVTSAC-----GSLGDLEL--- 240 (471)
Q Consensus 178 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------~~~li~~~-----~~~~~~~~--- 240 (471)
.++++.+. +...+..+.....+.|-...|+++.++-.+. +.+...- ....++.- ....++..
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 77766533 3335666667777777777777665543211 1111110 11111111 01122323
Q ss_pred HHHHHHHHHHhh--cCCCCChhH----HHHHHHHHHhcCChHHHHHHHHhcCCC----CHhhHHHHHHHHHhCCChhHHH
Q 012101 241 ALQVHKYVFQVK--SKQKSDTLM----LNSLIDMYGKCGRMDLAYKVFWEIDQP----NVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 241 a~~~~~~~~~~~--~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~ 310 (471)
|..-++.+ .. ...++.... .--.+-++...|++.++.+.|+.+..+ ...+-..+..+|...+++++|.
T Consensus 270 ala~~~~l--~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 270 ALADYQNL--LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHH--HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 33333443 22 122222122 223455778889999999999999852 2345567889999999999999
Q ss_pred HHHHHHHHcC-----CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC----------CCCh---hHHHHHHHHHH
Q 012101 311 DCFHYMRESG-----IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI----------EPRF---AHYGCMVDLLG 372 (471)
Q Consensus 311 ~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~p~~---~~~~~li~~~~ 372 (471)
.+++.+.... ..++......|..++...+++++|..+++.+.+.... .|+. ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999987643 1233444578889999999999999999999763210 1221 23445677888
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
..|++.+|++.++++ ...| |......+...+...|.+.+|++.++......|.+..+....+.++...|+|++|.++.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999 4455 78889999999999999999999999999999998889999999999999999999999
Q ss_pred HHhhcCCCcc
Q 012101 451 AVMKHRNLAK 460 (471)
Q Consensus 451 ~~m~~~~~~~ 460 (471)
+...+..+..
T Consensus 508 ~~l~~~~Pe~ 517 (822)
T PRK14574 508 DDVISRSPED 517 (822)
T ss_pred HHHHhhCCCc
Confidence 8887665543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.6e-15 Score=149.99 Aligned_cols=377 Identities=14% Similarity=0.038 Sum_probs=269.3
Q ss_pred hHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHH
Q 012101 35 VTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
.++......+...|++. .|..+...|.+ .|++++|+..++..-. +.+..+|..+-.+|...|++++|+.-|...
T Consensus 145 ~Ai~~y~~al~~~p~~~-~~~n~a~~~~~---l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 145 KAIKLYSKAIECKPDPV-YYSNRAACHNA---LGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHhcCCchH-HHHHHHHHHHH---hCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555556778889988 99999999999 8889999998887542 346678999999999999999999888776
Q ss_pred HHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH-------------HHH------------hCCCCCcchHHHHHHHH-
Q 012101 113 SRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL-------------AVR------------LGLESNEFCESGFISLY- 166 (471)
Q Consensus 113 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-------------~~~------------~~~~~~~~~~~~ll~~~- 166 (471)
...+. .+......++...........+...++. ... .....+...-..++..+
T Consensus 221 ~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 221 CIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 54421 1111111111111110000111111100 000 00000000001111111
Q ss_pred -----HhcCChhhHHHHhccCCCC------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcC
Q 012101 167 -----SKAGDFEKARKVFDENPER------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACGS 234 (471)
Q Consensus 167 -----~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 234 (471)
...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+..
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~ 377 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLE 377 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHH
Confidence 1236789999999876532 2346888888999999999999999999876 454 5678888888999
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
.|++++|...++.+ +... +.+..++..+...+...|++++|...|++..+ .+...+..+...+.+.|++++|+.
T Consensus 378 ~g~~~eA~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 378 LGDPDKAEEDFDKA--LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred CCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998 5543 34577889999999999999999999998865 345677788889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--------hHHHHHHHHHHhcCCHHHHHHH
Q 012101 312 CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--------AHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 312 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~~~g~~~~A~~~ 383 (471)
.+++..+.. +.+...+..+...+...|++++|.+.|+...+. .|+. ..++.....+...|++++|.++
T Consensus 455 ~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 455 TFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999988752 334678888889999999999999999998754 3321 1122222334457999999999
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 384 VEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 384 ~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
+++. .+.|+. ..+..+...+.+.|++++|...|++..++.+.
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9997 666644 57889999999999999999999999988764
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=4.5e-14 Score=141.38 Aligned_cols=384 Identities=11% Similarity=0.039 Sum_probs=280.7
Q ss_pred cCchHHHHHHhcccCC-CCchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHH--HHHHhccCCchHHH
Q 012101 67 LNQIYAHIIRTHMLHS-YSAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD-CYTLPIV--LKASCQLFALEIGR 141 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l--l~~~~~~~~~~~a~ 141 (471)
.|++..|+..|++... .|+.. .-..++..+...|+.++|+..+++.. .|+ ...+..+ ...+...|++++|.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5889999999998754 34431 23388888999999999999999987 333 3334444 45788889999999
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHc--CCChhHHHHHHHHHHHCCCC
Q 012101 142 QLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQ--DGRAKEAIDMFIGLKKCGFE 219 (471)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~ 219 (471)
++++++.+.. +.+...+..++..|...++.++|++.++++...+......+..++.. .++..+|++.++++.+.. +
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 9999999875 44567777888999999999999999999887665533334444444 566666999999999884 4
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH------HHHHHHH-----HhcCCh---HHHHHHHHhc
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML------NSLIDMY-----GKCGRM---DLAYKVFWEI 285 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~g~~---~~A~~~~~~~ 285 (471)
-+...+..+..+..+.|-...|.++..+- . .-+.+....+ ...++.- ....++ +.|..-++.+
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~--p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKEN--P-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhC--c-cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 45677788888899999988888876543 1 1111111111 0111000 012233 3334333433
Q ss_pred CC-----CCH-h----hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc
Q 012101 286 DQ-----PNV-S----SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY 355 (471)
Q Consensus 286 ~~-----~~~-~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (471)
.. |.. . ..--.+-++...|++.++++.|+.|...|.+....+-..+..+|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 32 321 1 2223566788899999999999999998866555678889999999999999999999986542
Q ss_pred C----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-------------C--CHH-HHHHHHHHHHhcCCHHHHHH
Q 012101 356 Q----IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-------------A--NVV-IWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 356 ~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-------------p--~~~-~~~~l~~~~~~~~~~~~a~~ 414 (471)
+ ..++......|..+|...+++++|..+++.+ ... | |-. .+..++..+.-.|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 1233444578899999999999999999998 211 2 222 34456677889999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 415 VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++++....|.+......+..++...|...+|++.++......+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 999999999999999999999999999999999999887766443
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.1e-13 Score=121.58 Aligned_cols=304 Identities=17% Similarity=0.189 Sum_probs=164.5
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHH------------------------HHHHhccc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYA------------------------HIIRTHML 80 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~------------------------a~~~~~~~ 80 (471)
+.+++....+--+...++-.+..-++. +.-.|++.-+-..+.+-.-. |.-+|+..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~k-vq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~ 203 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEK-VQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL 203 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHH-HHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc
Confidence 455555666556666665556555555 55555544221111111111 22333333
Q ss_pred CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH
Q 012101 81 HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES 160 (471)
Q Consensus 81 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (471)
| .+..+|..+|.++++--..++|.+++++-.....+.+..+||.+|.+-+-.. ..+++.+|....+.||..|+|
T Consensus 204 P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfN 277 (625)
T KOG4422|consen 204 P--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFN 277 (625)
T ss_pred C--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHH
Confidence 3 2335677777777777777777777777766666777777777776543322 266777777777777777777
Q ss_pred HHHHHHHhcCChhhHHHHh----ccCC----CCCcchHHHHHHHHHcCCChhH-HHHHHHHHHH----CCCCC----CHH
Q 012101 161 GFISLYSKAGDFEKARKVF----DENP----ERKLGSWNAIIAGLSQDGRAKE-AIDMFIGLKK----CGFEP----DDV 223 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~ 223 (471)
+++.+.++.|+++.|.+.+ .+|+ +|...+|..+|..+.+.+++.+ |..++.+... +.++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 7777777777776654433 3333 3444466666666666655533 2223333222 11221 334
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC----CCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhh
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSK----QKSD---TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSS 292 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~ 292 (471)
-|...|..|.+..+.+.|.++..-. .... +.|+ ..-|..+..+.|+....+.-...|+.|.. |+..+
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll--~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLL--KTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH--HcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 4555666666666666666655544 1111 1111 12334455555555556666666666554 55555
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
...++++..-.|.++-.-++|..+...|..-+......++..+++
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 555556555566666666666666665544444333333333333
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.6e-13 Score=132.16 Aligned_cols=419 Identities=8% Similarity=0.012 Sum_probs=258.7
Q ss_pred hhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHH
Q 012101 34 HVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIF 111 (471)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 111 (471)
-.++.++.+++++.|......-.|--.-....+...+..+...+...- ...|++..+.|..-|...|+++.++.+.+.
T Consensus 216 ~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 346667778888888544222222222233333455666666665442 235677899999999999999999999999
Q ss_pred HHHCCCC--CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---C
Q 012101 112 MSRAGVL--PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---K 186 (471)
Q Consensus 112 m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~ 186 (471)
+...... .-..+|-.+.+++-..|++++|...|.+..+..-..-+..+-.|..+|.+.|+++.+...|+.+.+. +
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 9775411 1245688889999999999999999988876542222445567889999999999999999987543 3
Q ss_pred cchHHHHHHHHHcCC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH--hhcCCCCChh
Q 012101 187 LGSWNAIIAGLSQDG----RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ--VKSKQKSDTL 260 (471)
Q Consensus 187 ~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ 260 (471)
..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+-...- ..+...|..+.. ...+-.+.+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 446666777777664 4567777777666552 4566777777666654443 333555554310 2344446778
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-------CCH------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-------PNV------SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH-V 326 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 326 (471)
..|.+...+...|++++|...|+.... +|. .+--.+....-..++.+.|.+.|....+. .|.- .
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 889999999999999999988876542 222 11222333444556777777777777665 3442 2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGA 402 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~ 402 (471)
.|..+.......+...+|...++....... .++..++.+...+.+...+..|.+-|+.. ...+|..+.-+|.+.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 333333222334556666666666654322 23333444444555555555555533333 223455555555554
Q ss_pred HHh------------cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 403 CEK------------FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 403 ~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
|.+ .+..++|+++|.++.+..|.|...-+.++.+++..|++++|..+|..+++...
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 431 12345566666666666666555555566666666666666666666665544
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.71 E-value=3e-13 Score=138.28 Aligned_cols=384 Identities=11% Similarity=-0.001 Sum_probs=277.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYT--RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
-.++..+.+ .+++..+.++.+--+ .... ..++... ..+...++...+..|.+.. +-+....-.+--...
T Consensus 317 ~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 317 GATLPVLLK---EGQYDAAQKLLATLP---ANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHh---ccHHHHHHHHhcCCC---cchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 334555666 566666665543222 2121 2333222 2356667777777776542 225555555555677
Q ss_pred ccCCchHHHHHHHHHHHh-C-CCCCcchHHHHHHHHHhcCC---hhhHHHHhc-------------------------cC
Q 012101 133 QLFALEIGRQLHSLAVRL-G-LESNEFCESGFISLYSKAGD---FEKARKVFD-------------------------EN 182 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~-------------------------~~ 182 (471)
+.|+.++|.++++..... + -..+....+.|+..|.+.+. ..++..+-. ..
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 467 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL 467 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence 888999999999887762 1 12233445567778877766 333333311 11
Q ss_pred C---CC--CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC
Q 012101 183 P---ER--KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS 257 (471)
Q Consensus 183 ~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 257 (471)
. .. +...|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++.+ ... +|
T Consensus 468 l~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka--~~~--~p 540 (987)
T PRK09782 468 LGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKI--SLH--DM 540 (987)
T ss_pred cccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHH--hcc--CC
Confidence 1 11 34467777777776 8999999988887766 577655555556667899999999999987 443 33
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWT---SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...+..+..++.+.|++++|...|++..+.++...+ .+.......|++++|...+++..+. .|+...+..+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~ 618 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATI 618 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3445667788899999999999999988763332222 3333444569999999999999876 5678888899999
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
+.+.|++++|...+++.... .|+ ...+..+..++...|++++|.+.+++. ...| +...+..+..++...|++++
T Consensus 619 l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999864 454 557778888999999999999999998 6666 56689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|+..+++..+..|.+..+.....+...+..+++.|.+-+++...-++.
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 999999999999988888889999999999999999988887665544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.6e-13 Score=119.29 Aligned_cols=353 Identities=11% Similarity=0.076 Sum_probs=255.3
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC---CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS---YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT 123 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 123 (471)
.|.+..++.++|.+.++ ....+.|+.++++.+. +-+..+||.+|.+-.-.. ..+++.+|....+.||..|
T Consensus 203 ~PKT~et~s~mI~Gl~K---~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCK---FSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred cCCCchhHHHHHHHHHH---HHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHh
Confidence 34444489999999999 6778999999998764 346678999988755432 3789999999999999999
Q ss_pred HHHHHHHHhccCCch----HHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh-HHHHhccC----CC--------CC
Q 012101 124 LPIVLKASCQLFALE----IGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK-ARKVFDEN----PE--------RK 186 (471)
Q Consensus 124 ~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~----~~--------~~ 186 (471)
+|.++.+.++.|+++ .|.+++.+|.+.|+.|...+|.-+|..+.+.++..+ |..++.++ .. .|
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 999999999999875 567889999999999999999999999999888765 33333332 11 13
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG----FEPD---DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
..-|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|+....+.-...|+.+ +..-+-|+.
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l--VP~~y~p~~ 433 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL--VPSAYFPHS 433 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccceecCCc
Confidence 3357788888888899888888776554321 3333 234567777888899999999999999 888888999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV---TFVGVLSACV 336 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~ 336 (471)
.+..-++++....|.++-..+++..+..-+. .-+-+--++++..|......|+.. -+.....-|+
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------------t~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a 501 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH------------TFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCA 501 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh------------hhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999887764222 112233345555555555555433 2333332221
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
..-.+..+..-.+++.. .......+.+...+.+.|+.++|.++|.-. +..|......-++.+-.+.++.
T Consensus 502 -ad~~e~~e~~~~R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 502 -ADIKEAYESQPIRQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred -HHHHHHHHhhHHHHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 11222223333444332 344456777888899999999999998876 3345555555777778888899
Q ss_pred HHHHHHHHHHHhcCC
Q 012101 410 KMGEWVAKHLQELEP 424 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~ 424 (471)
..|...++-+...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999988876664
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.67 E-value=3.7e-13 Score=128.86 Aligned_cols=327 Identities=14% Similarity=0.118 Sum_probs=205.4
Q ss_pred CCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhc---cCCCCCcchHHHHHHHHHcCCChhHHHHHHH
Q 012101 135 FALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFD---ENPERKLGSWNAIIAGLSQDGRAKEAIDMFI 211 (471)
Q Consensus 135 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 211 (471)
|+++.|.+++.++++.. +.....|.+|...|-..|+.+++...+- .+...|...|-.+.....+.|+++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666665543 3444555556666666666666555442 2333444555566666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC
Q 012101 212 GLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN----SLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 212 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
+..+.. +++...+---+..|-+.|+...|..-|.++ .....+.|..-+. ..+..+...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l--~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQL--LQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHH--HhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 655542 333333334444555566666666666655 3332222222111 223344444555555555554432
Q ss_pred -----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHh
Q 012101 288 -----PNVSSWTSMIVGYAANGLANEALDCFHYMRES---------------------------GIRPNHVTFVGVLSAC 335 (471)
Q Consensus 288 -----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------~~~p~~~~~~~ll~~~ 335 (471)
-+...++.++..|.+...++.|......+... ++.++...+. +.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhhhh
Confidence 23345556666666666666666666655541 2233333322 22234
Q ss_pred ccCCcHHHHHHHHHHhHHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQ--IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P--MKANVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~--~~p~~~~~~~l~~~~~~~~~~~ 410 (471)
.+.+..+...-+.....+. . ..-+...|.-+.++|...|++.+|+.+|..+ . ..-+...|-.+..+|...|.++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4445555555555555443 4 3344567888999999999999999999999 2 2235679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCccee
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLA 467 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 467 (471)
.|.+.++++....|.+...-..|...|.+.|+.++|.++++.|...+....++++|-
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 999999999999999999999999999999999999999999987666666677664
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.1e-16 Score=140.14 Aligned_cols=256 Identities=16% Similarity=0.148 Sum_probs=106.4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT-MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
+...+.+.|++++|++++++......+|+... +..+...+...++++.|.+.++.+ ...+.. ++..+..++.. ..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l--~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKL--LASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccc-ccccccccccc-cc
Confidence 34556666777777777754433321233333 333444555667777777777777 443322 44456666665 57
Q ss_pred cCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... ..++...|..+...+.+.|+.++|.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777765533 555666777778888888888888888876542 3456667777778888899999999999
Q ss_pred HHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 349 EMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 349 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
++..+. .|+ ......++..+...|+.+++.++++.. ....|...+..+..++...|+.++|...+++..+..|.
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 988765 454 667778888888889988888888777 22345567788899999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
++.....++.++...|+.++|.++.++...
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999998876543
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1e-12 Score=126.89 Aligned_cols=399 Identities=13% Similarity=0.081 Sum_probs=234.1
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-----CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-----SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
..+|. +.+.|-+-|.- -|++..++.+.+.+-.. --..+|-.+-++|-..|++++|...|.+..+.. ||.
T Consensus 267 ~~nP~-~l~~LAn~fyf---K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~ 340 (1018)
T KOG2002|consen 267 NENPV-ALNHLANHFYF---KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDN 340 (1018)
T ss_pred CCCcH-HHHHHHHHHhh---cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCC
Confidence 35577 88888888877 57788888877655321 123468889999999999999999998887653 454
Q ss_pred ch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC----ChhhHHHHhccCCCC---CcchHHH
Q 012101 122 YT--LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG----DFEKARKVFDENPER---KLGSWNA 192 (471)
Q Consensus 122 ~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~ 192 (471)
++ +.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 44 4456778999999999999999998853 556677777888888775 556777777665544 3446666
Q ss_pred HHHHHHcCCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc---CCCCChh-----
Q 012101 193 IIAGLSQDGRAKEAIDMFIGL----KKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS---KQKSDTL----- 260 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~----- 260 (471)
+...+.+..-+ .++..|... ...+-.+.....+.+.......|+++.|...|... ... ...++..
T Consensus 420 laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A--~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 420 LAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA--LGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH--hhhhhhhcCccccccchh
Confidence 66666554433 336666543 34555577778888888888889998888888877 332 1222221
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh-HHHHHHHHHhCCChhHHHHHHHHHHHc-CCC-------------
Q 012101 261 -MLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS-WTSMIVGYAANGLANEALDCFHYMRES-GIR------------- 322 (471)
Q Consensus 261 -~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~------------- 322 (471)
+--.+...+-..++++.|.+.|..+.+ |+-+. |--+.......++..+|...+++.... .-.
T Consensus 497 t~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 497 TLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 122234444455666777777766654 32221 111111111224445555555544332 112
Q ss_pred ---------------------CCHHHHHHHHHHhcc------------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 323 ---------------------PNHVTFVGVLSACVH------------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 323 ---------------------p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+|......|-..|.. .+..++|+++|.++... -+.|...-+-+.-
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGI 654 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhh
Confidence 233333333332211 12344555555555432 1233344444555
Q ss_pred HHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHH
Q 012101 370 LLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-P-WSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~ 445 (471)
.++..|++.+|..+|... ...-+..+|-.+..+|...|++..|+++|+...+.. + .++.+...|+.++.+.|.+.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 555566666666666655 112233455556666666666666666666555433 1 223345556666666666666
Q ss_pred HHHHHHHhhcCC
Q 012101 446 VERIRAVMKHRN 457 (471)
Q Consensus 446 A~~~~~~m~~~~ 457 (471)
|.+.+.......
T Consensus 735 ak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 735 AKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhC
Confidence 666555554433
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.1e-12 Score=115.06 Aligned_cols=395 Identities=12% Similarity=0.080 Sum_probs=274.4
Q ss_pred cCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.+++..|+.+|++.-. ..++..|-.-+..=.++..+..|..++++....=+..|.. |---+..--..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 4556677777776532 3566667777777777788888888888776543222222 222333344567788888888
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc--CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE--NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
+.-.+ ..|+...|++.|+.=.+-..++.|..++++ +..|++.+|--....--+.|+...|..+|+...+. -.|.
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d 240 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDD 240 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhH
Confidence 77664 467888888888888888888888888877 34677777777777777778888888888776653 2222
Q ss_pred H----HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH--------HhcCC--
Q 012101 223 V----TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD-TLMLNSLIDMYGKCGRMDLAYKVF--------WEIDQ-- 287 (471)
Q Consensus 223 ~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~-- 287 (471)
. .|.+....=.+...++.|.-+|+.. +..-.... ...|..+...=-+-|+-...+... +++.+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyA--ld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYA--LDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 2 2333333334556677777777766 44322211 334544444444555544443332 22222
Q ss_pred -CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHH---hccCCcHHHHHHHHHHhHHhcC
Q 012101 288 -PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV-------TFVGVLSA---CVHGGKVQEGKHFFEMMKNVYQ 356 (471)
Q Consensus 288 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 356 (471)
-|-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+ =....+++.+.++++...+ -
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 34467777777777889999999999999876 555321 12111111 1346789999999998875 3
Q ss_pred CCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 357 IEPRFAHYGCMVDLL----GRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 357 ~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
++....||.-+--+| .++.++..|.+++... |..|-..+|...|..-.+.++++....++++..+.+|.+..+|.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ 475 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWS 475 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHH
Confidence 445556666555544 4788999999999988 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeeccC
Q 012101 432 VLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATRLD 471 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 471 (471)
..+..-...|+++.|..+|+-..+++....|..-|-..||
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 9999999999999999999999998887777777766654
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.3e-12 Score=115.71 Aligned_cols=346 Identities=14% Similarity=0.131 Sum_probs=234.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--------hHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF--------CES 160 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~ 160 (471)
.|.+--.+.+.|.++.|+.-|+...+. .|+..+-..|+-++..-|+.++..+.|.+|+.....+|.. .-.
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 444444677889999999999988775 4776655455555556678899999999888643333222 112
Q ss_pred HHHHHHHhcC-----------ChhhHH----HHhccCCCCCcc---hHH------------------HHHHHHHcCCChh
Q 012101 161 GFISLYSKAG-----------DFEKAR----KVFDENPERKLG---SWN------------------AIIAGLSQDGRAK 204 (471)
Q Consensus 161 ~ll~~~~~~g-----------~~~~a~----~~~~~~~~~~~~---~~~------------------~li~~~~~~~~~~ 204 (471)
.|+.--.+.. +.+++. ++..-...++.. -|. .-...+.+.|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2332222221 111211 111112222211 010 1123467889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH------------------------------------HHHcCcCCHHHHHHHHHHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVT------------------------------------SACGSLGDLELALQVHKYV 248 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li------------------------------------~~~~~~~~~~~a~~~~~~~ 248 (471)
.|+++++-+.+..-+.-...-+.+. +.....|++++|.+.|++.
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888776543222111111110 1112346778888888777
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
+...-.-....|| +.-.+-..|++++|...|-++.. .+....-.+...|-...+..+|++++.+.... ++.|.
T Consensus 517 --l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 517 --LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred --HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 4433222222333 33346677888888888877653 66677777788888888999999988776654 55677
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGAC- 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~- 403 (471)
.....|...|-+.|+-.+|.+.+-+--+ -++-+..+...|...|....-++++...|++. -++|+..-|..++..|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 8888999999999999999998776543 35667888888889999999999999999999 7899999999988655
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
.+.|++.+|..+++...+..|.+......|+..+...|.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 578999999999999999999998888889988877774
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.1e-12 Score=123.26 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=173.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH--HHHHHHHhcCChhhH
Q 012101 99 LEAPKKALDIYIFMSRAGVLPDCYT-LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES--GFISLYSKAGDFEKA 175 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a 175 (471)
.|++++|.+.+....+.+ +++.. |.....+..+.|+++.+.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 477777776666554432 12222 222233446667777777777776653 34433222 224556666666666
Q ss_pred HHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh
Q 012101 176 RKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVK 252 (471)
Q Consensus 176 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 252 (471)
.+.++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------------------- 228 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------------------- 228 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------------------
Confidence 6666654432 3335556666666666666666666666655432211 111000
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFV 329 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 329 (471)
...|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+.+++..+. .|+...
T Consensus 229 ------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l-- 298 (398)
T PRK10747 229 ------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL-- 298 (398)
T ss_pred ------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--
Confidence 01222233333333445555566665543 46667777788888888888888888887764 444422
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGN 408 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~ 408 (471)
.++.+....++.+++.+..+...+.+ +-|......+...+.+.|++++|.+.|+.. ...|+..++..+..++.+.|+
T Consensus 299 ~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 299 VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Confidence 22334445588888888888887653 334455667888888888888888888888 778888888888888888888
Q ss_pred HHHHHHHHHHHHhc
Q 012101 409 VKMGEWVAKHLQEL 422 (471)
Q Consensus 409 ~~~a~~~~~~~~~~ 422 (471)
.++|.+++++...+
T Consensus 377 ~~~A~~~~~~~l~~ 390 (398)
T PRK10747 377 PEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888887654
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=7.8e-12 Score=117.64 Aligned_cols=275 Identities=10% Similarity=0.059 Sum_probs=203.2
Q ss_pred cCChhhHHHHhccCCCCC--cc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcCcCCHHHHHH
Q 012101 169 AGDFEKARKVFDENPERK--LG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV--SVTSACGSLGDLELALQ 243 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~--~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~ 243 (471)
.|+++.|++.+....+.. .. .|........+.|+++.|...+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777655431 22 3333344457788888888888888765 55554332 33566778888888888
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CH--------hhHHHHHHHHHhCCChhHHHHH
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP---NV--------SSWTSMIVGYAANGLANEALDC 312 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~~~~~~a~~~ 312 (471)
.++.+ .+.. +-++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++
T Consensus 175 ~l~~~--~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 175 GVDKL--LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHH--HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88887 4444 445677888888888888998888888887751 11 1333444444455566777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 313 FHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 313 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+.. ...|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 7776543 3456778888899999999999999999998753 455532 2334445669999999999998 6666
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 392 N-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 392 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+ ...+..+...|.+.+++++|.+.|+++.+..|. ...+..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 456888999999999999999999999999885 45678999999999999999999997754
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.58 E-value=9.8e-12 Score=117.65 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=85.2
Q ss_pred HHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhccCCcHHHHHHHHHH
Q 012101 277 LAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT--F-VGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 277 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
...+.++...+ .+...+..+...+...|++++|.+.+++..+. .||... + ..........++.+.+.+.++.
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 33344444432 35666666777777777777777777777765 333321 0 1111122334666677777766
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 351 MKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG--M-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 351 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+..+-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++...
T Consensus 325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 665432222223445666777777777777777773 2 5567777677777777777777777777776543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=2.2e-14 Score=128.97 Aligned_cols=256 Identities=16% Similarity=0.123 Sum_probs=84.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLP-DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
.+...+.+.|++++|++++++......+| |...|..+...+...++++.|.+.++++.+.+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44666777777888887775544333123 33444444555666777777777777777654 2245556666665 577
Q ss_pred CChhhHHHHhccCCC--CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPE--RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG-FEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 170 g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
+++++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+.+...|......+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765432 344456666677777777777777777765432 23455566666677777777777777777
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
+. ++..+ .|..+.+.++..+...|+.+++..++....+ .|...|..+..++...|+.++|..+|++..+.. +.
T Consensus 171 ~a--l~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KA--LELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HH--HHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HH--HHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 77 44332 2455666677777777777776665555432 455566667777777777777777777766642 33
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
|......+..++...|+.++|.++..++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 55666666677777777777777666553
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1.3e-11 Score=109.51 Aligned_cols=396 Identities=14% Similarity=0.071 Sum_probs=259.9
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCC---Cchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSY---SAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
+...|...|.. ..-..+|+..++-+... ||.- .-..+-..+.+..++.+|++.|.-....-...+..+-.-++
T Consensus 203 vl~nlaqqy~~---ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEA---NDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhh---hHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 55555566655 45567777777655421 2211 12235567888889999999998776653333344443444
Q ss_pred H----HHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC----------------CCcc
Q 012101 129 K----ASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE----------------RKLG 188 (471)
Q Consensus 129 ~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----------------~~~~ 188 (471)
. .+.+.|.++.|...|+...+. .|+..+--.|+-++..-|+-++..+.|.+|.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3 468999999999999998875 57766655566677778999999999987641 1111
Q ss_pred hHH-----HHHHHHHcCC--ChhHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHcCcCCHHH
Q 012101 189 SWN-----AIIAGLSQDG--RAKEAIDMFIGLKKCGFEPDDVT---M------------------VSVTSACGSLGDLEL 240 (471)
Q Consensus 189 ~~~-----~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~---~------------------~~li~~~~~~~~~~~ 240 (471)
..| -.+.-.-+.+ +.++++-.-.++..--+.||-.. | ..-...+.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 122 2222222222 12222222222222112222110 0 011234678999999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHH------------------------------------HHHhcCChHHHHHHHHh
Q 012101 241 ALQVHKYVFQVKSKQKSDTLMLNSLID------------------------------------MYGKCGRMDLAYKVFWE 284 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~g~~~~A~~~~~~ 284 (471)
|.++++-. .+.....-...-+.|.- ....+|++++|.+.|++
T Consensus 438 aieilkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999877 44433221111111111 11135889999999998
Q ss_pred cCCCCHhhHHHHHH---HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 285 IDQPNVSSWTSMIV---GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 285 ~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
....|...-.+|.. .+-..|+.++|++.|-++..- +..+......+...|--..+..+|++++..... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 88877655444443 356679999999999887653 344677777888888888999999999988753 355567
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH-HHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN-IYA 438 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~-~~~ 438 (471)
...+.|.+.|-+.|+-..|.+..-+- ..-| +..+..=|...|....-+++++.+|++..-+.| +.+-|..++- ++.
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp-~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP-NQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHH
Confidence 88999999999999999998875554 4334 777877788888888889999999999988887 4456666554 566
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+.|++.+|.++++.+...-++
T Consensus 672 rsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hcccHHHHHHHHHHHHHhCcc
Confidence 889999999999999876544
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.9e-11 Score=105.38 Aligned_cols=315 Identities=12% Similarity=0.057 Sum_probs=229.0
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 209 (471)
.-+.|....|...|...+.. -+..|.+-+....-..+.+.+..+...++..+.. .--.+..++-...+.++++.-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777665532 1233444443333334455555444444432221 112234556666688889888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ--KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
.+.....|++-+...-+....+.....|+++|+.+|+++ .+..+ --|..+|+.++-.--.+.++.---...-.+.+
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei--~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK 327 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEI--RKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK 327 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 888888888777666666666677889999999999999 55532 12456777666333222222221122223334
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGC 366 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 366 (471)
--+.|..++.+-|.-.++.++|..+|++..+. .|. ...|+.+-+-|...++...|.+-++.+.+. .+.|-..|-.
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYG 403 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYG 403 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhh
Confidence 44567777888889999999999999999876 444 456777778899999999999999999754 2456778999
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
|.++|.-.+.+.-|+-.|++. ..+| |...|.+|..+|.+.++.++|++.|++....+..+...+..|++.|.+.++.+
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999 7777 67899999999999999999999999999988777789999999999999999
Q ss_pred HHHHHHHHhhc
Q 012101 445 EVERIRAVMKH 455 (471)
Q Consensus 445 ~A~~~~~~m~~ 455 (471)
+|...+++-.+
T Consensus 484 eAa~~yek~v~ 494 (559)
T KOG1155|consen 484 EAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHH
Confidence 99998887655
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=2.5e-10 Score=105.98 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCC--CcchHH
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFM----SRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLES--NEFCES 160 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~ 160 (471)
..|-+-...=-.+|+.+...++.++- ...|+..+..-|..=...|-..|..-.+..+....+..|+.. -..+|.
T Consensus 441 ~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~ 520 (913)
T KOG0495|consen 441 EIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWL 520 (913)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHh
Confidence 34444444444455555555444432 334444444444444444444444444444444444444321 123444
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHH----------------------------------HHHcCCCh
Q 012101 161 GFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIA----------------------------------GLSQDGRA 203 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~----------------------------------~~~~~~~~ 203 (471)
.-...|.+.+.++-|..+|....+- +...|..... .+...|+.
T Consensus 521 ~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCc
Confidence 4445555555555555555443211 1222333333 33333444
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
..|..++....+.. +-+...+...+..-....+++.|..+|.+. . ...++..+|.--+..---.++.++|.++++
T Consensus 601 ~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llaka--r--~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 601 PAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKA--R--SISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHH--h--ccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 44444444433332 113333444444444444444444444433 1 122333333333333333344444444444
Q ss_pred hcCC--CCH-hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC
Q 012101 284 EIDQ--PNV-SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR 360 (471)
Q Consensus 284 ~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 360 (471)
+..+ |+. ..|-.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...=-+.|.+-+|..+++...-+ -+-+
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~ 752 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKN 752 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCc
Confidence 3333 222 23333333444444444444444332221 1111223333333333444555555555555432 1234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-------C-------------------------CCCCHHHHHHHHHHHHhcCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-------P-------------------------MKANVVIWGCLMGACEKFGN 408 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-------------------------~~p~~~~~~~l~~~~~~~~~ 408 (471)
...|-..|++=.+.|+.+.|..++.+. | ..-|....-.+...+....+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k 832 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK 832 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 445555555555666666555554443 0 01122223333344444445
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+++|.+-|.+..+.+|++..+|..+...+.+.|.-++-.+++++....
T Consensus 833 ~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 833 IEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 555555666655555555555555555555555555555555554443
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=1.4e-11 Score=116.69 Aligned_cols=294 Identities=12% Similarity=-0.005 Sum_probs=209.2
Q ss_pred hhHHHHHHHHH--hCCCchHHHHHHHHHHHCCCCCCcch-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 87 FHWNNIIRLYT--RLEAPKKALDIYIFMSRAGVLPDCYT-LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 87 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
..+..+.++.. ..|+++.|.+.+.+..+. .|+... +-....+..+.|+++.+.+.+.+..+....+.........
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 34555666654 479999999999888765 355433 3444567788899999999999987654222223444457
Q ss_pred HHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---cCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSAC---GSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~ 237 (471)
..+...|+++.|.+.++.+.+. +...+..+...+.+.|++++|.+.+..+.+.++.++......-..++ ...+.
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999887643 44578899999999999999999999999987543332212111221 22222
Q ss_pred HHHHHHHHHHHHHhhcC---CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh---HHHHHHHHHhCCChhHH
Q 012101 238 LELALQVHKYVFQVKSK---QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS---WTSMIVGYAANGLANEA 309 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a 309 (471)
.+.+.+.+..+ .... .+.+...+..+...+...|+.++|.+++++..+ ||... ...........++.+.+
T Consensus 241 ~~~~~~~L~~~--~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNW--WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHH--HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 22223344444 2222 224788899999999999999999999998876 54432 12222233445788889
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 310 LDCFHYMRESGIRPNH---VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
.+.+++..+. .|+. ....++...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++
T Consensus 319 ~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 319 EKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999888765 4444 44557788899999999999999953221 4579999899999999999999999999987
Q ss_pred C
Q 012101 387 M 387 (471)
Q Consensus 387 m 387 (471)
.
T Consensus 396 ~ 396 (409)
T TIGR00540 396 S 396 (409)
T ss_pred H
Confidence 4
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2.3e-11 Score=109.04 Aligned_cols=351 Identities=15% Similarity=0.072 Sum_probs=235.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC-cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHh
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPD-CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN-EFCESGFISLYSK 168 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 168 (471)
..-.-|.++|++++|++.|.+..+. .|| +..|.....+|...|+|+++.+--...++. .|+ +..+..-.+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888899999999988874 577 666777777788888888877766666553 233 2233444455555
Q ss_pred cCChhhHHH----------------------Hhcc---------CC---CCCcchHHHHHHHHHc---------------
Q 012101 169 AGDFEKARK----------------------VFDE---------NP---ERKLGSWNAIIAGLSQ--------------- 199 (471)
Q Consensus 169 ~g~~~~a~~----------------------~~~~---------~~---~~~~~~~~~li~~~~~--------------- 199 (471)
.|++++|+. ++.. +. .|...+ .+.|..|..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccccccCCCc
Confidence 566555432 1111 11 111111 111111110
Q ss_pred --------------CC---ChhHHHHHHHHHHHC-CCCCCH-----------HHHHHHHHHHcCcCCHHHHHHHHHHHHH
Q 012101 200 --------------DG---RAKEAIDMFIGLKKC-GFEPDD-----------VTMVSVTSACGSLGDLELALQVHKYVFQ 250 (471)
Q Consensus 200 --------------~~---~~~~a~~~~~~m~~~-g~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~ 250 (471)
.+ .+.+|.+.+.+-... ...++. .+.......+.-.|+.-.+..-|+..
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~-- 352 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA-- 352 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH--
Confidence 01 122222222211100 011111 11111112233457788888888887
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHH
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHV 326 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~ 326 (471)
++....++. .|--+..+|....+.++-.+.|++..+ .|+.+|..-.+.+.-.+++++|..=|++.+.. .| +..
T Consensus 353 I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAY 429 (606)
T ss_pred HhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhH
Confidence 655544333 377777889999999999999998765 56778888888888899999999999998875 44 456
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-------H--HHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-------V--VIW 396 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~--~~~ 396 (471)
.|..+-.+..+.+.++++...|++..+++ +--+..|+.....+...+++++|.+.|+.. .+.|+ . .+-
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh
Confidence 67777777778899999999999998754 555678999999999999999999999987 33333 2 222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-.++..-. .+++..|..++++..+++|.....|..|+..-...|+.++|+++|++-.
T Consensus 508 Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 508 KALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22322222 3899999999999999999999999999999999999999999999753
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.2e-10 Score=112.06 Aligned_cols=347 Identities=15% Similarity=0.048 Sum_probs=243.9
Q ss_pred CchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 012101 68 NQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHS 145 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (471)
|+.+.|..++.++-. +.+..+|..|-..|-..|+.+++...+-..-... +-|...|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 889999999988743 4567889999999999999999988776665443 3466888888888999999999999999
Q ss_pred HHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc----c----hHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 012101 146 LAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL----G----SWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217 (471)
Q Consensus 146 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 217 (471)
+.++.. +++...+---...|-+.|+...|.+-|.++-+.+. . .-...+..+...++.+.|.+.++.....+
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 998875 55555555567888999999999888887654433 1 23344666777777788888888776632
Q ss_pred -CCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH-------------------------hhcCCCCChhH-HHHHHHHHH
Q 012101 218 -FEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ-------------------------VKSKQKSDTLM-LNSLIDMYG 270 (471)
Q Consensus 218 -~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------------------------~~~~~~~~~~~-~~~l~~~~~ 270 (471)
-..+...++.++..+.+...++.+......... ...+..++..+ ...+.-...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 234455677788888888888888877766521 01112233333 111222222
Q ss_pred hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
+.++..+++.-|-.... .++..|.-+..++.+.|++.+|+.+|..+...-.--+...|..+..+|...|..++|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 33444444433322222 34567778888999999999999999999877555567788888899999999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 012101 347 FFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-----------PMKANVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 347 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
.|+.+... .|+ ...--.|...+.+.|++++|.+.+..+ +..|+..........+.+.|+.++-..
T Consensus 471 ~y~kvl~~---~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 471 FYEKVLIL---APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHhc---CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99998754 343 334446777888999999999999986 233555555556667778887766544
Q ss_pred HHHHH
Q 012101 415 VAKHL 419 (471)
Q Consensus 415 ~~~~~ 419 (471)
....|
T Consensus 548 t~~~L 552 (895)
T KOG2076|consen 548 TASTL 552 (895)
T ss_pred HHHHH
Confidence 44333
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=5.5e-10 Score=100.03 Aligned_cols=395 Identities=12% Similarity=0.082 Sum_probs=246.7
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhccc-CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHML-HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP 125 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (471)
-|.+.+.|-.-+.+=-. .|++..|+++|++. ...|+..+|++.|..=.+.+.++.|..++++..- +.|+..+|.
T Consensus 137 lPRVdqlWyKY~ymEE~---LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wi 211 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEM---LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWI 211 (677)
T ss_pred cchHHHHHHHHHHHHHH---hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHH
Confidence 34444455555544444 56677788887764 3467778888888888888888888888887765 457777777
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHh-CC-CCCcchHHHHHHHHHhcCChhhHHHHhc----cCCCCCc-chHHHHHHHHH
Q 012101 126 IVLKASCQLFALEIGRQLHSLAVRL-GL-ESNEFCESGFISLYSKAGDFEKARKVFD----ENPERKL-GSWNAIIAGLS 198 (471)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~----~~~~~~~-~~~~~li~~~~ 198 (471)
-..+.--+.|+...+..+|+...+. |- ..+...+.+....=.++..++.|.-+|. .+++... ..|......--
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 7777777777888888887776652 21 1112233333333345566677766663 3443322 23444444444
Q ss_pred cCCChhHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHH
Q 012101 199 QDGRAKEAIDM--------FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT--LMLNSLIDM 268 (471)
Q Consensus 199 ~~~~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 268 (471)
+-|+.....+. |+.+...+ +.|-.+|-..+..-...|+.+...++|+.. +.. ++|-. ..|...|-.
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErA--Ian-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERA--IAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHH--Hcc-CCchhHHHHHHHHHHH
Confidence 44554433332 33333332 456667777777777778888888888877 433 33321 122222211
Q ss_pred --------HHhcCChHHHHHHHHhcCC---CCHhhHHHH----HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 269 --------YGKCGRMDLAYKVFWEIDQ---PNVSSWTSM----IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 269 --------~~~~g~~~~A~~~~~~~~~---~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
=....+.+.+.++|+...+ ....||.-+ ..--.+..+...|.+++-... |.-|...+|...|.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 1245677778888876654 233444333 333345677888888887665 55788888888888
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKA----NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~l~~~~~~~~~~ 409 (471)
.=.+.+.++.+..++++..+- + +-+..+|......=...|+.+.|..+|+-.-.+| -...|.+.|..-...|.+
T Consensus 446 lElqL~efDRcRkLYEkfle~-~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEF-S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhc-C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 888888888888888888653 1 3355677777777777888888888888772233 345677777777788888
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHH-----cCC-----------ChHHHHHHHHHhhc
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIYA-----SRG-----------LWEEVERIRAVMKH 455 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~ 455 (471)
++|..+++++.+..+... +|...+..-. ..| ....|.++|++...
T Consensus 524 ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 524 EKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 888888888887765433 5555554433 333 45567777776643
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.2e-11 Score=102.00 Aligned_cols=224 Identities=14% Similarity=0.096 Sum_probs=149.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc------hHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF------CESG 161 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 161 (471)
.|-.-++.+. +.+.++|.++|-+|.+.. +-+..+-.+|-+.+.+.|..|.|..++..+.+ .||.. ....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 4555555444 457899999999998743 23455566777889999999999999999887 34433 3345
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHcC
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDV----TMVSVTSACGS 234 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~ 234 (471)
|..-|...|-+|.|+.+|..+.+.+.. +...|+..|-+..+|++|+++-+++.+.|-.+... .|.-+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 667788889999999999888764333 67778888989999999999988888776444332 34455555556
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCH----hhHHHHHHHHHhCCChhHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNV----SSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 310 (471)
..+.+.|..+++.. .+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.|+ .+...|..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kA--lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKA--LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHH--HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 66777777777766 3332 22334444455666666666666666666655333 23344555555566666665
Q ss_pred HHHHHHHHc
Q 012101 311 DCFHYMRES 319 (471)
Q Consensus 311 ~~~~~m~~~ 319 (471)
..+.++.+.
T Consensus 270 ~fL~~~~~~ 278 (389)
T COG2956 270 NFLRRAMET 278 (389)
T ss_pred HHHHHHHHc
Confidence 555555554
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.6e-12 Score=119.50 Aligned_cols=276 Identities=13% Similarity=0.054 Sum_probs=213.6
Q ss_pred ChhhHHHHhccCCCC--Ccc-hHHHHHHHHHcCCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 171 DFEKARKVFDENPER--KLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCG--FEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~--~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
+..+|...|..++.. |+. ...-+..+|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467888888886543 332 44567788999999999999999998763 12356778777765432 2223333
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
.+- +-.-.+-.+.+|-++.++|.-.++.+.|.+.|++..+. ...+|+.+..-+.....+|.|...|+....
T Consensus 410 aq~--Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 410 AQD--LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHH--HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 322 22223446789999999999999999999999999874 446788888888888999999999998764
Q ss_pred CCHHHHH---HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 012101 323 PNHVTFV---GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIW 396 (471)
Q Consensus 323 p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 396 (471)
.|...|+ .+.-.|.+.++++.|+-.|+++.+ +.|. .+....+...+.+.|+.++|++++++. ...| |...-
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 3444444 455679999999999999999974 4564 455667778889999999999999999 4454 55555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
-.-+..+...+++++|.+.++++++.-|++...|..++..|.+.|+.+.|+.-|--+.+-+++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 556677888899999999999999999999999999999999999999999988888776554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=4.9e-12 Score=117.65 Aligned_cols=279 Identities=12% Similarity=0.058 Sum_probs=210.9
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC------CcchHHHHHHHHHcCCChhHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER------KLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
+..+|...|..... .+.-+..+...+..+|...+++++|+++|+.+... +...|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 45778888888433 33334466677889999999999999999887643 55678877765443 233444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS-DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP 288 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 288 (471)
+.+-.-.--+-.+.+|.++.++|.-.++.+.|.+.|+...+ +.| ...+|+.+..-+.....+|+|...|+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 43222222255678999999999999999999999998833 233 5778888888899999999999999999988
Q ss_pred CHhhHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHH
Q 012101 289 NVSSWTS---MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHY 364 (471)
Q Consensus 289 ~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~ 364 (471)
|+..||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++... .|. +..-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~ 560 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCK 560 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhH
Confidence 8877776 5667889999999999999988753 224566666777788889999999999998754 332 2232
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 365 GCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
-..+..+...+++++|+..++++ .+.|+. ..+..+...|.+.|+.+.|..-|..+.+++|...
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 34556677889999999999999 666754 5777788999999999999999999999988644
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.49 E-value=8e-10 Score=102.78 Aligned_cols=339 Identities=15% Similarity=0.094 Sum_probs=239.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
|+.-...|.+.+.++-|..+|....+-- +-+...|......--..|..+....++++.+..- +.....|-.....+-.
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK 596 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh
Confidence 4444445555556666666776666542 3345566666666566677777777777777642 4444556556666667
Q ss_pred cCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 169 AGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
.||...|..++...-+. +...|-+.+..-..+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 78888888887765432 3446778888888888888888888877754 677777766666666677888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTSMIVGYAANGLANEALDCFHYMRESGIR 322 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 322 (471)
++. ++. ++.-...|-.+.+.+-+.++.+.|...|..-.+ |+ +..|-.+...--+.|+.-+|..++++.+-++ +
T Consensus 675 Ee~--lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 675 EEA--LKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHH--HHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 877 443 333455777778888888888888887776554 44 3556666666667778888888888777664 3
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC----------------------------CCCChhHHHHHHHHHHhc
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ----------------------------IEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------------------~~p~~~~~~~li~~~~~~ 374 (471)
-+...|...|..-.+.|..+.|..++.+..+.+. ...|..+...+...+...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 3566777777777788888877777766655421 133455556667777888
Q ss_pred CCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.++++|.+.|.+. .+.||. .+|.-+...+.++|.-+.-.+++.+....+|.....|.....
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 8999999999998 777765 588889999999999999999999999999877666665544
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.3e-10 Score=100.51 Aligned_cols=297 Identities=12% Similarity=0.053 Sum_probs=210.1
Q ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 012101 89 WNNIIRLYTR--LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY 166 (471)
Q Consensus 89 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 166 (471)
-..+..+..+ .|++.+|+++..+-.+.+-. ....|..-..+.-+.||.+.+-.++.+..+..-.++..+.-+.....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3445555544 58888888888887766533 23345555667777888888888888877753355555666666777
Q ss_pred HhcCChhhHHHHhccC---CCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 167 SKAGDFEKARKVFDEN---PERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 167 ~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
...|+.+.|..-.+++ ...++........+|.+.|++.+...++..|.+.|.--|+.. .+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~ 226 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR 226 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH
Confidence 7777777777666553 344556777777778888888888888777777765433321 11
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESG 320 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 320 (471)
+ ...+|+.+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++..+..+++
T Consensus 227 l-------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~ 293 (400)
T COG3071 227 L-------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ 293 (400)
T ss_pred H-------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 1 112455566555555555555566666653 556666777888888899999999998888887
Q ss_pred CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 321 IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
..|+. ...-.+.+-++.+.-++..+.-.+.++-.| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+-+
T Consensus 294 ~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~l 367 (400)
T COG3071 294 WDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAEL 367 (400)
T ss_pred cChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHH
Confidence 77762 222345677888777777777767666555 56778889999999999999999987 888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 012101 400 MGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
..++.+.|+..+|.+..++...+
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999998887644
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=8.6e-11 Score=100.12 Aligned_cols=291 Identities=13% Similarity=0.052 Sum_probs=204.4
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC-CCCcc------hHHHHHH
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP-ERKLG------SWNAIIA 195 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~------~~~~li~ 195 (471)
.|..=++.+. .++.++|...|-+|.+.. +.+..+.-+|-+.|-+.|..|.|+++-..+. .||.. +...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3444444443 358999999999998843 4455666788899999999999999998755 45554 4556778
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh----hHHHHHHHHHHh
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT----LMLNSLIDMYGK 271 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 271 (471)
-|...|-++.|..+|..+.+.| .--......++..|-...+|++|.++-+.. .+.+..+.. ..|.-+...+..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L--~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERL--VKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHcCCccchhHHHHHHHHHHHHHhh
Confidence 8889999999999999998765 344567778899999999999999998888 665544432 345556666666
Q ss_pred cCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
..+.+.|..++.+..+.|. ..--.+.+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+.++....+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 7788888888887765322 3333455677788888888888888888754444566777888888888888888888
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEG-MPMKANVVIWGCLMGACEKFG---NVKMGEWVAKHLQE 421 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 421 (471)
..+.+. .++...-..+.+.-......+.|...+.+ +.-+|+...+..++..-.... ...+-...++.|..
T Consensus 273 ~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 273 RRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 877654 34444444555544445555555554444 477888888888887665433 34444555555554
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=3.9e-11 Score=114.90 Aligned_cols=251 Identities=14% Similarity=0.107 Sum_probs=166.3
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCC
Q 012101 107 DIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERK 186 (471)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 186 (471)
.++-.+...|+.|+..||..+|.-||..|+.+.|- +|..|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45666777888888888888888888888888888 8888877777777888888888888888877766 666
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHH-HH-------HCCCCCCHHHHHHHHH--------------HHcCcCCHHHHHHH
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIG-LK-------KCGFEPDDVTMVSVTS--------------ACGSLGDLELALQV 244 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~g~~p~~~~~~~li~--------------~~~~~~~~~~a~~~ 244 (471)
..+|..|..+|...||... ++..++ |. ..|+-....-+-..+. .....|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888654 222222 21 1222111111111111 11222333444443
Q ss_pred HHHHHHhhcC-CCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 245 HKYVFQVKSK-QKSDTLMLNSLIDMYGK-CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
+..+ -... ..|..+ +++-... ...+++-...-+...+ ++..+|.+.+.+-...|+.+.|..++.+|.+.|+
T Consensus 162 l~~~--Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKV--PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhC--CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 3322 1100 111111 1221111 1223444444444444 8999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+.+..-|..|+-+ .++..-++.+++-|.+. |+.|+..|+.-.+-.+...|.
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 9999888888755 78888888888888666 999999999877777666554
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.3e-10 Score=99.54 Aligned_cols=289 Identities=9% Similarity=0.022 Sum_probs=176.6
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
..+..+..+.. .|++.+|+++..+-... -.+..|-.-..+--+.|+.+.+-..+.+..+.--.++...+-+..+...
T Consensus 86 ~~~~egl~~l~-eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLF-EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 34455554433 59999999998765432 2335666667777889999999999999987533455566666677889
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-----------hHHHHHHHHHcCC
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-----------SWNAIIAGLSQDG 201 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~li~~~~~~~ 201 (471)
..|+.+.|..-++++.+.+ +.++.+.......|.+.|++.....+...+.+.+.. +|+.++.-....+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 165 NRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred hCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999876 566778888999999999999999999998876543 3444444333333
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
..+.-...++..... .+-++..-.+++.-+.+.|+.+.|.++.++. .+.+..++
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~--Lk~~~D~~----------------------- 297 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA--LKRQWDPR----------------------- 297 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH--HHhccChh-----------------------
Confidence 333323333332222 2223333334444444444444444444444 44433332
Q ss_pred HHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 282 FWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
-...-.+.+-++...-.+..++-.+. .+-++-.+.+|-..|.+.+.+.+|.+.|+... ...|+.
T Consensus 298 ------------L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~ 361 (400)
T COG3071 298 ------------LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAAL---KLRPSA 361 (400)
T ss_pred ------------HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---hcCCCh
Confidence 11112233445555545544443332 12222445556666666666666666666554 335666
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
.+|+.+.+++.+.|++++|.+..++.
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 66666666666666666666666554
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-09 Score=99.67 Aligned_cols=422 Identities=13% Similarity=0.025 Sum_probs=281.6
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLY 96 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~ 96 (471)
+-++++.+...+..+.+..+-+... ++.-||. -.--+..++.- .++++.|..+...-. ...|..+.......+
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~--~l~~dp~-d~~~~aq~l~~---~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVA--GLTNDPA-DIYWLAQVLYL---GRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH--hccCChH-HHHHHHHHHHh---hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 4445666666666666555555444 4445555 33445555555 456677766654332 236777888888899
Q ss_pred HhCCCchHHHHHHH----HHHHC-------C--CCCCcch----HHHHHH-------HHhccCCchHHHHHHHHHHHhCC
Q 012101 97 TRLEAPKKALDIYI----FMSRA-------G--VLPDCYT----LPIVLK-------ASCQLFALEIGRQLHSLAVRLGL 152 (471)
Q Consensus 97 ~~~g~~~~A~~~~~----~m~~~-------g--~~p~~~~----~~~ll~-------~~~~~~~~~~a~~~~~~~~~~~~ 152 (471)
.+..++++|..++. .+... + +.+|..- -+.-.. .+....+.++|...|.+....
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~-- 170 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA-- 170 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc--
Confidence 99999999999998 32110 0 1122111 111111 233444567777777765543
Q ss_pred CCCcchHHHHHHHHHhc---------------------CChhhHHHHhcc----CC----------------CCCcchHH
Q 012101 153 ESNEFCESGFISLYSKA---------------------GDFEKARKVFDE----NP----------------ERKLGSWN 191 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~---------------------g~~~~a~~~~~~----~~----------------~~~~~~~~ 191 (471)
|...+.++...-... .+.+.-+.+|+- +. +.++....
T Consensus 171 --D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 171 --DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred --chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 333333222111110 011112222221 00 01222333
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 192 AIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 192 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
.-..-+...+++++..++.+...+.. ++....+..-|.++...|+..+-..+-..+ ++ ..+....+|-++.--|.-
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~L--V~-~yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKL--VD-LYPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHH--HH-hCCCCCcchhhHHHHHHH
Confidence 44455677889999999999888764 555556666666777888877666666666 33 345567889999999999
Q ss_pred cCChHHHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.|+..+|++.|.+....| ...|-.+...|+..|..|+|+..+...-+.- +-...-+--+---|.+.+..+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999877644 3689999999999999999999998876541 111111222333578889999999999
Q ss_pred HHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 349 EMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM--------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 349 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
.... ++.| |+...+-+.-.....+.+.+|..+|+.. +..+ -..+++.|..+|.+.+.+++|+..+++
T Consensus 404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9987 4445 4556677766777788999999998876 1122 456789999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
...+.|.+..++..++-.|...|+++.|.+.|.+..-..
T Consensus 481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998876543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=6.5e-11 Score=103.51 Aligned_cols=198 Identities=13% Similarity=0.000 Sum_probs=156.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
....+..+...|...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345677777888888888888888887654 345677778888888899999999998888764 3345667777788
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a 412 (471)
+...|++++|.+.++..............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999998754222233456777888899999999999999988 4444 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
...+++..+..+.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998887766777778888899999999999998887653
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=4.1e-13 Score=85.04 Aligned_cols=50 Identities=26% Similarity=0.549 Sum_probs=46.6
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
||+.+||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.5e-09 Score=96.99 Aligned_cols=337 Identities=12% Similarity=0.076 Sum_probs=197.2
Q ss_pred cCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH--HHHHHHhccCCchHHHH
Q 012101 67 LNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP--IVLKASCQLFALEIGRQ 142 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 142 (471)
.|....|...|..... +..-.+|-.|... ..+.+. ...... |.+.|...+. .+..++-.....+++.+
T Consensus 177 ~~~~s~A~~sfv~~v~~~P~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 177 LGLLSLAIDSFVEVVNRYPWFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred hchHHHHHHHHHHHHhcCCcchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888776543 2232233333322 222222 222221 1222222221 12345555556777777
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc------chHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL------GSWNAIIAGLSQDGRAKEAIDMFIGLKKC 216 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 216 (471)
-.+.....|++-+...-+....+.-...|+++|+.+|+++.+.|+ .+|+.++-. +..+- .+.++.+-.-.
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~v~~ 324 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQNVSN 324 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHHHHH
Confidence 777777777666665555555556667788888888887765543 356555533 22211 12222111111
Q ss_pred CCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhH
Q 012101 217 GFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSW 293 (471)
Q Consensus 217 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 293 (471)
--+--+.|...+.+-|+-.++.++|...|+.. ++-+. .....|+.+..-|...++...|..-++...+ .|-..|
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRA--LkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRA--LKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHH--HhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 01223346666777777777777777777777 44432 2355677777777777777777777776654 455677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR 373 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 373 (471)
--+.++|.-.+.+.-|+-+|++..+.. +-|...+.+|..+|.+.++.++|++.|.....- | ..+...+..|.+.|.+
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEE 478 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHH
Confidence 777777777777777777777777652 335667777777777777888888877777553 2 2344567777777777
Q ss_pred cCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 374 AGLLEEARAMVEGM-------P-MKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++.++|...|+.. | +.|. ..+..-|..-+.+.+++++|..+......
T Consensus 479 l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77777777776654 2 2221 12222244555666777766665554443
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=1.1e-09 Score=105.16 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVL 433 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 433 (471)
..|..||+.++...+.+.|..+.++. .+..|..-+..+.+...+.+....+..+++++.+.-... ..+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 56788999999999999999999988 344566778888899999999999999999998743222 2345567
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
.+..+..|+.+.-.++.+-+...|+.. .|--|.-+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~vh 606 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWMVH 606 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh-cccceEEE
Confidence 777788899999999999888888765 34444433
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.1e-12 Score=81.80 Aligned_cols=50 Identities=30% Similarity=0.618 Sum_probs=45.7
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998875
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=2.5e-10 Score=107.33 Aligned_cols=233 Identities=19% Similarity=0.211 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh---cC-CCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCC---------
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVK---SK-QKSDT-LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------- 287 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 287 (471)
..+...+...|...|+++.|+.+++...+.- .| ..|.. ...+.+...|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556667777888888888888887763220 11 11111 1233466678888888888888887653
Q ss_pred -CC-HhhHHHHHHHHHhCCChhHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHHhcC--
Q 012101 288 -PN-VSSWTSMIVGYAANGLANEALDCFHYMRE-----SGI-RPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQ-- 356 (471)
Q Consensus 288 -~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 356 (471)
|. ..+++.|...|.+.|++++|..++++..+ .|. .|... -++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 21 24677777888888988888877776543 122 22222 355666778889999999999887765433
Q ss_pred CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 012101 357 IEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE- 421 (471)
Q Consensus 357 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 421 (471)
..++ ..+++.|...|...|++++|.++++.. +..+ ....++.+..+|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 356889999999999999999999987 1223 245788899999999999999999987654
Q ss_pred ---cCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 422 ---LEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 422 ---~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
.+|..+ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455554 368889999999999999999988775
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.3e-09 Score=105.47 Aligned_cols=261 Identities=11% Similarity=0.016 Sum_probs=183.7
Q ss_pred CcchHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHc---------CcCCHHHHHHHHHHHHH
Q 012101 186 KLGSWNAIIAGLSQ-----DGRAKEAIDMFIGLKKCGFEPD-DVTMVSVTSACG---------SLGDLELALQVHKYVFQ 250 (471)
Q Consensus 186 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~---------~~~~~~~a~~~~~~~~~ 250 (471)
+...|...+.+-.. .++.++|+..|++..+. .|+ ...+..+..++. ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A-- 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA-- 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH--
Confidence 34455566655322 23467999999999876 454 444544444332 335588999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-H
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH-V 326 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~ 326 (471)
++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|...+++..+.. |+. .
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 5543 33677888888999999999999999998765 4 45678888899999999999999999998864 442 2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGAC 403 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~ 403 (471)
.+..++..+...|++++|...++++.+.. .| +...+..+..++...|+.++|...++++ ...|+.. ..+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 33334445666899999999999986541 34 3445677888899999999999999998 5556544 455555667
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
...| +.+...++++.+.....+..+..+...|.-.|+-+.+..+ +++.+.+.
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7777 4788878777664422222233366667777777777766 77777643
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=6.2e-08 Score=92.47 Aligned_cols=285 Identities=11% Similarity=0.047 Sum_probs=198.7
Q ss_pred HhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh-c----
Q 012101 61 CTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC-Q---- 133 (471)
Q Consensus 61 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~---- 133 (471)
+.. .|+++.|+..++.... .+...........+.+.|+.++|..+|..+.+.+ |+...|...+..+. -
T Consensus 14 l~e---~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEE---AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHH---CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 555 7889999999987543 2334456667888999999999999999999876 66666655555444 1
Q ss_pred -cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChh-hHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHHH
Q 012101 134 -LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFE-KARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDMF 210 (471)
Q Consensus 134 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~ 210 (471)
..+.+...++++.+.+.- |.......+.-.+.....+. .+...+..+..++++ +|+.+-..|......+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 224677788888887643 33333333322222323343 344555666677776 5666666666555555566666
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 211 IGLKKC----G----------FEPDD--VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 211 ~~m~~~----g----------~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
...... | -+|+. .++..+...|...|++++|.++.+.. +... +..+..|..-...|-+.|+
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a--I~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA--IEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--HhcC-CCcHHHHHHHHHHHHHCCC
Confidence 665532 1 12333 24456677788999999999999988 5554 3347788889999999999
Q ss_pred hHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH--------HHHHHHHhccCCcHHH
Q 012101 275 MDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT--------FVGVLSACVHGGKVQE 343 (471)
Q Consensus 275 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--------~~~ll~~~~~~~~~~~ 343 (471)
+.+|.+..+.... .|-..-+-.+..+.+.|++++|.+++......+..|-... ......+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999998876 3445566678888999999999999999887765443322 1334567889999999
Q ss_pred HHHHHHHhHHhc
Q 012101 344 GKHFFEMMKNVY 355 (471)
Q Consensus 344 a~~~~~~~~~~~ 355 (471)
|++.|..+.+.+
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999998886653
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=5.7e-09 Score=91.10 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=99.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (471)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++.. .... +.+...+..+...
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRA--LTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhhC-CCCHHHHHHHHHH
Confidence 45666666666677777777776665542 333455555566666666666666666665 3332 1233344445555
Q ss_pred HHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
+...|++++|.+.|++. ......| ....+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQA-------------------------------IEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHHH-------------------------------HhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544 3321111 122333344444555555555555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+.+..... +.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|..+.+.+.+
T Consensus 158 ~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 158 LTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55554321 112334444555555555555555555554 2122 333444445555555666666555555443
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.8e-07 Score=82.92 Aligned_cols=368 Identities=13% Similarity=0.015 Sum_probs=193.6
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCC--chHHHHH-------------HHHHHHCC-
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEA--PKKALDI-------------YIFMSRAG- 116 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~-------------~~~m~~~g- 116 (471)
.-...+..|.. .++-..|.....++|.+....--|.++..+-+.|. .+..... +.-..+.+
T Consensus 99 ~~r~~aecy~~---~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 99 QRRRAAECYRQ---IGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHHH---HccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 33445556666 56678888888888765444445555555544442 1221111 11111111
Q ss_pred --------------CCCCcchHHHHHHHHhc--cCCchHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhcCChhhHHHHh
Q 012101 117 --------------VLPDCYTLPIVLKASCQ--LFALEIGRQLHSLAVRLG-LESNEFCESGFISLYSKAGDFEKARKVF 179 (471)
Q Consensus 117 --------------~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 179 (471)
++|+..+....+.++++ .++-..+.+.+-.+.... ++.|+.....+.+.+...|+.++|.-.|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 12333333334443332 233333333333333322 4455556666666777777777777777
Q ss_pred ccCCCCCcch---HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 180 DENPERKLGS---WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 180 ~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
++...-|+.+ ...-.-.+.+.|+.+....+...+.... .-....|..-.......++++.|..+-+.. +... +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~--I~~~-~ 331 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKC--IDSE-P 331 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHH--hccC-c
Confidence 6644333321 1222223345566666655555554321 122222322233334455666666666555 3222 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH-
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL- 332 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll- 332 (471)
-+...+-.-..++...|+.++|.-.|+.... -+...|.-++.+|...|++.+|.-+-+..... ++.+..+...+-
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 1233344444556666777777776765543 34567777777777777777776665554433 233444443331
Q ss_pred HHh-ccCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 012101 333 SAC-VHGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 333 ~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
..| -....-++|.++++.-. .+.|+- ...+.+...+...|..+++..++++. ...||....+.|.+.+...+.+
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred eeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhH
Confidence 122 22233466666666655 234542 23445556666777777777777776 6667777777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCchHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
.+|...|....+.+|.+..+..
T Consensus 488 Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHHHHHHHHHhcCccchHHHH
Confidence 7777777777777776554433
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.2e-08 Score=93.61 Aligned_cols=271 Identities=14% Similarity=0.085 Sum_probs=177.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
-..-..-+...+++++..++++...+.. ++....+..-|.++...|+..+-..+-.++++. .|....+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3344455666788888888888887764 556666666677777777777777777777664 35666777777777777
Q ss_pred cCChhhHHHHhccCCCCCc---chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 169 AGDFEKARKVFDENPERKL---GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
.|+..+|++.|.+...-|. ..|-.....|+-.|..+.|+..|...-+. ++...-.+.-+.--|.+.++.+.|.+.|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 7888888888877554443 37888888888888888888877665543 1222222334445567778888888888
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC------C----CHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ------P----NVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
.+. .. -.+.|+.+.+-+.-.....+.+.+|..+|+.... + -..+++.+..+|.+.+.+++|+..+++
T Consensus 404 ~~A--~a-i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 404 KQA--LA-IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHH--Hh-cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 776 32 2344666777777777777778888877776542 1 123455566666666666777766666
Q ss_pred HHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 316 MRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
..... +-|..++.++.-.|...|+++.|.+.|.+.. .+.|+..+...++.
T Consensus 481 aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 481 ALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLK 530 (611)
T ss_pred HHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHH
Confidence 66542 3355566666666666666666666666665 45666555544444
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.7e-08 Score=87.33 Aligned_cols=218 Identities=9% Similarity=-0.004 Sum_probs=170.8
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 012101 197 LSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMD 276 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 276 (471)
+.-.|+...|..-|+..+.....+ ...|..+...|....+.++..+.|... .+-+ +-|+.+|.--.+.+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A--~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKA--EDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHH--HhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 344688999999999998875333 333778888899999999999999988 4433 335667777777788889999
Q ss_pred HHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 277 LAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 277 ~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+|..=|++....+ +..|-.+--+..+.+++++++..|++.+++ ++--...|+.....+...+++++|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999988743 445555555666788999999999999886 455577899999999999999999999999875
Q ss_pred hcCCCCC---------hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 354 VYQIEPR---------FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 354 ~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
. .|+ +.+-..++..-. .+++..|.++++.. .+.| ....|..|...-.+.|+.++|+++|++...+
T Consensus 491 L---E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 L---EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred h---ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 343 222223333333 38999999999998 7777 5679999999999999999999999988765
Q ss_pred C
Q 012101 423 E 423 (471)
Q Consensus 423 ~ 423 (471)
-
T Consensus 567 A 567 (606)
T KOG0547|consen 567 A 567 (606)
T ss_pred H
Confidence 4
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=4.8e-09 Score=103.26 Aligned_cols=206 Identities=10% Similarity=-0.100 Sum_probs=102.1
Q ss_pred ChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 171 DFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
++++|...+++..+. +..+|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 355666666554332 33355555555666666666666666666553 23344555555566666666666666666
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
. ...... +...+..++..+...|++++|...+++..+ | +...+..+..++...|+.++|...+.++... .|
T Consensus 398 A--l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~ 472 (553)
T PRK12370 398 C--LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EI 472 (553)
T ss_pred H--HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cc
Confidence 6 333222 111222233334455666666666665432 2 2333455555666666666666666665443 33
Q ss_pred CHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 324 NHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 324 ~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+..+. +.+...|...| +.|...++.+.+...-.+....+ +-..|.-.|+.+.+..+ +++
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKF 532 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHh
Confidence 33322 23333444444 35555555554432223322222 22333444555544444 444
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=3.6e-09 Score=99.60 Aligned_cols=233 Identities=14% Similarity=0.141 Sum_probs=172.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHcCcCCHHHHHHHHHHHHHhhcC----CCC
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKC-----G-FEPDDVTM-VSVTSACGSLGDLELALQVHKYVFQVKSK----QKS 257 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 257 (471)
+...+...|...|++++|..++++..+. | ..|...+. +.+...|...+++.+|..+|+.+.++... ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555888899999999999988877654 2 13444333 34677788899999999999988543331 112
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHhcCC----------CCH-hhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCC
Q 012101 258 -DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----------PNV-SSWTSMIVGYAANGLANEALDCFHYMRES---GIR 322 (471)
Q Consensus 258 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~ 322 (471)
-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.+...++..+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 234677778889999999988877766543 233 24566778888999999999999876542 122
Q ss_pred CC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhc----C-CCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 012101 323 PN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVY----Q-IEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM----- 387 (471)
Q Consensus 323 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m----- 387 (471)
++ ..+++.+...|.+.|++++|.++++++.... | ..+. ...++.|...|.+.+++++|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578899999999999999999999887642 1 1222 345678888999999999999988876
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 388 ---PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 388 ---~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+..|+. .+|..|...|.+.|+++.|+++.+.+.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334554 5899999999999999999999988864
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.5e-07 Score=79.51 Aligned_cols=389 Identities=12% Similarity=0.029 Sum_probs=210.2
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRL 95 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~ 95 (471)
-.|-|..+...++...+..+..+..-++-..... +.-=+...+.+ .|++++|..++..+.. .++...|-.+...
T Consensus 25 K~P~Ledfls~rDytGAislLefk~~~~~EEE~~-~~lWia~C~fh---LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 25 KMPELEDFLSNRDYTGAISLLEFKLNLDREEEDS-LQLWIAHCYFH---LGDYEEALNVYTFLMNKDDAPAELGVNLACC 100 (557)
T ss_pred cCchHHHHHhcccchhHHHHHHHhhccchhhhHH-HHHHHHHHHHh---hccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence 4556788888888888777777665555433322 22223344566 7889999988876654 3555667777777
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 96 YTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
+.-.|.+.+|..+-.+..+ ++---..++....+.++-++-..+.+.+... ..-.-+|.....-.-.+++|
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHH
Confidence 7778888888887665422 3333444556667777777766666665431 12223344444444567888
Q ss_pred HHHhccCCCCC--cchHHH-HHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHcCc--CCHH----------
Q 012101 176 RKVFDENPERK--LGSWNA-IIAGLSQDGRAKEAIDMFIGLKKCGFEPDD-VTMVSVTSACGSL--GDLE---------- 239 (471)
Q Consensus 176 ~~~~~~~~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~--~~~~---------- 239 (471)
.+++.+....+ ....|. +.-+|.+..-++-+.+++.-..+. .||+ ...+....-..+. |+..
T Consensus 171 IdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN 248 (557)
T KOG3785|consen 171 IDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADN 248 (557)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhc
Confidence 88888765433 334443 334566777777777777766654 3443 2222222111111 1111
Q ss_pred ------HHHHHHHHHHHhhcCCC------C-----ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhH---------
Q 012101 240 ------LALQVHKYVFQVKSKQK------S-----DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSW--------- 293 (471)
Q Consensus 240 ------~a~~~~~~~~~~~~~~~------~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 293 (471)
.+..+.+.-.-+-.+.+ | -+..--.|+--|.+.+++.+|..+.+++....+.-|
T Consensus 249 ~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 249 IDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAA 328 (557)
T ss_pred ccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 11111110000000000 0 011122234446677788888777777654222221
Q ss_pred ----------------------------------HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 294 ----------------------------------TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 294 ----------------------------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
.++...+.-..++++++-+++..+.-=..-|.+.| .+.++++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 22333333344445555444444433222222222 3445566667
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYG-CMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCL-MGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~ 417 (471)
.+.+|+++|-.+... .+ .|..+|. .|.++|.+++.++.|+.++-.+....+..++-.+ .+-|.+.+.+--|.+.|+
T Consensus 408 ny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 408 NYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred ChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777777777766421 22 2334443 4556777777777777777777544344444333 356777777777777777
Q ss_pred HHHhcCCC
Q 012101 418 HLQELEPW 425 (471)
Q Consensus 418 ~~~~~~~~ 425 (471)
.+..++|.
T Consensus 486 ~lE~lDP~ 493 (557)
T KOG3785|consen 486 ELEILDPT 493 (557)
T ss_pred HHHccCCC
Confidence 77777663
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=2.8e-09 Score=91.21 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=128.5
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 012101 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG 270 (471)
Q Consensus 191 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (471)
+-+.++|.+.|.+.+|...|+.-.+. .|-+.||..+-+.|.+..+++.|..++.+- ++ .++-++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~g--ld-~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEG--LD-SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhh--hh-cCCchhhhhhhhHHHHH
Confidence 45677777888888888777776665 566667777777777777777777777765 32 22333333344455555
Q ss_pred hcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
..++.++|.++|+...+ .++....++..+|.-.++++-|+.+|+++...|+. +...|+.+--+|...++++-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 55666666666665544 33344444455555566666666666666666544 444455555555555666655555
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
|.+.... --.|+. -...|..+.......||+..|.+.|+-....++.+.
T Consensus 381 f~RAlst-at~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 381 FQRALST-ATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHHHhh-ccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 5555332 111221 112333344444444555555555555555555555
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
..++.|...-.+.|++++|..++......
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 55555555555555555555555554443
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.16 E-value=5.2e-07 Score=84.51 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=246.8
Q ss_pred cCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.|+.++|......-- ...+.+.|..+--.+....++++|++.|......+ +-|...+.-+--.-++.|+++.....-
T Consensus 54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 566777877655322 23566788888888888899999999999998765 345667777766678888998888887
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC-----CCcchHH------HHHHHHHcCCChhHHHHHHHHH
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE-----RKLGSWN------AIIAGLSQDGRAKEAIDMFIGL 213 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~------~li~~~~~~~~~~~a~~~~~~m 213 (471)
..+.+.. +.....|..+..++.-.|+...|..+.+...+ ++...|. --.....+.|..++|++.+..-
T Consensus 133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 7777643 34456688888888889999999988876442 2222222 1223456778888888887765
Q ss_pred HHCCCCCCHHHHH-HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChh-HHHHHHHHHHhcCChHHHH-HHHHhcCC--C
Q 012101 214 KKCGFEPDDVTMV-SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTL-MLNSLIDMYGKCGRMDLAY-KVFWEIDQ--P 288 (471)
Q Consensus 214 ~~~g~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~ 288 (471)
... ..|...+. +-...+.+.+++++|..++..+ +... ||.. .|..+..++.+-.+.-++. .+|....+ |
T Consensus 212 e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L--l~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 212 EKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRL--LERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred hhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH--HhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 543 33433333 4455677889999999999988 5443 4444 4444555554333333333 66666554 1
Q ss_pred CHhhHHHHHHHHHh-CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH----HHHHHHHhHHhcC-------
Q 012101 289 NVSSWTSMIVGYAA-NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE----GKHFFEMMKNVYQ------- 356 (471)
Q Consensus 289 ~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~------- 356 (471)
-...-.-+--.... ..-.+..-.++..+.+.|+++-...+..+ |-.....+- +..+...+... |
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~ 361 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDD 361 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccc-cCCCcccc
Confidence 11000000001111 22334555677788888877644443333 322222111 11222222111 1
Q ss_pred ---CCCChhHHH--HHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 357 ---IEPRFAHYG--CMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 357 ---~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
-+|+...|+ .++..|-+.|+++.|...++.. +-.|+.+ .|..=.+.+...|+++.|...+++..+++..+...
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 045555554 5677889999999999999998 7788765 56666788999999999999999999999765544
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 430 YVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
-.--+....++++.++|.++.......|.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 44667778899999999999988877664
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.9e-09 Score=92.14 Aligned_cols=224 Identities=13% Similarity=0.091 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 90 NNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 90 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
+.+-++|.+.|-+.+|.+.|+.-.+. .|-+.||..|-++|-+..++..|..++.+.++. ++-|+.......+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45778889999999999999887765 567788888889999999999999998887763 355555556666778888
Q ss_pred CChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 170 g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
++.++|.++++...+ .++.+...+...|.-.++++-|+.+|+++.+-|+ -+...|+.+.-+|.-.++++.+...|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888999988887543 3455566666777788889999999999888884 566778888888888888888888888
Q ss_pred HHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 247 YVFQVKSKQKS--DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
.. ....-.| -..+|-.+.......|++..|.+.|+-... .+...+|.|.-.-.+.|++++|..+++.....
T Consensus 383 RA--lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RA--LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HH--HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77 4332222 244566677777777888888888876654 33456777777777778888888887776653
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.3e-06 Score=79.54 Aligned_cols=405 Identities=13% Similarity=0.138 Sum_probs=213.3
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHH--HHHH--H
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNI--IRLY--T 97 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l--i~~~--~ 97 (471)
++..-....++.+.. .....++..|++...+..-+-++.+ .+.+++|+.+.+.-+. ..+++.. =.+| .
T Consensus 19 ln~~~~~~e~e~a~k--~~~Kil~~~pdd~~a~~cKvValIq---~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVK--TANKILSIVPDDEDAIRCKVVALIQ---LDKYEDALKLIKKNGA---LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHhccchHHHHHHH--HHHHHHhcCCCcHhhHhhhHhhhhh---hhHHHHHHHHHHhcch---hhhcchhhHHHHHHHH
Confidence 333333344444333 3334455545543255555556666 7889999866554432 1223332 3444 4
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc-chHHHHHHHHHhcCChhhH
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNE-FCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a 175 (471)
+.+..++|+..++ |..++.. +...-...+-+.|++++|..+|+.+.+.+.+... ..-..++.. +---.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhH
Confidence 5788899988887 3333333 5555566778889999999999988765532110 000111100 000111
Q ss_pred HHHhccCCCCCcchHHH---HHHHHHcCCChhHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHcCcCCH
Q 012101 176 RKVFDENPERKLGSWNA---IIAGLSQDGRAKEAIDMFIGLKKCG-------------FEPDDV-TMVSVTSACGSLGDL 238 (471)
Q Consensus 176 ~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~~~~ 238 (471)
. +.+..+.....+|.. ....+...|++.+|+++++...+-+ +.-+.. .-..+.-.+-..|+.
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0 122222211112211 2223344455555555554441110 000000 011122223344555
Q ss_pred HHHHHHHHHHHHhhcCCCCCh----hHH-----------------------------------------------HHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDT----LML-----------------------------------------------NSLID 267 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~----~~~-----------------------------------------------~~l~~ 267 (471)
++|..++..+ ++.... |. ... +.++.
T Consensus 241 ~ea~~iy~~~--i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 241 AEASSIYVDI--IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred HHHHHHHHHH--HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 332211 11 001 11111
Q ss_pred HHHhcCChHHHHHHHHhcCCCC-HhhHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPN-VSSWTSMIVGYA--ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
.| .+.-+.+.++-..+.... ...+.+++.... +...+.++.+++...-+....-........+......|+++.|
T Consensus 318 l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 318 LF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 11 233334444444443311 223333433332 2235777888877776653222234555566677889999999
Q ss_pred HHHHH--------HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcC
Q 012101 345 KHFFE--------MMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-----PMKANVV----IWGCLMGACEKFG 407 (471)
Q Consensus 345 ~~~~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~----~~~~l~~~~~~~~ 407 (471)
.+++. .+.+. + ..+.+...++..+.+.++.+.|..++... .-.+... ++.-+...-.+.|
T Consensus 396 ~~il~~~~~~~~ss~~~~-~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA-K--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhhh-c--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 44322 3 33445667888888888877777777765 1122223 3444444556789
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+.++|..+++++.+.+|.+..+...++.+|++. +.+.|..+=+.+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999998888999999999987 678887776554
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=7.9e-08 Score=90.99 Aligned_cols=235 Identities=19% Similarity=0.242 Sum_probs=159.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
..-+.+.|+++.|+..|-+.. .....+.+.....+|.+|..+++.+ ..... ....|..+.+.|+..|
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildni--qdqk~--~s~yy~~iadhyan~~ 779 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNI--QDQKT--ASGYYGEIADHYANKG 779 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHh--hhhcc--ccccchHHHHHhccch
Confidence 334455667777766664332 2334556667788889999888877 44432 3445777888899999
Q ss_pred ChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 274 RMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+++.|+++|-+.. .++-.|..|.+.|++++|.++-.+.. |.......|..-..-.-+.|++.+|++++-.+.
T Consensus 780 dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 780 DFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred hHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 9999999887653 45667788889999999888765543 444455566666666778888888888876663
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
.|+. .|.+|-+.|..++..++.++-.-.--..|...+..-+-..|+...|+.-|-+..+ |..-
T Consensus 852 ----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaa 914 (1636)
T KOG3616|consen 852 ----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAA 914 (1636)
T ss_pred ----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHH
Confidence 3553 5678888898888888888772122334666677777888888888877654332 5566
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCccCCCcce
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAKIPAYSL 466 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 466 (471)
+++|-..+.|++|.++-+.--..+..+...+-|
T Consensus 915 vnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 915 VNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred HHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 778888888888877765443333333333333
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=1.5e-08 Score=91.39 Aligned_cols=231 Identities=12% Similarity=0.023 Sum_probs=151.3
Q ss_pred HHcCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 197 LSQDGRAKEAIDMFIGLKKCG-FEPD--DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
....+..+.++.-+.++.... ..|+ ...|......+...|+.++|...|++. ++.. +.+...|+.+...|...|
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~A--l~l~-P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQA--LALR-PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHcC-CCCHHHHHHHHHHHHHCC
Confidence 334466778888888887542 2222 345667777788889999999999888 5543 345778888999999999
Q ss_pred ChHHHHHHHHhcCC--C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ--P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|++..+ | +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...|.+
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999988765 3 4567777888888899999999999988875 44433222222223456788999998876
Q ss_pred hHHhcCCCCChhHHHHHHHHHHhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 351 MKNVYQIEPRFAHYGCMVDLLGRAGLLEE--ARAMVEGM-PM----KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 351 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
.... ..|+...+ .+... ..|+... +.+.+... .. .| ...+|..+...+.+.|++++|...|++..+.
T Consensus 191 ~~~~--~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5432 23433222 23332 3444433 33222221 11 12 2347888888899999999999999999988
Q ss_pred CCCCC-chHHHHHHHH
Q 012101 423 EPWSD-GAYVVLSNIY 437 (471)
Q Consensus 423 ~~~~~-~~~~~l~~~~ 437 (471)
+|.+- ..-..+++..
T Consensus 266 ~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 266 NVYNFVEHRYALLELA 281 (296)
T ss_pred CCchHHHHHHHHHHHH
Confidence 86433 2333444443
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=3e-07 Score=87.77 Aligned_cols=399 Identities=13% Similarity=0.070 Sum_probs=257.4
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
.++-|+. +|..|--+..+ .|++..+-+.|++.-. -.....|+.+-..|.-.|.-..|+.+++.-......|+..
T Consensus 318 ~~qnd~a-i~d~Lt~al~~---~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 318 KFQNDAA-IFDHLTFALSR---CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hhcchHH-HHHHHHHHHHH---HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 3456788 99999988888 6778998888887532 2345679999999999999999999998876554334444
Q ss_pred h-HHHHHHHHh-ccCCchHHHHHHHHHHHh--CC--CCCcchHHHHHHHHHhc-----------CChhhHHHHhccCCCC
Q 012101 123 T-LPIVLKASC-QLFALEIGRQLHSLAVRL--GL--ESNEFCESGFISLYSKA-----------GDFEKARKVFDENPER 185 (471)
Q Consensus 123 ~-~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~ 185 (471)
+ +...-..|. +.+..+++..+-.+.+.. +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 3 433344453 356666666666666552 11 12233444444444432 1234566666665433
Q ss_pred ---CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH
Q 012101 186 ---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML 262 (471)
Q Consensus 186 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 262 (471)
|..+...+.--|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.... +.|. |....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~-E~~~--N~~l~ 550 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE-EFGD--NHVLM 550 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-Hhhh--hhhhc
Confidence 33333334445677789999999999998886677888888888888899999999999887731 2222 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-------------------------------CC-HhhHHHHHHHHH---hCCChh
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ-------------------------------PN-VSSWTSMIVGYA---ANGLAN 307 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------~~-~~~~~~li~~~~---~~~~~~ 307 (471)
..-+..-..-++.+++......+.. .+ +.++..+..-.. +.-..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 1111111223344443332221110 01 112221111111 000111
Q ss_pred HHHHHHHHHHHcCCCC--C------HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 308 EALDCFHYMRESGIRP--N------HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 308 ~a~~~~~~m~~~~~~p--~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
.. |....+.| + ...+......+.+.+..++|...+.+.... .......|......+...|..++
T Consensus 631 ~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 631 LK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHH
Confidence 11 11111222 2 123445556678888899999888888643 23344567777788889999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 380 ARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEW--VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 380 A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
|.+.|... .+.|+ ..+..++...+.+.|+...|.. ++..+.+.+|.++..|..++.++-+.|+.++|.+.|....+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999888 77885 4588999999999999888888 99999999999999999999999999999999999988765
Q ss_pred CCC
Q 012101 456 RNL 458 (471)
Q Consensus 456 ~~~ 458 (471)
-..
T Consensus 783 Le~ 785 (799)
T KOG4162|consen 783 LEE 785 (799)
T ss_pred hcc
Confidence 543
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=3e-06 Score=79.47 Aligned_cols=427 Identities=14% Similarity=0.114 Sum_probs=226.1
Q ss_pred hhHHHHHHhhhchhhhhHHHH----hhhccC-CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-Cc--hhhHH
Q 012101 19 HPLLHRLCKTHTFRKHVTISA----ASSFLD-THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-SA--AFHWN 90 (471)
Q Consensus 19 ~~~l~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~~~ 90 (471)
-..+.-++.+.+++.+.+..+ .-++.+ ..++..+.|.-+.+..++.-+.+.--....++.....+ +| ...|+
T Consensus 173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 345666777777766555443 112222 33444558999999888865555444555555554332 33 35799
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC----------------------chHHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA----------------------LEIGRQLHSLAV 148 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~ 148 (471)
+|.+-|.+.|.+++|.++|++..+. ..+..-|..+.++|++... ++....-|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999998765 3355556666666654321 112222233322
Q ss_pred HhC-----------CCCCcchHHHHHHHHHhcCChhhHHHHhcc-------CCCCCcc--hHHHHHHHHHcCCChhHHHH
Q 012101 149 RLG-----------LESNEFCESGFISLYSKAGDFEKARKVFDE-------NPERKLG--SWNAIIAGLSQDGRAKEAID 208 (471)
Q Consensus 149 ~~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-------~~~~~~~--~~~~li~~~~~~~~~~~a~~ 208 (471)
..+ -+.++..|..-+..+ .|+..+-...|.+ ...++.. .|..+.+.|-..|+.+.|..
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 211 011222222222211 2333333333322 1222222 58888888999999999999
Q ss_pred HHHHHHHCCCCCC---HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC---------CCC------ChhHHHHHHHHHH
Q 012101 209 MFIGLKKCGFEPD---DVTMVSVTSACGSLGDLELALQVHKYVFQVKSK---------QKS------DTLMLNSLIDMYG 270 (471)
Q Consensus 209 ~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~------~~~~~~~l~~~~~ 270 (471)
+|++..+-..+.- ..+|......=.+..+++.|.++.+.......+ .++ +..+|...++.--
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9988876543322 234444444445667788888877765211111 111 2334555666666
Q ss_pred hcCChHHHHHHHHhcCCCCHhhHHHHHH---HHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcc---CCcHHH
Q 012101 271 KCGRMDLAYKVFWEIDQPNVSSWTSMIV---GYAANGLANEALDCFHYMRESGIRPNHV-TFVGVLSACVH---GGKVQE 343 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---~~~~~~ 343 (471)
..|-++....+|+++.+.-+.|-..+++ .+-.+.-++++.++|++-...=..|+.. .|+..+.-+.+ ....+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 6778888888888876522222222221 1223344566666665433332234432 33333332221 235677
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHH----HhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLL----GRAGLLEEARAMVEGM--PMKANV--VIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
|..+|++..+ |.+|... ..+.-.| .+.|....|.+++++. ++++.. ..||..|.--...=-+.....+
T Consensus 569 aRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~i 644 (835)
T KOG2047|consen 569 ARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREI 644 (835)
T ss_pred HHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHH
Confidence 7777777765 4444322 2222222 2456666777777776 444322 3566665444333334444555
Q ss_pred HHHHHhcCCCCCc--hHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 416 AKHLQELEPWSDG--AYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 416 ~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
++++.+.-|++.. ...-..+.-.+.|..+.|..++.--
T Consensus 645 YekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 645 YEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 5555554333221 2233444455566666666665443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=7.7e-08 Score=91.84 Aligned_cols=148 Identities=12% Similarity=0.089 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc-------------CCCCChhHH--HHHHHHHH
Q 012101 308 EALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY-------------QIEPRFAHY--GCMVDLLG 372 (471)
Q Consensus 308 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------~~~p~~~~~--~~li~~~~ 372 (471)
.+..++..+..+|+++ +|+.|-..|......+-..+++....... .-.|+...| ..+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556667777788665 45555555665555555555655553321 113444334 55677888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 373 RAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
..|++++|++++++. ...|+ +..|..-.+.+-+.|++.+|.+.++.+.+++..+...-+-.+..+.++|++++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999987 77776 4578888889999999999999999999999877766667788889999999999999
Q ss_pred HHhhcCCC
Q 012101 451 AVMKHRNL 458 (471)
Q Consensus 451 ~~m~~~~~ 458 (471)
......+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.07 E-value=2.3e-06 Score=80.24 Aligned_cols=389 Identities=11% Similarity=0.063 Sum_probs=201.2
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhccc----CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHML----HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
+|-.-+....+ .|++...+..|++. |...-...|...+......|-++.++.++++..+- ++..-.--|
T Consensus 104 Iwl~Ylq~l~~---Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 104 IWLDYLQFLIK---QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred HHHHHHHHHHh---cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 44444444444 44455555555432 22222234555666666666666666666666542 222244555
Q ss_pred HHHhccCCchHHHHHHHHHHHhC------CCCCcchHHHHHHHHHhcCCh---hhHHHHhccCCCC--Cc--chHHHHHH
Q 012101 129 KASCQLFALEIGRQLHSLAVRLG------LESNEFCESGFISLYSKAGDF---EKARKVFDENPER--KL--GSWNAIIA 195 (471)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~--~~--~~~~~li~ 195 (471)
..+++.+++++|.+.+...+... -+.+...|.-+.+..++.-+. -....+++.+..+ |- ..|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 55666666666666666554321 133334455555544443322 2234444444332 11 26888888
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC----------------------HHHHHHHHHHHHHhhc
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD----------------------LELALQVHKYVFQVKS 253 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------------------~~~a~~~~~~~~~~~~ 253 (471)
.|.+.|.+++|.++|++.... ..+...|..+.++|+.-.. ++....-|+.+ ...
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l--m~r 332 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL--MNR 332 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH--Hhc
Confidence 888888888888888887765 3444445555555433211 11122222222 111
Q ss_pred C-----------CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCChhHHHHHH
Q 012101 254 K-----------QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGLANEALDCF 313 (471)
Q Consensus 254 ~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (471)
. .+.++..|..-+. +..|+..+-...|.+..+ .-...|..+.+.|-..|+.+.|..+|
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0111112221111 122444444444444332 11245667777777888888888888
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-----------------ChhHHHHHHHHHHh
Q 012101 314 HYMRESGIRPN---HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-----------------RFAHYGCMVDLLGR 373 (471)
Q Consensus 314 ~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-----------------~~~~~~~li~~~~~ 373 (471)
++..+...+-- ..+|..-...=.+..+++.|.++++..... .-.| +...|...++.-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 77665432211 123333333334556777777777776532 1111 12345566666667
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--chHHHHHHHHHc---CCChHH
Q 012101 374 AGLLEEARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD--GAYVVLSNIYAS---RGLWEE 445 (471)
Q Consensus 374 ~g~~~~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~---~g~~~~ 445 (471)
.|-++....+++++ .+. ++.........+-.+.-++++.+++++-..+.+.+. ..|+..+..+.+ .-..+.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77777777777777 222 222222222233455567788888888777775443 255555544432 236888
Q ss_pred HHHHHHHhhcC
Q 012101 446 VERIRAVMKHR 456 (471)
Q Consensus 446 A~~~~~~m~~~ 456 (471)
|..+|+...+.
T Consensus 569 aRdLFEqaL~~ 579 (835)
T KOG2047|consen 569 ARDLFEQALDG 579 (835)
T ss_pred HHHHHHHHHhc
Confidence 88888888873
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=4.4e-09 Score=93.46 Aligned_cols=250 Identities=14% Similarity=0.087 Sum_probs=163.1
Q ss_pred HHHHhcCChhhHHHHhccCCCC----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 164 SLYSKAGDFEKARKVFDENPER----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
+-+.-.|++..+..-.+ .... +......+.+++...|+++.++. ++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888885444 2221 22245667788888888776543 333333 677777766666665545555
Q ss_pred HHHHHHHHHHHhhcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQK-SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
.+..-++.. ...... .+..+.......+...|++++|.++++.. .+.......+..|.+.++++.|.+.++.|.+
T Consensus 84 ~~l~~l~~~--~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 84 SALEELKEL--LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp CHHHHHHHC--CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHH--HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555444 333323 23333333445667789999999888776 4566667788889999999999999999886
Q ss_pred cCCCCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 012101 319 SGIRPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-N 392 (471)
Q Consensus 319 ~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 392 (471)
. ..| .+...+..++.. .+.+..|..+|+++... ..+++.+.+.+..++...|++++|.+++.+. ...| +
T Consensus 160 ~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 4 333 445555555433 34688999999998654 4577788888888899999999999988886 4445 4
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 012101 393 VVIWGCLMGACEKFGNV-KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 427 (471)
..++..++.+....|+. +.+.+++.++....|..+
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55777778777788877 778888888888887653
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=1e-07 Score=80.74 Aligned_cols=310 Identities=15% Similarity=0.049 Sum_probs=153.1
Q ss_pred CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc--chHHH-
Q 012101 116 GVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL--GSWNA- 192 (471)
Q Consensus 116 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~- 192 (471)
|+.....-+..++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|...++++...-+ .-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333334445666666666667777777776655543 33555566666777777777777777776654322 12211
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSA--CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG 270 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (471)
-...+.+.+.+..|+++...|.+. |+...-..-+.+ ....+++..+..+.++. -..+ +..+.+.......
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl--p~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL--PSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhc--cCCC---ccchhccchheee
Confidence 234455667777777777666542 222221212222 23456666666666554 2111 2333334444455
Q ss_pred hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
+.|+++.|.+-|+...+ .....||..+ +..+.|+++.|+++..++.++|++-.+.. ++ |...+...
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~tegiD 225 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMTTEGID 225 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cceeccCc
Confidence 66777777776666554 3334555443 33455666777777777766665421100 00 00000000
Q ss_pred HHHHhHHhcCCCCChhHHHHHH-------HHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMV-------DLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.+.+ | .|-...-+.++ -.+.+.|+.+.|.+.+-.| ....|++|+..+.-.- ..+++....+-
T Consensus 226 -vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~K 298 (459)
T KOG4340|consen 226 -VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEK 298 (459)
T ss_pred -hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHH
Confidence 0000 0 00000111222 2234556666666666666 1223555554442111 12344444555
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+.-+.+.+|-++.+|..++-.|++..-++-|..++-
T Consensus 299 LqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 299 LQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 555555566566666666666666666666555543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=3.1e-07 Score=82.90 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
|..+...+...|++++|...|++..+.. +.+...|+.+...+...|+++.|...|+.. ++.. +.+..++..+..++
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A--l~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSV--LELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHH
Confidence 4444444444455555555554444432 223344444444445555555555555444 2221 11233344444444
Q ss_pred HhcCChHHHHHHHHhcC
Q 012101 270 GKCGRMDLAYKVFWEID 286 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~ 286 (471)
...|++++|.+.|++..
T Consensus 143 ~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 143 YYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44455555555444443
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.9e-06 Score=74.64 Aligned_cols=267 Identities=12% Similarity=0.018 Sum_probs=191.0
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT-MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN 263 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
.|+.....+...+...|+.++|+..|++.+-. .|+..+ ...-.-.+.+.|+.+....+...+ .... ..+...|-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L--f~~~-~~ta~~wf 304 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYL--FAKV-KYTASHWF 304 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHH--Hhhh-hcchhhhh
Confidence 46667888888999999999999999887754 343322 111122235677777777776666 2211 11222333
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
.-+......++++.|..+-++..+.|. ..+-.-...+...|++++|.-.|+...... +-+...|..|+++|...|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 334445566788889888888776443 334333456778899999999999887642 3467899999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMV-DLLGR-AGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+.+|.-.-+...+.. .-+..+.+.+. ..+.. -..-++|.++++.. .+.|+.. ..+.+...|...|..+.+..++
T Consensus 384 ~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 999887777665532 34445554442 33332 33457899999988 8888754 7777888899999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 417 KHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++.....+ +......|++.+...+.+++|.+.|......+++.
T Consensus 462 e~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99998877 56788999999999999999999999888776654
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=3.4e-08 Score=87.84 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=95.3
Q ss_pred HHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHcCcCCHH
Q 012101 161 GFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEP-DDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 239 (471)
-+.+++...|+.+.+..-...-..|.......+...+...++-+.++.-+++....+..+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344555556665555544444444444444334333332233344444443333222221 2222222223345556666
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-HhhHHHHHHHH----HhCCChhHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN-VSSWTSMIVGY----AANGLANEALDCFH 314 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~----~~~~~~~~a~~~~~ 314 (471)
.|.++++ .+ .+.......+..|.+.++++.|.+.++.|.+.+ -.+...+..++ ...+.+.+|..+|+
T Consensus 120 ~AL~~l~------~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 120 EALKLLH------KG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HHHCCCT------TT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHHH------cc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5555532 11 234444555566666666666666666655411 11122222222 22234566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 012101 315 YMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL-EEARAMVEGM 387 (471)
Q Consensus 315 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 387 (471)
++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +-+..+...++.+....|+. +.+.+.+..+
T Consensus 192 El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 192 ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 65443 34555555555556666666666666665554321 22233444455555555555 4455555555
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=7.7e-08 Score=78.70 Aligned_cols=191 Identities=13% Similarity=-0.027 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
..-|.-.|...|++..|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++..... +-+....|..-.-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 334444555666666666666555542 22355555555556666666666666555432 11233344444444555
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
|++++|.+.|+.........-...+|..+.-+..+.|+.+.|.+.|++. ...|+ ..+.-.+.....+.|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 5666666666655544222222345555555555556666666555555 33332 234445555555555666665555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 417 KHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 417 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+.....++.+.......+..-.+.|+-+.+-++=..+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5555554434444444444445555555555443333
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.98 E-value=4.7e-06 Score=78.33 Aligned_cols=393 Identities=12% Similarity=0.057 Sum_probs=241.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
.|...+..|-..--...+..+..++...+..+++.+.-- -.+...|+-++|.+....-...++. +.+.|+.+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkG--L~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKG--LTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhcc--chhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHh
Confidence 444555555431001113334444444444444322211 1234568888998888777665433 6677887777778
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
...++++|.+.|......+ +.|...+.-|.-.-++.|+++........+.+ .....|..+..++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988765 55666777666666777888777666655443 3445788888899999999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHH------HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012101 210 FIGLKKCG-FEPDDVTMVSVTS------ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVF 282 (471)
Q Consensus 210 ~~~m~~~g-~~p~~~~~~~li~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (471)
++...+.. -.|+...+.-... .....|.++.|.+.+... . ..+.-....-..-.+.+.+.+++++|..++
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~--e-~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN--E-KQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh--h-hHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99888764 2466665553322 235667777777766544 2 222222333345567788999999999999
Q ss_pred HhcCC--CCHhhHHHHH-HHHHhCCChhHHH-HHHHHHHHcCCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCC
Q 012101 283 WEIDQ--PNVSSWTSMI-VGYAANGLANEAL-DCFHYMRESGIRPNHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 283 ~~~~~--~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (471)
..+.. ||-..|.... .++.+..+.-++. .+|....+. .|....- ..=+.......-.+...+++....++ |+
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K-g~ 319 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK-GV 319 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc-CC
Confidence 98876 5555555544 4443333334444 666665554 1211111 11111112222333444555555454 66
Q ss_pred CCChhHHHHHHHHHHhcCCHHH----HHHHHHhC-C------------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEE----ARAMVEGM-P------------MKANVVI--WGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
++- +..+...|-.-...+- +..+...+ + -+|.... +..+...+-+.|+++.|+..++.
T Consensus 320 p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 443 3334443332222221 22222222 1 1455554 45567888899999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 419 LQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 419 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..+.-|.-...|..-+.++...|++++|..++++.++-+.
T Consensus 397 AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 397 AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9998887777888888999999999999999999987654
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=6.1e-07 Score=78.02 Aligned_cols=371 Identities=12% Similarity=0.066 Sum_probs=204.2
Q ss_pred CchHHHHHHhcccCC-----CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHH
Q 012101 68 NQIYAHIIRTHMLHS-----YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.++..|+.+++.-.. ..++. -.+..++.+.|++++|+..++.+.+.. .|+...+..+.-+..-.|.+.+|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~--lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQ--LWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHH--HHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 556677776653321 12222 235567788999999999999988754 4566666666655566778888887
Q ss_pred HHHHHHHhCCCCCcchHH-HHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 012101 143 LHSLAVRLGLESNEFCES-GFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD 221 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (471)
+-.. .|+....+ .|+..-.+.++-++-..+-+.+.... .---+|.+.....-.+++|+++|.+.... .|+
T Consensus 113 ~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 7665 33444444 44455556677666665555544321 22233444444455789999999999876 566
Q ss_pred HHHHHHHHHH-HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh--cCChHHHH--HHHHhcCC---------
Q 012101 222 DVTMVSVTSA-CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK--CGRMDLAY--KVFWEIDQ--------- 287 (471)
Q Consensus 222 ~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~--~~~~~~~~--------- 287 (471)
-...+.-+.. |.+..-++-+.++++-. +.. ++.++...|.......+ +|+..+++ .+-+...+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vY--L~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~ 260 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVY--LRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLC 260 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHH--HHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHH
Confidence 6666655544 46777777777777665 332 33334444433332222 22222211 11111110
Q ss_pred -----------------CC-----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cc----CCc
Q 012101 288 -----------------PN-----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC-VH----GGK 340 (471)
Q Consensus 288 -----------------~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~----~~~ 340 (471)
|. +..--.++--|.+.+++.+|..+.+++.. ..|-......+..+- .+ ...
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHH
Confidence 11 11222344557888999999988876543 244444444433321 11 112
Q ss_pred HHHHHHHHHHhHHhcCC------------------------------------CCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQI------------------------------------EPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
..-|.+.|+..-+. +. ..|...+ .+.++++..|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 23344444433211 11 1122222 3556777778888888887
Q ss_pred HhC-CCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 385 EGM-PMK-ANVVIWGC-LMGACEKFGNVKMGEWVAKHLQELEPWSD-GAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 385 ~~m-~~~-p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
-+. +.+ .|..+|.+ |.++|.+.+.++.|..++-++.. |... +....+.+-|.+++.+--|.+.|..+...++.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 777 222 24555544 44667777777777666533211 2111 12334556677777777777777777665553
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.4e-06 Score=73.99 Aligned_cols=384 Identities=10% Similarity=0.009 Sum_probs=233.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH-HHHH
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIV-LKAS 131 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~ 131 (471)
.+++..+.+ -.++.+|++++....++ .+......+-.+|-...++..|-+.++++-.. .|...-|..- ...+
T Consensus 14 taviy~lI~---d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 14 TAVVYRLIR---DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 455555566 56688888877655432 36667778888888999999999999998764 4555545432 2345
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHH--HHHHhcCChhhHHHHhccCCC-CCcchHHHHHHHHHcCCChhHHHH
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFI--SLYSKAGDFEKARKVFDENPE-RKLGSWNAIIAGLSQDGRAKEAID 208 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~ 208 (471)
-+.+.+..|..+...|... ++...-..-+ ...-..+|+..+..+.++.+. .+..+.+.......+.|++++|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 5677888888888877542 2221111111 122356889999999999984 556666777777788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC-------------Chh---------------
Q 012101 209 MFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS-------------DTL--------------- 260 (471)
Q Consensus 209 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~--------------- 260 (471)
-|+...+-|---....|+..+. ..+.++.+.|.+...++ +.+|+.. |+.
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEI--ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEI--IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHH--HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 9988877554444567776554 45678999999999998 7766531 111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.+|.-...+.+.|+++.|.+.+-.|.. .|++|...+.-. -..+++.+..+-+.-+.+.+. -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 122223345678999999999999975 566666554322 123455555555555555543 3467888899999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHH--
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG-RAGLLEEARAMVEGMPMKAN--VVIWGCLMGACEKFGNVK-- 410 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~--~~~~~~l~~~~~~~~~~~-- 410 (471)
|++.-++.|-.++.+-....-.-.+...|+. ++++. -.-.+++|.+-++.+..... .....+-++--...++-.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 9999999988887664321001123344443 33333 34566777666655510000 011111111111222211
Q ss_pred -HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 411 -MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 411 -~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+.+-+++..++-. .....-.+.|.+..++..++++|+.-.+
T Consensus 400 R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 400 RKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 12222222222221 1234455667788899999999887654
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=5.5e-06 Score=77.51 Aligned_cols=197 Identities=11% Similarity=-0.056 Sum_probs=105.7
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch---HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT---LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESG 161 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (471)
....|..+...+...|+.+.+...+....+.. +++... .......+...|+++.|...+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 34456666666666777777766666655432 122221 1112234566778888888888877653 333333331
Q ss_pred ---HHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCc
Q 012101 162 ---FISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSL 235 (471)
Q Consensus 162 ---ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (471)
+.......+..+.+.+.++.....+.. ....+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 111112234455555555442222221 23344456666777777777777776653 33445556666666777
Q ss_pred CCHHHHHHHHHHHHHhhcCC-CCCh--hHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 236 GDLELALQVHKYVFQVKSKQ-KSDT--LMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
|++++|...++.. ..... .++. ..|..+...+...|++++|..++++..
T Consensus 162 g~~~eA~~~l~~~--l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESW--RDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhh--hhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777666 33221 1121 223345555666666666666666543
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.5e-05 Score=74.32 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 376 LLEEARAMVEGM-PMKAN--VVIWGCLMGACEKFGNVKMGEWVAK--------HLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 376 ~~~~A~~~~~~m-~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
.+.+|.+++... .-.|+ ..+.-..++.....|+++.|.+++. .+.+.+. .|.+-..+...|.+.++.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~-~P~~V~aiv~l~~~~~~~~ 434 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH-LPGTVGAIVALYYKIKDND 434 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc-ChhHHHHHHHHHHhccCCc
Confidence 466777777776 33443 3455555666778888888888888 4444443 3456666777777777766
Q ss_pred HHHHHHHHhh
Q 012101 445 EVERIRAVMK 454 (471)
Q Consensus 445 ~A~~~~~~m~ 454 (471)
.|..++.+..
T Consensus 435 ~a~~vl~~Ai 444 (652)
T KOG2376|consen 435 SASAVLDSAI 444 (652)
T ss_pred cHHHHHHHHH
Confidence 6666665553
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=3.7e-06 Score=78.68 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHh
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPNH--VTFVGVLSAC 335 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~ 335 (471)
...+...+...|++++|...+++..+ .+...+..+...+...|++++|..++++..+... .|+. ..+..+...+
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 33444556666677777666666554 2344555666666677777777777766655321 1222 2233455566
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHH-H--HHHHHHHhcCCHHHHHHH---HHhC--C--CCCCHHHHHHHHHHHHh
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHY-G--CMVDLLGRAGLLEEARAM---VEGM--P--MKANVVIWGCLMGACEK 405 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m--~--~~p~~~~~~~l~~~~~~ 405 (471)
...|++++|..++++........+..... + .++.-+...|....+.++ .... . .............++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 66777777777777664221111111111 1 122222233322222221 1111 1 01111222345667778
Q ss_pred cCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPW---------SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|+.+.|..+++.+...... ..........++...|++++|.+.+......
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887653321 1123334555677889999999988877654
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.90 E-value=5.3e-06 Score=79.56 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=72.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
|......+.+.+..++|...+.+. ++.| ....|......+...|+.++|.+.|.....++|.++.....++.++.+.|
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344455566666777776555555 4444 34456666666777888888888888888888888888888888988888
Q ss_pred ChHHHHH--HHHHhhcCCCccCCCc
Q 012101 442 LWEEVER--IRAVMKHRNLAKIPAY 464 (471)
Q Consensus 442 ~~~~A~~--~~~~m~~~~~~~~~~~ 464 (471)
+-.-|.. ++..+.+.+......|
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHH
Confidence 7777777 8888887776654443
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=1.2e-06 Score=71.93 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=106.9
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDM 268 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (471)
+...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|+.+.|.+.|+.. ++.. +-+..+.|...-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA--lsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKA--LSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHH--HhcC-CCccchhhhhhHH
Confidence 34556667777777777777777776653 334456666666777777777777777766 3332 2244556666666
Q ss_pred HHhcCChHHHHHHHHhcCC-CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQ-PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
+|..|++++|...|++... |+ ..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchH
Confidence 6666666666666665543 22 2455555555556666666666666655542 1123344445555555566666
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
|...++..... ..++..+.-..|+.-.+.|+-+.+-+.
T Consensus 192 Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 192 ARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 66666555433 225544444444444445554444443
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=4.3e-06 Score=88.55 Aligned_cols=326 Identities=13% Similarity=0.025 Sum_probs=199.4
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC----CCC---c---c--hHHHHHHHHHc
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP----ERK---L---G--SWNAIIAGLSQ 199 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~---~---~--~~~~li~~~~~ 199 (471)
...|+++.+..+++.+.......+..........+...|+++++..+++... ..+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 3456666666665554211112223333444555667889999888876532 111 1 1 12223345567
Q ss_pred CCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhc
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKC 272 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 272 (471)
.|++++|...+++....-...+. ...+.+...+...|+++.|...+++.......... .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111221 23345555667889999999998887322221111 123445567778889
Q ss_pred CChHHHHHHHHhcCC-------CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC--HHHHHHHHHHhcc
Q 012101 273 GRMDLAYKVFWEIDQ-------PN----VSSWTSMIVGYAANGLANEALDCFHYMRES--GIRPN--HVTFVGVLSACVH 337 (471)
Q Consensus 273 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~ll~~~~~ 337 (471)
|++++|...+++... ++ ...+..+...+...|++++|...+.+.... ...+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988876543 11 223444556677789999999998887543 11122 2334445566778
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHH-----HHHHHHHHhcCCHHHHHHHHHhC-CCC-CCH----HHHHHHHHHHHhc
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHY-----GCMVDLLGRAGLLEEARAMVEGM-PMK-ANV----VIWGCLMGACEKF 406 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~----~~~~~l~~~~~~~ 406 (471)
.|+.+.|...+...............+ ...+..+...|+.+.|.+++... ... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 899999999888875431111111111 11224455689999999998776 211 111 1244566778899
Q ss_pred CCHHHHHHHHHHHHhcC----CC--CCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 407 GNVKMGEWVAKHLQELE----PW--SDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|+.++|...++++.... .. ...+...+..+|.+.|+.++|.+.+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887642 11 11255677788899999999999988886543
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=8.5e-06 Score=70.82 Aligned_cols=290 Identities=12% Similarity=0.065 Sum_probs=164.7
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcchHHHHH---HHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHcCcCC
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLGSWNAII---AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTM-VSVTSACGSLGD 237 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~ 237 (471)
|-..+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+. +||-..- ..-...+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 334445556666666666666666665555443 3556666666666666666554 5553221 122233456667
Q ss_pred HHHHHHHHHHHHHhhcCCCC--Chh------------HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKS--DTL------------MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGY 300 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~--~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 300 (471)
+++|..-|+.+ ++....- ... .....+..+...|+...|+.....+.+ .|...|..-..+|
T Consensus 122 le~A~~DF~~v--l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQV--LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHH--HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 77777666666 4333211 111 111223345556777777777666654 5666666777777
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHH----HHH---H-----
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY----GCM---V----- 368 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~----~~l---i----- 368 (471)
...|.+..|+.=++...+.. .-+..++-.+-..+...|+.+.++...++-. .+.|+-..+ ..+ +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 77777777776666555442 2233344444455556666666666555554 345553221 111 1
Q ss_pred -HHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 369 -DLLGRAGLLEEARAMVEGM-PMKANV-----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 369 -~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
....+.+++.++++..+.. ...|.. ..+..+-.++...|++.+|++...+..+..|++..++.--.++|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1223445555555555544 334431 233444556667777788888888877777777777777777777777
Q ss_pred ChHHHHHHHHHhhcCCCc
Q 012101 442 LWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~~~ 459 (471)
++|+|+.-|+...+.+..
T Consensus 356 ~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 777777777777665543
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.6e-05 Score=74.55 Aligned_cols=364 Identities=13% Similarity=0.124 Sum_probs=229.8
Q ss_pred hhhccCCCCChHHHHHHHHH--HHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHC-C
Q 012101 40 ASSFLDTHEDPAKIVATQLS--KCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRA-G 116 (471)
Q Consensus 40 ~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g 116 (471)
+..++|++.....+-.++++ .|.. .|+++.|.+-.+.+. +-..|..+.+.|++..+.+-|.-.+-.|... |
T Consensus 715 LrdFvgle~Cd~~TRkaml~FSfyvt---iG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRg 788 (1416)
T KOG3617|consen 715 LRDFVGLENCDESTRKAMLDFSFYVT---IGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARG 788 (1416)
T ss_pred HHHhcCccccCHHHHHhhhceeEEEE---eccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhh
Confidence 45667776554325556653 4666 788899988777775 3478999999999999999998888887542 1
Q ss_pred C--------CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCc-
Q 012101 117 V--------LPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKL- 187 (471)
Q Consensus 117 ~--------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~- 187 (471)
. .|+ .+=..+.-.....|.+++|+.+|++..+. ..|=..|-..|.+++|.++-+.-..-..
T Consensus 789 aRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr 858 (1416)
T KOG3617|consen 789 ARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR 858 (1416)
T ss_pred HHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh
Confidence 1 122 33333334456788999999999998874 3344677788999999998754332222
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKC----------G---------FEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------g---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
.||..-...+-..++.+.|++.|++-... . -..|...|.....-.-..|+.+.|..+|...
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 16666666666777888888877653211 0 1224444555555555667777777777655
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 328 (471)
. -|-+++...|-.|+.++|-++-++- .|......+.+.|-+.|++.+|..+|.+... |
T Consensus 939 --~---------D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------f 996 (1416)
T KOG3617|consen 939 --K---------DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------F 996 (1416)
T ss_pred --h---------hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------H
Confidence 1 2455666667777888777776543 4666777788889999999999999887653 3
Q ss_pred HHHHHHhcc---------------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 012101 329 VGVLSACVH---------------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM------ 387 (471)
Q Consensus 329 ~~ll~~~~~---------------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 387 (471)
...|+.|-. ..+.-.|-.+|++. |.. +...+..|-+.|.+.+|+++--+-
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL 1067 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSAL 1067 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHH
Confidence 333333222 22333344445444 211 223455677888888887752221
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCCCC----C-----ch
Q 012101 388 -------PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE----------------------LEPWS----D-----GA 429 (471)
Q Consensus 388 -------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------~~~~~----~-----~~ 429 (471)
.-..|+...+.-...+....++++|..++-...+ +.|.- + ..
T Consensus 1068 ~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1068 DLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 1223666777777777777777777666544432 11110 0 24
Q ss_pred HHHHHHHHHcCCChHHHHHHH
Q 012101 430 YVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~ 450 (471)
...+++.|.++|.|..|-+-|
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHH
Confidence 667888888999887766544
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=3.2e-05 Score=82.00 Aligned_cols=358 Identities=10% Similarity=-0.041 Sum_probs=218.3
Q ss_pred cCchHHHHHHhcccCCCCchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHS 145 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 145 (471)
.|++.+|.......+..+... ............|+++.+...++.+.......+..........+...|+++++...+.
T Consensus 354 ~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~ 433 (903)
T PRK04841 354 QGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLA 433 (903)
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHH
Confidence 455566655554444321100 1111223345567777777777665322112223333344445567889999999988
Q ss_pred HHHHhCCC------CCc--chHHHHHHHHHhcCChhhHHHHhccCC----CCCc----chHHHHHHHHHcCCChhHHHHH
Q 012101 146 LAVRLGLE------SNE--FCESGFISLYSKAGDFEKARKVFDENP----ERKL----GSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 146 ~~~~~~~~------~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~li~~~~~~~~~~~a~~~ 209 (471)
...+.--. +.. .....+...+...|++++|...+++.. ..+. ...+.+...+...|++++|...
T Consensus 434 ~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~ 513 (903)
T PRK04841 434 RAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAM 513 (903)
T ss_pred HHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87653111 111 111223345567899999998887643 2222 2456666777889999999999
Q ss_pred HHHHHHCCC---CC--CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCC--C-ChhHHHHHHHHHHhcCChHHHH
Q 012101 210 FIGLKKCGF---EP--DDVTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQK--S-DTLMLNSLIDMYGKCGRMDLAY 279 (471)
Q Consensus 210 ~~~m~~~g~---~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~ 279 (471)
+++.....- .+ ...++..+...+...|+++.|...+++...... +.. + ....+..+...+...|++++|.
T Consensus 514 ~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 514 MQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 988764311 11 123445566677889999999999887733221 111 1 2233455666777889999999
Q ss_pred HHHHhcCC------C--CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHhccCCcHHHHH
Q 012101 280 KVFWEIDQ------P--NVSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PNHVTF-----VGVLSACVHGGKVQEGK 345 (471)
Q Consensus 280 ~~~~~~~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~-----~~ll~~~~~~~~~~~a~ 345 (471)
..+.+... + ....+..+...+...|+++.|.+.+.+....... .....+ ...+..+...|+.+.|.
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 673 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAA 673 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHH
Confidence 88887643 1 1234444666778899999999999887542111 111111 11123345578999999
Q ss_pred HHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 012101 346 HFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 346 ~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
+.+...... ..... ...+..+..++...|++++|...+++. +..++ ..+...+..++.+.|+.++|..
T Consensus 674 ~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 674 NWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 998776432 11111 111345667888999999999998887 32222 2466677788999999999999
Q ss_pred HHHHHHhcCCC
Q 012101 415 VAKHLQELEPW 425 (471)
Q Consensus 415 ~~~~~~~~~~~ 425 (471)
.+.+..+....
T Consensus 753 ~L~~Al~la~~ 763 (903)
T PRK04841 753 VLLEALKLANR 763 (903)
T ss_pred HHHHHHHHhCc
Confidence 99999887643
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=5.5e-07 Score=75.62 Aligned_cols=122 Identities=7% Similarity=0.008 Sum_probs=78.2
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGAC-EKFGN--VKMG 412 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 412 (471)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666656555443 1345566667777777777777777777766 4445 444555555553 45555 4777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+++++..+.+|.++..+..++..+.+.|++++|...|+++.+......
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 7777777777777777777777777777777777777777766554433
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=3.8e-07 Score=84.37 Aligned_cols=218 Identities=14% Similarity=0.070 Sum_probs=169.8
Q ss_pred HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhH
Q 012101 232 CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANE 308 (471)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 308 (471)
+.+.|++..|.-.|+.. ++.. +-+...|-.|.-....+++-..|+..+.+..+ .|....-.|.-.|.+.|.-..
T Consensus 295 lm~nG~L~~A~LafEAA--Vkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAA--VKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHH--HhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 35778888888888887 5544 34677888888888888888888888887765 455677777788888888889
Q ss_pred HHHHHHHHHHcCCC--------CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 309 ALDCFHYMRESGIR--------PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 309 a~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
|++.++.-.....+ ++...-.. ..+..........++|-++....+..+|..+...|.-.|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654211 01000000 122333445566777777767667667888888999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 381 RAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 381 ~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
...|+.. .++| |...||.|...++...+.++|+..+.+++++.|.-......|+..|...|.+++|.+.|=...
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999998 7888 567999999999999999999999999999999888889999999999999999999776554
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=1.2e-06 Score=88.83 Aligned_cols=226 Identities=13% Similarity=0.138 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC-CC---CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC-HhhHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK-QK---SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PN-VSSWT 294 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~ 294 (471)
+...|...|......++.++|.++.++. ++.- +. --..+|.++++.-..-|.-+...++|++..+ -| ...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerA--L~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERA--LKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHH--hhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 3445556666666666666666666665 3221 10 0123455555555555656666666666655 22 34556
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
.|...|.+.+.+++|.++++.|.++ ..-....|...+..+.+.++.+.|..++.++.+...-.--.......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 6666666666666666666666654 223445566666666666666666666666654311111123333444445566
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--c-hHHHHHHHHHcCCChHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD--G-AYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~-~~~~l~~~~~~~g~~~~A~~~ 449 (471)
|+.+.+..+|+.. .-.| -...|+.++..-.++|+.+.+..+|+++..++.... . .|.-.++.--+.|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 6666666666665 2222 344666666666666666666666666666553221 1 233333333344554444444
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.5e-06 Score=76.04 Aligned_cols=183 Identities=14% Similarity=-0.022 Sum_probs=122.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-H---hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-V---SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTF 328 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 328 (471)
.....+-.+...+.+.|++++|...|+++.+ |+ . .++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455667777788888999998888887764 32 1 35666778888888899999988888875322111 133
Q ss_pred HHHHHHhccC--------CcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 012101 329 VGVLSACVHG--------GKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCL 399 (471)
Q Consensus 329 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 399 (471)
..+..++... |+.+.|.+.++.+... .|+.. .+..+..... ..... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 3334444433 6778888888888655 34432 2222211100 00000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
...+.+.|++.+|...++++.+..|.++ ..+..++.+|.+.|++++|.+.++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678899999999999999998876543 578899999999999999999999887654
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.4e-06 Score=78.61 Aligned_cols=358 Identities=12% Similarity=0.036 Sum_probs=217.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC-cchHHHHHHHHHhcCCh
Q 012101 94 RLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN-EFCESGFISLYSKAGDF 172 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 172 (471)
.+.+..|+++.|+.+|-+..... ++|...|..-..++++.|++++|.+=-.+-++. .|+ ..-|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567899999999999988765 347788888889999999999988776666654 455 35688888888888999
Q ss_pred hhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHH------HHHHHC---CCCCCHHHHHHHHHHHcCcC----
Q 012101 173 EKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMF------IGLKKC---GFEPDDVTMVSVTSACGSLG---- 236 (471)
Q Consensus 173 ~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~------~~m~~~---g~~p~~~~~~~li~~~~~~~---- 236 (471)
++|..-|.+-.+.+.. .++-+..++... . .+.+.| ..+... .......+|..++...-+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999887655443 566666666211 0 011111 111000 00011122333333221110
Q ss_pred ---CHHHHHHHHHHHHH------h-------hcCCCC------------C----------hhHHHHHHHHHHhcCChHHH
Q 012101 237 ---DLELALQVHKYVFQ------V-------KSKQKS------------D----------TLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 237 ---~~~~a~~~~~~~~~------~-------~~~~~~------------~----------~~~~~~l~~~~~~~g~~~~A 278 (471)
+.+...+....+.. . .....| + ..-...+.++..+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 01111111111000 0 000011 0 01233466666677777777
Q ss_pred HHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhccCCcHHHHHHHHH
Q 012101 279 YKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFV-------GVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 279 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~ 349 (471)
.+-+....+ .++.-++....+|...|.+.++...-....+.|.. ....|+ .+-.+|.+.++++.|...|.
T Consensus 244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777776654 33444566667777777777766666665555421 111222 22235566677888888887
Q ss_pred HhHHhcCCCCChhH-------------------------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 350 MMKNVYQIEPRFAH-------------------------YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 350 ~~~~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
+....+. .|+... ...=...+.+.|++..|...+.++ ...| |...|..-.-+
T Consensus 323 kaLte~R-t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHR-TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 7665432 232111 011134456778888888888887 4445 56678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|.+.|.+..|..-.+...+++|.....|..-+.++....+|++|.+.|.+..+.+..
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 888888888888888888888877777777777777778888888888888777654
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=8.2e-06 Score=83.08 Aligned_cols=202 Identities=13% Similarity=0.111 Sum_probs=167.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
+-....|-..|......++.++|++++++... .-...|.++++.-...|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 33466788889999999999999999988764 23457888888777788888889999998875 222456
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLMGAC 403 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~ 403 (471)
|..|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-+.|..++.+. ..-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888999999999999999999998876 56678999999999999999999999987 2223 455666777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.+.||.+++..+|+......|.-...|+.+++.-.+.|+.+.++.+|+++...++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999999999999988888999999999999999999999999988877543
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.0003 Score=65.22 Aligned_cols=150 Identities=5% Similarity=-0.032 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 306 ANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
.+.....++++...- +.|+ .+|...+..-.+...++.|+.+|.+..+. +..+ .+.++++++..|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 555666666665432 3333 45777777777788888899999998776 4444 7777788887665 4677888888
Q ss_pred HHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 384 VEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 384 ~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
|+-- ..-+|. ..-...+..+...++-..+..+|++....... ...+|..++..-..-|+...+.++=+++...-.
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8865 333444 44456777788888888899999988876321 225788888888888999988888887766543
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.68 E-value=2.2e-08 Score=56.81 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=21.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 151 GLESNEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 151 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
|++||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.68 E-value=4.7e-05 Score=72.83 Aligned_cols=254 Identities=14% Similarity=0.166 Sum_probs=129.5
Q ss_pred CChhhHHHHhccCCCCCcch--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 170 GDFEKARKVFDENPERKLGS--WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 170 g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
..+.+|..+++.+...++.+ |..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-++
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHH
Confidence 34444444444444443332 4444455555555555555553321 233344555555555555555443
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
. .|.......|-+-..-.-+.|++.+|+++|-.+..|+.. |..|-+.|..+..+++..+-.... -..|
T Consensus 817 ~----~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~---l~dt 884 (1636)
T KOG3616|consen 817 C----HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDH---LHDT 884 (1636)
T ss_pred h----cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhh---hhHH
Confidence 3 233333444444444455555566666655555555532 455666666666666655432211 1234
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH-------
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLM------- 400 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~------- 400 (471)
-..+..-+-..|+...|+..|-+.. -|.+-+++|...+.+++|.++-+.-|-. |..-....+
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~-n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGA-NAEKHVAFLWAKSIGG 953 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccc-cHHHHHHHHHHHhhCc
Confidence 4455555666788888877776652 2556667777777777777776654211 111111111
Q ss_pred -----------------HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 401 -----------------GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 401 -----------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
.-.+..+.++-|..+-+-..+. ..+.....+...+...|++++|-+-+-+..+.+
T Consensus 954 daavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 954 DAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1122233333333333322221 123455566667778899999877666555443
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=5.2e-08 Score=55.24 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=20.9
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 356 QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=4e-06 Score=79.90 Aligned_cols=212 Identities=11% Similarity=0.033 Sum_probs=139.7
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCC
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANG 304 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 304 (471)
.+...+.+.|-...|..+++.. ..|.-++.+|+..|+..+|..+..+..+ ||+..|..+....-...
T Consensus 403 ~laell~slGitksAl~I~Erl-----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL-----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH-----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence 3444445555555555555544 1345556666666666666665544332 55555555555554444
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
-+++|.++.+..... .-..+.......++++++.+.|+.-.+...+ ...+|-.+..+..+.++++.|.+.|
T Consensus 472 ~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHH
Confidence 555666555543221 0011111122356677777777665544322 3346666777778889999999988
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 385 EGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 385 ~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
... ...|| ...||.+-.+|.+.++-.+|...+++..+-+..+..+|...+-...+-|.+++|.+.+.++.....
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 887 66775 468999999999999999999999999988877777888888888899999999999988876544
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.60 E-value=6.5e-05 Score=65.53 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=101.8
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
+..+...|+...|+.....+.+-. +.|...|..-..+|...|++..|..-++.. .+.... +....--+-..+...|
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a--skLs~D-nTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQA--SKLSQD-NTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHH--Hhcccc-chHHHHHHHHHHHhhh
Confidence 344555667777777777666542 456666666666677777777776666555 332222 2333334555566666
Q ss_pred ChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHh
Q 012101 274 RMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 274 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
+.+.+....++..+ ||...+-.. -....+..+.+..|.+ ....+++.++.+-.+..
T Consensus 238 d~~~sL~~iRECLKldpdHK~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~v 295 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKLCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKV 295 (504)
T ss_pred hHHHHHHHHHHHHccCcchhhHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHH
Confidence 66666666555544 332211110 0001111111111111 12234444444444444
Q ss_pred HHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 352 KNVYQIEPR-----FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 352 ~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+. .|. ...+..+-+++...|++.+|.+...+. .+.|| ..++.-=..+|.-...++.|+.-|+.+.+.++
T Consensus 296 lk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 296 LKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred Hhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 322 222 112334444555556666666655555 45554 44555555566666666666666666666555
Q ss_pred CCC
Q 012101 425 WSD 427 (471)
Q Consensus 425 ~~~ 427 (471)
.+.
T Consensus 373 sn~ 375 (504)
T KOG0624|consen 373 SNT 375 (504)
T ss_pred ccH
Confidence 443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=1.1e-05 Score=70.56 Aligned_cols=181 Identities=14% Similarity=0.031 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHh----h
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVS----S 292 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 292 (471)
....+......+...|+++.|...++.+ ...... .....+..+..+|.+.|++++|...++++.+ |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~--~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEAL--ESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4566778888889999999999999998 443321 1234677788999999999999999999875 3222 3
Q ss_pred HHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhH
Q 012101 293 WTSMIVGYAAN--------GLANEALDCFHYMRESGIRPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 293 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
+..+..++.+. |++++|.+.++++... .|+.. ....+... .. ..... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---------~~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---------LRNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---------HHHHH-H--------HH
Confidence 55555556554 7789999999998876 44432 22111111 00 00001 0 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PM---KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...+...|.+.|++++|...++.. .. .| ....+..+..++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124566788999999999998887 22 23 346888899999999999999999888876554
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00029 Score=70.06 Aligned_cols=213 Identities=12% Similarity=0.117 Sum_probs=129.4
Q ss_pred CCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch
Q 012101 81 HSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAG--VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC 158 (471)
Q Consensus 81 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (471)
++..|...-..-+.++...+-+.+-+++++++.-.. ..-+...-+.++-...+. +...+.+..+++-..+ .|+
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~--- 1053 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD--- 1053 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh---
Confidence 334455556667788888888888888888876432 111222234444444443 4455555555544322 111
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC-------------------------CCcchHHHHHHHHHcCCChhHHHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPE-------------------------RKLGSWNAIIAGLSQDGRAKEAIDMFIGL 213 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m 213 (471)
+.......+-+++|..+|++..- .....|..+..+-.+.|...+|++-|-+.
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 12223333444444444443210 12346888888989999999988877443
Q ss_pred HHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhH
Q 012101 214 KKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSW 293 (471)
Q Consensus 214 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 293 (471)
-|+..|.-++..+.+.|.+++-.+++... .+..-.|. +-+.|+-+|++.+++.+.+.+.. -||....
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~Ma--Rkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMA--RKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANI 1197 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH--HHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhH
Confidence 35677889999999999999998888777 55554444 35678889999998888776542 3455444
Q ss_pred HHHHHHHHhCCChhHHHHHHH
Q 012101 294 TSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~ 314 (471)
..+..-|...|.++.|.-+|.
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHH
Confidence 555555555555555555444
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=3.1e-05 Score=76.54 Aligned_cols=398 Identities=12% Similarity=-0.003 Sum_probs=217.0
Q ss_pred hhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHH
Q 012101 33 KHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYI 110 (471)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 110 (471)
....++++.+.+.+.++..+.|..|-..|.. ..+...|.+-|+..-+ ..+..++......|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd---~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRD---SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3456778888888999988899999999988 5577888888876543 3567789999999999999999998844
Q ss_pred HHHHCC-CCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcch
Q 012101 111 FMSRAG-VLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGS 189 (471)
Q Consensus 111 ~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 189 (471)
.--+.. ...-...|...--.+.+.++...+..-|+...+.. |.|...|..|..+|.++|.+..|.++|++...-++..
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 433321 11112223333345677888888888888888755 6678899999999999999999999998876555443
Q ss_pred HHH---HHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHcCcCCH-------HHHHHHHHHHHHhhc
Q 012101 190 WNA---IIAGLSQDGRAKEAIDMFIGLKKC------GFEPDDVTMVSVTSACGSLGDL-------ELALQVHKYVFQVKS 253 (471)
Q Consensus 190 ~~~---li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~-------~~a~~~~~~~~~~~~ 253 (471)
+.. ....-+..|.+++|+..+...... +...-..++..+...+.-.|-. +++.+.|... ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~--l~h 707 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS--LIH 707 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--HHH
Confidence 221 222345678899999888776543 1111122333333322222222 2233333322 222
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCCh---h---HHHHHHHHHHHcCCCCC
Q 012101 254 KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLA---N---EALDCFHYMRESGIRPN 324 (471)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~---~---~a~~~~~~m~~~~~~p~ 324 (471)
....+...|-.+.++ -.+|-... |+. ....++..-.-+.+.. | -+.+.+-.-... ..+
T Consensus 708 ~~~~~~~~Wi~asda----------c~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~ 774 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDA----------CYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIH 774 (1238)
T ss_pred hhhhhHHHHHHHhHH----------HHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhc
Confidence 222233333333222 22232222 221 1111111111111111 1 011111110100 111
Q ss_pred HHHHHHHHHHhcc-------C-CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHH
Q 012101 325 HVTFVGVLSACVH-------G-GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVV 394 (471)
Q Consensus 325 ~~~~~~ll~~~~~-------~-~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~ 394 (471)
..+|..+...|.+ . .+...|...++...+. ..-+..+|+.|.-. ...|.+.-|..-|-.- ..+.+..
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchh
Confidence 2222222221111 1 1223555555555432 12344455544433 4445555544444333 2222455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
+|..+...|.+..|++.|...|.+.+.+.|.+...|..........|+.-++..+|..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 6666666667777777777777777777776666666655555566666666665554
No 111
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00027 Score=70.21 Aligned_cols=165 Identities=12% Similarity=0.211 Sum_probs=122.2
Q ss_pred HHHHhcCChHHHHHHHHhcCC-------------------------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 267 DMYGKCGRMDLAYKVFWEIDQ-------------------------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.....++-+++|..+|++... ..+..|..+..+-.+.|...+|.+-|-+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 334455667778877776531 34567888888888899988888766542
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMG 401 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~ 401 (471)
-|...|..++..+.+.|.+++-.+++...+++ .-+|...+ .||-+|++.++..+.++++. .||..-...+..
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 36678999999999999999999999988765 55666554 79999999999998877664 467777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
-|...|.++.|.-++... +.|..|...+...|++..|...-++
T Consensus 1203 rcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888887777533 3366666666666666666544433
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=1.6e-06 Score=68.89 Aligned_cols=91 Identities=8% Similarity=-0.168 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
....+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++.+.+|.++..+..++.++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344444455555555555544 3333 33444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhhcCC
Q 012101 445 EVERIRAVMKHRN 457 (471)
Q Consensus 445 ~A~~~~~~m~~~~ 457 (471)
+|.+.|+...+..
T Consensus 110 eAi~~~~~Al~~~ 122 (144)
T PRK15359 110 LAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555544433
No 113
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00022 Score=66.11 Aligned_cols=209 Identities=12% Similarity=0.051 Sum_probs=142.8
Q ss_pred HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---HhhHH-------
Q 012101 225 MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN---VSSWT------- 294 (471)
Q Consensus 225 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~------- 294 (471)
...+.++..+..+++.+.+-+... .... .+..-++....+|...|.+..+...-....+.. ..-|+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a--~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKA--LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH--HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566666777788888887776 3333 455566777777888888777666555433311 11122
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-------------------------HHHHhccCCcHHHHHHHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVG-------------------------VLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------------------------ll~~~~~~~~~~~a~~~~~ 349 (471)
.+..+|.+.++++.+...|.+.......|+..+-.. -...+.+.|++..|...+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 233456667788888888888766555554433111 1223556799999999999
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 350 MMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 350 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
++.... +-|...|..-.-+|.+.|.+..|++-.+.. ...|+. ..|..=..++....+++.|.+.|.+..+.+|.+.
T Consensus 383 eAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 383 EAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 987652 456778999999999999999999877776 556654 3555556666777799999999999999998776
Q ss_pred chHHHHHHHHHc
Q 012101 428 GAYVVLSNIYAS 439 (471)
Q Consensus 428 ~~~~~l~~~~~~ 439 (471)
.....+.+++..
T Consensus 461 e~~~~~~rc~~a 472 (539)
T KOG0548|consen 461 EAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHH
Confidence 665556555553
No 114
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=0.00036 Score=67.89 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=138.9
Q ss_pred CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC------------CchhhHHHHHHHHHhCCCchHHHHHHHHHH
Q 012101 46 THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY------------SAAFHWNNIIRLYTRLEAPKKALDIYIFMS 113 (471)
Q Consensus 46 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 113 (471)
+-.+-. +|..+.++|.+ ..+++-|.-.+-.|... |+ ..=..+.-.-...|..++|..+|.+.+
T Consensus 753 ~IkS~~-vW~nmA~McVk---T~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 753 FIKSDS-VWDNMASMCVK---TRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred HHhhhH-HHHHHHHHhhh---hccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334556 89999999988 56666665555444321 21 111122223356788999999999887
Q ss_pred HCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC----------
Q 012101 114 RAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP---------- 183 (471)
Q Consensus 114 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------- 183 (471)
. |..+=..|-..|.+++|.++-+.--+.. =..||.....-+-..+|.+.|++.|++-.
T Consensus 828 R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 828 R---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred H---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 5 3344556777889999988876432211 12345555556666788898988887743
Q ss_pred -------------CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH
Q 012101 184 -------------ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQ 250 (471)
Q Consensus 184 -------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 250 (471)
.+|...|.......-..|+.+.|+.+|...++ |-++++..|-.|+.++|.++-++-
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-- 964 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-- 964 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--
Confidence 12444566677777778999999999987753 456777778888888888876543
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 251 VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
| |....--+.+.|-..|++.+|..+|-+..
T Consensus 965 ---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 965 ---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 44556667888888888888888887654
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=4e-05 Score=64.53 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=151.6
Q ss_pred HHHhcCChhhHHHHhccCC-C-CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHH-H
Q 012101 165 LYSKAGDFEKARKVFDENP-E-RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLEL-A 241 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a 241 (471)
-+.-.|++..+...-.... . .++..-.-+-++|...|.+...+.-. +... .|....+..+.......++.+. .
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 3444567766665544322 2 23334444556677777665444322 2221 3444444444444444444333 3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.++.+.+ .......+......-...|++.|++++|++..+.....+....+ ...+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~--a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 93 ASLYELV--ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHH--HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc--
Confidence 3444444 44444444444444456688888888888888874433333332 34456777888888888888763
Q ss_pred CCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHH
Q 012101 322 RPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVI 395 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~ 395 (471)
-+..|.+.|..++.+ .+.+..|.-+|++|.+ ...|+..+.+-...++...|++++|..+++.. ....+..+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 356677767766653 3567888888888865 35678778888888888888888888888887 33345667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 012101 396 WGCLMGACEKFGNV-KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 396 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 427 (471)
+..++-+-...|.. +...+.+.+++...|..+
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666655556654 445667777777666543
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=5.1e-06 Score=79.25 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=130.0
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
+...+...+.+ .|-..+|..+|+++. .|.-+|-+|...|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~s---lGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLS---LGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHH---cchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 44555556666 666777777776654 3666777777777777777776666653 566666666666666
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCC---CcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPER---KLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
..--+++|.++.+..-.. .-..+.......++++++.+.|+.-.+- -..+|-.+..+..+.++++.|.+.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555566666666554321 1111112222356777777777653322 233666666667777777777777
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 210 FIGLKKCGFEPD-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 210 ~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
|...... .|| ...|+.+-.+|.+.++..+|...+.+. .+.+ ..+..+|...+-...+.|.+++|.+.++++.
T Consensus 542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA--lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA--LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHH--hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 7766654 343 456777777777777777777777777 6665 3445566666666666777777776666654
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.0001 Score=67.53 Aligned_cols=180 Identities=13% Similarity=0.065 Sum_probs=115.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV-TFVGVLSA 334 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~ 334 (471)
|+...+...+.+......-..+..++.+..+ .....+.-....+...|++++|+..++.+... .|+.. -.......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i 349 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDI 349 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4444455555443333333333333322222 22222223333456678888888888888776 45544 44455577
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~ 411 (471)
+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+|..++++. ..+-|...|..|.++|...|+..+
T Consensus 350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~ 426 (484)
T COG4783 350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE 426 (484)
T ss_pred HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence 88888889999888888754 565 445566778888889988888888888 444477788888888888888777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.... .+.|...|++++|...+....+..-
T Consensus 427 a~~A~-----------------AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 427 ALLAR-----------------AEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHH-----------------HHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 76544 3455666677777776666665543
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=3.4e-05 Score=64.89 Aligned_cols=154 Identities=10% Similarity=0.076 Sum_probs=114.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (471)
+-.|...|+++.+....+.+..+.. .+...++.+++...+++..+.. +.|...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788888877655544333210 1123566677877787777653 556778888889999999999999
Q ss_pred HHHHHhHHhcCCCCChhHHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 346 HFFEMMKNVYQIEPRFAHYGCMVDLL-GRAGL--LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 346 ~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
..|++..+.. +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|...++++.
T Consensus 94 ~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987542 23566777777764 67777 59999999998 6666 56788888899999999999999999999
Q ss_pred hcCCCCCchH
Q 012101 421 ELEPWSDGAY 430 (471)
Q Consensus 421 ~~~~~~~~~~ 430 (471)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9987665443
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=1.7e-05 Score=73.85 Aligned_cols=247 Identities=13% Similarity=0.067 Sum_probs=177.5
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 196 GLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 196 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.++ ++.. +.|..+.-+|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rc--l~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRC--LELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHH--HhcC-CccHHHHHHHHHHHhhhhhH
Confidence 4567888999999999888774 456778888888888888888899988888 4433 33677788888889999999
Q ss_pred HHHHHHHHhcCCCCH-hhHHHHH---------HHHHhCCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 276 DLAYKVFWEIDQPNV-SSWTSMI---------VGYAANGLANEALDCFHYMR-ESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 276 ~~A~~~~~~~~~~~~-~~~~~li---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
..|.+.+++...... ..|...- ..+.......+..++|-++. ..+..+|......|--.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998887642110 0000000 11122223344555555554 445335555666666667888999999
Q ss_pred HHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.+.|+.+... +|+ ..+||.|.-.++...+.++|...|.+. .++|+.+ +...|.-+|...|.+++|...|-.+..
T Consensus 450 iDcf~~AL~v---~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQV---KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhc---CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999854 565 568999999999999999999999999 8899864 777788899999999999999988876
Q ss_pred cCCCC----------CchHHHHHHHHHcCCChHHHHHH
Q 012101 422 LEPWS----------DGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 422 ~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
+.+.+ ..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 54331 13566666666666766644443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=5.5e-05 Score=63.68 Aligned_cols=149 Identities=15% Similarity=0.034 Sum_probs=67.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
+-..+...|+-+....+...... .|....+..+....+.|++..|...+++.... -++|...++.+--+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33344444444444444443221 22233333445555555555555555554443 234444555555555555555
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+.|..-|.+..+..+-. ...++.+.-.|.-.|+.+.|..++... .-.-|...-..+.-+....|+++.|+.+.
T Consensus 151 ~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 151 DEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred hHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555554332111 223344444444555555555555544 11114444444444445555555555443
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00015 Score=61.10 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=134.3
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 163 ISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI-DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
-++|...|.+.....-...-..+.......+......-++.++-+ ++.+.+.......+......-...|+..++++.|
T Consensus 48 ~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deA 127 (299)
T KOG3081|consen 48 YRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEA 127 (299)
T ss_pred HHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHH
Confidence 345555565554443333333233333333444444445544444 3444444443344434444455567888999999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC-CHhhHHHHHHHHHh----CCChhHHHHHHHHH
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP-NVSSWTSMIVGYAA----NGLANEALDCFHYM 316 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m 316 (471)
++..+.. . +......=+..+.+..+++-|++.+++|.+. +..+.+.|..++.+ .+.+.+|.-+|++|
T Consensus 128 l~~~~~~------~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~ 199 (299)
T KOG3081|consen 128 LKALHLG------E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL 199 (299)
T ss_pred HHHHhcc------c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 8876532 1 2333444455677888899999999999884 44566666666654 45788999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 012101 317 RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL-EEARAMVEGM 387 (471)
Q Consensus 317 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 387 (471)
.++ ..|+..+.+....++...|++++|..+++....+. .-++.+...+|..-...|.. +...+.+...
T Consensus 200 s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 200 SEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 875 68899999999999999999999999999988753 33445555555555555544 3344555555
No 122
>PLN02789 farnesyltranstransferase
Probab=98.40 E-value=0.00017 Score=65.21 Aligned_cols=147 Identities=9% Similarity=-0.052 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CC----HHH
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GL----LEE 379 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~ 379 (471)
++++.+++++.+.. +-|...|.....++...|+++++++.++++.+.. .-+...|+.....+.+. |. .++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHH
Confidence 34444554554432 1234444444444444555555555555554431 12223333332222222 11 234
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC------------
Q 012101 380 ARAMVEGM-PMKA-NVVIWGCLMGACEKF----GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG------------ 441 (471)
Q Consensus 380 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 441 (471)
..+....+ ...| |...|+.+...+... ++..+|...+.+..+.++.++.....|++.|....
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 44444333 4445 455677666666652 34456777777777777767667777888887532
Q ss_pred ------ChHHHHHHHHHhhcC
Q 012101 442 ------LWEEVERIRAVMKHR 456 (471)
Q Consensus 442 ------~~~~A~~~~~~m~~~ 456 (471)
..++|.++++.+.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~ 302 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVA 302 (320)
T ss_pred cccccccHHHHHHHHHHHHhh
Confidence 346788888888433
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=6e-07 Score=51.79 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988874
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.37 E-value=1.2e-05 Score=63.94 Aligned_cols=122 Identities=7% Similarity=-0.110 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
.++++..+. .|+. +......+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445554443 4543 4455667788899999999999886531 335667888888899999999999999998 55
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 390 KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 390 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
.| +...+..+..++...|++++|...|++..+..|.++..+.....+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 66788888899999999999999999999999988877766655543
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.36 E-value=0.0036 Score=61.93 Aligned_cols=414 Identities=13% Similarity=0.095 Sum_probs=207.7
Q ss_pred HHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCc
Q 012101 25 LCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAP 102 (471)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 102 (471)
...++.++++..... +.+.-.|+. .+...+.++...+ .|+.++|..+++.... ..|..+...+-..|.+.|..
T Consensus 19 ~ld~~qfkkal~~~~--kllkk~Pn~--~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLG--KLLKKHPNA--LYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHH--HHHHHCCCc--HHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 334455555444333 333334443 3455555554432 5777888877776543 23556777777888888888
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC----------h
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD----------F 172 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~ 172 (471)
++|..+|++..+. .|+......+..+|.+.+++.+-.+.--++-+ .++.+...+=++++.+...-. .
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence 8888888888765 45666667777778887777665555555544 345555665566666654421 1
Q ss_pred hhHHHHhccCCCCC-c-ch---HHHHHHHHHcCCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHH
Q 012101 173 EKARKVFDENPERK-L-GS---WNAIIAGLSQDGRAKEAIDMFI-GLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHK 246 (471)
Q Consensus 173 ~~a~~~~~~~~~~~-~-~~---~~~li~~~~~~~~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 246 (471)
.-|.+.++.+.+.+ . .+ ...-...+...|++++|++++. ..-+.-...+...-+.-+..+...++|.+..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23444444444333 1 11 1111223345677888888873 33333233344444456666677778888777777
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHH----------------hcCChHHHHHHHHhcCCC-CHhhHHHHHHHHH---hCCCh
Q 012101 247 YVFQVKSKQKSDTLMLNSLIDMYG----------------KCGRMDLAYKVFWEIDQP-NVSSWTSMIVGYA---ANGLA 306 (471)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~ 306 (471)
++ ...+..- |...++.+. ..+..+...+...+.... .-..|-+-+.... .-|+.
T Consensus 251 ~L--l~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ 324 (932)
T KOG2053|consen 251 RL--LEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDS 324 (932)
T ss_pred HH--HHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCCh
Confidence 77 5555321 333222221 112222222222222211 1122333333332 34666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh-------HHHHHHHHHHhcCC---
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA-------HYGCMVDLLGRAGL--- 376 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~--- 376 (471)
+++...|-+ +-|..| .|..=+..|...=..++...++...... .++.. -+...+..-.-.|.
T Consensus 325 ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~ 396 (932)
T KOG2053|consen 325 EEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEK 396 (932)
T ss_pred HHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 665554433 223232 2222222232222333333333333211 11111 01111111122221
Q ss_pred --HHHHHHHHHhC------C------CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCCCCchH
Q 012101 377 --LEEARAMVEGM------P------MKANV---------VIWGCLMGACEKFGNVK---MGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 377 --~~~A~~~~~~m------~------~~p~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~ 430 (471)
-+....++.+. | .-|+. -+-+.|+..|.+.++.. +|+-+++......|.+..+-
T Consensus 397 l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~K 476 (932)
T KOG2053|consen 397 LPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTK 476 (932)
T ss_pred CChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHH
Confidence 11122222111 1 11222 23456677777777654 45556666666666666666
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 431 VVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
..++.+|.-.|-+..|.++++.+--++++.
T Consensus 477 LlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 477 LLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 677778877788888888887776655543
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=0.00051 Score=69.62 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSR 114 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 114 (471)
.+...|..|+..+...+++++|.++.+...+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666666666666666666665444
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.33 E-value=9e-07 Score=50.63 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLP 119 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 119 (471)
.+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888876
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=2.4e-05 Score=72.16 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=92.0
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEK 405 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~ 405 (471)
...++..+...++++.|.++|+++.+. .|+. ...+++.+...++-.+|.+++++. ...| +...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 344555556667777788888777654 3543 335667777777777777777776 3333 56666666777888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.++++.|..+.+++.+..|.+-.+|..|+.+|.+.|++++|+-.++.+...
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888899999999998888888888888999999999999999888888643
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=0.00015 Score=72.54 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=63.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCM 367 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 367 (471)
+..+-.|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|....+..... .|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHHH
Confidence 444445555555555555555555555543 333 223334444555555555555555555432 232 2233344
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 368 VDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
..++.+.|++++|..+|++. .-.|+ ..++..+..++...|+.++|...|++..+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 44555555555555555555 22222 4455555555555555555555555555443
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=5e-05 Score=63.91 Aligned_cols=173 Identities=13% Similarity=0.070 Sum_probs=133.8
Q ss_pred HHHHHHHhcCC-C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 277 LAYKVFWEIDQ-P-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 277 ~A~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.+..+...... | |... ..+-..+...|+-+....+....... -.-|............+.|++..|...+++...
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~- 128 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR- 128 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 33444443332 3 3344 55667777888888888887775543 133444555577788889999999999999965
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 012101 355 YQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVV 432 (471)
Q Consensus 355 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 432 (471)
.-++|...|+.+.-+|.+.|+.+.|..-|.+. .+.| +....+.+...+.-.||.+.|..++.......+.+..+-..
T Consensus 129 -l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N 207 (257)
T COG5010 129 -LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN 207 (257)
T ss_pred -cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence 44678889999999999999999999998888 5565 45678888888999999999999999999888878888888
Q ss_pred HHHHHHcCCChHHHHHHHHHh
Q 012101 433 LSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m 453 (471)
+..+....|++++|.++...-
T Consensus 208 LAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 208 LALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHhhcCChHHHHhhcccc
Confidence 999999999999998876543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00017 Score=66.09 Aligned_cols=178 Identities=15% Similarity=0.018 Sum_probs=130.4
Q ss_pred ChHHHHHHHHhcCC------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHF 347 (471)
Q Consensus 274 ~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 347 (471)
++.+++..-+.+.. |+...+...+.+......-..+..++.+-.+ ..-...-|..-+. +...|+++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~-~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQ-TYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHH-HHHhcccchHHHH
Confidence 44555555566653 5555666666655443333333333322222 1122334555554 3467899999999
Q ss_pred HHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 348 FEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 348 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
++.+... .+-|+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+..++.+.|++.+|+.+++......|.
T Consensus 329 l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 9998764 3445666677888999999999999999999 77787 556777889999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
++..|..|..+|...|+..+|.....++...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 9999999999999999999999887776543
No 132
>PLN02789 farnesyltranstransferase
Probab=98.26 E-value=0.00015 Score=65.70 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=133.8
Q ss_pred HHHhcCChHHHHHHHHhcCCC---CHhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc--H
Q 012101 268 MYGKCGRMDLAYKVFWEIDQP---NVSSWTSMIVGYAANG-LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK--V 341 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~ 341 (471)
.+...++.++|..+..++.+. +..+|+..-.++...| ++++++..++++.+...+ +..+|+.--..+.+.|. .
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 344556777888887777652 3345655555566666 578999999998876432 34455544434444454 3
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCH----HHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF---GNV----KMG 412 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~----~~a 412 (471)
+.+..+++.+.+.. +-+...|+....++...|+++++++.++++ ...| |...|+.....+.+. |.. +..
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888887542 346678888888888999999999999999 4444 667787777666554 222 467
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcC----CChHHHHHHHHHhhcCCCc
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASR----GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~ 459 (471)
..+..++.+..|.+.+.|..+..++... ++..+|.+.+.+....++.
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 8888899999999999999999998873 4556788888887665544
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00019 Score=72.60 Aligned_cols=230 Identities=9% Similarity=0.059 Sum_probs=121.8
Q ss_pred chHHHHHHHHHhcCChhhHHHHhccCCC--CC-cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHc
Q 012101 157 FCESGFISLYSKAGDFEKARKVFDENPE--RK-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACG 233 (471)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 233 (471)
..+..|+..|...+++++|.++.+...+ |+ +..|-.+...+.+.++.+++..+ .++....
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~~~ 94 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDSFS 94 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhhcc
Confidence 3455555555555555555555553322 11 11233333344444443333222 2222333
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHH
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
...++..+..++..+ .. ..-+...+-.+..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|... +.++|.
T Consensus 95 ~~~~~~~ve~~~~~i--~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNLKWAIVEHICDKI--LL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccchhHHHHHHHHH--Hh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 333444444444444 22 122334555666666666666666666666654 3455566666666666 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGMPM 389 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (471)
+++.+.... +...+++..+.++|.++.+. .|+. ..+-.+.+. +....+.
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---CcccchHHHHHHHH------------HHhhhcc
Confidence 666655443 44445666666666666532 2221 111111111 1111122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 390 KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 390 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
.--..++-.+-..|...++++++..+++.+.+..+.|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334556666677888889999999999999999888777777777775
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=1.7e-05 Score=62.57 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 444 (471)
+...+...|++++|.+.++.. ...| +...+..+..++...|++++|...+++..+.+|.++..+..++.+|...|+++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444 2222 33344444444444555555555555554444444444444455555555555
Q ss_pred HHHHHHHHhhcC
Q 012101 445 EVERIRAVMKHR 456 (471)
Q Consensus 445 ~A~~~~~~m~~~ 456 (471)
+|.+.|+...+.
T Consensus 103 ~A~~~~~~al~~ 114 (135)
T TIGR02552 103 SALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=2.3e-06 Score=49.24 Aligned_cols=34 Identities=35% Similarity=0.635 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPN 324 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 324 (471)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688899999999999999999999998888887
No 136
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=2e-05 Score=61.67 Aligned_cols=94 Identities=9% Similarity=-0.069 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
.-.+...+...|++++|.++|+-. .+.| +...|..|..+|-..|++++|+..+.....+.|+++..+..++.+|...|
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 334555677899999999999998 6666 55678888889999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
+.+.|++.|+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.19 E-value=6.8e-05 Score=69.23 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
....+|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777778889999999999988666666778888888888899999999988652 335556666667788999
Q ss_pred cHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGMPMKA 391 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 391 (471)
+++.|..+.+++.+. .|+. .+|..|..+|.+.|+++.|+..++.++..|
T Consensus 249 ~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999754 5654 589999999999999999999999985443
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4e-06 Score=47.85 Aligned_cols=33 Identities=27% Similarity=0.593 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRP 323 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 323 (471)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888888776
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.13 E-value=0.001 Score=66.30 Aligned_cols=346 Identities=13% Similarity=0.059 Sum_probs=180.1
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 102 PKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 102 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
...|+..|-+..+..+. =...|..|-..|+...|...|.+.|++..+.+ .-+........+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 55555555554443211 13456667677766667777777777776654 44556667777778888888887777433
Q ss_pred CCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC
Q 012101 182 NPERKLG-----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK 256 (471)
Q Consensus 182 ~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 256 (471)
..+.+.. .|-...-.|...++...|+.-|+...+.. +.|...|..+..+|...|++..|.++|..+ . .+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kA--s--~Lr 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKA--S--LLR 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhh--H--hcC
Confidence 2222221 23333334556666777776666665543 445566677777777777777777777655 2 222
Q ss_pred CChhHHHHH--HHHHHhcCChHHHHHHHHhcCC---------CC-HhhHHHHHHHHHhCCChhHHHHHHHH-------HH
Q 012101 257 SDTLMLNSL--IDMYGKCGRMDLAYKVFWEIDQ---------PN-VSSWTSMIVGYAANGLANEALDCFHY-------MR 317 (471)
Q Consensus 257 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~~~~~~a~~~~~~-------m~ 317 (471)
|+. .|... .-.-+..|.+.+|...+..+.. .+ ..++-.+...+.-.|-..++.+++++ ..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 322 12211 1223455666666666655442 00 11111111112222222222222221 11
Q ss_pred HcCCC--------------------CC---HHHHHHHHHHhccCCcH---H---HHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 318 ESGIR--------------------PN---HVTFVGVLSACVHGGKV---Q---EGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 318 ~~~~~--------------------p~---~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
.+... |+ ......+..-.-..+.. + -+.+.+-.-. .+..+..+|..++
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLG 782 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLG 782 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHh
Confidence 11111 22 11111111101111111 1 1111111111 1112233444444
Q ss_pred HHHHh----cC----CHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 369 DLLGR----AG----LLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 369 ~~~~~----~g----~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
..|.+ .| +...|...+... ... .+..+|+.|.-. ...|++.-+.-.|-+....+|.....|..+.-.+.
T Consensus 783 inylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 783 INYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 33332 22 223455555555 333 356677777655 66688888888888888888888889999999999
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+..+++.|...|.+.+.-.+.
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCch
Confidence 999999999999988876553
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.10 E-value=0.00014 Score=57.93 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV----VIWGCLM 400 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~ 400 (471)
.|..++..+ ..++...+...++.+...++-.+ .....-.+...+...|++++|...|+.. ...||. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 35677777777777765532111 0122223445666777777777777777 222332 2344456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
..+...|++++|...++.... .+..+..+...+++|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677778888888888765322 2233446667778888888888888877653
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.10 E-value=0.009 Score=55.88 Aligned_cols=389 Identities=12% Similarity=0.087 Sum_probs=228.4
Q ss_pred CChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH
Q 012101 48 EDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP 125 (471)
Q Consensus 48 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (471)
.|.. .|+.||+-+.. . ..++++..++++.. +.....|..-|..-.+..+++....+|.+...+- .+...|.
T Consensus 18 ~di~-sw~~lire~qt---~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 18 YDID-SWSQLIREAQT---Q-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred ccHH-HHHHHHHHHcc---C-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 4566 99999988776 4 78888888887743 3456789999999999999999999999988763 4566777
Q ss_pred HHHHHHhc-cCCchH----HHHHHHHHH-HhCCCCCc-chHHHHHHH---------HHhcCChhhHHHHhccCCCC---C
Q 012101 126 IVLKASCQ-LFALEI----GRQLHSLAV-RLGLESNE-FCESGFISL---------YSKAGDFEKARKVFDENPER---K 186 (471)
Q Consensus 126 ~ll~~~~~-~~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~~---~ 186 (471)
+-|.-..+ .++... ..+.|+-.. +.|+.+-. ..|+..+.. |....+++...+++.++... +
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 77765433 233333 233344332 34544332 345554433 23344566777777775432 1
Q ss_pred cc-hHH------HHHH-----HH--HcCCChhHHHHHHHHHHH--CCCCCCHH---------------HHHHHHHHH---
Q 012101 187 LG-SWN------AIIA-----GL--SQDGRAKEAIDMFIGLKK--CGFEPDDV---------------TMVSVTSAC--- 232 (471)
Q Consensus 187 ~~-~~~------~li~-----~~--~~~~~~~~a~~~~~~m~~--~g~~p~~~---------------~~~~li~~~--- 232 (471)
+. .|+ .=|+ -+ -+...+..|.++++++.. +|..-... .|..+|..=
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 11 111 1111 00 112234445555544432 12110000 011111110
Q ss_pred ----------------------------------------------cCcCC-------HHHHHHHHHHHHHhhcCCCCCh
Q 012101 233 ----------------------------------------------GSLGD-------LELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 233 ----------------------------------------------~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
...|+ -+++..+++.. +..-...+.
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~--I~~l~~~~~ 328 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA--IEGLLKENK 328 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH--HHHHHHHHH
Confidence 00111 11222222222 111111112
Q ss_pred hHHHHHHHHHH---hcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 012101 260 LMLNSLIDMYG---KCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGV 331 (471)
Q Consensus 260 ~~~~~l~~~~~---~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l 331 (471)
.+|..+.+.-- .....+.....++++.. .-..+|..+++.-.+......|..+|.+..+.+..+ +....+++
T Consensus 329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 22222211100 00113333344444332 234577888888888899999999999999998877 77888888
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhc
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM---PMKAN--VVIWGCLMGACEKF 406 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~l~~~~~~~ 406 (471)
+.-+| .++.+.|.++|+-=.+.+|-.| .--...++.+...++-..|..+|++. .+.|| ...|..++..-+.-
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~v 485 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNV 485 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhc
Confidence 88776 4789999999998777654333 34457788888999999999999998 34554 46999999999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CC--CchHHHHHHHHHcCCChHHHHH
Q 012101 407 GNVKMGEWVAKHLQELEP--WS--DGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
||...+.++-++....-| .. ...-..+++-|.-.+.+..-..
T Consensus 486 GdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 486 GDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred ccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 999999999988876554 11 1234455666655555444333
No 142
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=0.0077 Score=57.98 Aligned_cols=260 Identities=13% Similarity=0.057 Sum_probs=132.0
Q ss_pred HHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHH--------
Q 012101 22 LHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNII-------- 93 (471)
Q Consensus 22 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li-------- 93 (471)
++.+....++-.+.-+.+..+++.-.|++. +|..|.+.-.+ .-.++.|...|-+...-+.+..-..+-
T Consensus 664 ikslrD~~~Lve~vgledA~qfiEdnPHpr-LWrllAe~Al~---Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q 739 (1189)
T KOG2041|consen 664 IKSLRDVMNLVEAVGLEDAIQFIEDNPHPR-LWRLLAEYALF---KLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQ 739 (1189)
T ss_pred ehhhhhHHHHHHHhchHHHHHHHhcCCchH-HHHHHHHHHHH---HHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHH
Confidence 455555555666666677777777788888 88887766555 344566666665554433321111111
Q ss_pred --HHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHH
Q 012101 94 --RLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESN----EFCESGFISLYS 167 (471)
Q Consensus 94 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~ 167 (471)
..-+--|++++|.++|-+|-.++ ..|....+.||+-.+.++++.- |-..| ...|+.+...++
T Consensus 740 ~aei~~~~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa 807 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFA 807 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHH
Confidence 11122367777777776665433 2345555666666555554431 11111 234556666666
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
....+++|.+.|..-... ...+.++.+..++++-..+...+ +.|....-.+...+.+.|--++|.+.|-.
T Consensus 808 ~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 666666666665443211 12333333333333333332222 33334444555556666666666555422
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHH--------------HHHHHHhCCChhHHHHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTS--------------MIVGYAANGLANEALDCF 313 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~~~~~~a~~~~ 313 (471)
.+.+ .+.+..|...++|.+|.++-++..-|.+.+.-+ -|..+.+.|++-+|-+++
T Consensus 878 -----~s~p------kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll 946 (1189)
T KOG2041|consen 878 -----RSLP------KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLL 946 (1189)
T ss_pred -----ccCc------HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHH
Confidence 2221 123445555566666666665554443332211 233445566666666666
Q ss_pred HHHHH
Q 012101 314 HYMRE 318 (471)
Q Consensus 314 ~~m~~ 318 (471)
.+|.+
T Consensus 947 ~qmae 951 (1189)
T KOG2041|consen 947 SQMAE 951 (1189)
T ss_pred HHHhH
Confidence 66643
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.05 E-value=6.4e-06 Score=58.68 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH
Q 012101 374 AGLLEEARAMVEGM-PMKA---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
.|+++.|..+++++ ...| +...+..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666666 2222 344455567777777777777777777 444454444555667777777777777777
Q ss_pred HHH
Q 012101 450 RAV 452 (471)
Q Consensus 450 ~~~ 452 (471)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=5.8e-05 Score=57.86 Aligned_cols=97 Identities=9% Similarity=0.007 Sum_probs=41.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGAC 403 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~ 403 (471)
.+...+.+.|++++|.+.|..+...++-.+ ....+..+..++.+.|+++.|.+.++.+ ...|+ ..++..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444445555555555555543311100 0122333444444455555555544444 21222 22344444444
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCC
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+.|+.++|...++++.+..|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCC
Confidence 44455555555555444444433
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.02 E-value=7.3e-05 Score=54.35 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+..+...+...|++++|...+++. ...|+ ...+..+...+...+++++|.+.+++..+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888876 44443 3567777778888888888888888888888777777888888888888
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 8888888888776543
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=0.00026 Score=55.71 Aligned_cols=113 Identities=7% Similarity=-0.062 Sum_probs=83.2
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 312 CFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 312 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
.+++.... .|+ ......+...+...|++++|.+.++.+.... +.+...+..+...+...|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 343 3445556667778888999999888886542 345667778888888889999999888887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 390 KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 390 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.| +...+..+..++...|++++|...+++..+..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 55 4567777888888999999999999999998886654
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=7.5e-06 Score=45.53 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGV 117 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 117 (471)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887764
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0018 Score=54.40 Aligned_cols=164 Identities=16% Similarity=0.150 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHH-HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSM-IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
|..++-+....|+.+.|...++++.. |+..-...| ..-+-..|++++|+++++.+.+.. +.|.+++..=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 44445555666777777777776554 222111111 112334678888888888888765 44566666555555556
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG---NVKMGE 413 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~---~~~~a~ 413 (471)
|+--.|++-+.+..+. +..|...|.-+...|...|++++|.--++++ -+.| +...+..+...+.-.| +.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666777777777664 4677788888888888888888888888888 4555 4445555655554444 567778
Q ss_pred HHHHHHHhcCCCCCc
Q 012101 414 WVAKHLQELEPWSDG 428 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (471)
+++.+..++.+.+..
T Consensus 212 kyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 212 KYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHhChHhHH
Confidence 888888888875543
No 149
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.99 E-value=0.0005 Score=68.82 Aligned_cols=131 Identities=9% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CHhhHHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-NVSSWTS 295 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 295 (471)
..+...+..|..+..+.|..++|+.+++.+ .... +-+......+...+.+.+++++|...+++..+ | +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~--~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGI--HQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHH--HhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 344555555566666666666666666655 2221 11234445555556666666666666665554 2 2334444
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555556666666666666665521 12245555555556666666666666666544
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00097 Score=56.00 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=123.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGV-LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
.|..++-+....|+.+.|...++++...- |...-...+ .--+-..|.+++|.++++.+.++. +.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 34555666778899999999999998762 433211111 112344689999999999998762 4455566655556
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC---ChHH
Q 012101 371 LGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG---LWEE 445 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 445 (471)
.-..|+.-+|.+-+.+. .+..|...|.-+...|...|++++|.-.++++.=..|.++..+..+.+.+.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66678877888877777 566699999999999999999999999999999999999988888888865444 5667
Q ss_pred HHHHHHHhhcCCC
Q 012101 446 VERIRAVMKHRNL 458 (471)
Q Consensus 446 A~~~~~~m~~~~~ 458 (471)
|.+.+++..+.+.
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8888888877655
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00026 Score=54.21 Aligned_cols=97 Identities=15% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVLS 434 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 434 (471)
++-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++.+.|+++.|...++.+.+..|.+ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445666667777777777777776 32332 2355556677777777777777777777766543 23566667
Q ss_pred HHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 435 NIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.++.+.|++++|.+.++++.+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 7777777777777777777666543
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.91 E-value=0.00099 Score=53.08 Aligned_cols=125 Identities=12% Similarity=0.066 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPN--HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--AHYGCMV 368 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li 368 (471)
|..++..+ ..++...+...++.+......-. ....-.+...+...|++++|...|+.+... ...|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 36666777666777666531111 122223345566677777777777777654 211211 1233455
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
..+...|++++|+..++.. +.......+.....++.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777777665 22223445556667777777777777777653
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.90 E-value=5.3e-05 Score=70.14 Aligned_cols=103 Identities=10% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|+++.|.+.|+++.+.. +-+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 345567799999999999998652 234567778888999999999999999998 6666 566888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
++|...|+++.++.|.++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999887665555444
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.1e-05 Score=43.68 Aligned_cols=30 Identities=47% Similarity=0.782 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=4.9e-05 Score=51.72 Aligned_cols=65 Identities=22% Similarity=0.124 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC-ChHHHHHHHHHhhcC
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG-LWEEVERIRAVMKHR 456 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 456 (471)
+..+|..+...+...|++++|+..|++..+.+|.++..|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999998889999999999999 799999999887654
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=3.8e-05 Score=51.52 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+...+.+.|++++|...|+++.+..|.++..+..++.++...|++++|...|+++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445677888888888888888888887777888888888888888888888888766543
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.0016 Score=58.22 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESG-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
.+|-.++...-+.+..+.|..+|.+..+.+ ...+.....+.+. +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 467788888888888999999999998543 2333333344443 333577888999999998875 456677889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.+...|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+.-+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998 333333 489999999999999999999999998876653
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.79 E-value=0.028 Score=51.50 Aligned_cols=134 Identities=7% Similarity=-0.036 Sum_probs=85.8
Q ss_pred cCCCC-ChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC--CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 012101 44 LDTHE-DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY--SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD 120 (471)
Q Consensus 44 ~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 120 (471)
+.-.| ++. .|-.|+.-|.. .+..++.++.++++..+ --..+|..-|++=...+++.....+|.+.....+ +
T Consensus 35 IkdNPtnI~-S~fqLiq~~~t---q~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ 108 (660)
T COG5107 35 IKDNPTNIL-SYFQLIQYLET---QESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--N 108 (660)
T ss_pred hhcCchhHH-HHHHHHHHHhh---hhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--c
Confidence 33344 455 89999999988 78889999999988653 2345788888888888999999999999987644 5
Q ss_pred cchHHHHHHHHhccCCc------hHHHHHHHHHHH-hCCCCCc-chHHHHHHHHH---hcC------ChhhHHHHhccCC
Q 012101 121 CYTLPIVLKASCQLFAL------EIGRQLHSLAVR-LGLESNE-FCESGFISLYS---KAG------DFEKARKVFDENP 183 (471)
Q Consensus 121 ~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~ll~~~~---~~g------~~~~a~~~~~~~~ 183 (471)
...|..-+....+.+.. ....+.|+-... .++.|-. ..|+..+..+- ..| ++|.....+.++.
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 66777777665555422 122334444333 3454433 44555444322 223 3455566666554
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00049 Score=59.67 Aligned_cols=112 Identities=15% Similarity=0.027 Sum_probs=84.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCchHHH
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG---NVKMGEWVAKHLQELEPWSDGAYVV 432 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 432 (471)
+-|...|-.|...|...|+.+.|...|.+. .+.| +...+..+..++.... ...++..+|+++.+.+|.+......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446678888888888888888888888887 4443 4445555555544322 4567888888888888888888888
Q ss_pred HHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 433 LSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
|...+...|++.+|...|+.|.+......|..+.+++
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 8888888888888888888888888777777666654
No 160
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.72 E-value=0.00032 Score=51.06 Aligned_cols=80 Identities=18% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCcchHHHHHHHHhccCC--------chHHHHHHHHHHHhCCCCCcchH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGV-LPDCYTLPIVLKASCQLFA--------LEIGRQLHSLAVRLGLESNEFCE 159 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 159 (471)
....|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..- .-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34466777777999999999999999999 9999999999998876532 24567889999999999999999
Q ss_pred HHHHHHHHh
Q 012101 160 SGFISLYSK 168 (471)
Q Consensus 160 ~~ll~~~~~ 168 (471)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
No 161
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00035 Score=64.93 Aligned_cols=114 Identities=8% Similarity=0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCc-----hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSA-----AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIV 127 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 127 (471)
-...+++.+.. ..+++.+..++.+....|+ ..+..++|+.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 68 dld~fvn~~~~---~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 68 DLDIFVNNVES---KDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred HHHHHHhhcCC---HhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44455666655 5556666666555443221 124468888888888888888888888888888888888888
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhc
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKA 169 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 169 (471)
|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888887776666666666555555555
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.00051 Score=56.58 Aligned_cols=81 Identities=10% Similarity=-0.023 Sum_probs=36.9
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
+..+...+...|++++|...|++..+...-.++ ...+..+...+.+.|++++|...+++. ...| +...+..+..++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444455556666666666555432111111 234444555555555555555555554 3333 2233444444444
Q ss_pred hcCC
Q 012101 405 KFGN 408 (471)
Q Consensus 405 ~~~~ 408 (471)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 4443
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.04 Score=49.95 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK 405 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 405 (471)
.+.+..+.-|...|+...|.++-++. ++ |+...|-.-+.+|+..++|++-.++... +-++.-|..++.+|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 35555666677788888888877666 44 8888999999999999999988887654 3345788899999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.|+..+|..+..++ .+..-+..|.++|+|.+|.+.--+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999888761 235778889999999998776433
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.66 E-value=7.4e-05 Score=51.51 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
...|.+.+++++|.+.++++.+.+|.++..+...+.+|.+.|++++|.+.++...+.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3567888889999999999998888888888888888999999999999888888776643
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=0.00021 Score=50.84 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANV-VIWGCLMGACEKFGNVKMGEWVAK 417 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 417 (471)
|+++.|+.+++++.+.....++...+-.+..+|.+.|++++|..+++..+..|+. .....+..+|.+.|++++|++.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444444444444433111112222333444444444444444444443222211 222233344444555555544444
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.64 E-value=8.9e-05 Score=50.24 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|++.|+++.+..|.+...+..++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 45688888888888888888888888888888888888888888888888776554
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.00084 Score=55.35 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=72.9
Q ss_pred HHHHHhc--CCCCHhhHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC-------------
Q 012101 279 YKVFWEI--DQPNVSSWTSMIVGYAA-----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG------------- 338 (471)
Q Consensus 279 ~~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 338 (471)
...|+.. ...+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3455554 34677778788877765 467777888889999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 012101 339 ---GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 339 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+-+-|++++++| +.+|+-||..++..+++.+++.+.+
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2345677888888 5558888888888888777766653
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.00073 Score=55.46 Aligned_cols=92 Identities=14% Similarity=-0.091 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
....|..+...+...|++++|...|++. .+.|+ ..++..+...+...|++++|...+++..+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455666777777888888888888887 33332 347888888899999999999999999988887777777777
Q ss_pred HHHH-------cCCChHHHHHHHH
Q 012101 435 NIYA-------SRGLWEEVERIRA 451 (471)
Q Consensus 435 ~~~~-------~~g~~~~A~~~~~ 451 (471)
.+|. +.|++++|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 7777 7778775444443
No 169
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.0017 Score=60.55 Aligned_cols=118 Identities=14% Similarity=0.025 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWT 294 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 294 (471)
+.+......+++.+....+.+.+..++............-..+..++++.|.+.|..+++..+++.=.. ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555554211112222233344556666666666665555554333 5556666
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
.+|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666655555554455555544444443
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.57 E-value=0.011 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHH---------HHHHHCCCCCCcchHHHHHHHHhccCCchH--HHHHHHHHHHhCCCC
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIY---------IFMSRAGVLPDCYTLPIVLKASCQLFALEI--GRQLHSLAVRLGLES 154 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~ 154 (471)
...+.+-+-.|...|.+++|..+- +.+... ..+.-.+++.=++|.+.++..- ...-++++.+.|-.|
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 344555566677777777776432 111111 1123334555566666665543 333355666777667
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
+... +...++-.|.+.+|.++|.+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 6543 44567778888888888754
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.57 E-value=0.057 Score=48.95 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..+++++-..+-.. .- .+.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 3444566667788888888888888778888888888888888888877765432 11 23667888888888888
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
..+|..+...+. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888777742 134567788888888887754444
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0013 Score=47.95 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=67.2
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHcCcC--------CHHHHHHHHHHHHHhhcCCCCCh
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGF-EPDDVTMVSVTSACGSLG--------DLELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .......+|+.| +..+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDi--L~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDI--LSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHH--HHhccCCcH
Confidence 334566667777999999999999999999 999999999999876543 345677889999 888999999
Q ss_pred hHHHHHHHHHHh
Q 012101 260 LMLNSLIDMYGK 271 (471)
Q Consensus 260 ~~~~~l~~~~~~ 271 (471)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.56 E-value=0.0041 Score=60.43 Aligned_cols=139 Identities=12% Similarity=0.030 Sum_probs=87.0
Q ss_pred CCHhhHHHHHHHHHhC--C---ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccC--------CcHHHHHHHHHHhHH
Q 012101 288 PNVSSWTSMIVGYAAN--G---LANEALDCFHYMRESGIRPNH-VTFVGVLSACVHG--------GKVQEGKHFFEMMKN 353 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 353 (471)
.|...|...+++.... + +...|..+|++..+. .|+- ..+..+..++... .+...+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5667777777765432 2 356788888888875 5553 3333332222111 122333444443322
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
......+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++.+++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112334456666666666678888888888887 66677778888888888888888888888888888887663
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0022 Score=57.74 Aligned_cols=155 Identities=10% Similarity=-0.005 Sum_probs=92.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HhccCCcHHHHHHHHHHhHHhcCCCCChhHH------------
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS--ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY------------ 364 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~------------ 364 (471)
++...|++++|.+.--...+.. ++ ..+...++ ++-..++.+.|...|++... +.|+-..-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4455677777776655554432 11 12223332 23345677777777777653 34443221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 365 -GCMVDLLGRAGLLEEARAMVEGM-PMKA-----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 365 -~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
..=..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.++..++++.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11122345677788888877776 4444 4444555555667778888888888887777765445555666667
Q ss_pred HcCCChHHHHHHHHHhhcCCCc
Q 012101 438 ASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.-.++|++|.+-++...+....
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccc
Confidence 7777888888877776655443
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0014 Score=47.36 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=46.7
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.. ...| +..++..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 334444555555555555554321 112234444555555556666666655554 2222 224555555666666666
Q ss_pred HHHHHHHHHHHhcCC
Q 012101 410 KMGEWVAKHLQELEP 424 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~ 424 (471)
+.|...+.+..+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666555443
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.52 E-value=0.002 Score=59.80 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=81.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhc
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRA 374 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 374 (471)
-...+...|++++|++.|++..+.. +-+...|..+..+|...|++++|...++.+... .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999864 335667778888899999999999999999764 34 456788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 375 GLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 375 g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
|++++|...|++. .+.|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999998 6777665554444
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.52 E-value=0.0045 Score=55.58 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHH----cCCCCC--HHHHHHHHHHhccC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHh
Q 012101 305 LANEALDCFHYMRE----SGIRPN--HVTFVGVLSACVHG-GKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGR 373 (471)
Q Consensus 305 ~~~~a~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~ 373 (471)
++++|.+.+++..+ .| .|+ ...+..+...|... |+++.|.+.|++..+.+.-... ...+..+...+.+
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR 167 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 55555555555432 22 222 23455566677777 8999999999888665432222 2345677788999
Q ss_pred cCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHc
Q 012101 374 AGLLEEARAMVEGM-------P-MKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----AYVVLSNIYAS 439 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-------~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~ 439 (471)
.|++++|.++|++. + .+.+.. .+-..+-++...||+..|...+++.....|.-.. +...|+.+|-.
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE 247 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence 99999999999987 1 122222 2333444777889999999999999887653221 44567777764
Q ss_pred --CCChHHHHHHHHHhhc
Q 012101 440 --RGLWEEVERIRAVMKH 455 (471)
Q Consensus 440 --~g~~~~A~~~~~~m~~ 455 (471)
...+++|..-|+.+..
T Consensus 248 ~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp T-CCCHHHHCHHHTTSS-
T ss_pred CCHHHHHHHHHHHcccCc
Confidence 3567777777766554
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.00057 Score=61.07 Aligned_cols=130 Identities=8% Similarity=0.069 Sum_probs=98.8
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR-AGLLEEARAMVEGM--PMKANVVIWGCLMGA 402 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~ 402 (471)
.+|..++...-+.+..+.|+.+|.+..+.. ..+..+|......-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467788888888899999999999997542 2334455555555334 56677799999998 444577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
+.+.++.+.|..+|++....-+... ..|...++.-.+.|+.+.+.++.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999987654333 378889999999999999999999887653
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.05 Score=47.45 Aligned_cols=57 Identities=25% Similarity=0.135 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHcCcCCHHHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD-VTM---VSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+-.....+.+.|++++|.+.|+++... .|+. ... ..+..++.+.++++.|...+++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334455556678888888888888765 3332 221 34556667778888888887777
No 180
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.00052 Score=59.19 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=83.4
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVK 410 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~ 410 (471)
-..+.+++++|...|.+..+ +.|+ .+.|..=..+|.+.|.++.|.+-.+.. .+.|.. .+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 36788999999999999974 3554 555667778999999999999988887 888865 59999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
+|++.|++..++.|.+......|-.+-
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 999999999999998875444444443
No 181
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.47 E-value=0.0023 Score=52.72 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=64.8
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD--CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGF 162 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 162 (471)
....|..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|+++.|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677778888888999999999998876543322 3567777778888899999999988888753 3344556666
Q ss_pred HHHHHhcCChhhHH
Q 012101 163 ISLYSKAGDFEKAR 176 (471)
Q Consensus 163 l~~~~~~g~~~~a~ 176 (471)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66777766655444
No 182
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.13 Score=50.42 Aligned_cols=324 Identities=12% Similarity=0.111 Sum_probs=177.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL---EIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
.+|+-+...+.+..|+++-+.+...-.. ....|.....-+.+..+. +.+..+-+++.. .. -+-..|.....--.
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC-CCceeHHHHHHHHH
Confidence 4677777778888888888777532111 145666666666555322 222222222211 11 23344566666666
Q ss_pred hcCChhhHHHHhccCCCC--------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARKVFDENPER--------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
.+|+.+-|..+++.=+.. +..-+...+.-+.+.|+.+-...++-.+... .+...|...+ .+..
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p 589 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQP 589 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhch
Confidence 778888888887653321 1224566667777777877777777766643 1111222111 2334
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH-HhcC-----CCCHhhHHHHHHHHHhCCC--------
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVF-WEID-----QPNVSSWTSMIVGYAANGL-------- 305 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-----~~~~~~~~~li~~~~~~~~-------- 305 (471)
.|..+|.+. .+.... ..+-+.|-...+...+-.+- +... .+-..........+.+...
T Consensus 590 ~a~~lY~~~--~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 590 LALSLYRQF--MRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred hhhHHHHHH--HHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHH
Confidence 445555544 221111 11222222222222211111 1100 1111112222333333322
Q ss_pred --hhHHHHHHHHHHH-cCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 306 --ANEALDCFHYMRE-SGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 306 --~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
..+-+.+.+.+.. .|..-...+.+--+.-+...|+-.+|.++-.+++ -||...|-.=+.+++..+++++-++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 1112222233322 2333444455556666677788888888888774 4888888888889999999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 383 MVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 383 ~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
+-+.+. .+.-|.-+..+|.+.|+.++|.+++-+.-. +.-.+.+|.+.|++.+|.++-
T Consensus 737 fAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 877773 244567788899999999999988765422 225677888888888887653
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.45 E-value=0.0086 Score=53.76 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
|+.....|...|++++|.+.|.+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHH
Confidence 444555666666777776666665
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0053 Score=59.63 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=103.7
Q ss_pred CCCCCHHHHHHHHHHhccC-----CcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhc--------CCHHHHHHHHH
Q 012101 320 GIRPNHVTFVGVLSACVHG-----GKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRA--------GLLEEARAMVE 385 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~--------g~~~~A~~~~~ 385 (471)
+.+.|...|...+.+.... +..+.|..+|++..+. .|+. ..|..+..+|... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888875432 3477899999999854 6774 3344433333221 12344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 386 GM----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 386 ~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
.. ....+...|..+.-.....|++++|...++++.+++| +...|..++.+|...|+.++|.+.+++....++..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~- 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE- 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Confidence 43 1333557788777777778999999999999999998 56789999999999999999999999998877753
Q ss_pred CCcceeec
Q 012101 462 PAYSLATR 469 (471)
Q Consensus 462 ~~~s~~~~ 469 (471)
|.+-|.+.
T Consensus 487 pt~~~~~~ 494 (517)
T PRK10153 487 NTLYWIEN 494 (517)
T ss_pred chHHHHHh
Confidence 45666554
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.42 E-value=0.00075 Score=45.14 Aligned_cols=60 Identities=22% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
+...+.+.|++++|.+.|+.. ...| +...+..+..++...|++++|...|+++.+..|.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 455677888888888888888 5556 45578888888889999999999999988888765
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.038 Score=48.14 Aligned_cols=170 Identities=12% Similarity=0.058 Sum_probs=92.4
Q ss_pred HHHhcCChHHHHHHHHhcCC--CCHh-h---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--C-
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ--PNVS-S---WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH--G- 338 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~- 338 (471)
.+.+.|++++|.+.|+.+.. |+.. . .-.++.++.+.+++++|...+++..+....-....+...+.+.+. .
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 34455666666666666654 2221 1 123445666677777777777777665322222233333333221 0
Q ss_pred --------------Cc---HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 012101 339 --------------GK---VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMG 401 (471)
Q Consensus 339 --------------~~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~ 401 (471)
.+ ...|.+.|+.+.+.+ |+. .-..+|...+..+...--..-+ .+..
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~~e~-~ia~ 183 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAKYEL-SVAE 183 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 11 223445555554442 332 2223333332222100001111 3456
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-|.+.|.+..|..-++.+.+.-|..+. ....++.+|.+.|..++|.++...+.
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 678888999999999999887776553 56678888999999999988776654
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.00082 Score=55.42 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=71.1
Q ss_pred HHHHhcccC-CCCchhhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-----------
Q 012101 73 HIIRTHMLH-SYSAAFHWNNIIRLYTRL-----EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF----------- 135 (471)
Q Consensus 73 a~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 135 (471)
....|++.. ...+-.+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 334444442 235667777777777654 556667777888888888888888888888765431
Q ss_pred -----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 136 -----ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 136 -----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+-+-|..++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 236778888888888888888888888888766543
No 188
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.40 E-value=0.11 Score=47.96 Aligned_cols=387 Identities=11% Similarity=0.041 Sum_probs=214.3
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHH--HhCCCchHHHHHHHHHHHC--CCCC---------
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLY--TRLEAPKKALDIYIFMSRA--GVLP--------- 119 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p--------- 119 (471)
..+.+|++|.. ++++.....+.+....-....|-.+..+. -+.+.+++|++.+....+. +..|
T Consensus 48 l~grilnAffl----~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL----NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH----hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 45677888875 45555555544443321134566665543 4578899999988877654 3222
Q ss_pred ---CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCC----CCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHH
Q 012101 120 ---DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLE----SNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNA 192 (471)
Q Consensus 120 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 192 (471)
|-..=+..+..+...|.+.+++.+++++...=++ -+..+|+.++-+++++=-.+--.. +...=..-|..
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~----~s~dl~pdyYe 199 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKES----MSSDLYPDYYE 199 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHh----cccccChHHHH
Confidence 1112244566788999999999999998775444 788888887766665422211111 11100112222
Q ss_pred HHHHHHcC-------------------------------CChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHcCcCCHHH
Q 012101 193 IIAGLSQD-------------------------------GRAKEAIDMFIGLKKCGFEPDDVTM-VSVTSACGSLGDLEL 240 (471)
Q Consensus 193 li~~~~~~-------------------------------~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~ 240 (471)
++..|.+. .+..--+++++.....-+.|+.... ..+...+.+ +.++
T Consensus 200 milfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~ 277 (549)
T PF07079_consen 200 MILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQ 277 (549)
T ss_pred HHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHH
Confidence 33222221 1122223333333334455554332 233444433 5666
Q ss_pred HHHHHHHHHHhhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHH-------HHHHHHHhC----
Q 012101 241 ALQVHKYVFQVKSKQKS----DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWT-------SMIVGYAAN---- 303 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-------~li~~~~~~---- 303 (471)
+..+-+.+ ......+ =..++..++....+.++...|.+.+.-+.- |+...-. .+-+..+..
T Consensus 278 ~~~~ce~i--a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~ 355 (549)
T PF07079_consen 278 VGHFCEAI--ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESY 355 (549)
T ss_pred HHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHH
Confidence 66666555 2222111 134566777777788888888877765543 4332111 222223311
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---hccCCc-HHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhc-
Q 012101 304 GLANEALDCFHYMRESGIRPNHVTFVGVLSA---CVHGGK-VQEGKHFFEMMKNVYQIEPRFAHYGCM----VDLLGRA- 374 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~- 374 (471)
-+...-+.+|.......+.- ......++.+ +-+.|. -++|.++++.+.+-. +-|...-|.+ =..|...
T Consensus 356 Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaL 432 (549)
T PF07079_consen 356 TKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQAL 432 (549)
T ss_pred HHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHH
Confidence 12334445555555443221 1122222222 333444 788999998886431 2232222221 1233322
Q ss_pred --CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 375 --GLLE---EARAMVEGMPMKA----NVVIWGCLMGA--CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 375 --g~~~---~A~~~~~~m~~~p----~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
..+. +-..++++.|+.| +...-|.|..| +..+|++.++.-.-..+.+..| ++.+|..++-++....++
T Consensus 433 s~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y 511 (549)
T PF07079_consen 433 SMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY 511 (549)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH
Confidence 1122 2333444556665 34455666654 5688999999999999999999 788999999999999999
Q ss_pred HHHHHHHHHhhc
Q 012101 444 EEVERIRAVMKH 455 (471)
Q Consensus 444 ~~A~~~~~~m~~ 455 (471)
++|++++.++.-
T Consensus 512 ~eA~~~l~~LP~ 523 (549)
T PF07079_consen 512 QEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHhCCC
Confidence 999999998765
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.002 Score=55.63 Aligned_cols=98 Identities=18% Similarity=0.131 Sum_probs=81.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 377 (471)
-..+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 4567899999999999999862 34666777788899999999999999888864 3555 46899999999999999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
++|.+.|++. .+.|+-.+|-.=+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999998 8999877665544
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0024 Score=56.11 Aligned_cols=84 Identities=10% Similarity=-0.011 Sum_probs=38.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChH
Q 012101 373 RAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWE 444 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 444 (471)
+.|++++|...|+.+ ...|+. ..+.-+..+|...|++++|...|+.+.+..|.++. .+..++.+|...|+++
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 344444444444444 222221 23334444555555555555555555544443322 2333344454555555
Q ss_pred HHHHHHHHhhcC
Q 012101 445 EVERIRAVMKHR 456 (471)
Q Consensus 445 ~A~~~~~~m~~~ 456 (471)
+|.++++.+.+.
T Consensus 235 ~A~~~~~~vi~~ 246 (263)
T PRK10803 235 KAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.33 E-value=0.025 Score=45.46 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=81.6
Q ss_pred CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 012101 321 IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIW 396 (471)
Q Consensus 321 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 396 (471)
+.|+...-..|..+....|+..+|...|++...- -+.-|....-.+.++....+++..|...++.+ ...| +..+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 3566666666677777777777777777776542 33455666666777777777777777777776 2122 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
-.+.+.+...|.+..|+..|+...+.-|. +..-......+.++|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 44556777777777777777777776653 3444555666777776666554333
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.0031 Score=49.85 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=65.5
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (471)
-+...|++++|..+|.-+ -..| |..-|..|..+|-..+++++|...+.....+.+.+|..+...+.+|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345678888888888777 2222 55566777777777888888888888888777777777888888888888888888
Q ss_pred HHHHHhhcC
Q 012101 448 RIRAVMKHR 456 (471)
Q Consensus 448 ~~~~~m~~~ 456 (471)
+.|+...+.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 888777663
No 193
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.22 E-value=0.07 Score=48.94 Aligned_cols=159 Identities=16% Similarity=0.074 Sum_probs=96.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC-C------HhhHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQP-N------VSSWTSMIVGYAA---NGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
.++-.|....+++...++++.+... + ...-....-++-+ .|+.++|.+++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777777777777777652 1 1111223334445 6788888888888655555677777776666
Q ss_pred Hhcc---------CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH----HHHHHH---HhC-------CCC
Q 012101 334 ACVH---------GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE----EARAMV---EGM-------PMK 390 (471)
Q Consensus 334 ~~~~---------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~~ 390 (471)
.|-. ....++|...|.+.- .+.|+...--.++..+...|... +..++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 223667777777654 44565544333333333334321 222222 111 223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.|-..+.+++.++.-.||+++|.+..+++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 46677888999999999999999999999988754
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.007 Score=45.85 Aligned_cols=82 Identities=15% Similarity=-0.024 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHcCC
Q 012101 370 LLGRAGLLEEARAMVEGM---PMKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYASRG 441 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g 441 (471)
++-..|+.++|..+|++. +.... ...+-.+..++...|++++|..++++.....|. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 22211 123444445555555555555555555554443 2223333444555555
Q ss_pred ChHHHHHHHH
Q 012101 442 LWEEVERIRA 451 (471)
Q Consensus 442 ~~~~A~~~~~ 451 (471)
+.++|++.+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 5555555443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.012 Score=44.50 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=50.2
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPD--DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDM 268 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~ 268 (471)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++.. ...... .+......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~--~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA--LEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHCCCccccHHHHHHHHHH
Confidence 34455566777777777777777765543 234445566666777777777777766 332111 111222222334
Q ss_pred HHhcCChHHHHHHHHhc
Q 012101 269 YGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~ 285 (471)
+...|+.++|...+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 45556666666555443
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.19 E-value=0.31 Score=48.97 Aligned_cols=416 Identities=12% Similarity=0.025 Sum_probs=221.7
Q ss_pred chhHHHHHHhhhchhhhhH--HHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVT--ISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIR 94 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~ 94 (471)
|..++.++.-.+-.+...+ +.+....++- +|.. +...+-..|.. .+..++|..++++... -|+..-...+.-
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~-tLq~l~~~y~d---~~~~d~~~~~Ye~~~~~~P~eell~~lFm 118 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDL-TLQFLQNVYRD---LGKLDEAVHLYERANQKYPSEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchH-HHHHHHHHHHH---HhhhhHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 5556666655554333323 2332222222 2555 77888888888 8889999999998764 366555666777
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-Cc---------hHHHHHHHHHHHhC-CCCCcchHHHHH
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-AL---------EIGRQLHSLAVRLG-LESNEFCESGFI 163 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---------~~a~~~~~~~~~~~-~~~~~~~~~~ll 163 (471)
+|+|.+++.+-.+.--+|-+. .+-+.+.|=.+++...+.. .. .-|....+.+.+.+ --.+..-...-.
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 889988887655555555442 3445566656666554432 11 23455555555543 111111122233
Q ss_pred HHHHhcCChhhHHHHhcc-----CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHc----C
Q 012101 164 SLYSKAGDFEKARKVFDE-----NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACG----S 234 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~ 234 (471)
..+...|++++|.+++.. ....+...-+--+..+...+++.+..++-.++...| +|. |...+.... .
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~ 273 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLEL 273 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHh
Confidence 455678899999999832 233344445566777888899999999999999886 343 333222211 1
Q ss_pred c------------CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh---cCChHHHHHHH-HhcCCCCHhhHHHHHH
Q 012101 235 L------------GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK---CGRMDLAYKVF-WEIDQPNVSSWTSMIV 298 (471)
Q Consensus 235 ~------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~-~~~~~~~~~~~~~li~ 298 (471)
. +..+...+..... + |. .....|-+-+.++.+ -|+.+++...| ++.- +...|..=+.
T Consensus 274 ~~~~~a~~~~s~~~~l~~~~ek~~~~--i--~~-~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kpcc~~Dl~ 346 (932)
T KOG2053|consen 274 LNKEPAEAAHSLSKSLDECIEKAQKN--I--GS-KSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKPCCAIDLN 346 (932)
T ss_pred cccccchhhhhhhhhHHHHHHHHHHh--h--cc-cccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCcHhHhhHH
Confidence 1 0111111111111 1 11 112233344444433 36666654333 3332 2233444445
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHH----H---HHHHHHHhccCCc-----HHHHHHHHHHhHHh--cC------CC
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHV----T---FVGVLSACVHGGK-----VQEGKHFFEMMKNV--YQ------IE 358 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~---~~~ll~~~~~~~~-----~~~a~~~~~~~~~~--~~------~~ 358 (471)
.|...=..+.-..++...... .++.. . +...+..-.-.|. .+.-..++.+.... +| +-
T Consensus 347 ~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll 424 (932)
T KOG2053|consen 347 HYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLL 424 (932)
T ss_pred HhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccc
Confidence 555555667777777776644 22222 0 1112211111221 22233333222211 12 22
Q ss_pred CChh---------HHHHHHHHHHhcCCHHH---HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 359 PRFA---------HYGCMVDLLGRAGLLEE---ARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 359 p~~~---------~~~~li~~~~~~g~~~~---A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
|+.. +.+.|++.+.+.++... |.-+++.. ...| |..+--.+++.|+-.|-+..|.+.++.+.-.+.
T Consensus 425 ~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I 504 (932)
T KOG2053|consen 425 PTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI 504 (932)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh
Confidence 3322 24577888999888764 44455554 4445 455666688999999999999999988754443
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 425 WSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 425 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
..+..=..+...+...|++..+...++.
T Consensus 505 Q~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 505 QTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred hhccchHHHHHHHHhcccchhHHHHHHH
Confidence 3333333344445555666665555443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.079 Score=45.19 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCC--C--------cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPER--K--------LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV 228 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (471)
++.|.+.+.-..-.++-...++.-..+ . ....+.++..+.-.|.+.-.+..+.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455665555444444444444432221 1 123456666666677777777777777776555666677777
Q ss_pred HHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH-----HHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHH
Q 012101 229 TSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSL-----IDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGY 300 (471)
Q Consensus 229 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 300 (471)
++...+.||.+.|...|+.+ .+.....+....+.+ ...|.-.+++..|...|.++.. .|+..-|.-.-+.
T Consensus 219 gr~~MQ~GD~k~a~~yf~~v--ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDV--EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHhcccHHHHHHHHHHH--HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 77777788888888888776 443333333333322 2345556667777777766654 2333334333333
Q ss_pred HhCCChhHHHHHHHHHHHc
Q 012101 301 AANGLANEALDCFHYMRES 319 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~ 319 (471)
.-.|+..+|++.++.|.+.
T Consensus 297 lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4456667777777777665
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.17 E-value=0.006 Score=50.00 Aligned_cols=81 Identities=12% Similarity=-0.069 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLP--DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777888888888888888887653222 12466777777888888888888888877642 22334444455
Q ss_pred HHHH
Q 012101 164 SLYS 167 (471)
Q Consensus 164 ~~~~ 167 (471)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5554
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.16 E-value=0.0041 Score=56.03 Aligned_cols=130 Identities=11% Similarity=-0.018 Sum_probs=92.6
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHH---hHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEM---MKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-------PM-KANVV 394 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 394 (471)
.|..|-..|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667899998876654 223334322 2346778888999999999999988875 22 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQE----LE--PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+..+|.++|.-..++++|+.++.+-.. ++ ......+..|..+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777888888888899999998876543 32 223357899999999999999999887765543
No 200
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.14 E-value=0.016 Score=45.66 Aligned_cols=90 Identities=12% Similarity=-0.003 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
...+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|...|... .... +-|+..+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A--~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRA--AQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhcC-CCCchHHHHHHHHH
Confidence 3344444445555555555555554432 223333344444444555555555555554 2222 12333444444455
Q ss_pred HhcCChHHHHHHHH
Q 012101 270 GKCGRMDLAYKVFW 283 (471)
Q Consensus 270 ~~~g~~~~A~~~~~ 283 (471)
...|+.+.|++.|+
T Consensus 114 L~lG~~~~A~~aF~ 127 (157)
T PRK15363 114 LACDNVCYAIKALK 127 (157)
T ss_pred HHcCCHHHHHHHHH
Confidence 55555555555444
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.0008 Score=45.49 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 4567777777777776542 224555566777777777777777777777 555664444443
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.10 E-value=0.0018 Score=43.86 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG-NVKMGEWVAKHLQELEP 424 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 424 (471)
+...|..+...+...|++++|...|++. ...| +...|..+..++...| ++++|++.+++..+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777777888888888888888877 5555 4457777888888888 68888888888887765
No 203
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.0076 Score=46.14 Aligned_cols=51 Identities=8% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 320 GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
...|+..+..+++.+|+..+++..|.++.+.+.+.++++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777788888888888888888888888887777777777777777663
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.36 Score=47.53 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGK 345 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 345 (471)
+.-+...|+..+|.++-.+..-||...|..-+.+++..+++++-+++-+.++ .+.-|.-.+.+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHh
Confidence 3334444555555555555555555555555555555555444444333221 1223444444555555555555
Q ss_pred HHHHHh
Q 012101 346 HFFEMM 351 (471)
Q Consensus 346 ~~~~~~ 351 (471)
+++.+.
T Consensus 765 KYiprv 770 (829)
T KOG2280|consen 765 KYIPRV 770 (829)
T ss_pred hhhhcc
Confidence 544444
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.26 Score=48.07 Aligned_cols=312 Identities=12% Similarity=0.074 Sum_probs=167.2
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----cchHHHHHHHHhccCCchHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD----CYTLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~ 142 (471)
.|++++|.+++-++..+ | ..|..+.+.|++-...++++. .|-..| ...|+.+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drr-D-----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR-D-----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchh-h-----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688888888777643 3 356777788888777766643 111111 3457777777777778888888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 143 LHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
.|..... -...+.++.+..++++-+.+-+.+++. ....-.+..++...|.-++|.+.|-+. + .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-- 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-- 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc--
Confidence 8876421 123667777777888777777777653 334455666777777777776665432 1 12
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH--------------HHHHHHHHhcCChHHHHHHHHhcCC-
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML--------------NSLIDMYGKCGRMDLAYKVFWEIDQ- 287 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~- 287 (471)
...+..|...++|.+|.++-+.. . -|.+.+. .--|..+.+.|+.-+|.+++.+|.+
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq~~--~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQRF--Q----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhc--c----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 12344555666666666554432 1 1111110 1124456667777777777777754
Q ss_pred ------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 288 ------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 288 ------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
|-...-...+-+..-..++.++.+-.++...+|...+... | ...+-..++-.+.+..-. | ...
T Consensus 953 e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~---l----les~~l~~~~ri~~n~Wr--g--AEA 1021 (1189)
T KOG2041|consen 953 EQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD---L----LESGLLAEQSRILENTWR--G--AEA 1021 (1189)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---h----hhhhhhhhHHHHHHhhhh--h--HHH
Confidence 2111111111111222334444444455445554433322 1 122233333333332211 1 222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+|-.|.+-....|..+.|++.--.+ .+-|-...|..+.-+-+....+.-.-+.|-++....
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Confidence 33444444455678888887764444 455666677766655555555555555555544433
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.17 Score=40.85 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSW 293 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 293 (471)
-|+...-..+..+....|+..+|...|++. ...-+..|..+.-.+.++....+++..|...++++.+ ..+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qa--lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQA--LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHH--hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 455555556666666666666666666666 5444555566666666666666666666666665544 122233
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
-.+...+...|.+.+|..-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 34455556666666666666666554
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.88 E-value=0.33 Score=44.03 Aligned_cols=284 Identities=17% Similarity=0.127 Sum_probs=176.8
Q ss_pred HHHHHHHHHh--cCChhhHHHHhccC---CCCCcchHHHHHH--HHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 012101 159 ESGFISLYSK--AGDFEKARKVFDEN---PERKLGSWNAIIA--GLSQDGRAKEAIDMFIGLKKCGFEPDDV--TMVSVT 229 (471)
Q Consensus 159 ~~~ll~~~~~--~g~~~~a~~~~~~~---~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li 229 (471)
|.+|-.++.. .||-..|.++-.+- ...|-...-.++. +-.-.|+++.|.+-|+.|... |... ....|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 4444444433 45666666665432 2334333333333 233468899999999888743 3222 222334
Q ss_pred HHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHh--hHHHHHHHHHh
Q 012101 230 SACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVS--SWTSMIVGYAA 302 (471)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~ 302 (471)
-..-+.|+.+.|.++-+.. -.. -+.-...+.+.+...|..|+++.|.++++.-.. ++.. .-..|+.+-..
T Consensus 162 leAqr~GareaAr~yAe~A--a~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 162 LEAQRLGAREAARHYAERA--AEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHhcccHHHHHHHHHHH--Hhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 4445778888888887766 221 122356778889999999999999999886543 4432 22233332221
Q ss_pred ---CCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 303 ---NGLANEALDCFHYMRESGIRPNHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 303 ---~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.-+...|...-.+..+ +.||..-- .....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt- 310 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT- 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc-
Confidence 2345556655554443 46665432 23346788999999999999998654 5666554332 33455543
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-cCCChHHHHHHHHH
Q 012101 379 EARAMVEGM----PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA-SRGLWEEVERIRAV 452 (471)
Q Consensus 379 ~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~ 452 (471)
+..=+++. ..+| +..+...+..+-...|++..|..--+...+..|. .++|..|.+.-. ..|+-.++...+-+
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 22223322 4556 4567777888889999999999888888888874 457888888765 45999999999988
Q ss_pred hhcCCC
Q 012101 453 MKHRNL 458 (471)
Q Consensus 453 m~~~~~ 458 (471)
.....-
T Consensus 389 av~APr 394 (531)
T COG3898 389 AVKAPR 394 (531)
T ss_pred HhcCCC
Confidence 776543
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.85 E-value=0.022 Score=50.12 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCL 399 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l 399 (471)
..|...+....+.|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555545668888888888888766421110 235556778888888888888888887 32332 3455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
..++...|+.++|..+++++.+..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6777788999999999999988888654
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.062 Score=45.52 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHH
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 447 (471)
+...|.+.|.+..|..-++.+.+.-|.++. ....++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456678888888888888888888776553 4557778888888877544
No 210
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.83 E-value=0.082 Score=39.94 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=85.4
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+.|-. ....++..|...|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc----
Confidence 4467788888888887764 255667777655555455555566666664333222211 12234444444432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+....+..+.+....|+-+.-.++...+.+.+..+|.....+..+|.+.|+..++.+++++.-+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 45556667788889999999999999988766667888889999999999999999999999888874
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.17 Score=43.31 Aligned_cols=136 Identities=15% Similarity=0.060 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH--
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV-- 368 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li-- 368 (471)
...+.++....-.|.+.-....+++.++....-+......+.+.-++.|+.+.|...|++..+..+ ..+....+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777777888999999999999976666778888888889999999999999998755422 33333444333
Q ss_pred ---HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 369 ---DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 369 ---~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
..|.-.+++..|...+.+. ...| |....|.-.-+..-.|+...|.+.++.+....|.+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3455667888888888887 2222 455555544455567899999999999998887544
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.097 Score=50.38 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHhccCCC-----------CCcchHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCC
Q 012101 154 SNEFCESGFISLYSKAGDFEKARKVFDENPE-----------RKLGSWNAIIAGLSQDGR--AKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 220 (471)
+....+.+-+..|...|.+++|.++----.. -+...++..-.+|.+..+ +-+.+.-+++++++|-.|
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P 633 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP 633 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc
Confidence 3344455556667788888877665321110 011134444455655544 334455567777888778
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+.... ...|+-.|.+.+|.++|.+-
T Consensus 634 ~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 634 NDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 76543 34455677888888887543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.73 E-value=0.0066 Score=41.58 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=46.5
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
..|.+.+++++|.+.++++ ...| +...|.....++.+.|++++|.+.+++..+..|.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4677788888888888888 5555 4456777778888888888888888888888886654
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.69 E-value=0.02 Score=43.87 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhH--------------HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMK--------------NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--- 387 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 387 (471)
..++..++.++++.|+.+....+++..= ....+.|+..+..+++.+|+..|++..|.++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555555555555555443321 11233444444455555555555555554444443
Q ss_pred -CCCCCHHHHHHHHH
Q 012101 388 -PMKANVVIWGCLMG 401 (471)
Q Consensus 388 -~~~p~~~~~~~l~~ 401 (471)
+++.+..+|..|++
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334444444443
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.1 Score=50.40 Aligned_cols=161 Identities=17% Similarity=0.079 Sum_probs=110.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESG-IRPNH-----VTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
..++....-.|+-+.+++.+.+-.+.+ ++-.. -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 345555556677777777777655432 22111 123333333332 45778899999999876 477766
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH-HH
Q 012101 364 YGCMV-DLLGRAGLLEEARAMVEGM-PMK-----ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL-SN 435 (471)
Q Consensus 364 ~~~li-~~~~~~g~~~~A~~~~~~m-~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-~~ 435 (471)
|...- +.+...|++++|.+.|++. ..+ .....+--+...+.-..++++|...|.++.+.+.++..+|..+ +-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 65433 5667789999999999976 111 1334566677788899999999999999999888877777654 44
Q ss_pred HHHcCCCh-------HHHHHHHHHhhcCC
Q 012101 436 IYASRGLW-------EEVERIRAVMKHRN 457 (471)
Q Consensus 436 ~~~~~g~~-------~~A~~~~~~m~~~~ 457 (471)
++...|+. ++|.++|+++....
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 56677888 89999998886543
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.60 E-value=0.54 Score=42.75 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=178.0
Q ss_pred hHHHHHHhcccCCCCchhhHHHHHHHHHh--CCCchHHHHHHHHHHHCCCCCCcchHHHHHHH--HhccCCchHHHHHHH
Q 012101 70 IYAHIIRTHMLHSYSAAFHWNNIIRLYTR--LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA--SCQLFALEIGRQLHS 145 (471)
Q Consensus 70 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~ 145 (471)
...+.+.|..-.. | ..|.+|-.++.- .|+-..|.++-.+-.+. +..|......++.+ ..-.|+++.|.+-|+
T Consensus 69 P~t~~Ryfr~rKR--d-rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 69 PYTARRYFRERKR--D-RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred cHHHHHHHHHHHh--h-hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3445555554432 2 457777777765 46777777766655422 45566666666654 455799999999999
Q ss_pred HHHHhCCCCCcch--HHHHHHHHHhcCChhhHHHHhccCCCC--C-cchHHHHHHHHHcCCChhHHHHHHHHHHHCC-CC
Q 012101 146 LAVRLGLESNEFC--ESGFISLYSKAGDFEKARKVFDENPER--K-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCG-FE 219 (471)
Q Consensus 146 ~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~ 219 (471)
.|.. .|.... ...|.----+.|+.+.|...-+...+. . ...+.+.+...+..|+|+.|+++++.-+... +.
T Consensus 145 AMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 9985 222221 222332334668888888777665432 2 2368889999999999999999998776543 34
Q ss_pred CCHHHH--HHHHHHHc---CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhh
Q 012101 220 PDDVTM--VSVTSACG---SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSS 292 (471)
Q Consensus 220 p~~~~~--~~li~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 292 (471)
++..-- ..|+.+-. -..+...|...-.+...++.++.|-. -.-..++.+.|+..++-.+++.+-+ |.+..
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaa---v~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAA---VVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHH---HHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 444322 22332221 12245556655554422333333322 2234567888888888888887765 44443
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRES-GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
+... .+.+.|+ .+..-+++..+. .++|| ......+..+-...|++..|..--+... ...|....|..|.+.
T Consensus 299 a~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdI 371 (531)
T COG3898 299 ALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADI 371 (531)
T ss_pred HHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHH
Confidence 3322 2334443 333333333221 23444 4455566677777788877776666664 336777777777776
Q ss_pred HHh-cCCHHHHHHHHHhC
Q 012101 371 LGR-AGLLEEARAMVEGM 387 (471)
Q Consensus 371 ~~~-~g~~~~A~~~~~~m 387 (471)
-.. .|+-.++...+-+.
T Consensus 372 eeAetGDqg~vR~wlAqa 389 (531)
T COG3898 372 EEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HhhccCchHHHHHHHHHH
Confidence 544 48888888877776
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.012 Score=54.70 Aligned_cols=99 Identities=10% Similarity=-0.105 Sum_probs=72.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV----IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
.+...++.+..+|.+.|++++|...|++. .+.|+.. +|..+..+|...|+.++|...++++.+... + .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn--~-~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN--L-KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--h-hHHHH
Confidence 34567888889999999999999999986 7778743 588899999999999999999999988742 1 23211
Q ss_pred HH--HHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 434 SN--IYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 434 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.. .+....+.++..++++.+...|...
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 11 1223334557778888888777643
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.1 Score=45.61 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC-CCCC-CHHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GLLEEARAMVEGM-PMKA-NVVIW 396 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p-~~~~~ 396 (471)
+-|...|..|-..|...|+++.|..-|....+..| ++...+..+..++... ....++..+|+++ ..+| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55788999999999999999999999999976544 4445566666655433 2456789999999 6666 55677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
..|...+...|++.+|...|+.|.+..|.+. .+..+++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 7788899999999999999999999887543 3444443
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.53 E-value=0.41 Score=40.51 Aligned_cols=56 Identities=21% Similarity=0.091 Sum_probs=29.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGF--EPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
....+...|++.+|...|+.+...-. +--......++.++.+.|+++.|...++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445556667777777766665411 111233445555666666666666666666
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.52 E-value=0.0021 Score=36.22 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
+++..+.+|.++..|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678889999999999999999999999999863
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.45 E-value=0.0068 Score=42.18 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQEL----EPWS---DGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
.+++.+...|...|++++|+..+++..+. ++.+ ..++..++.+|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555566666666666666666655543 1111 124555666666666666666666554
No 222
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.45 E-value=0.63 Score=41.68 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCcCCHHH---HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-C--CHhhHHHHH
Q 012101 224 TMVSVTSACGSLGDLEL---ALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-P--NVSSWTSMI 297 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~li 297 (471)
++..++.++...+..+. |..+++.+ ....+-.+.++-.-+..+.+.++.+.+.+++.+|.. . ....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l---~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLL---ESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHH---HHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 34455555555554433 33333333 122222233444445555556666666666665543 1 223333333
Q ss_pred HHHHh--CCChhHHHHHHHHHHHcCCCCCH
Q 012101 298 VGYAA--NGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 298 ~~~~~--~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
..+.. ......+...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 33311 12234455555555444444443
No 223
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.01 Score=41.26 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-------P-MKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.+++.+...|...|++++|+..|++. + ..|+ ..++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57888999999999999999999887 2 2233 45788899999999999999999988653
No 224
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.42 E-value=0.0073 Score=36.50 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
++..+..+|...|++++|++.++++.+..|.++..+..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 56778888888999999999999999888888777766543
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.36 E-value=0.018 Score=45.89 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
...++..+...|+++.|...++++....|.+...|..++.+|...|+..+|.+.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455556666666666666666666666566666666666666666666666555
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.30 E-value=0.026 Score=51.14 Aligned_cols=258 Identities=14% Similarity=0.098 Sum_probs=154.2
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCc----chHHHHHHHHhccCCchHHHHHHHHH--HH--hCCC-CCcchHHHHHHH
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDC----YTLPIVLKASCQLFALEIGRQLHSLA--VR--LGLE-SNEFCESGFISL 165 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~ll~~ 165 (471)
-+++.|+....+.+|+...+.|.. |. .+|..|-++|.-.+++++|.+++..= +. .|-+ -.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478889999999999999888743 43 34666667777778888888875431 11 1100 011222334444
Q ss_pred HHhcCChhhHHHHhcc-CC---C---C--CcchHHHHHHHHHcCCC--------------------hhHHHHHHHHH---
Q 012101 166 YSKAGDFEKARKVFDE-NP---E---R--KLGSWNAIIAGLSQDGR--------------------AKEAIDMFIGL--- 213 (471)
Q Consensus 166 ~~~~g~~~~a~~~~~~-~~---~---~--~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m--- 213 (471)
+--.|.+++|...-.+ +. + + ...++..+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555667666544322 10 0 0 11234445555544332 23333443321
Q ss_pred -HHCCCC-CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhcC--
Q 012101 214 -KKCGFE-PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ---KSDTLMLNSLIDMYGKCGRMDLAYKVFWEID-- 286 (471)
Q Consensus 214 -~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 286 (471)
.+.|-. .-...|..+-+.|.-.|+++.|...++.-..+...+ ......+..+.+++.-.|+++.|.+.|+.-.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111100 112356666667777889999988877553222221 1234567888899999999999998887543
Q ss_pred -----C--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHH----c-CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 287 -----Q--PNVSSWTSMIVGYAANGLANEALDCFHYMRE----S-GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 287 -----~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
. ....+..+|...|.-..++++|+.++.+-.. . ...-....+..|..+|...|..++|..+.+...+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 2334566777888888888899888775432 1 1233456788888889888999988877765543
No 227
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.46 Score=43.48 Aligned_cols=147 Identities=16% Similarity=0.041 Sum_probs=82.4
Q ss_pred HcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH--HHHhcCChHHHHHHHHhcCCCCHhhHHH-----HHH------
Q 012101 232 CGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID--MYGKCGRMDLAYKVFWEIDQPNVSSWTS-----MIV------ 298 (471)
Q Consensus 232 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----li~------ 298 (471)
+...++.+.|.++--.+ .+... ...+..+++ ++.-.++.+.|...|++....|+....+ +..
T Consensus 179 l~~~~~~~~a~~ea~~i--lkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDI--LKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHH--Hhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 35667778877776666 33321 112333332 3345677788888888777633322211 111
Q ss_pred ----HHHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHH--HH
Q 012101 299 ----GYAANGLANEALDCFHYMRES---GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCM--VD 369 (471)
Q Consensus 299 ----~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l--i~ 369 (471)
-..+.|++..|.+.|.+.... ++.|+...|.....+..+.|+.++|+.-.++..+ +.|. .....+ ..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~s-yikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSS-YIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHH-HHHHHHHHHH
Confidence 234567777777777776643 3445555566666666777777777777776652 2222 122222 23
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 012101 370 LLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m 387 (471)
++...+++++|.+-++..
T Consensus 330 c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444556777777777665
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.13 Score=45.47 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHH----HHHHHhcCCHH
Q 012101 303 NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCM----VDLLGRAGLLE 378 (471)
Q Consensus 303 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~ 378 (471)
.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.....++++... ..|+...|..+ .-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555666666554 3444455555555666666666666666665432 23444333222 22334566666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
+|++.-++. .+.| |...-.++...+-..|+.+++.++..+-...=.. -...|....-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665 4444 4445555555555666666666665544321110 012344455555666666666666665
Q ss_pred hhcCCCccCCC
Q 012101 453 MKHRNLAKIPA 463 (471)
Q Consensus 453 m~~~~~~~~~~ 463 (471)
=.-....+..+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 44444444444
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.14 E-value=0.068 Score=46.03 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=82.3
Q ss_pred HHHHHHHhcC--CCCHhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC----------
Q 012101 277 LAYKVFWEID--QPNVSSWTSMIVGYAAN-----GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG---------- 339 (471)
Q Consensus 277 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 339 (471)
-.++.|.... +.|..+|-+++..+... +.++-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 47778888888777643 567777788889999999999999999999876542
Q ss_pred ------cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH-HHHHHHHhC
Q 012101 340 ------KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE-EARAMVEGM 387 (471)
Q Consensus 340 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~~m 387 (471)
+-+-+++++++| +.+|+.||..+-..+++++++.+-+- +..+++--|
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 334578899999 66799999999999999998887643 344444444
No 230
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.09 E-value=1.9 Score=43.59 Aligned_cols=113 Identities=10% Similarity=-0.068 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 304 GLANEALDCFHYMRESG-IRPNHV--TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.+.|..++....... ..+... ....+.......+...++...+...... ..+......-+....+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566777776654332 222221 2223322222222244555555544321 12333444445555567777777
Q ss_pred HHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 381 RAMVEGMP--MKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 381 ~~~~~~m~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
...+..|+ ..-...-.-=+.+++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777761 1111111111344545567777777777765
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.93 E-value=0.027 Score=44.81 Aligned_cols=72 Identities=11% Similarity=-0.020 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH-----hCCCCCcchH
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR-----LGLESNEFCE 159 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 159 (471)
.....++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 356667888889999999999999998875 45788999999999999999999999998753 5888887654
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.91 Score=38.59 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHcCCChHHHHHH
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELE----PWSDGAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
|...|-.+....|+..|+..++.--+.+ +.+..+...|+.+|-. |+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 3444444455556666666665544332 2223344455555433 455555444
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.92 E-value=0.31 Score=37.88 Aligned_cols=57 Identities=21% Similarity=0.095 Sum_probs=34.5
Q ss_pred HhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 372 GRAGLLEEARAMVEGM----PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.+.|++++|.+.|+.+ +..| ....--.++.+|.+.++++.|...+++..++.|.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3556666666666665 1112 2334555666777777777777777777777766553
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.15 Score=46.42 Aligned_cols=95 Identities=17% Similarity=0.048 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
.++..+.-+|.+.+++..|.+..+.. ... +|...+-.=..+|...|+++.|+..|+++.+..|.|..+-.-++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778889999999999988887 444 4777888888999999999999999999999999998777777777666
Q ss_pred CCChHH-HHHHHHHhhcC
Q 012101 440 RGLWEE-VERIRAVMKHR 456 (471)
Q Consensus 440 ~g~~~~-A~~~~~~m~~~ 456 (471)
...+.+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555444 47788888654
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.91 E-value=0.86 Score=42.03 Aligned_cols=89 Identities=12% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCC---Ccc----hHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 160 SGFISLYSKAGDFEKARKVFDENPER---KLG----SWNAIIAGLSQ---DGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
..++-+|-...+++...++.+.+... ++. .-....-++.+ .|+.++|++++..+......++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888889888888887654 111 12233344555 789999999998866666678888888777
Q ss_pred HHHcC---------cCCHHHHHHHHHHH
Q 012101 230 SACGS---------LGDLELALQVHKYV 248 (471)
Q Consensus 230 ~~~~~---------~~~~~~a~~~~~~~ 248 (471)
..|-. ....++|...|.+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 66521 12345566665554
No 236
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.86 E-value=0.064 Score=46.19 Aligned_cols=113 Identities=7% Similarity=-0.042 Sum_probs=82.9
Q ss_pred hHHHHHHhcccC-CCCchhhHHHHHHHHHhC-----CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC--------
Q 012101 70 IYAHIIRTHMLH-SYSAAFHWNNIIRLYTRL-----EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-------- 135 (471)
Q Consensus 70 ~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------- 135 (471)
+-..+..|...+ ...|-.+|-+.+..+... +.++-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 344555666665 346777888888887654 556777788899999999999999999999776543
Q ss_pred --------CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh-hhHHHHhccC
Q 012101 136 --------ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDF-EKARKVFDEN 182 (471)
Q Consensus 136 --------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 182 (471)
+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2245778899999999999999999999998877643 3344443333
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.83 E-value=1.1 Score=38.64 Aligned_cols=58 Identities=19% Similarity=0.132 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+.+.|.+.|.+..|..-++++.+.-+..+. .+..+.++|...|..++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 456788889999999889888887655443 4556778888999999888876666544
No 238
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.75 E-value=1.7 Score=40.45 Aligned_cols=377 Identities=9% Similarity=0.014 Sum_probs=204.5
Q ss_pred HHHHhcccCCC-CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 012101 73 HIIRTHMLHSY-SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLG 151 (471)
Q Consensus 73 a~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 151 (471)
-+++-+++.+. .|+.+|-.+|.-+...|.+++..+++++|..- .+-=...|..-+.+-...+++..++.+|.+.+...
T Consensus 28 ~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 28 ELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 33555666653 47889999999999999999999999999743 23345678878887777789999999999998754
Q ss_pred CCCCcchHHHHHHHHHhcCCh---------hhHHHHhcc--CCCC-CcchHHHHHHH---HHcCCCh------hHHHHHH
Q 012101 152 LESNEFCESGFISLYSKAGDF---------EKARKVFDE--NPER-KLGSWNAIIAG---LSQDGRA------KEAIDMF 210 (471)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~---------~~a~~~~~~--~~~~-~~~~~~~li~~---~~~~~~~------~~a~~~~ 210 (471)
+ +...|...+.-.-+.... -+|.++.-. +-++ ....|+..+.. .-..|.+ +...+.|
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 456666666544333321 122222111 1112 22245554443 3333444 4445566
Q ss_pred HHHHHCCCCC------CHHHHHHHHHHHc-------CcCCHHHHHHHHHHHHHhhcCCCC----ChhHH-----------
Q 012101 211 IGLKKCGFEP------DDVTMVSVTSACG-------SLGDLELALQVHKYVFQVKSKQKS----DTLML----------- 262 (471)
Q Consensus 211 ~~m~~~g~~p------~~~~~~~li~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~----------- 262 (471)
.+|..-.+.- |-..|..-++... ...-+-.|.+.++++..+..|... +..++
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 6666432110 1111111111100 011123344444444222222211 11111
Q ss_pred ---------------------------HHHH--------------HHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHH
Q 012101 263 ---------------------------NSLI--------------DMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVG 299 (471)
Q Consensus 263 ---------------------------~~l~--------------~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~ 299 (471)
+-.+ .-+...++-+.|......-.+ |+... -+-..
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~--~lse~ 342 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM--FLSEY 342 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe--eHHHH
Confidence 1111 111233444455554443332 22100 01111
Q ss_pred HHhCCChhHHHHHHHHH-----------------------------HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 300 YAANGLANEALDCFHYM-----------------------------RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m-----------------------------~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
|-..++-+.....|++. .-+...--...|...+..-.+...++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 11112222222211111 0000111223456666666777788899999999
Q ss_pred hHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C
Q 012101 351 MKNVYQ-IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVI-WGCLMGACEKFGNVKMGEWVAKHLQELEP--W 425 (471)
Q Consensus 351 ~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 425 (471)
..+. | +.+++..+++++..++ .|+...|..+|+-- ..-||... -+..+..+...++-+.|..+|+.....-. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9766 5 6788888888888665 56777888888765 44455544 35567777888999999999985543221 1
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
-..+|..++..-..-|+...+..+=++|.+.
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 2347888888888888888777766666543
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.75 E-value=0.062 Score=50.05 Aligned_cols=97 Identities=9% Similarity=-0.017 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA----HYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWG 397 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 397 (471)
.+...++.+..+|.+.|++++|...|++..+. .|+.. .|..+..+|...|+.++|.+.+++. ...+. .|.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~--~f~ 147 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL--KFS 147 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch--hHH
Confidence 35667888888999999999999999998754 56643 5888899999999999999999988 43211 122
Q ss_pred HHHH--HHHhcCCHHHHHHHHHHHHhcCC
Q 012101 398 CLMG--ACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 398 ~l~~--~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+.. .+....+.+...++++.+.+-+.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122233466666666666653
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.12 Score=44.54 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=33.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
|..++...|+++.|..+|..+.+..|.++ ..+.-|+.+..+.|+.++|..+|+.+.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45556666666666666666655444332 34555555566666666666666666554
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.50 E-value=0.5 Score=45.10 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=93.8
Q ss_pred HHHHhCCCchHHHHHHH--HHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 94 RLYTRLEAPKKALDIYI--FMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
....-.++++++.++.+ ++.. .+ .....+.++..+-+.|-.+.|.++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34455677777666554 1111 11 23446667777777777777776654321 23455677888
Q ss_pred hhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 172 FEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 172 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
++.|.++.++.. +...|..|.....+.|+++-|.+.|++.. -+..++-.|.-.|+.+...++.+.. .
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a--~ 400 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA--E 400 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH--H
Confidence 888888887766 45578888888888888888888887764 2455566666677777777776665 4
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID 286 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (471)
..|. ++....++.-.|+.+++.+++.+-.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 4442 4555555556677777776665443
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.41 E-value=0.43 Score=42.85 Aligned_cols=21 Identities=10% Similarity=-0.032 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 012101 401 GACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~ 421 (471)
-++...|....|.+..++..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred HHHHHhcccccHHHHHHHHHH
Confidence 344445555555554444433
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.12 E-value=0.85 Score=43.61 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.+.|+++.|.++.++. ++...|..|.+...+.|+++-|++.|.+.+ -|..|+-.|...|+.+.-.++
T Consensus 329 l~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHH
T ss_pred HhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHH
Confidence 3445555555544333 234456666666666666666666666553 133344445555555555555
Q ss_pred HHHHHhcC
Q 012101 416 AKHLQELE 423 (471)
Q Consensus 416 ~~~~~~~~ 423 (471)
.+.....+
T Consensus 396 ~~~a~~~~ 403 (443)
T PF04053_consen 396 AKIAEERG 403 (443)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 54444433
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.12 Score=47.07 Aligned_cols=67 Identities=12% Similarity=-0.026 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.++..+..+|.+.+++..|++...+..+++|.|.-....-+.+|...|+++.|+..|+++.+..+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 4567788889999999999999999999999999999999999999999999999999998876543
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.92 E-value=1.4 Score=34.56 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK 168 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 168 (471)
-..+|..+...+.+......++.+...+. .+...++.++..+++.+ .....+.+.. ..+.......+..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 44566666666677777777777766652 45666666777666542 2222333321 1222333335555555
Q ss_pred cCChhhHHHHhccC
Q 012101 169 AGDFEKARKVFDEN 182 (471)
Q Consensus 169 ~g~~~~a~~~~~~~ 182 (471)
.+-++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.91 E-value=0.29 Score=36.98 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=46.8
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVV---IWGCLMGACEKFG 407 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~l~~~~~~~~ 407 (471)
....|+.+.|++.|.+.... .+-....||.-..++.-.|+.++|++-+++. |-+ ... .|..=...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 45556666666666666543 1233445666666666666666666665554 211 111 2222223455566
Q ss_pred CHHHHHHHHHHHHhcCC
Q 012101 408 NVKMGEWVAKHLQELEP 424 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~ 424 (471)
+.+.|..-|+..-++|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666666664
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.84 E-value=1.5 Score=34.43 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=59.5
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC
Q 012101 122 YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 201 (471)
.....++..+...+.......+++.+...+ +.+...++.++..|++.+. ++..+.++. ..+......+++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 345567777777788888889999888876 4677788888888887643 444455442 223334455667777777
Q ss_pred ChhHHHHHHHHH
Q 012101 202 RAKEAIDMFIGL 213 (471)
Q Consensus 202 ~~~~a~~~~~~m 213 (471)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 777777777655
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.69 E-value=0.024 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=31.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
..+..+..+|.+.|++++|+++++++.+..+.....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 468889999999999999999999999987765443
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=2.3 Score=36.22 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 012101 296 MIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~ 315 (471)
.|-.+....++..|...++.
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 33344444455555555554
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=94.61 E-value=0.46 Score=44.58 Aligned_cols=160 Identities=10% Similarity=0.081 Sum_probs=104.7
Q ss_pred hhH--HHHHHHHHhCC-----ChhHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcc---------CCcHHHHHHHHHHhH
Q 012101 291 SSW--TSMIVGYAANG-----LANEALDCFHYMRE-SGIRPNH-VTFVGVLSACVH---------GGKVQEGKHFFEMMK 352 (471)
Q Consensus 291 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 352 (471)
..| ..++.+..... ..+.|..+|.+... ..+.|+- ..|..+..++.. ..+..+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554422 35678888998872 2346653 344444333221 234556666666665
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA- 429 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 429 (471)
+.. +-|......+..+..-.|+++.|..+|++. ...||. .+|......+.-.|+.++|.+.+++..++.|.-...
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 431 345555666667777888899999999999 777865 466667777788999999999999999999865432
Q ss_pred -HHHHHHHHHcCCChHHHHHHHHHh
Q 012101 430 -YVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 430 -~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
.-..++.|... ..++|.+++-+-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhhc
Confidence 22344467765 478888876443
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.58 E-value=2.6 Score=35.91 Aligned_cols=196 Identities=16% Similarity=0.080 Sum_probs=83.5
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCH-hhHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKS-KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNV-SSWTSMIV 298 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~ 298 (471)
..+......+...+++..+...+... ... ........+......+...+++..+...+..... ++. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKA--LELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH--HhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 44444455555555555555555544 221 2222333444444445555555555555554443 111 11222222
Q ss_pred -HHHhCCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHH
Q 012101 299 -GYAANGLANEALDCFHYMRESGIRP----NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLG 372 (471)
Q Consensus 299 -~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~ 372 (471)
.+...|+++.+...+.+.... .| ....+......+...++.+.+...+....... .. ....+..+...+.
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHH
Confidence 445555555555555555331 22 12222222222334445555555555554321 11 1334444444444
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 373 RAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
..++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..+
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 555555555555444 32332 22233333333344445555555555444443
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=0.51 Score=40.90 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHh
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
|..++...|+++.|..+|..+.+.
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHh
Confidence 334444444444444444444333
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.34 E-value=4.4 Score=37.64 Aligned_cols=66 Identities=11% Similarity=0.053 Sum_probs=38.5
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP---NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
....+|..+++.+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777777777777776543111 122222233334455677777777766654
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=3.5 Score=36.38 Aligned_cols=145 Identities=11% Similarity=0.022 Sum_probs=82.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.....|++.+|..+|....... +-+...-..+..+|...|+.+.|..++..+.... -.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 3455677777777777666542 2223444556677777777777777777764321 0011111122334444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHcCCChHH
Q 012101 379 EARAMVEGMPMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL--EPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 379 ~A~~~~~~m~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+.+. +..+...-..++..+.-.|.-+.
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 4444444553345 5555666777777788888877766665543 34556666777777766664444
No 255
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.28 E-value=1.7 Score=33.88 Aligned_cols=51 Identities=18% Similarity=0.125 Sum_probs=24.3
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+.|+++.|.+.|+.+..++...|-. ..--.++.+|.+.|++++|...+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4455555555555554443322211 12234445555555555555555554
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.07 E-value=5.3 Score=37.48 Aligned_cols=370 Identities=7% Similarity=-0.077 Sum_probs=193.3
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCC-----------------CchhhHHHHHHHHHh
Q 012101 36 TISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSY-----------------SAAFHWNNIIRLYTR 98 (471)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~li~~~~~ 98 (471)
.+....+..|..+-.. .+-.|. +-+ .+.+..|.+.|...... +|-.-=+..+..+..
T Consensus 67 ~l~~l~~~~~~s~~l~-LF~~L~--~Y~---~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe 140 (549)
T PF07079_consen 67 QLMELRQQFGKSAYLP-LFKALV--AYK---QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIE 140 (549)
T ss_pred HHHHHHHhcCCchHHH-HHHHHH--HHH---hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHh
Confidence 3344555666555555 555554 233 45677777766543221 122222456788899
Q ss_pred CCCchHHHHHHHHHHHCCC----CCCcchHHHHHHHHhccCCc---------------hHHHHHHHHHHHh------CCC
Q 012101 99 LEAPKKALDIYIFMSRAGV----LPDCYTLPIVLKASCQLFAL---------------EIGRQLHSLAVRL------GLE 153 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~---------------~~a~~~~~~~~~~------~~~ 153 (471)
.|++.++..++++|...=. ..+..+|+.++-.+++.--. +.+.-...++... .+-
T Consensus 141 ~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 141 TGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFI 220 (549)
T ss_pred cCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhC
Confidence 9999999999999866433 47888998876666554111 1111111111110 011
Q ss_pred CCcchHHHHHHHHHhcC-----ChhhHHHHhccC-CCCCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC----CH
Q 012101 154 SNEFCESGFISLYSKAG-----DFEKARKVFDEN-PERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEP----DD 222 (471)
Q Consensus 154 ~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~-~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~ 222 (471)
|.......++....-.. -+=.+.+.|+.- ..|+-. .-..+...+.+ +.+++..+-+.+....+.+ =.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11111111211111000 011111122110 011111 22333333433 6677777766665543222 23
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHH-------HHHHHHHHhc----CChHHHHHHHHhcCCCCHh
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLML-------NSLIDMYGKC----GRMDLAYKVFWEIDQPNVS 291 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 291 (471)
.+|..++....+.++...|.+.+.-+.. ..|+..+- ..+-+..+.. -+..+=..+++.+..-|+.
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~----ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD 374 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKI----LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID 374 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh----cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc
Confidence 5788888888999999999998886622 23332221 1222333311 1223334445544443321
Q ss_pred ---hHHHHH---HHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHH----HHHhcc---CCcHHHHHHHHHHhHHhcCC
Q 012101 292 ---SWTSMI---VGYAANGL-ANEALDCFHYMRESGIRPNHVTFVGV----LSACVH---GGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 292 ---~~~~li---~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~---~~~~~~a~~~~~~~~~~~~~ 357 (471)
.-..|+ .-+-+.|. -++|+++++...+-. +-|..+-+.+ =.+|.+ ...+.+-.++-+-+ +..|+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi-~e~gl 452 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI-TEVGL 452 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HhcCC
Confidence 112222 23445565 788999998887641 2233332222 223322 23344444444444 33487
Q ss_pred CCCh----hHHHHHHHH--HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 358 EPRF----AHYGCMVDL--LGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 358 ~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
.|-. ..-|.|.++ +...|++.++.-.-.-. .+.|+..+|..+.-+.....++++|..++..+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7643 334444443 45678888887665555 88999999999999999999999999998764
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=10 Score=40.20 Aligned_cols=53 Identities=8% Similarity=-0.008 Sum_probs=26.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGMPMKANVVI--WGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
-+.+|..+|++.+|+.+-.++...-|... -..|..-+...++.-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34455556666666666555532223322 134555555566655555555443
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=93.90 E-value=0.4 Score=38.21 Aligned_cols=82 Identities=11% Similarity=-0.016 Sum_probs=39.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc---CCCCCcchHHHHHHHHHcCCChhHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE---NPERKLGSWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~ 209 (471)
..|++++|..+|.-+...+ +-+...+..|..++-..+++++|...|.. +...|...+-....++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3455555555555554433 22333344444455555555555555533 2223333444445555555555555555
Q ss_pred HHHHHH
Q 012101 210 FIGLKK 215 (471)
Q Consensus 210 ~~~m~~ 215 (471)
|+...+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 555544
No 259
>PRK09687 putative lyase; Provisional
Probab=93.69 E-value=5 Score=35.92 Aligned_cols=135 Identities=7% Similarity=-0.071 Sum_probs=56.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANG-LANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
+..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ +...+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 33444444555555554333333333333344443333444444332 12344444444442 334445555555555
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGAC 403 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 403 (471)
+.++. .+...+-...+. ++ .....+.+++..|.. +|...+..+ .-.||..+-...+.+|
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 55553 233332222221 11 122444555555554 344444444 3334444444444333
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.58 E-value=0.27 Score=27.28 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.|..+..++...|++++|.+.+++..++.|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666677777777777776666654
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.58 E-value=5.3 Score=40.40 Aligned_cols=177 Identities=12% Similarity=0.086 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHhhHHHHHHHH
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD--TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVSSWTSMIVGY 300 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~ 300 (471)
+...-+....+..-++.|..+-+.- +..++ ........+.+.+.|++++|...|-+-.. .++ ..+|.-|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHh
Confidence 3445566667777777777765432 32222 22333445556678889888887766543 121 1245666
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC-CChhHHHHHHHHHHhcCCHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE-PRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~ 379 (471)
....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... . |.. -| ....+..+.+.+-.++
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRKSNYLDE 481 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHHhChHHH
Confidence 6777777888888888888865 34444678888999888888877777663 2 221 12 3446677777788888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 380 ARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 380 A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
|..+-...+. +......++ -..+++++|.++++.+
T Consensus 482 a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 8777776654 344444443 4567888888887654
No 262
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.56 E-value=0.72 Score=36.00 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=46.2
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 362 AHYGCMVDLL---GRAGLLEEARAMVEGM-PMKANV---VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 362 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
.+.+.||+.. ...++++++..+++.| -..|+. .++.. ..+...|++.+|.++|+++.+..+..+..-..+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 3444555433 3477888888888877 344433 33333 3456778888888888887776654443333444
Q ss_pred HHHHcCCC
Q 012101 435 NIYASRGL 442 (471)
Q Consensus 435 ~~~~~~g~ 442 (471)
.++.-.|+
T Consensus 86 ~CL~al~D 93 (153)
T TIGR02561 86 LCLNAKGD 93 (153)
T ss_pred HHHHhcCC
Confidence 44444444
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.49 E-value=7.9 Score=37.66 Aligned_cols=125 Identities=14% Similarity=0.221 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY 166 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 166 (471)
.|..+|.---.....+.+..++..+... .|-.. -|.-....=.+.|..+.+.++|++.+. |++.+...|...+..+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 4555554444444444555555555432 23322 122223333455666666666666655 4555555555554433
Q ss_pred H-hcCChhhHHHHhccCCC---C---CcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 167 S-KAGDFEKARKVFDENPE---R---KLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 167 ~-~~g~~~~a~~~~~~~~~---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
. ..|+.+.....|+.... . ....|...|.--...+++.....+|++..+
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 3 23455555555554332 1 223466666666666677777777776664
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.41 E-value=0.21 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+|..+..+|...|++++|+..|++..++.|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666666777777777777777777766653
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.23 E-value=4.4 Score=33.96 Aligned_cols=159 Identities=13% Similarity=0.112 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..||.+.--+...|+++.|.+.|+...+....-+-...|.-|. +-..|++.-|.+-+-..-+...-.|-...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 4566666666667777777777776666532222222222222 23346666666655555443222232223322221
Q ss_pred HHhcCCHHHHHHHH-HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHcCC
Q 012101 371 LGRAGLLEEARAMV-EGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS-------DGAYVVLSNIYASRG 441 (471)
Q Consensus 371 ~~~~g~~~~A~~~~-~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 441 (471)
..-++.+|..-+ ++. +. |..-|...|-.+.- |++. .+.+++++..-..++ ..+|.-|+.-|...|
T Consensus 178 --~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 233455554433 333 32 22222222222111 1111 122333333222221 135666777777777
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
+.++|..+|+-....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 7777777777665443
No 266
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.22 E-value=8.7 Score=37.35 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=91.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCC-CCCCc-----chHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcch
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAG-VLPDC-----YTLPIVLKASCQ----LFALEIGRQLHSLAVRLGLESNEFC 158 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 158 (471)
...++....-.||-+.+++++.+..+.+ +.-.. -.|+.++..++. ..+.+.+.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 4455666666788888888887765532 22111 123344433332 34557788888887764 345444
Q ss_pred HHH-HHHHHHhcCChhhHHHHhccCCCC-------CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 012101 159 ESG-FISLYSKAGDFEKARKVFDENPER-------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTS 230 (471)
Q Consensus 159 ~~~-ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 230 (471)
|.. -.+.+...|++++|.+.|+..... ....+-.+.-.+.-..+|++|.+.|..+.+.. ..+..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 432 235566678888888888764321 11234555556667778888888888887753 334444544444
Q ss_pred HH-cCcCCH-------HHHHHHHHHH
Q 012101 231 AC-GSLGDL-------ELALQVHKYV 248 (471)
Q Consensus 231 ~~-~~~~~~-------~~a~~~~~~~ 248 (471)
+| ...++. ++|.+++.++
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHH
Confidence 33 345555 6666776665
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.17 E-value=1.8 Score=34.75 Aligned_cols=21 Identities=29% Similarity=0.093 Sum_probs=8.3
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 012101 265 LIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~ 285 (471)
|.-+-.+.|++.+|.+.|..+
T Consensus 173 LglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HhHHHHhccchHHHHHHHHHH
Confidence 333333444444444444333
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.12 E-value=14 Score=39.28 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHHhcC--ChhhHHHHhccCC
Q 012101 153 ESNEFCESGFISLYSKAG--DFEKARKVFDENP 183 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~ 183 (471)
.|+ .....+|.+|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 45566778888887 6777777766655
No 269
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.97 E-value=5.1 Score=33.97 Aligned_cols=196 Identities=17% Similarity=0.071 Sum_probs=101.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcC-----CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEID-----QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
...+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3445555555666666666665555443 13334444555555555666666666666655432221 11111112
Q ss_pred -HhccCCcHHHHHHHHHHhHHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 012101 334 -ACVHGGKVQEGKHFFEMMKNVYQI--EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN--VVIWGCLMGACEKFG 407 (471)
Q Consensus 334 -~~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~l~~~~~~~~ 407 (471)
.+...|+++.|...+...... .. ......+......+...++.+.+...+... ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 455666666666666666321 10 012223333333355566666666666665 33333 455555666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+++.+...+.......+.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543333444444444555566666666555443
No 270
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.94 E-value=3.3 Score=31.67 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
...+......|+-|+-.++++++.+. -.+++.....+..+|.+.|+..++.+++.++.+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34455666677777777777766543 2556666666677777777777777777776554
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.92 E-value=0.2 Score=28.55 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=18.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888888888888888888743
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=92.85 E-value=7.7 Score=36.78 Aligned_cols=152 Identities=11% Similarity=0.028 Sum_probs=100.7
Q ss_pred HHHHHHHHhc-----CChHHHHHHHHhcC---CCC---HhhHHHHHHHHHhC---------CChhHHHHHHHHHHHcCCC
Q 012101 263 NSLIDMYGKC-----GRMDLAYKVFWEID---QPN---VSSWTSMIVGYAAN---------GLANEALDCFHYMRESGIR 322 (471)
Q Consensus 263 ~~l~~~~~~~-----g~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~ 322 (471)
..++.+.... ...+.|..+|.+.. +.| ...|..+..++... ....+|.++-++..+.+ +
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-T 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-C
Confidence 4455554432 13567888999887 433 45666665555432 23456777777777765 4
Q ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH---HHH
Q 012101 323 PNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV---IWG 397 (471)
Q Consensus 323 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~---~~~ 397 (471)
-|......+..+....++++.|...|++... +.||.. .|........-.|+.++|.+.+++. ...|... ...
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 5677777777777778889999999999974 467653 4555555667799999999999995 6666543 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 012101 398 CLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
..+..|+.. ..+.|..++-+-
T Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 413 ECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHcCC-chhhhHHHHhhc
Confidence 344456554 567777776543
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.70 E-value=1 Score=35.80 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=52.8
Q ss_pred hHHHHHHHHH---HhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 362 AHYGCMVDLL---GRAGLLEEARAMVEGM-PMKANVVIWGCL-MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 362 ~~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+.+.||..+ .+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++|+.+.+..+..+..-..+..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3455555543 4678889999998888 455554433322 2456788899999999999877776655444455555
Q ss_pred HHcCCC
Q 012101 437 YASRGL 442 (471)
Q Consensus 437 ~~~~g~ 442 (471)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 555554
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.52 E-value=4.1 Score=32.93 Aligned_cols=130 Identities=9% Similarity=0.046 Sum_probs=65.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC--ChhhHHHHhccCCC
Q 012101 107 DIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG--DFEKARKVFDENPE 184 (471)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~ 184 (471)
+.+..+.+.|++|+...+..+++.+.+.|.+....+ ++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 444555566777777777777777777776554433 334454444443332222221111 1233444444433
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
..+..++..+...|++-+|+++.+...... .+ ....++.+..+.+|...-..+++-.
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~---~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SV---PARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cC---CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 134556667777777777777776642211 11 2233455555555554444444433
No 275
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.50 E-value=0.52 Score=38.67 Aligned_cols=99 Identities=13% Similarity=0.022 Sum_probs=55.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFGNV 409 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~~~ 409 (471)
+.+.|++++|..-|....+...-.+. ...|..-.-++.+.+.++.|.+-.... .+.|+. ..+..=..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 56677788887777777654211111 122333334556666666666655544 444532 2333334566667777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHH
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
+.|+.-++++.+..|.....-...
T Consensus 185 eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHH
Confidence 777777777777776554333333
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.44 E-value=6 Score=37.69 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+..+..+.|+.++|.+.+++| ...| +......|+.++...+.+.++..++.+..+..
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 4555566677777777777776 2222 22355667777777777777777777765443
No 277
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.44 E-value=0.079 Score=41.97 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHH
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI 207 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 207 (471)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444444455555555555555444344445555555555555555555555553222 11223344444444444444
Q ss_pred HHHHH
Q 012101 208 DMFIG 212 (471)
Q Consensus 208 ~~~~~ 212 (471)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44433
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.34 E-value=9.4 Score=35.44 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
...+|..+...+.+.|.++.|...+.++.+.++. .+......+..+...|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888888899999999999888888875521 3445666777888888889999888887763
No 279
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=14 Score=37.23 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHH-HhC----------CCCCCHHHHHHHHHHHHhcCCHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMV-EGM----------PMKANVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~-~~m----------~~~p~~~~~~~l~~~~~~~~~~~~a 412 (471)
|.-++..+++.|+..+|+.+. +++ ..+-|...|..||..+...-.+-.+
T Consensus 650 ~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~ 709 (846)
T KOG2066|consen 650 YEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKA 709 (846)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHH
Confidence 444555555666555555542 221 2345777888888777665544433
No 280
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.20 E-value=5.2 Score=36.07 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--CC----cHHHHHHHHHHhHHhcCCC--CChhHHHHHHHHHHhcCCH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVH--GG----KVQEGKHFFEMMKNVYQIE--PRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~ 377 (471)
+++...+++.|.+.|+.-+..+|.+....... .. ...+|..+++.|++.|.+- ++...+..++-. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788888888888887777653333222 22 3567889999998876653 333444444332 34443
Q ss_pred H----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 378 E----EARAMVEGM---PMKA-NV-VIWGCLMGACEKFGN--VKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 378 ~----~A~~~~~~m---~~~p-~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
+ .++..++.+ ++.. |. .....++..+-...+ +.++.++++.+.+.+..-...+...+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3 344455554 4443 33 344444433332222 447788888888877443333333333443
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.08 E-value=0.77 Score=40.43 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++..++..+...|+.+.+.+.++++ ...| +...|..++.+|.+.|+...|+..++++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45677888888888888888888888 5555 778888888888888888888888888876
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.07 E-value=0.38 Score=27.31 Aligned_cols=28 Identities=11% Similarity=-0.046 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
+|..|...|.+.|++++|++++++...+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678888999999999999999986543
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.01 E-value=7.5 Score=33.63 Aligned_cols=62 Identities=18% Similarity=0.010 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+.+.|.+.|.+..|..-+++| .--| ....+-.+..+|...|-.++|...-+-+....|+++
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 3456788888888888777777 1122 234666777888888888888887766665556544
No 284
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.75 E-value=9.6 Score=34.72 Aligned_cols=126 Identities=15% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH---hcCCCCChhHHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESG-----IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN---VYQIEPRFAHYGC 366 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p~~~~~~~ 366 (471)
++..++...+.++++++.|+...+-- .......+..|-..|.+..++++|.-+..+..+ .+++..-..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555566666666666544321 111223556666666666666666555444322 1222211112222
Q ss_pred -----HHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 367 -----MVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 367 -----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
|.-++...|.+.+|.+..++. |.+| .......+.+.|...|+.+.|..-++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223455556555555554443 3333 22344556666777777776665555543
No 285
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.64 E-value=0.61 Score=35.33 Aligned_cols=91 Identities=14% Similarity=0.008 Sum_probs=75.9
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCc---hHHHHHHHHHcCCC
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-PWSDG---AYVVLSNIYASRGL 442 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~ 442 (471)
-++...|+.+.|++.|... .+-| ....||.=.+++.-.|+.++|..-+++..++. +.... .|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3677899999999999988 4444 67899999999999999999999999999875 43322 46667778999999
Q ss_pred hHHHHHHHHHhhcCCCc
Q 012101 443 WEEVERIRAVMKHRNLA 459 (471)
Q Consensus 443 ~~~A~~~~~~m~~~~~~ 459 (471)
-+.|..=|+...+-|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 99999999998887653
No 286
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.53 E-value=5.2 Score=36.05 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC--cC----CHHHHHHHHHHH
Q 012101 203 AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS--LG----DLELALQVHKYV 248 (471)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~ 248 (471)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....+..+|+.|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 45567788889999998888877764443332 22 245567777777
No 287
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.46 E-value=10 Score=33.98 Aligned_cols=158 Identities=9% Similarity=-0.002 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 292 SWTSMIVGYAANGLAN---EALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++..|..... -....+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHHH
Confidence 4556667777666543 455566666544211 234454556666667788888888888866422 1223344444
Q ss_pred HHH---HhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHhcC--CCCCch
Q 012101 369 DLL---GRAGLLEEARAMVEGM---PMKANVV-IWGC-LM---GACEKFGN------VKMGEWVAKHLQELE--PWSDGA 429 (471)
Q Consensus 369 ~~~---~~~g~~~~A~~~~~~m---~~~p~~~-~~~~-l~---~~~~~~~~------~~~a~~~~~~~~~~~--~~~~~~ 429 (471)
..+ .... ...|...+..+ ...|... .... ++ ....+.++ ++....++..+.+.. +.++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 443 3333 33444444444 3333322 1111 11 11122212 444455555443322 222222
Q ss_pred ---HHH----HHHHHHcCCChHHHHHHHHHh
Q 012101 430 ---YVV----LSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 430 ---~~~----l~~~~~~~g~~~~A~~~~~~m 453 (471)
..+ -+....+.++|++|.++++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 112 233467889999999998854
No 288
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.30 E-value=18 Score=36.62 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc-------hHHHHHHHHHHHhC
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL-------EIGRQLHSLAVRLG 151 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~ 151 (471)
..| .+|--|.|.|++++|.++..+.... .......+...+..+....+- +....-|++..+..
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 344 4677789999999999999665543 455677888888888775332 45555666655543
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.28 E-value=6.8 Score=31.68 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=52.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHh
Q 012101 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWE 284 (471)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~ 284 (471)
+++++.+.+.|++|+...+..++..+.+.|++.....+ +..++-+|.......+-.+.... -..-|.+.+.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql------lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL------LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH------HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 34555556667777777777777777777776555444 33344444433333332221111 02223333333
Q ss_pred cCCCCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 285 IDQPNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 285 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
+. ..+..++..+...|++-+|.++.+..
T Consensus 88 L~----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LG----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hh----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 32 23444555666677777777766553
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.28 E-value=19 Score=36.77 Aligned_cols=174 Identities=18% Similarity=0.070 Sum_probs=105.3
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHH----HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIR----LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA 130 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (471)
..-|+.+.+ ..-+.-|..+-+.....+ ..-..+.. -+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~k---K~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFK---KNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 344555555 455777777766655322 23333333 345679999998888776532 222 235566
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDM 209 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~ 209 (471)
+.....+..-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+........ -....+..+.+.+-.++|.-+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 66666667777778888888854 3344467889999999999999888877732222 245566666666666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 210 FIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 210 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
-..... .......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 444432 222222322 2456667776666544
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.26 E-value=3.3 Score=29.93 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=47.6
Q ss_pred HHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 297 IVGYAANGL--ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 297 i~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
-..|....+ .-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|-. ...|..+++
T Consensus 15 y~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 15 YEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 334444333 33566677777777889999999999999999999999999999997765533 336766654
No 292
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=2.8 Score=37.53 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=88.0
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH----HHHHHhcCCHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCL----MGACEKFGNVK 410 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l----~~~~~~~~~~~ 410 (471)
-.|...+|-..++++..++ +.|...+..--++|.-.|+.+.-...+++. .-.||...|..+ .-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3577778888888887753 566667777778899999999988888888 335666444333 23445889999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+|++.-++..++++.+.-....+.-++.-.|+.+++.+...+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999877666667777788889999999887653
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.14 E-value=0.31 Score=38.55 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=48.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+|..+.+.+.++.....++.+...+...+....+.++..|++.++.+....+++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5666666677777777777777655555566667777777777666666666551 111333445555555555
Q ss_pred hhhHHHHhccC
Q 012101 172 FEKARKVFDEN 182 (471)
Q Consensus 172 ~~~a~~~~~~~ 182 (471)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 294
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.10 E-value=1.5 Score=36.02 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-------
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD--CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF------- 157 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 157 (471)
.++..+...|.+.|+.+.|++.|.++.+....+. ...+..+|+.....+++..+.....+....--.....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999988654443 4556778888888899998888888776532221111
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
+|..|. +...+++..|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 122221 22346677766666443
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.02 E-value=3.4 Score=34.27 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAY 279 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 279 (471)
.-+.|.+.|-.+...+.--++.....+.. |....+.+++..++....+...+- .+|+.++.+|.+.|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45677888878877765544444444444 444677888888887775444444 778888888888888888888774
No 296
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.67 E-value=38 Score=39.18 Aligned_cols=313 Identities=12% Similarity=0.009 Sum_probs=163.6
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCC--CCCcchHHHHHHHHHhcCChhhHHHHhcc-CCCCCcchHHHHHHHHHcCCCh
Q 012101 127 VLKASCQLFALEIGRQLHSLAVRLGL--ESNEFCESGFISLYSKAGDFEKARKVFDE-NPERKLGSWNAIIAGLSQDGRA 203 (471)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 203 (471)
+..+--+.+.+..|...+++-..... .-....|..+...|+.-++.|...-+... ...+ +...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 33455566777777777777311000 01122344455588888888887777653 3332 233445556677999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS-LIDMYGKCGRMDLAYKVF 282 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~ 282 (471)
..|...|+.+.+.+ ++...+++-++......+.++.+....+.. .. ...+....++. =+.+--+.++++..+...
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~--~~-~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL--II-NRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch--hh-ccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999998764 334667787777777778777776655443 11 12222222222 233445667777666655
Q ss_pred HhcCCCCHhhHHHH--HHHHHhC--CChhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHhccCCcHHHHHHHHH
Q 012101 283 WEIDQPNVSSWTSM--IVGYAAN--GLANEALDCFHYMRESGIRP---------NHVTFVGVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 283 ~~~~~~~~~~~~~l--i~~~~~~--~~~~~a~~~~~~m~~~~~~p---------~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (471)
. ..+..+|... .....+. .+.-.-.+.++-+++.-+.| =...|..++....-. +.+.-.+
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~--- 1614 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIE--- 1614 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHH---
Confidence 5 3444455443 2222222 12212223333333321111 011222232221110 0111111
Q ss_pred HhHHhcCCCCChh------HHHHHH---HHHHhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 012101 350 MMKNVYQIEPRFA------HYGCMV---DLLGRAGLLEEARA-MVEGMPMKA-----NVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 350 ~~~~~~~~~p~~~------~~~~li---~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
...+..++.. .|..-+ +.+.+...+=-|.+ .+......| -..+|-...+...+.|.++.|..
T Consensus 1615 ---~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1615 ---ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred ---HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1112222221 122111 11222111111111 111111122 23578888888999999999988
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 415 VAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+-.+.+.. .+..+.-.+..+...|+...|+.++++..+...
T Consensus 1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 887777766 356788888999999999999999998876554
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.63 E-value=3.2 Score=36.68 Aligned_cols=56 Identities=18% Similarity=0.360 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
++..++..+...|+++.+...++++.. -+...|..++.+|.+.|+...|+..|+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 344444444444444444444444433 22334444444444444444444444444
No 298
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.61 E-value=16 Score=34.92 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=26.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHhccCCcHHHHHHHHHHh
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIR-PNHVTFVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
+..+.-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444555555555555555433111 12223444555555555555555555554
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.33 E-value=24 Score=36.37 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=99.8
Q ss_pred HhcCChHHHHHHHHhcCC----CCH-------hhHHHHHHH-HHhCCChhHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ----PNV-------SSWTSMIVG-YAANGLANEALDCFHYMRES----GIRPNHVTFVGVLS 333 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~----~~~-------~~~~~li~~-~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~ 333 (471)
....++++|..+..++.. |+. ..|+.+-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456778888877766542 222 244444332 23467788888877766554 12334455566666
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCChhH---HHHHHH--HHHhcCCHH--HHHHHHHhC-----CCCC----CHHHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPRFAH---YGCMVD--LLGRAGLLE--EARAMVEGM-----PMKA----NVVIWG 397 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~li~--~~~~~g~~~--~A~~~~~~m-----~~~p----~~~~~~ 397 (471)
+..-.|++++|..+.....+. .-.-+... |..+.. .+...|... +.+..|... +-+| -..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 677778888888777666433 11223322 333322 344556322 222223322 2222 223455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCC
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELE----PWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPA 463 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 463 (471)
.++.++.+ ++.+..-.....+.+ +.+.. .+..|+..+...|+.++|...+.++..-.....+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 55555555 444443333333322 22211 22356777788888888888888876654443333
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.25 E-value=8.1 Score=30.85 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHhC
Q 012101 371 LGRAGLLEEARAMVEGM 387 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m 387 (471)
+.+.|++.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 34555555555555555
No 301
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.22 E-value=5.9 Score=32.58 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD--VTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+..+...|.+.|+.++|++.|.++.+....+.. ..+..+|....-.+++..+.....+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444444455555555555555554443222221 22334444444445555554444443
No 302
>PHA02875 ankyrin repeat protein; Provisional
Probab=90.13 E-value=18 Score=34.59 Aligned_cols=54 Identities=7% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HHHhcCChHHHHHHHHhcCCCCHh---hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPNVS---SWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
..+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+-+.+.|..++.
T Consensus 174 ~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 174 IAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 344556666666555544433321 1123333334555543 33444456666553
No 303
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.08 E-value=23 Score=35.88 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=93.1
Q ss_pred hcCChHHHHHHHHhcCC-----CC-----HhhHHHHHH--HHHhCCChhHHHHHHH--------HHHHcCCCCCHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ-----PN-----VSSWTSMIV--GYAANGLANEALDCFH--------YMRESGIRPNHVTFVG 330 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~--~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 330 (471)
-.+++..|...+..+.+ |+ ...+..++. .+...|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46788888888887764 22 122333333 3345699999999997 4444555545444433
Q ss_pred HH--HHh--ccCCcHHH--HHHHHHHhHHhcCCCCC--hhHHHHH-HHHHHhcC---------CHHHHHHHH-HhCCCCC
Q 012101 331 VL--SAC--VHGGKVQE--GKHFFEMMKNVYQIEPR--FAHYGCM-VDLLGRAG---------LLEEARAMV-EGMPMKA 391 (471)
Q Consensus 331 ll--~~~--~~~~~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l-i~~~~~~g---------~~~~A~~~~-~~m~~~p 391 (471)
+= ..+ ......++ +.++++.+.....-.|+ ..++..+ +.++.... .+.++++.. +..+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 11 111 12222333 77777777543222333 2333333 33332111 223344444 3332111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHH-----HHHHHHHcCCChHHHHHHHHHhh
Q 012101 392 -NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW----SDGAYV-----VLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 392 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
-..+++.+...+. .|+..+.............. ....|. .+.+.|...|+.++|.....+..
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1223343333344 68887766655554433221 122442 44555888999999999887654
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.03 E-value=0.77 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+|..+...|...|++++|...|++..++.|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555666666666666666666666554
No 305
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=15 Score=32.58 Aligned_cols=117 Identities=9% Similarity=0.038 Sum_probs=66.4
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CH--hhHHHHHHHHHhCCCh
Q 012101 231 ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQP--NV--SSWTSMIVGYAANGLA 306 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~li~~~~~~~~~ 306 (471)
.....|+...|..+|+.. ...... +...--.+..+|...|+.+.|..++..+... +. .....-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~a--l~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQA--LQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHH--HHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 455678888888888877 333222 2445566778888888888888888887641 11 1111223333344443
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 307 NEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433333333332 34 444444555666677777777665544433
No 306
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.00 E-value=6.7 Score=37.05 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=67.6
Q ss_pred HHhCCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 300 YAANGLANEALD-CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 300 ~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
-...|+...|-+ ++..++...-.|+.......| +...|+++.+.+.+...... +.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHH
Confidence 344555555443 344444443345544444443 34456777777666666432 2334445566666666677777
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 379 EARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 379 ~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
+|..+-+.| +.. -+..............|-++++.-.++++..++|+...-+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 777766666 211 1333333333344455666777777777766665544433
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=5.2 Score=35.58 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=68.1
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CC------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PN------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.|.+....+...++..-....++++++..+-++.. |+ ...+ +.++ .+..-++++++.++..=+.-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccch
Confidence 34445555566666666667778888877766653 22 1111 1222 23345677888888887888999999
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
++++.+++.+.+.+++..|.++.-.|..+
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999988888777666544
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.58 E-value=0.7 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=16.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHH
Q 012101 429 AYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44566777777777777777665
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.50 E-value=0.61 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=25.4
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..+..++.+|.+.|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3577899999999999999999999876543
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.36 E-value=7.5 Score=27.88 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466777777888888999999999999999999999999999988755433 4445665554
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.23 E-value=8.8 Score=31.69 Aligned_cols=88 Identities=10% Similarity=-0.054 Sum_probs=40.0
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 369 DLLGRAGLLEEARAMVEGMPMKANVVIWG-----CLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
..+..+|++++|..-++..--.|....+. .|.+.....|.+++|...++...+.+. .+.....-++++...|+-
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~k 175 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCch
Confidence 34455555555555555441112112221 122344455555555555544333221 111223345555566666
Q ss_pred HHHHHHHHHhhcCC
Q 012101 444 EEVERIRAVMKHRN 457 (471)
Q Consensus 444 ~~A~~~~~~m~~~~ 457 (471)
++|+.-|+...+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 66666655555544
No 312
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.75 E-value=37 Score=35.12 Aligned_cols=215 Identities=11% Similarity=-0.014 Sum_probs=120.0
Q ss_pred cCcCCHHHHHHHHHHHHHhhcCCCCChh-------HHHHHH-HHHHhcCChHHHHHHHHhcCC--------CCHhhHHHH
Q 012101 233 GSLGDLELALQVHKYVFQVKSKQKSDTL-------MLNSLI-DMYGKCGRMDLAYKVFWEIDQ--------PNVSSWTSM 296 (471)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 296 (471)
....++.+|..+..+. ...-..|+.. .++++- ......|++++|.++-+.... ..+..+..+
T Consensus 426 ~s~~r~~ea~~li~~l--~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 426 ASQHRLAEAETLIARL--EHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHccChHHHHHHHHHH--HHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4567888999888887 3332222221 223221 223456888888877765542 455667777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH---HHH--HHhccCCc--HHHHHHHHHHhHHhcCCCC-----ChhHH
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFV---GVL--SACVHGGK--VQEGKHFFEMMKNVYQIEP-----RFAHY 364 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~p-----~~~~~ 364 (471)
..+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+ .+.....|......+.... -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999999888766542233333222 222 22445563 3333444544443322111 22334
Q ss_pred HHHHHHHHhcCCHHHHHHH----HHhC-CCCCC--HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHH
Q 012101 365 GCMVDLLGRAGLLEEARAM----VEGM-PMKAN--VV--IWGCLMGACEKFGNVKMGEWVAKHLQELEPWS--DGAYVVL 433 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~----~~~m-~~~p~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l 433 (471)
..+..++.+ ++.+..- ++-. ...|. .. .+..|+......|+.++|...+.++..+...+ ...|...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444455544 3333332 2222 12222 22 22367788889999999999999998765332 2223322
Q ss_pred -----HHHHHcCCChHHHHHHHHH
Q 012101 434 -----SNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 434 -----~~~~~~~g~~~~A~~~~~~ 452 (471)
+......|+..+|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 2223467888888887766
No 313
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.69 E-value=3.3 Score=29.62 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444555555566777777777777777777777777777765
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.62 E-value=19 Score=31.81 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++....+|...|.+.+|.++.++....+|-+...+-.++..|...|+--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556789999999999999999999999988899999999999999777777666664
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.51 E-value=1 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=25.9
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 428 GAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..|..++.+|...|++++|++.+++..+.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3688899999999999999999999877543
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.86 E-value=6.4 Score=32.74 Aligned_cols=73 Identities=19% Similarity=0.090 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhC---CCCCcchHHHHHHHHHhcCChhhHH
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLG---LESNEFCESGFISLYSKAGDFEKAR 176 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~ 176 (471)
+.|.+.|-.+...+.--++.....+...|. ..|.+++.+++...++.. -.+|+..+.+|...|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 677777777777665545555555555555 447888888887777642 2556777777888888877777663
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.74 E-value=1.7 Score=23.59 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=13.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+..++.+.|++++|.+.|+++.+..|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444455555555555555555444
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.73 E-value=5.7 Score=35.35 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESG---IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...++..-....+++.+..++-+++..- ..|+... ...++.|.+ -+.++++.++..-. .+|+-||..+++.++
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 33444444444556666666666665431 1122111 112222221 24556666655552 346667777777777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 012101 369 DLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m 387 (471)
+.+.+.+++.+|.++.-.|
T Consensus 143 D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHhcccHHHHHHHHHHH
Confidence 7777777766666655554
No 319
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.58 E-value=32 Score=33.17 Aligned_cols=158 Identities=13% Similarity=0.098 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
.-+++..+..+-.+.-.+.+-.+|.. .+...|..++++|..+ ..++-..+|+++.+.. -|...+..-+..+...+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~yEki 145 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHHHHh
Confidence 33444444444444444444444432 3344444555555554 3445555555555432 22222222222222224
Q ss_pred cHHHHHHHHHHhHHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCH
Q 012101 340 KVQEGKHFFEMMKNVYQIEPR------FAHYGCMVDLLGRAGLLEEARAMVEGM----PMKANVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~l~~~~~~~~~~ 409 (471)
+.+.+..+|.++..+ +-|. ...|..++..- ..+.+..+.+.... |...-.+.+..+-.-|....++
T Consensus 146 k~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 146 KKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred chhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 555555555554432 1121 11233322211 22333344443333 2233334444444555555666
Q ss_pred HHHHHHHHHHHhcCCCC
Q 012101 410 KMGEWVAKHLQELEPWS 426 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~ 426 (471)
++|++++..+.+.+..+
T Consensus 222 ~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 222 TEAIRILKHILEHDEKD 238 (711)
T ss_pred HHHHHHHHHHhhhcchh
Confidence 66666666555544333
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.58 E-value=6.8 Score=30.75 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=48.0
Q ss_pred HHHHHHHHHH---hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 325 HVTFVGVLSA---CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 325 ~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
....+.|++. -...++.+.+..++..+.-...-.+...++. ...+...|++++|..+|++. .-.+....-..|+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 3444555543 3457899999999999974322223333433 34567899999999999999 3333433333444
Q ss_pred HHHH
Q 012101 401 GACE 404 (471)
Q Consensus 401 ~~~~ 404 (471)
..|.
T Consensus 85 A~CL 88 (153)
T TIGR02561 85 ALCL 88 (153)
T ss_pred HHHH
Confidence 3333
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.47 E-value=10 Score=27.41 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012101 137 LEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC 216 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 216 (471)
.++|.-+-+.+...+-. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 36666666666554311 22233334466778899999999999998889888877754 4667777777777778777
Q ss_pred CCCCCHHHHHH
Q 012101 217 GFEPDDVTMVS 227 (471)
Q Consensus 217 g~~p~~~~~~~ 227 (471)
| .|....|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 565555543
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.43 E-value=1.3 Score=25.83 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=17.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+++.|+.+|...|++++|.+++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456677777777777777777776643
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=19 Score=35.30 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.|+.+.|.++..+.. +..-|..|-++....+++..|.+.|..... |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34555555555544322 344555666666666666666666555521 33444455555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
..+-.... .....|...-+|...|+++++.+++.+
T Consensus 712 ~~la~~~~---~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAK---KQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHH---hhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 33222220 000112233345566666666666544
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.08 E-value=5.4 Score=33.51 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
.+.-++.+.+.+...+++...++-++.. +.|..+-..+++.+|-.|+|++|..-++-.-+......+...+|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4556677788888888888887776663 4456667788888888999999888777664444445555666666664
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=9.3 Score=37.29 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=78.9
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
-.|+++.|..++..++++ .-+.++..+.+.|-.++|+++ .+|.... .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 346677776666655532 234455555666666666654 2332211 1223356677777666544
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.|.. |
T Consensus 663 ~--------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N--- 725 (794)
T KOG0276|consen 663 A--------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N--- 725 (794)
T ss_pred h--------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhccc-c---
Confidence 3 134456677777777777777776665543 2444455555555555444444444444421 1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHh
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~ 351 (471)
...-+|...|+++++.+++..-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 1222334456666666655544
No 326
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.92 E-value=1.1 Score=25.07 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCCcchHHHHHHHHHhcCChhhHH
Q 012101 153 ESNEFCESGFISLYSKAGDFEKAR 176 (471)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~ 176 (471)
|-+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 444556666666666666666654
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.66 E-value=2.2 Score=24.70 Aligned_cols=29 Identities=14% Similarity=0.010 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+++.+...|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788888999999999999999988875
No 328
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.36 E-value=21 Score=30.10 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=78.5
Q ss_pred CCCC-cchHHHHHHHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHH--HHcCCChhHHHHHHHHHHHCCCCCCH--HHH
Q 012101 152 LESN-EFCESGFISLYSKAGDFEKARKVFDENPERKLG-SWNAIIAG--LSQDGRAKEAIDMFIGLKKCGFEPDD--VTM 225 (471)
Q Consensus 152 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~ 225 (471)
+.|+ +.+||-|.--+...|+++.|.+.|+..-+-|+. -|..+=++ +--.|++.-|.+-+...-+.. +.|+ ..|
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LW 172 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLW 172 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHH
Confidence 3444 356777777777888888888888887776654 23332222 233577888877776665542 2222 222
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhcCCC-------CHhhHHHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS-LIDMYGKCGRMDLAYKVFWEIDQP-------NVSSWTSMI 297 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li 297 (471)
.-+. -..-++.+|..-+.+- ..+. |..-|.. ++..|...=..+.+.+-...-.+. =+.||--+.
T Consensus 173 LYl~---E~k~dP~~A~tnL~qR---~~~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 173 LYLN---EQKLDPKQAKTNLKQR---AEKS--DKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHH---HhhCCHHHHHHHHHHH---HHhc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 2222 2334555555443322 1121 2222322 222222221222222211111111 124556666
Q ss_pred HHHHhCCChhHHHHHHHHHHHc
Q 012101 298 VGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
+-+...|+.++|..+|+-....
T Consensus 245 K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHH
Confidence 6667777777777777665543
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.85 E-value=13 Score=27.06 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 388 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+-|+..+..+.++||.+.+|+..|.++|+-++..-......|-.+++
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 667899999999999999999999999998887654433335665543
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.81 E-value=4.6 Score=33.90 Aligned_cols=73 Identities=14% Similarity=0.008 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNI 436 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~ 436 (471)
.+..+..+.+.+.+.+|+...+.- .-+| |..+-..+++.++-.|++++|..-++-.-++.|... ..|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566777888888888877765 5566 445666677888888999999888888877777543 244444443
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.39 E-value=29 Score=30.79 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH----hcCCCCChhH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN----VYQIEPRFAH 363 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 363 (471)
++.....|..+|.+.+|.++-++..... +.+...+..++..++..|+--.+.+-++.+.+ ..|+..+...
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3444556677777777777777766542 34555666677777777775555555544432 2355554433
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.35 E-value=2.1 Score=23.54 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+|..++..|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999987654
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.03 E-value=21 Score=28.95 Aligned_cols=133 Identities=8% Similarity=-0.029 Sum_probs=76.4
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc-hHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY-TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF-CESG 161 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 161 (471)
.+...|-.-++. .+.+..++|+.-|..+.+.|...=+. ..........+.|+...|...|+++-.....|-.. -.-.
T Consensus 57 ~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 344455555543 56778899999999998877431111 11112234567888888888888876644333322 1111
Q ss_pred H--HHHHHhcCChhhHHHHhccCCCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 012101 162 F--ISLYSKAGDFEKARKVFDENPERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217 (471)
Q Consensus 162 l--l~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g 217 (471)
| ...+...|.++....-.+-+..+... .-.+|.-+-.+.|++.+|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1 12234566677766666665543222 34455556666777777777777665543
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.91 E-value=0.99 Score=24.61 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=25.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+..++.+|.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 356788899999999999999999987543
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.71 E-value=1.8 Score=25.88 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=20.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 432 VLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
.|..+|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56778888888888888888887544
No 336
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.46 E-value=2.9 Score=37.53 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=67.8
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
.-|.+.|.+++|+..|..... +.| +.+++..-..+|.+..++..|+.-.... .+.- -...|..=+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 358899999999999988764 355 7788888888999999998887765554 2221 123455555555567788
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 012101 410 KMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~ 427 (471)
.+|.+-++...+++|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 888888888889998754
No 337
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=82.23 E-value=19 Score=28.30 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCC---------CCCcchHHHHHHHHHcCCC-hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENP---------ERKLGSWNAIIAGLSQDGR-AKEAIDMFIGLKKCGFEPDDVTMVSV 228 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~l 228 (471)
.|.++...+..+++.....+++.+. ..+-.+|++++.+..+..- ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556666566666666666665543 1234468888888766555 34466777888877778888888888
Q ss_pred HHHHcCcCC
Q 012101 229 TSACGSLGD 237 (471)
Q Consensus 229 i~~~~~~~~ 237 (471)
|.++.+...
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 888766533
No 338
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.77 E-value=32 Score=34.77 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHh----------hHHHHHHHHHhCC
Q 012101 239 ELALQVHKYVFQVKSKQKSD---TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVS----------SWTSMIVGYAANG 304 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----------~~~~li~~~~~~~ 304 (471)
++-..++.+| .++-..|+ ..+...++-.|....+++...++.+.++. ||.. .|.-.++---+-|
T Consensus 180 ~~l~~~L~~m--R~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 180 DQLNDYLDKM--RTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHH--HhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCc
Confidence 3444566666 44433443 34556677778888889999988888876 4332 2222233333457
Q ss_pred ChhHHHHHHHHHHHc--CCCCCHHH-----HHHHH--HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 305 LANEALDCFHYMRES--GIRPNHVT-----FVGVL--SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~--~~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
+-++|+...-.|.+. .+.||..+ |.-+. ..|...+..+.|.+.|++.- .+.|+...--.+...+...|
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAG 334 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhh
Confidence 788888888777765 35677543 22221 23455667788888888775 45676554333333333333
Q ss_pred CH-HHHHHH------HHhC-CCCCCHH---HH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 376 LL-EEARAM------VEGM-PMKANVV---IW---GCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 376 ~~-~~A~~~------~~~m-~~~p~~~---~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.. +.-.++ +..+ |.+-... .| ...+.+-.-.+|+.+|.+.-+.|.++.|+.
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 32 211111 1111 2222211 11 122334455678999999999999988754
No 339
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.70 E-value=52 Score=31.79 Aligned_cols=48 Identities=4% Similarity=-0.135 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 340 KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+.+....+..++....|...-...+.-+-.-|....++++|.+++..+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 444444444444444444444444444444555555555555555544
No 340
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=79.80 E-value=19 Score=26.70 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=33.1
Q ss_pred ccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Q 012101 66 QLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSR 114 (471)
Q Consensus 66 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 114 (471)
|..++++....+.+-. -|..++..|...|..++|++++.++.+
T Consensus 25 N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 25 NYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4555666666665543 388899999999999999999998876
No 341
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.63 E-value=42 Score=29.40 Aligned_cols=225 Identities=15% Similarity=0.217 Sum_probs=116.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHH-hh--cCCCCChhH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKC---GF--EPDDVTMVSVTSACGSLGDLELALQVHKYVFQ-VK--SKQKSDTLM 261 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~ 261 (471)
...+|....+.+++++.++.|.+|..- .+ .-+....+.++..-+...+.+....+|+.-.. ++ .+-..--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566666666666666666665421 01 22344555666555555555555444443210 00 010111123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--------C-------CHhhHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--------P-------NVSSWTSMIVGYAANGLANEALDCFHYMRES-GIRPNH 325 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~ 325 (471)
-..|...|...|.+.+..++++++.+ . -...|..=|+.|....+-.....++++...- .-.|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 34567777777888887777777653 1 1246666777787777777777777765432 234554
Q ss_pred HHHHHHHHHh-----ccCCcHHHHHH-HHHHhHHhcCC--CCChh---HHHHHHHHHHhcCCH----HHHHHHHHhCCCC
Q 012101 326 VTFVGVLSAC-----VHGGKVQEGKH-FFEMMKNVYQI--EPRFA---HYGCMVDLLGRAGLL----EEARAMVEGMPMK 390 (471)
Q Consensus 326 ~~~~~ll~~~-----~~~~~~~~a~~-~~~~~~~~~~~--~p~~~---~~~~li~~~~~~g~~----~~A~~~~~~m~~~ 390 (471)
.... +|+-| .+.|++++|-. +|+.. +.+.- .|... -|-.|..++.+.|-- ++|. -..-.
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAF-KNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNd 301 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAF-KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKND 301 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHH-hcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCC
Confidence 4443 34444 35677777654 34443 32211 23222 244455555555421 1110 01234
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
|.......++.+|-. +++.+.+++++.-.+
T Consensus 302 PEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-NDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc
Confidence 556677778877755 466666666654443
No 342
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.37 E-value=68 Score=31.63 Aligned_cols=378 Identities=12% Similarity=0.094 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccC-CCCchh-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAF-HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA 130 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (471)
.|..||.--.. ......++.+++.+- .-|... -|......=.+.|..+.+.++|++-.+ |++-+...|...+..
T Consensus 47 ~wt~li~~~~~---~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 47 AWTTLIQENDS---IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAF 122 (577)
T ss_pred chHHHHhccCc---hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHH
Confidence 44444433322 333444444444432 334433 344455555666777777777777664 345555555555544
Q ss_pred Hh-ccCCchHHHHHHHHHHHh-CCC-CCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHc---C----
Q 012101 131 SC-QLFALEIGRQLHSLAVRL-GLE-SNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQ---D---- 200 (471)
Q Consensus 131 ~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~---- 200 (471)
+. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++++.+--...|+..-..|.+ .
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~ 202 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEK 202 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChh
Confidence 33 345566666666666553 321 2334566666666666777777777766554322222222221111 1
Q ss_pred --CChhHHHHHHHHHHH--------------------CCCCCCHHH--HHHHHHH-------HcCcCCHHHHHHHHHHHH
Q 012101 201 --GRAKEAIDMFIGLKK--------------------CGFEPDDVT--MVSVTSA-------CGSLGDLELALQVHKYVF 249 (471)
Q Consensus 201 --~~~~~a~~~~~~m~~--------------------~g~~p~~~~--~~~li~~-------~~~~~~~~~a~~~~~~~~ 249 (471)
...+++.++-..... .+-+.+..+ .+.+-.. +-...........++.-
T Consensus 203 ~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~- 281 (577)
T KOG1258|consen 203 ILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEG- 281 (577)
T ss_pred hhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhh-
Confidence 112222221111110 000111111 0011110 11111111112222221
Q ss_pred Hhhc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 250 QVKS-------KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 250 ~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
++. -..++..+|...++.-.+.|+++.+.-+|+...-|- ...|--.+.-.-..|+.+-|..++....+-
T Consensus 282 -IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i 360 (577)
T KOG1258|consen 282 -IKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKI 360 (577)
T ss_pred -ccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence 111 112345678888888889999999999998876532 234544555555558888888877765544
Q ss_pred CC--CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHHHH---HHHHhC-CCCCC
Q 012101 320 GI--RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAH-YGCMVDLLGRAGLLEEAR---AMVEGM-PMKAN 392 (471)
Q Consensus 320 ~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~ 392 (471)
.+ .|....+.+.+. -..|++..|..+++.+.+.. |+... -..-+....+.|..+.+. +++... ..+-+
T Consensus 361 ~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 361 HVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred cCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccC
Confidence 32 333334444433 34679999999999997752 55432 222334556788888877 444444 22222
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 393 VVIWGCLMG-----ACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 393 ~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
..+...+.- -+.-.++.+.|..++.++.+..|.+...|..++......+
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 222222221 2334578899999999999998888888888887765544
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.04 E-value=23 Score=31.16 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=52.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK- 271 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 271 (471)
=|.+++..++|.+++...-+--+.--+........-|-.|.+.+++..+.++-... +...-.-+..-|.++...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~W--L~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAW--LQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHH--HhCcccCCchhhHHHHHHHHHH
Confidence 46777778888887766544433222223334444555677888888877777766 333323333447766666544
Q ss_pred ----cCChHHHHHHH
Q 012101 272 ----CGRMDLAYKVF 282 (471)
Q Consensus 272 ----~g~~~~A~~~~ 282 (471)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666654
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.91 E-value=8 Score=34.86 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=62.4
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
..-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.-........ ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 45689999999999999987754 56 88888888889999999988887777665321 011122333333333445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 012101 376 LLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 376 ~~~~A~~~~~~m-~~~p~~ 393 (471)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666655555 667763
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.84 E-value=22 Score=25.77 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
-++|..+-+.+ ...+.. ...+--.-+..+...|+|++|..+.+.+.-||...|-++-. .+.|..+.+..-+.+|.
T Consensus 21 HqEA~tIAdwL--~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWL--HLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHH--hcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 45555555554 222211 22222223445667888888888888888888888876643 46677777777777887
Q ss_pred HcCCCCCHHHHHH
Q 012101 318 ESGIRPNHVTFVG 330 (471)
Q Consensus 318 ~~~~~p~~~~~~~ 330 (471)
.+| .|....|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.67 E-value=17 Score=29.66 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=23.1
Q ss_pred CCCCCH-HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 388 PMKANV-VIWGCLMGACEKFGN-----------VKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 388 ~~~p~~-~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
.+.|+. .++..+..++...+. +++|...|++..+.+|.+ ..|..-+++.
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~ 123 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMA 123 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHH
Confidence 455554 355555555544331 445555555556666643 3555544443
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.23 E-value=5.9 Score=20.51 Aligned_cols=27 Identities=22% Similarity=0.022 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
|..+...+...|+++.|...+++..+.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 334444444555555555555544443
No 348
>PRK10941 hypothetical protein; Provisional
Probab=78.16 E-value=14 Score=32.77 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+.+-.+|.+.++++.|.+..+.+....|.++.-+.--+-.|.+.|.+..|..=++...+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 444555666667777777777777766666665555556666666666666666655554433
No 349
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.94 E-value=17 Score=30.92 Aligned_cols=65 Identities=12% Similarity=0.071 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcCCC--C----CchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 395 IWGCLMGACEKFGNVK-------MGEWVAKHLQELEPW--S----DGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+-.+.+.|...|+.+ .|.+.|++..+.+.. . ......++....+.|++++|.+.|.++...+-.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4444556666666643 444555554443321 1 124556777778888888888888888776543
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.90 E-value=80 Score=31.65 Aligned_cols=46 Identities=15% Similarity=0.032 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHH--H-HhccCCchHHHHHHHHHHH
Q 012101 103 KKALDIYIFMSRAGVLPDCYTLPIVLK--A-SCQLFALEIGRQLHSLAVR 149 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~~~~~~ll~--~-~~~~~~~~~a~~~~~~~~~ 149 (471)
..|.+.++...+.|.. ........+. + ....+|.+.|..++..+.+
T Consensus 229 ~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 4577777777666522 1111111111 2 3455677777777777765
No 351
>PF13934 ELYS: Nuclear pore complex assembly
Probab=77.75 E-value=39 Score=29.14 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012101 367 MVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m 387 (471)
++.++...|+.+.|+.+++.+
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 444444455555555555555
No 352
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.63 E-value=7.5 Score=24.43 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4556888999999999999999999997754
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.58 E-value=20 Score=31.57 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=57.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh-
Q 012101 90 NNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK- 168 (471)
Q Consensus 90 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~- 168 (471)
..-|++++..+++.+++...-+--+.--+.-......-|-.|++.+++..+.++-..-.+..-.-+..-|.++...|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3458889999999888766544322111112233444455688888988888888777764333344457777766654
Q ss_pred ----cCChhhHHHHh
Q 012101 169 ----AGDFEKARKVF 179 (471)
Q Consensus 169 ----~g~~~~a~~~~ 179 (471)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 47788887776
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.49 E-value=82 Score=31.57 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=60.8
Q ss_pred hHHHHHHhcccCCCCchhhHHHHHHH-----HHhCCCchHHHHHHHHHHH-------CCCCCCcchHHHHHHHHhccC--
Q 012101 70 IYAHIIRTHMLHSYSAAFHWNNIIRL-----YTRLEAPKKALDIYIFMSR-------AGVLPDCYTLPIVLKASCQLF-- 135 (471)
Q Consensus 70 ~~~a~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-- 135 (471)
...|.++++......++.+-..+... +....+++.|+..|+...+ .| +.....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 35678888777665555554444333 3355789999999999877 44 2334444555554432
Q ss_pred ---CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh-cCChhhHHHHhccCC
Q 012101 136 ---ALEIGRQLHSLAVRLGLESNEFCESGFISLYSK-AGDFEKARKVFDENP 183 (471)
Q Consensus 136 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~ 183 (471)
+.+.|..++.+..+.| .|+....-..+..... ..+...|.++|....
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 4566777777777666 3333322222222111 134455555555443
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=76.82 E-value=91 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=30.6
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHH--HHHHhcCCHHHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPR-----FAHYGCMV--DLLGRAGLLEEARAMVE 385 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li--~~~~~~g~~~~A~~~~~ 385 (471)
-.+++..|.+.++.+.....-.|+ ...+..++ -.+...|+++.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357888899888888654332222 11222222 23345799999999997
No 356
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.11 E-value=50 Score=28.40 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
.-+..|.+.-++.-|-..++++.+|=..- +.+--|.+..+..--.++.+-....+++-+......++ +...|+..+
T Consensus 135 RtMEiyS~ttRFalaCN~s~KIiEPIQSR--CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQ 210 (333)
T KOG0991|consen 135 RTMEIYSNTTRFALACNQSEKIIEPIQSR--CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQ 210 (333)
T ss_pred HHHHHHcccchhhhhhcchhhhhhhHHhh--hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHH
Confidence 34556666666666666666665542221 12223444444444444555555566666666665555 456788888
Q ss_pred HHHHHHHhHHhcCC-----------CCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 344 GKHFFEMMKNVYQI-----------EPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 344 a~~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
|...++.-...+|. .|.+.....++..+ ..+++++|.+++.++
T Consensus 211 alNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~l 264 (333)
T KOG0991|consen 211 ALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAEL 264 (333)
T ss_pred HHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHH
Confidence 88888776655443 34444444444432 345566666666665
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.01 E-value=54 Score=28.75 Aligned_cols=184 Identities=16% Similarity=0.166 Sum_probs=111.6
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHcCcCCHHHHHHHHHHHHH-hhcCC--CCChhHHHHHHHHHHhc
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPDDV---TMVSVTSACGSLGDLELALQVHKYVFQ-VKSKQ--KSDTLMLNSLIDMYGKC 272 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~~ 272 (471)
+..++++|+.-|++..+..-..... ....++....+.+++++....|.++.. +++.+ ..+....|++++.-+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457999999999888754333333 344678888999999999999998832 11221 22345677788777766
Q ss_pred CChHHHHHHHHhcCC-----CCHh----hHHHHHHHHHhCCChhHHHHHHHHHHHcCC----CCCH-------HHHHHHH
Q 012101 273 GRMDLAYKVFWEIDQ-----PNVS----SWTSMIVGYAANGLANEALDCFHYMRESGI----RPNH-------VTFVGVL 332 (471)
Q Consensus 273 g~~~~A~~~~~~~~~-----~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~-------~~~~~ll 332 (471)
.+.+--..+++.-.+ .|.. |-.-+...|...+.+.+..++++++...-- .-|. ..|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666665555543321 2222 234466777777888888888888765411 1111 2455566
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH----HHHhcCCHHHHHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD----LLGRAGLLEEARA 382 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~ 382 (471)
..|...++-..-..+++.......--|.+.....+-. +..+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 6666666766777777766544333455544432221 2345677777643
No 358
>PRK09687 putative lyase; Provisional
Probab=75.34 E-value=61 Score=29.04 Aligned_cols=80 Identities=9% Similarity=-0.031 Sum_probs=37.0
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc----hHHHHHHHHHHHhCCCCCcchH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL----EIGRQLHSLAVRLGLESNEFCE 159 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 159 (471)
+|.......+.++...|. +++...+..+.+ .+|...-...+.++++.|+. +.+...+..+... .++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 344445555555555554 333444444433 23445555555566666553 2344444444221 3444444
Q ss_pred HHHHHHHHhc
Q 012101 160 SGFISLYSKA 169 (471)
Q Consensus 160 ~~ll~~~~~~ 169 (471)
...+.++...
T Consensus 109 ~~A~~aLG~~ 118 (280)
T PRK09687 109 ASAINATGHR 118 (280)
T ss_pred HHHHHHHhcc
Confidence 4444444443
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.11 E-value=28 Score=26.71 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 411 MGEWVAKHLQELE--PWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 411 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.+.++|+.|.+.+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888888887755 44445788888889999999999999875
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.27 E-value=81 Score=29.50 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=48.4
Q ss_pred CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-cCCChHHHHHHHHHhhc
Q 012101 392 NVVIWGC---LMGACEKFGNVKMGEWVAKHLQELEPW-SDGAYVVLSNIYA-SRGLWEEVERIRAVMKH 455 (471)
Q Consensus 392 ~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 455 (471)
|...|.+ .+....+.|-+..|.++.+-+.+++|. +|-.-..+++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4444444 446778899999999999999999987 7766667777775 77888888888776654
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.16 E-value=9.8 Score=22.80 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=13.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc
Q 012101 296 MIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666655543
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.08 E-value=35 Score=25.16 Aligned_cols=79 Identities=16% Similarity=0.130 Sum_probs=39.3
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
..++|..+.+.+...+- ....+--..+..+...|++++|...=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34566666666655442 12222223334556667777775444455556666655543 3456666666666666655
Q ss_pred CC
Q 012101 216 CG 217 (471)
Q Consensus 216 ~g 217 (471)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.79 E-value=2e+02 Score=33.87 Aligned_cols=146 Identities=10% Similarity=0.011 Sum_probs=91.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHH----HHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFM----SRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLY 166 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 166 (471)
.+..+-.+.+.+.+|+..++.- .+.. ....-|..+...|+..+++|....+...-. .+...++ -|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHH
Confidence 3444666778889999888883 2221 123334445558999999999888877421 1223333 34456
Q ss_pred HhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHcCcCCHHHHH
Q 012101 167 SKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV-TSACGSLGDLELAL 242 (471)
Q Consensus 167 ~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~ 242 (471)
...|++..|...|+.+.+.+.. .++-++......|.++.++-..+-.... ..+....++++ +.+--+.++++..+
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 6789999999999998765443 6888887777788888887766555543 12333333322 33334666666665
Q ss_pred HHH
Q 012101 243 QVH 245 (471)
Q Consensus 243 ~~~ 245 (471)
...
T Consensus 1539 ~~l 1541 (2382)
T KOG0890|consen 1539 SYL 1541 (2382)
T ss_pred hhh
Confidence 553
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.66 E-value=12 Score=25.65 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=20.7
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRF-AHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~ 382 (471)
..+..++|+..|....++..-.|+. .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554432211211 233444555555555555444
No 365
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.46 E-value=55 Score=27.24 Aligned_cols=89 Identities=18% Similarity=0.047 Sum_probs=50.1
Q ss_pred HHHcCcCCHHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhh--HHHHHHHHHhCCC
Q 012101 230 SACGSLGDLELALQVHKYVFQVKSKQKSD--TLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSS--WTSMIVGYAANGL 305 (471)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~ 305 (471)
..+...+++++|...++.. .......+ ..+--.|.......|.+++|..+++....++-.. ...-...+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~--l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQA--LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHH--HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 3445666677776666655 22111111 1112234455666777777777777776654332 3334456677777
Q ss_pred hhHHHHHHHHHHHcC
Q 012101 306 ANEALDCFHYMRESG 320 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~ 320 (471)
-++|..-|.+..+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777776664
No 366
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.46 E-value=72 Score=30.45 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=34.7
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhcCCh
Q 012101 97 TRLEAPKKALDIYIFMSRAGVLPDCYT--LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF--CESGFISLYSKAGDF 172 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~ 172 (471)
++.|+.+ +++.+.+.|..|+... ..+.+..++..|+.+-+ +.+.+.|..|+.. ...+-+...++.|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445543 3444445566555432 23344445555555433 3334445444322 112233444455665
Q ss_pred hhHHHHhcc
Q 012101 173 EKARKVFDE 181 (471)
Q Consensus 173 ~~a~~~~~~ 181 (471)
+.+..+++.
T Consensus 82 ~~v~~Ll~~ 90 (413)
T PHA02875 82 KAVEELLDL 90 (413)
T ss_pred HHHHHHHHc
Confidence 555555543
No 367
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.30 E-value=57 Score=27.31 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=60.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHH
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNHV-----TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLL 371 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~ 371 (471)
.-+...|++++|..-|.+..+. +++... .|..-..++.+.+.++.|+.-..+..+. .|+.. ....-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 4567889999999999888876 333322 2333334567778888888777776543 45321 222223477
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCHH
Q 012101 372 GRAGLLEEARAMVEGM-PMKANVV 394 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p~~~ 394 (471)
.+...+++|++-++.+ ...|...
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchH
Confidence 7888888888888887 5566544
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.22 E-value=1.2e+02 Score=30.93 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=38.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh---
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR--- 373 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~--- 373 (471)
...+.-.|+++.|.+++-+ ..+...+.+.+...+..|.-.+-.+... ..+.....-.|....+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888887766 2234556666666665543322222211 2221110111222456677777765
Q ss_pred cCCHHHHHHHHHhC
Q 012101 374 AGLLEEARAMVEGM 387 (471)
Q Consensus 374 ~g~~~~A~~~~~~m 387 (471)
..++.+|.+.+--+
T Consensus 340 ~td~~~Al~Y~~li 353 (613)
T PF04097_consen 340 ITDPREALQYLYLI 353 (613)
T ss_dssp TT-HHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHH
Confidence 46777777777766
No 369
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=71.54 E-value=75 Score=28.35 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS-KQKSDTLMLNSLIDMYGKCGRMDLAYKVF 282 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (471)
.++..+...++..++..+++.+-.++++.. ... +...|...|..+++.-...|+..-..++.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~--~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQC--IPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHh--cccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 445555555555555555555555555544 332 33444455555555555555544444443
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.13 E-value=10 Score=20.13 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
|+.+.+..+|+++.+..|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 466778888888887777666666655543
No 371
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.95 E-value=24 Score=26.79 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 207 IDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 207 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
.+-++.+..-.+.|++......+.+|.+.+|+..|.++++.+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~i 110 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAI 110 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334444445566777777777777777777777777777766
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.89 E-value=61 Score=28.76 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=22.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTF 328 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 328 (471)
+.+-..+.+++++|+..+.+....|+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 344556677777788777777777777776654
No 373
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.42 E-value=40 Score=32.20 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred HHhcCChHHHH-HHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 269 YGKCGRMDLAY-KVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 269 ~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
-...|+...|- ++|..+.. |+.+...+ ..+...|.++.+...+...... +.....+...++....+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 33456655543 34443332 44443333 3456678888888887766543 44556677888888888888888
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMG 401 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 401 (471)
|...-..|... .++ +..............|-++++...+++. .+.| ...-|..++.
T Consensus 376 a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~ 433 (831)
T PRK15180 376 ALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLS 433 (831)
T ss_pred HHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeec
Confidence 88888877644 332 2233333333344567778888888877 3333 3334444443
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.10 E-value=22 Score=29.73 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=14.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
.|+..+|..++.++...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.10 E-value=25 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 308 EALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 308 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+..+-++.+..-.+.|+.......+.+|.+.+++..|.++|+-++.+.| +....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 4455566666778899999999999999999999999999999976543 33334555443
No 376
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.88 E-value=54 Score=26.97 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=10.1
Q ss_pred HHHHhcCChhhHHHHhccC
Q 012101 164 SLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~ 182 (471)
..|.+.|.+++|.+++++.
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHhcCchHHHHHHHHHH
Confidence 4455555555555555543
No 377
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.98 E-value=29 Score=25.73 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
-|..++..|...|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455666666666666666666666655
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.53 E-value=13 Score=25.61 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChHHHHHH
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~ 449 (471)
...+.++|+..++...+.-+.++. ++..++.+|...|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665544443 233455556666666665553
No 379
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.80 E-value=1.2e+02 Score=28.99 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=30.0
Q ss_pred hHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012101 189 SWNAIIAGLSQ---DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSAC 232 (471)
Q Consensus 189 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 232 (471)
.+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34555555554 478889999999999888777765555555443
No 380
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.75 E-value=28 Score=29.08 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 388 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...|+..+|..++.++...|+.++|.+..+++...-|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6789999999999999999999999999999998888
No 381
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.89 E-value=23 Score=30.46 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=75.1
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAH-YGCMVDLLGRAGLLEEARAMVEGM-PMKANVVI-WGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~l~~~~~~~~~~~~ 411 (471)
|.....++.|...+.+.. -+.|+..+ |+.=+..+.+..+++.+..--.+. .+.||.+- ...+..+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 556677888888777765 44677744 456666777888888887766665 77787764 4445566678888999
Q ss_pred HHHHHHHHHhcCCC---C--CchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 412 GEWVAKHLQELEPW---S--DGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 412 a~~~~~~~~~~~~~---~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
|+..+.+..++... + +.+...|..+=-..=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999988665422 2 224445554443333444555555443
No 382
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.40 E-value=1.5e+02 Score=29.39 Aligned_cols=121 Identities=11% Similarity=0.087 Sum_probs=64.9
Q ss_pred hCCChhHHHHHHHHHHHcCCCC------------CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc--CCCC--------
Q 012101 302 ANGLANEALDCFHYMRESGIRP------------NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY--QIEP-------- 359 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~p-------- 359 (471)
.++.+++|...|.-..... .| -..+...+...|...|+.+.|..+.++..-.. -+.|
T Consensus 250 hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 3455667777666555431 22 12234445556777777777777766543110 0111
Q ss_pred ---------ChhHHHHH---HHHHHhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcC
Q 012101 360 ---------RFAHYGCM---VDLLGRAGLLEEARAMVEGM-PMKA--NVVIWGCLMGACE-KFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 360 ---------~~~~~~~l---i~~~~~~g~~~~A~~~~~~m-~~~p--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~ 423 (471)
|...|-++ +..+.+.|.+..|.++.+-+ .+.| |......+|..|+ +..++.--+++++.....+
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 12223322 33455677777777776666 4444 3455555565554 5566777777766665433
No 383
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.01 E-value=35 Score=24.07 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=24.7
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEA 206 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 206 (471)
..|+.+.|.++++.++ ++...|..++.++-..|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466667777777776 6666667777766666655444
No 384
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=64.58 E-value=1.4e+02 Score=28.93 Aligned_cols=296 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred cccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 65 LQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
++.+.+++-.+-+-++-..-+...+...-.+.--.-+-+....+|++..+. .|+...|+..|..|...-.......+.
T Consensus 261 ~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~ 338 (568)
T KOG2396|consen 261 DNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRIL 338 (568)
T ss_pred CCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT 224 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 224 (471)
..+. +-+...-.....+....-|..+...+... .++...-..+...++..|...
T Consensus 339 h~~~-----------------------~~~~~~~~~~l~~~~~~~ys~~~l~~~t~---~~~r~~a~~l~~e~f~~s~k~ 392 (568)
T KOG2396|consen 339 HTMC-----------------------VFRKAHELKLLSECLYKQYSVLLLCLNTL---NEAREVAVKLTTELFRDSGKM 392 (568)
T ss_pred HHHH-----------------------HHHHHHHhcccccchHHHHHHHHHHHhcc---chHhHHHHHhhHHHhcchHHH
Q ss_pred HHHHHHHHcCc--CCHHHHHHHHHHHHHhhcCCCCChhHHHHHH-HHHHhcCChHHHHHHHHhcCCCCHhhH-HHHHHHH
Q 012101 225 MVSVTSACGSL--GDLELALQVHKYVFQVKSKQKSDTLMLNSLI-DMYGKCGRMDLAYKVFWEIDQPNVSSW-TSMIVGY 300 (471)
Q Consensus 225 ~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~li~~~ 300 (471)
|..-+...... .---.-..++... .+.-..+....|++.. ..+......+.....+..+..++..++ +.++.-+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~--r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~ 470 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHL--RKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWA 470 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH--HHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHH
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSA---CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
.+.|-..+|...+..+... .+|+...|..+++. ...+| ..-+..+++.+...+| .++..|--.+..=...|..
T Consensus 471 ~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~ 546 (568)
T KOG2396|consen 471 YESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRP 546 (568)
T ss_pred HHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCc
Q ss_pred HHHHHHHHhC--CCCCCHH
Q 012101 378 EEARAMVEGM--PMKANVV 394 (471)
Q Consensus 378 ~~A~~~~~~m--~~~p~~~ 394 (471)
+.+-.++.+. ...|...
T Consensus 547 en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 547 ENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred ccccHHHHHHHHhhChhhh
No 385
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.11 E-value=15 Score=28.39 Aligned_cols=70 Identities=14% Similarity=-0.008 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 358 EPRFAHYGCMVDLLGRAGLLE---EARAMVEGM-P-MKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.++..+--.+..++.+..+.+ +...++++. . -.|+ ......|.-++.+.++++++.++.+.+.+.+|+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 455555555666666665544 445566666 2 3342 23444455678888888888888888888887665
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.74 E-value=66 Score=29.16 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=9.4
Q ss_pred HhCCChhHHHHHHHHHHH
Q 012101 301 AANGLANEALDCFHYMRE 318 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~ 318 (471)
.+.|+..+|.+.++++.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 344555555555555443
No 387
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.45 E-value=28 Score=24.77 Aligned_cols=53 Identities=17% Similarity=0.008 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHcCCChH
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--SDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 444 (471)
|...-..+...+...|+++.|.+.+-.+.+..+. +...-..|+.++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666777788888888888877777766543 3445666777766666543
No 388
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.20 E-value=26 Score=25.10 Aligned_cols=53 Identities=13% Similarity=0.024 Sum_probs=34.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----C---C--chHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPW----S---D--GAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~----~---~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
..+.||+..|.+.+.+..+.... . . .....++......|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34678888887766666543211 1 0 1223456667788999999988888754
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.97 E-value=37 Score=33.30 Aligned_cols=134 Identities=12% Similarity=-0.005 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHhccC--CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhC-CCCCC--HHH
Q 012101 322 RPNHVTFVGVLSACVHG--GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG-RAGLLEEARAMVEGM-PMKAN--VVI 395 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p~--~~~ 395 (471)
-|+..+..+++.-.... ...+-+-.++..|.. .+.|--...| +...|. ..|+...|.+.+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 45666665555433321 233445555555532 2222211111 222333 356777777766665 44442 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
...|.+...+.|-...|-.++.+...+....|-++..++++|....+++.|++-|+...+...
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 455556666666666777777776666655566677777777777777777777776665443
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.28 E-value=1.1e+02 Score=27.00 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=73.2
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHcCcCCHH-HHH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDM----FIGLKKCGFEPDDVTMVSVTSACGSLGDLE-LAL 242 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-~a~ 242 (471)
+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 45566666666532 22234445554444333 333344566666655555555443322111 122
Q ss_pred HHHHHHHH---hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 243 QVHKYVFQ---VKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 243 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
++.+.+.. ......-++.....+...|.+.|++.+|+.-|-.-..++...+..++......|...+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e----------- 139 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE----------- 139 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----------
Confidence 22222210 1122334567788888889999999988877655544444333223322222222221
Q ss_pred CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 320 GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
+|...-..++. |...++...|...+....+.
T Consensus 140 ---~dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 140 ---ADLFIARAVLQ-YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ---HHHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred ---hhHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 22333333443 44567888888877776654
No 391
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.09 E-value=27 Score=21.37 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=18.5
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcchHHHHHH
Q 012101 97 TRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLK 129 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 129 (471)
.+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445555566666666666665555555555443
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=61.06 E-value=1.5e+02 Score=28.01 Aligned_cols=18 Identities=6% Similarity=-0.173 Sum_probs=9.2
Q ss_pred hCCChhHHHHHHHHHHHc
Q 012101 302 ANGLANEALDCFHYMRES 319 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~ 319 (471)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555544
No 393
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.89 E-value=2e+02 Score=29.47 Aligned_cols=81 Identities=10% Similarity=-0.182 Sum_probs=45.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCChH
Q 012101 368 VDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELE---PWSDGAYVVLSNIYASRGLWE 444 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 444 (471)
+..+...|....|...+..+....+......+.....+.|..+.+..........+ ..-|..|...+..+.+.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34556678888888777776222455555555555667777777766665433211 111234555666665555555
Q ss_pred HHHH
Q 012101 445 EVER 448 (471)
Q Consensus 445 ~A~~ 448 (471)
.++-
T Consensus 494 ~~lv 497 (644)
T PRK11619 494 QSYA 497 (644)
T ss_pred HHHH
Confidence 5543
No 394
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.79 E-value=2.1e+02 Score=29.55 Aligned_cols=74 Identities=7% Similarity=0.074 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
+...+|..+...|++++|-...-.|-..+..-|.-.+..+...++......++ ....-..+...|..++..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 45556666666666666666666665555555555555555555444333221 111112344556666655554
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.78 E-value=31 Score=28.31 Aligned_cols=62 Identities=10% Similarity=0.008 Sum_probs=33.4
Q ss_pred chHHHHHHhcccCCCCchh----------hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 69 QIYAHIIRTHMLHSYSAAF----------HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
.+++|+.+++.+...-+.. .-...+..|.+.|.+++|.+++++..+ .|+......-+....+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 3567777777665322210 111244567777777777777777765 2444444444433333
No 396
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=1.4e+02 Score=27.28 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=9.2
Q ss_pred CChHHHHHHHHhcCCCCH
Q 012101 273 GRMDLAYKVFWEIDQPNV 290 (471)
Q Consensus 273 g~~~~A~~~~~~~~~~~~ 290 (471)
++.+....++..+.+.+.
T Consensus 36 ~~~~~~e~l~~~Ird~~M 53 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDM 53 (393)
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 344555556655554433
No 397
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.99 E-value=1.4e+02 Score=27.25 Aligned_cols=55 Identities=15% Similarity=-0.113 Sum_probs=21.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 367 MVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
++....+.|..+.-..+++.....++...-..++.+.+...+.+...++++.+..
T Consensus 175 v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 175 VYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333334444333333333332233444444444444444444444444444444
No 398
>PHA03100 ankyrin repeat protein; Provisional
Probab=59.85 E-value=1.8e+02 Score=28.44 Aligned_cols=12 Identities=8% Similarity=-0.003 Sum_probs=5.3
Q ss_pred CChHHHHHHHHH
Q 012101 441 GLWEEVERIRAV 452 (471)
Q Consensus 441 g~~~~A~~~~~~ 452 (471)
...+++.+.++.
T Consensus 430 ~~i~~~~~~~~~ 441 (480)
T PHA03100 430 KLIKKIIKKLNN 441 (480)
T ss_pred HHHHHHHHHHHh
Confidence 344444444444
No 399
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.72 E-value=1.7e+02 Score=28.31 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=70.4
Q ss_pred HHHHhcCChHHHHHHHHhcCC---------C---CHhhHHHHHHHHHhCCChhHHHHHHHHHHH-------cCCCCCH--
Q 012101 267 DMYGKCGRMDLAYKVFWEIDQ---------P---NVSSWTSMIVGYAANGLANEALDCFHYMRE-------SGIRPNH-- 325 (471)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~---------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~-- 325 (471)
+.+.-.|++.+|.+++....- | ....||.|...+.+.|.+.-+..+|.+... .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345567999999998875531 1 224467776677777777777777776653 3555432
Q ss_pred ---------HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 012101 326 ---------VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372 (471)
Q Consensus 326 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 372 (471)
.+||.=+ .|...|++-.|.+.|.+....+ ..++..|-.|..+|.
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~vf--h~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHVF--HRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 3455433 3567899999999999988764 567778888888775
No 400
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.96 E-value=21 Score=31.80 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=35.0
Q ss_pred CCHh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012101 288 PNVS-SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL 332 (471)
Q Consensus 288 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 332 (471)
+|.. -|+..|....+.|++++|+.++++.++.|+.--..+|...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4443 46788999999999999999999999998776666665444
No 401
>PRK12798 chemotaxis protein; Reviewed
Probab=58.65 E-value=1.7e+02 Score=27.79 Aligned_cols=186 Identities=13% Similarity=0.112 Sum_probs=115.8
Q ss_pred cCChHHHHHHHHhcCC----CCHhhHHHHHHHHHh-CCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 272 CGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAA-NGLANEALDCFHYMRES--GIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
.|+.+++.+.+..+.. +....|-.|+.+-.. ..++.+|+++|+..+-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 5888889988888865 444566667666544 46789999999987653 1111233344445556788999888
Q ss_pred HHHHHHhHHhcCCCCChhHHH-HHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 345 KHFFEMMKNVYQIEPRFAHYG-CMVDLLGRA---GLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
..+-.....++.-.|-..-|. .+..++.+. ...+.-..++..|.-.--...|-.+.+.-.-.|+.+.|.-.-++..
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 777666666554445433332 233333333 3445555666666322234588888888889999999998888888
Q ss_pred hcCCCCCchHHHHHHHH-----HcCCChHHHHHHHHHhhcCCC
Q 012101 421 ELEPWSDGAYVVLSNIY-----ASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 421 ~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+... ...-...+..| .-..++++|.+.++.+....+
T Consensus 285 ~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 285 KLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 87632 22222222333 234567778777777665544
No 402
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.95 E-value=1.3e+02 Score=26.12 Aligned_cols=90 Identities=12% Similarity=0.195 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChh-HHHHHH---HHHHhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHH---HHHh
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFA-HYGCMV---DLLGRAGLLEEARAMVEGM---PMKANVVIWG---CLMG---ACEK 405 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li---~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~---~l~~---~~~~ 405 (471)
.++++|+..|+..-+-+...-... .-.+++ ..-+..+++.+|.++|++. ....+..-|. .++. ++.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566677777766644332221111 112222 3335678889999998887 2222222221 1221 2223
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
..|.-.+...+++..+..|.-..
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred cccHHHHHHHHHHHHhcCCcccc
Confidence 36777778888888888875433
No 403
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=57.70 E-value=1.5e+02 Score=26.99 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=15.9
Q ss_pred chHHHHHHhccc-CCCCchhhHHHHHHHH
Q 012101 69 QIYAHIIRTHML-HSYSAAFHWNNIIRLY 96 (471)
Q Consensus 69 ~~~~a~~~~~~~-~~~~~~~~~~~li~~~ 96 (471)
++..++.++..+ +..++...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 366677777766 5566666666655543
No 404
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=57.28 E-value=1.7e+02 Score=27.43 Aligned_cols=190 Identities=11% Similarity=0.043 Sum_probs=103.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHH--HHHHHHHcCCCCCHHHHHHH
Q 012101 254 KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALD--CFHYMRESGIRPNHVTFVGV 331 (471)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~l 331 (471)
+...+..+...+++.|...++|+.--... ....-+.|+...|.. +.+-|.-..-.||..|-..+
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 34445566666777777777766433321 112234556555544 22223222234555555555
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC------CCHH--HHHHHHHHH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMK------ANVV--IWGCLMGAC 403 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------p~~~--~~~~l~~~~ 403 (471)
+..+... . +-++|-+.. -...-..+...+...|+.++|..++.+.++. -... ..---++.|
T Consensus 113 i~tLr~V---t-egkIyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKO 181 (439)
T KOG1498|consen 113 IETLRTV---T-EGKIYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLC 181 (439)
T ss_pred HHHHHHh---h-cCceEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHH
Confidence 4433110 0 001111110 0122234666777888888888888877321 1111 111224567
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceee
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDG-------AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 468 (471)
...+|+-.|.-+-+++.......+. .|..++....+.+.+=++-+.++.+-..|-.+...-.|..
T Consensus 182 G~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 182 LLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 7788888888777777654433332 5777888888888888888888888887766654444443
No 405
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.07 E-value=22 Score=23.15 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVE 385 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~ 385 (471)
+|.+|...|++++|.+.++
T Consensus 29 vI~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444444444444444433
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.74 E-value=23 Score=31.57 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=31.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
-||..|....+.||.++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 37788888888899999999999888888766555555443
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.74 E-value=45 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=22.5
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777666666654
No 408
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=55.53 E-value=1.4e+02 Score=26.94 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 141 RQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.++..+|+.+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 3455555555555555555544445555555555555555543
No 409
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.03 E-value=94 Score=23.82 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 412 GEWVAKHLQELEP--WSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 412 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
..++|..|.+.+. .....|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667888876553 334467788888889999999998886
No 410
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.01 E-value=50 Score=23.91 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=22.0
Q ss_pred HHHHHHHHhcC-CCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 413 EWVAKHLQELE-PWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 413 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
++.++++...+ +.+|.....|.-.|++.|+-+.|.+-|+.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 34444444333 44555556666666666666666666554
No 411
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.87 E-value=3.1e+02 Score=29.66 Aligned_cols=258 Identities=7% Similarity=-0.083 Sum_probs=140.5
Q ss_pred hHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc
Q 012101 174 KARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS 253 (471)
Q Consensus 174 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 253 (471)
....+...+..+|...-...+..+.+.+..+ +...+....+ .+|...-...+.++.+.+........+... +..
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~--L~~ 695 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDH--LGS 695 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHH--hcC
Confidence 4445666666777777777777777777544 4444445443 344444445555544332211112233333 222
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 254 KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
+|..+-...++++...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....
T Consensus 696 ---~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~ 764 (897)
T PRK13800 696 ---PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAK 764 (897)
T ss_pred ---CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHH
Confidence 4556666666666654322 12345556667777766777777776655432 22222 2456666666666
Q ss_pred HhccCCcHHH-HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 012101 334 ACVHGGKVQE-GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 334 ~~~~~~~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a 412 (471)
++...+..+. +...+..+.. .++...-...+.++...|..+.+...+..+-..+|...-...+.++...+.. ++
T Consensus 765 aL~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-~a 839 (897)
T PRK13800 765 GLATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAAD-VA 839 (897)
T ss_pred HHHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcccc-ch
Confidence 7766665433 3344445433 3566677778888888887665544444442245666666677777777653 34
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 413 EWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
...+..+.+ -++...-..-+.++.+.+.-..+...+....+
T Consensus 840 ~~~L~~~L~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 840 VPALVEALT--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 444444432 22334455556666664333455555555444
No 412
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=54.20 E-value=2.5e+02 Score=28.37 Aligned_cols=59 Identities=7% Similarity=-0.052 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCCCC-chhhHHHHHHHHHhCCCchHHHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHSYS-AAFHWNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
+-..|+.-..+.-....-+.+.+++..-+... +..-|+ .+..++-.|.++.|.+++...
T Consensus 115 v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 115 VPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55666665534211122222333443333222 255676 688888899999999998543
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.00 E-value=1.6e+02 Score=26.27 Aligned_cols=23 Identities=0% Similarity=-0.087 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVE 385 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~ 385 (471)
.+..+...|++.++.+.+.+++.
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444444444444444433
No 414
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.79 E-value=30 Score=31.00 Aligned_cols=78 Identities=8% Similarity=0.019 Sum_probs=51.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGC-LMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
.-|+..|...+..-.+.|.+.+.-.++.+. ...| |...|-. .-.-+...++++.+..+|.+..++++.+|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 445556666665555666777777777776 4445 3334433 223456778899999999999999988888766443
Q ss_pred H
Q 012101 435 N 435 (471)
Q Consensus 435 ~ 435 (471)
.
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 3
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.23 E-value=79 Score=22.36 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=17.3
Q ss_pred cCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChh
Q 012101 272 CGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLAN 307 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 307 (471)
.|+.+.|.+++..+. ..+..|..++.++...|+-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 344555555555555 44444555555555444433
No 416
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=52.77 E-value=1.7e+02 Score=28.17 Aligned_cols=78 Identities=9% Similarity=0.103 Sum_probs=53.3
Q ss_pred CchHHHHHHhcccCCCCchhhHHHHHHHHHhC-----------CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 012101 68 NQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRL-----------EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA 136 (471)
Q Consensus 68 ~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 136 (471)
-++++|..+.+.++..++ +...+...-+. +.+++-+++++.+.+.| .+| ...+-|+.|.+.++
T Consensus 28 vd~~eav~y~k~~p~~k~---f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~ 101 (480)
T TIGR01503 28 VDLQDAVDYHKSIPAHKN---FAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNR 101 (480)
T ss_pred CCHHHHHHHHHhCCcccc---HHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeeccccccc
Confidence 367888888888875444 33333333322 34678888888888776 223 44556788899999
Q ss_pred chHHHHHHHHHHHhC
Q 012101 137 LEIGRQLHSLAVRLG 151 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~ 151 (471)
++.|...+++-.+.|
T Consensus 102 y~~A~~~l~~s~~~~ 116 (480)
T TIGR01503 102 YDEAAVGIKESIKAG 116 (480)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999988876643
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.22 E-value=75 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=31.0
Q ss_pred HhcCCHHHHHHHHHhC------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 372 GRAGLLEEARAMVEGM------PMKAN-----VVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m------~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+.|++..|.+.+.+. ...+. ....-.+.......|+.++|...+++..+.-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3566666665554444 11111 1223334456678889999999988887754
No 418
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=51.84 E-value=96 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
++|.+.|++.... .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 4444444444433 55656665555544
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.72 E-value=1.1e+02 Score=23.50 Aligned_cols=42 Identities=7% Similarity=0.020 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHH
Q 012101 104 KALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHS 145 (471)
Q Consensus 104 ~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 145 (471)
.+.++|+.|..+|+.-.. ..|......+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555554443222 223334444444555555555544
No 420
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=51.53 E-value=59 Score=32.01 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=70.4
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
-.|+...|...+...........+ +..-.|.....+.|...+|..++... .+. ....++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 358888899888877543222122 23345666677778888888887766 333 345678888899999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHH
Q 012101 415 VAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.|+.+.+..+.++..-+.|..
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHH
Confidence 999999999888776554443
No 421
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.51 E-value=69 Score=27.79 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=58.4
Q ss_pred HhccCCcHHHHHHHHHHhHHhc-----CCCCChhHH-----------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVY-----QIEPRFAHY-----------GCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVI 395 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~-----~~~p~~~~~-----------~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~ 395 (471)
-+.+.|++.+|..-|.+..... .-+|...-| ..+.+++...|++-++++...+. ...| |...
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4667889999988887754210 113332222 22334445567777777776666 4444 5567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
|-.=..|.+..-+..+|..=|..+.++.|.-
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 7666677777777888888888888877643
No 422
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=51.19 E-value=1.1e+02 Score=23.43 Aligned_cols=56 Identities=13% Similarity=0.061 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGC-LMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 418 (471)
+..++.-++.-.|..+.|.++++..+..++....|. ++..|.+..+-++..++-++
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344555566666777777777776655455554443 56666666666555554443
No 423
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.03 E-value=1.7e+02 Score=25.44 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=7.8
Q ss_pred cCCcHHHHHHHHHHh
Q 012101 337 HGGKVQEGKHFFEMM 351 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~ 351 (471)
..+++.+|+++|+++
T Consensus 166 ~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555555
No 424
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.95 E-value=39 Score=22.00 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=13.1
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 328 FVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 328 ~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
-..+|.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345555555566666655555554
No 425
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=50.36 E-value=65 Score=22.62 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=24.2
Q ss_pred hcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhH
Q 012101 168 KAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKE 205 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 205 (471)
.....+++.++++.++.++..+|..+..++-..|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 34456667777777777777777777666666655433
No 426
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=1.8e+02 Score=25.37 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=73.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH-HHHHhcCCH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTF-VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV-DLLGRAGLL 377 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~ 377 (471)
|....+++.|...|.+... +.|+..+| ..=+.++.+.++++.+.+--.... .+.||..--..+. ..+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4455678889997777765 46776544 445566777888888877776665 4577765444333 445566677
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 378 EEARAMVEGM-------PMKANVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 378 ~~A~~~~~~m-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
++|...+.+. ++.|-...+..|..+--..=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 7777777665 4555566777776655554455555555443
No 427
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.48 E-value=38 Score=28.99 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
..+.++.+.|.+++.+. ...| ....|-.+...--+.|+++.|.+.+++..+++|++..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34556666666666666 4444 3446666666666667777777777777666665543
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=48.11 E-value=24 Score=27.17 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=25.7
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...|.-.+|..+|.+|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456678899999999999999985 66666543
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.63 E-value=95 Score=24.53 Aligned_cols=60 Identities=15% Similarity=-0.048 Sum_probs=25.2
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcC
Q 012101 110 IFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAG 170 (471)
Q Consensus 110 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 170 (471)
+.+++.|++++.. -..++..+.+.++.-.|..+++.+.+.+...+..|--.-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3334444443322 22334444444444555555555555443333322222334444444
No 430
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.46 E-value=2.8e+02 Score=27.00 Aligned_cols=363 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHhCC--CchHHHHHHHHHHHCCCCCCcchHHHHHHH---HhccCCchHHHHHHHHHHHhCCCCCcc------hHH
Q 012101 92 IIRLYTRLE--APKKALDIYIFMSRAGVLPDCYTLPIVLKA---SCQLFALEIGRQLHSLAVRLGLESNEF------CES 160 (471)
Q Consensus 92 li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 160 (471)
+...+...| ++.++++.++..-...++.-...-+.+=-+ +.-..+++.|+.-+++.....-+...+ +++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-ChhhHHHHhccCC--CCCcchHHH-----HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 012101 161 GFISLYSKAG-DFEKARKVFDENP--ERKLGSWNA-----IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSAC 232 (471)
Q Consensus 161 ~ll~~~~~~g-~~~~a~~~~~~~~--~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 232 (471)
.|...|.... .+..+..++++.. ..+++.|.. |+..+.-..++..|.+++.---+.. .+-..+|..++...
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftl 171 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFTL 171 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHHH
Q ss_pred cC------cCCHHHHHHHHHHHHHhhcCCCCC--------hhHHHHHHHHHHhcCChHHHHHHHHhcCC-----------
Q 012101 233 GS------LGDLELALQVHKYVFQVKSKQKSD--------TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----------- 287 (471)
Q Consensus 233 ~~------~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 287 (471)
.+ ..+...+.++...+.++-....+| +...+.-+.-|.-.|+...+...++++.+
T Consensus 172 s~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~ 251 (629)
T KOG2300|consen 172 SMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRG 251 (629)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCC
Q ss_pred --------------------------CCHhhHHHHHHHHHhC--CChhHHHHHHHHHHHcC-CCC-----CHHHHHHHHH
Q 012101 288 --------------------------PNVSSWTSMIVGYAAN--GLANEALDCFHYMRESG-IRP-----NHVTFVGVLS 333 (471)
Q Consensus 288 --------------------------~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~-~~p-----~~~~~~~ll~ 333 (471)
--...-..+..+|.+. +--|+++...++..+.. +.| ...+...++-
T Consensus 252 h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~ 331 (629)
T KOG2300|consen 252 HDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVM 331 (629)
T ss_pred ccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q ss_pred HhccCCcHHHHHHHHHHhHHhcCCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQIEPR--------FAHYGCMVDLLGRAGLLEEARAMVEGM-----PMKANVVIWGCLM 400 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~l~ 400 (471)
+=.-.|++.+|++-...|.+-+.-.|. ...-..+..-++..+.++.|+.-|... ...--...-..+.
T Consensus 332 c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 332 CRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLA 411 (629)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDG-------AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
..|.+.|+-+.-.++++.+--.+..+.. ++...+-.....|++.||...+.+-.+
T Consensus 412 i~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 431
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.18 E-value=4.1e+02 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHhcCCC
Q 012101 261 MLNSLIDMYGKCG--RMDLAYKVFWEIDQP 288 (471)
Q Consensus 261 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~~ 288 (471)
....++.+|.+.+ ++++|+....++.+.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 4455666777666 667777766666543
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.15 E-value=1.1e+02 Score=24.19 Aligned_cols=66 Identities=14% Similarity=-0.034 Sum_probs=45.3
Q ss_pred hHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 012101 70 IYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA 136 (471)
Q Consensus 70 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 136 (471)
..++...+++-+.+.+ ..-..++..+.+.++.-.|.++++++.+.+...+..|.-..++.+...|-
T Consensus 5 ~~~~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3556666666655433 45677888888888888999999999988766665555555555555543
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.69 E-value=4.1e+02 Score=28.73 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHhccCCcHH
Q 012101 324 NHVTFVGVLSACVHGGKVQ 342 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~ 342 (471)
|...-...+.++...|..+
T Consensus 788 d~~VR~aA~~aLg~~g~~~ 806 (897)
T PRK13800 788 DPLVRAAALAALAELGCPP 806 (897)
T ss_pred CHHHHHHHHHHHHhcCCcc
Confidence 4444444445555444433
No 434
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.67 E-value=1.2e+02 Score=22.52 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=21.4
Q ss_pred HHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESG 320 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 320 (471)
.+.+.|+|++|...=.....||...|-++ +-.+.|-.+++...+.++..+|
T Consensus 49 sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 49 SLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 34455555555222222223555555443 2234555555555555554443
No 435
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.73 E-value=36 Score=34.19 Aligned_cols=59 Identities=17% Similarity=0.190 Sum_probs=20.6
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhc
Q 012101 120 DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFD 180 (471)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 180 (471)
+...-.-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+...+..+-+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~ 462 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIAD 462 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444455555555555555555554433211 11234444455555555554444433
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.65 E-value=17 Score=32.96 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=76.7
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVV-IWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~l~~~~~~~~~~~~a~ 413 (471)
...|.++.|++.|....+.. .+....|..=..++.+.+++..|.+=+... .+.||.. -|-.=-.+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 45678888888888876431 233344555556777888888888777766 6666653 3433344556778888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 414 WVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
..+....+++.+ ..+-..+-.+.-+.+..++-...+++.++.
T Consensus 203 ~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 888888888763 334445555566666666665555555444
No 437
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.21 E-value=1.5e+02 Score=23.38 Aligned_cols=77 Identities=10% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGL-ANEALDCFHYMRESGIRPNHVTFVGV 331 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 331 (471)
.|.++.-....+++.....+++.+.. .+...|.+++.+..+..- ---+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555555555555555544421 334456666666654444 23345566666665566666666666
Q ss_pred HHHhccC
Q 012101 332 LSACVHG 338 (471)
Q Consensus 332 l~~~~~~ 338 (471)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665543
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.05 E-value=2.2e+02 Score=25.18 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=44.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH-HHHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV-VLSNIY 437 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~ 437 (471)
-++.....+...|.+.|++.+|+..|-.-+ .|+...+..++..+...|...+. ..|. ..+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA---------------DLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H---------------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch---------------hHHHHHHHHHH
Confidence 345667778888888888888887665442 22333332233333333332222 2232 344456
Q ss_pred HcCCChHHHHHHHHHhhcC
Q 012101 438 ASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~ 456 (471)
...|+...|.+.+....+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 6778888888887777654
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.82 E-value=2.8e+02 Score=26.26 Aligned_cols=56 Identities=7% Similarity=-0.147 Sum_probs=36.9
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHh--ccCCchHHHHHHHHHHHh
Q 012101 94 RLYTRLEAPKKALDIYIFMSRAGVLPDCY--TLPIVLKASC--QLFALEIGRQLHSLAVRL 150 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 150 (471)
..+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445788888888888888876 555554 3444444443 344667888888876654
No 440
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=44.77 E-value=1.5e+02 Score=23.15 Aligned_cols=69 Identities=16% Similarity=0.086 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHhccCC---cHHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 322 RPNHVTFVGVLSACVHGG---KVQEGKHFFEMMKNVYQIEPR--FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
.++..+--.+..++.+.. +..+.+.+++++.+. . .|+ ....-.|.-++.+.++++++.++.+.+ ...||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 555555555666666554 456677788877652 1 222 222334556777888888888877776 44443
No 441
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.50 E-value=1.9e+02 Score=24.19 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=56.2
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC
Q 012101 175 ARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK 254 (471)
Q Consensus 175 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 254 (471)
|+.+..+-+++-.+.|.....+-++.-+.+++-+.+-- ..-.+++..|.+..+|.++.++++.+.+.+-.
T Consensus 95 a~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ 164 (233)
T PF14669_consen 95 AEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIH 164 (233)
T ss_pred HHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555555677777777776666665443311 12235666777888888888888877332211
Q ss_pred ------------CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012101 255 ------------QKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 255 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
..+.-.+.|.....+.++|..|.|..+++
T Consensus 165 ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 165 FTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred hhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 11223344555555566666666665555
No 442
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=43.78 E-value=2.3e+02 Score=25.04 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----c--hHHHHHHH
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD-----G--AYVVLSNI 436 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~--~~~~l~~~ 436 (471)
|..++-.|.|.-....-..+|...| .|. .++.-|.+.|+++.|-.++--+...+..+. . .-..++..
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~ 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH
Confidence 3344444555545555555666554 332 466777788888888777776665553332 1 22245666
Q ss_pred HHcCCChHHHHHHHHHhhcCC
Q 012101 437 YASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~ 457 (471)
....|+|+-+.++.+=+..-+
T Consensus 230 a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 230 ALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHhcccHHHHHHHHHHHHHhC
Confidence 677788888888777665543
No 443
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.28 E-value=36 Score=35.11 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=23.7
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 373 RAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.+|+++.|++.-...+ |..+|..|.......|+.+-|+..+++.+.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4555555555444443 444555555555555555555555554443
No 444
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=43.07 E-value=2e+02 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.4
Q ss_pred HcCCChHHHHHHHHHhhc
Q 012101 438 ASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~ 455 (471)
.+.|++++|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 466788888888877753
No 445
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=42.96 E-value=2.7e+02 Score=25.67 Aligned_cols=87 Identities=9% Similarity=0.059 Sum_probs=46.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANE-ALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQE 343 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 343 (471)
+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+.+.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 45566666666655555555554333333344433333332222 33344444433 788888888888777666555
Q ss_pred HHHHHHHhHHh
Q 012101 344 GKHFFEMMKNV 354 (471)
Q Consensus 344 a~~~~~~~~~~ 354 (471)
....+..+...
T Consensus 249 ~~~~i~~~L~~ 259 (340)
T PF12069_consen 249 VAILIDALLQS 259 (340)
T ss_pred HHHHHHHHhcC
Confidence 55545555443
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=1.6e+02 Score=26.30 Aligned_cols=99 Identities=12% Similarity=-0.025 Sum_probs=51.3
Q ss_pred CChhHHHHHHHHH-HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCchH--
Q 012101 359 PRFAHYGCMVDLL-GRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQEL----EPWSDGAY-- 430 (471)
Q Consensus 359 p~~~~~~~li~~~-~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~-- 430 (471)
.|...++.|+.-- .+...++++.+-.++- |-.--...+..+...|++.+|.+.+.+.+++..+. +..-+..+
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~k 158 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCK 158 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHH
Confidence 3444455554321 1122233333333333 33345568888899999999999998888776553 22111111
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 431 VVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
..|+..|....-.++-++..+.|.++|
T Consensus 159 iRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 159 IRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 123333444444455555555555544
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.75 E-value=3e+02 Score=26.07 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCCC------CcchHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPER------KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC 216 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 216 (471)
.+.-+.+.|..+|+++.|.+.|-+...- -+..|-.+|..-.-.|+|.....+..+....
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4566778899999999999999885421 2225777777777788888887777766543
No 448
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.55 E-value=1.8e+02 Score=27.78 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 388 PMKANV--VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 388 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
.++|.. .++..-+..+.+.+++..|..+.+++.+++|.+
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 666643 367788888999999999999999999998754
No 449
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.55 E-value=1.1e+02 Score=26.80 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=10.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 012101 367 MVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m 387 (471)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555554
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.43 E-value=1.7e+02 Score=27.88 Aligned_cols=57 Identities=9% Similarity=-0.057 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 365 GCMVDLLGRAGLLEEARAMVEGMP---------MKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m~---------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
-.|++.++-.|++..|+++++.+. +.+ ...++-.+.-+|.-.+++..|.+.|....-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777777761 111 334556666667777777777777766543
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.78 E-value=1.1e+02 Score=24.06 Aligned_cols=62 Identities=19% Similarity=0.060 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 377 LEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 377 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
-+.|.++.+-|| .....-.........|++..|.++.+.+...+|.+...-....++|...|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 355666777774 23334445556778899999999999999999988777777777766544
No 452
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=41.69 E-value=1.5e+02 Score=25.08 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=52.1
Q ss_pred HHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCCC--CCchHHHHHH
Q 012101 377 LEEARAMVEGMPM----------KANVVIWGCLMGACEKFG---------NVKMGEWVAKHLQELEPW--SDGAYVVLSN 435 (471)
Q Consensus 377 ~~~A~~~~~~m~~----------~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 435 (471)
.+.|..++..||. -....-|..+..+|.+.| +.+...++++...+.+.+ -|..|..+++
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 4566666666621 114456777777777776 456667777777776632 4567888887
Q ss_pred HHHcCCChHHHHHHHHHhh
Q 012101 436 IYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~ 454 (471)
--.-.-+.++..+++..++
T Consensus 217 k~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccCCCCHHHHHHHHHHhh
Confidence 6666667888888887765
No 453
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.68 E-value=1.4e+02 Score=30.10 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=44.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhccCCcHHH------HHHHHHHhHHhcCCCCChhHHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRES--GIRPNHVTFVGVLSACVHGGKVQE------GKHFFEMMKNVYQIEPRFAHYGC 366 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~------a~~~~~~~~~~~~~~p~~~~~~~ 366 (471)
+++.+|..+|++-++.++++..... |-+.-...++..|+...+.|.++- |.+.++.. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777888888888888888777654 222223456677777777776532 33333332 34566667766
Q ss_pred HHHHH
Q 012101 367 MVDLL 371 (471)
Q Consensus 367 li~~~ 371 (471)
|+++-
T Consensus 109 l~~~s 113 (1117)
T COG5108 109 LCQAS 113 (1117)
T ss_pred HHHhh
Confidence 66553
No 454
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.58 E-value=1.4e+02 Score=24.39 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF 135 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 135 (471)
.++..+...++.-.|.++++.+.+.+...+..|.-..|..+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444444445555555555444444444333344443333
No 455
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.49 E-value=3.2e+02 Score=25.94 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC------CCHhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ------PNVSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
.+.-+.+.|..+|+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 344455566666666666666665432 122334444444444555555555554443
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.98 E-value=2.2e+02 Score=23.97 Aligned_cols=117 Identities=9% Similarity=0.078 Sum_probs=60.7
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
....+.++..+...|+++.|.+.|.-+.... ..|.. .|..=+..+.+.+.-....+.+ +.++
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl----------------~~l~ 103 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFL----------------EWLI 103 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHH----------------HHHH
Confidence 3456778888899999999999999888653 33433 2333333344433333333333 3444
Q ss_pred HHHHhcCCHHHHH------HHHHhC--CCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 369 DLLGRAGLLEEAR------AMVEGM--PMKANV---VIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 369 ~~~~~~g~~~~A~------~~~~~m--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
..|.......... -+|+.- ...|.. ..|..++..-.+....+++.++.+++.++-
T Consensus 104 ~~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elv 169 (199)
T PF04090_consen 104 SFYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELV 169 (199)
T ss_pred HHHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4444322222211 122222 112321 124444444444445667888888887765
No 457
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.65 E-value=2.9e+02 Score=25.03 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC
Q 012101 105 ALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE 184 (471)
Q Consensus 105 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 184 (471)
|.++|+... .....+.++..+.+.+.-+.-.++| ||+..+-......+...|--+-..-.=.++..
T Consensus 186 ~~~lFk~~~------~Ek~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~ 251 (412)
T KOG2297|consen 186 AVKLFKEWL------VEKDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE 251 (412)
T ss_pred HHHHHHHHH------hhccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred CCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH
Q 012101 185 RKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN 263 (471)
Q Consensus 185 ~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 263 (471)
.... .-..|..-..+...+++.....++-.+..--|+......+=.+.....+|.+-+++ .....-.....|.
T Consensus 252 ~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeel------va~qalrhlK~ya 325 (412)
T KOG2297|consen 252 GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEEL------VAEQALRHLKQYA 325 (412)
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHH------HHHHHHHHHHhhh
Q ss_pred HHHHHHHhcCChHHHH---------------HHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 264 SLIDMYGKCGRMDLAY---------------KVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~---------------~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
-|+.+++..|+.+-.. +.|.++.. .++.+=..++.-|-.......-...++.|..
T Consensus 326 PLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 326 PLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 458
>PRK10941 hypothetical protein; Provisional
Probab=39.45 E-value=2.8e+02 Score=24.73 Aligned_cols=75 Identities=5% Similarity=-0.083 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
+.+-.+|.+.++++.|+.+.+.+..- .|+ ..-+.--.-.|.+.|.+..|..-++...+...-.|+.......+..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 44555666666666666666666654 333 3333333334566666666666666665554444555444444443
No 459
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=39.41 E-value=1.1e+02 Score=21.72 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=22.0
Q ss_pred cCChhhHHHHhccCCCCCcchHHHHHHHHHcCCC
Q 012101 169 AGDFEKARKVFDENPERKLGSWNAIIAGLSQDGR 202 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 202 (471)
.-..+++.++++.++.++..+|..+..++-..+.
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3455667777777777777777777776655443
No 460
>PRK09857 putative transposase; Provisional
Probab=39.26 E-value=2.2e+02 Score=25.75 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..++....+.++.++..++++.+.+..+.......++++-+.+.|.-+++.++.++|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444455666666666666666554444445556666676667777778888888777765
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.53 E-value=3.1e+02 Score=24.94 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 208 DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
++++.|.+.++.|.-..|..+.-.+.+.=.+..+..+++.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 44455555555555555554444444444555555555554
No 462
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.50 E-value=2.9e+02 Score=24.73 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-------PMKANVVIWGCLM-GACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 419 (471)
.++..+.+.|.+.+|+.+.+.. ..+|+..+...+= .+|....++.++..-+-.+
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 5677778888888887765543 4455544433332 3455555555555444433
No 463
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.29 E-value=27 Score=26.90 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.9
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 012101 97 TRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKAS 131 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (471)
...|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667899999999999988774 66666544
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.14 E-value=1.2e+02 Score=26.63 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=9.8
Q ss_pred HHHHHhCCCchHHHHHHH
Q 012101 93 IRLYTRLEAPKKALDIYI 110 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~ 110 (471)
+++|...|++..|++-|+
T Consensus 17 ~rl~l~~~~~~~Av~q~~ 34 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFR 34 (247)
T ss_pred HHHHHhCCCHHHHHHHHH
Confidence 455555555555555443
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=38.02 E-value=78 Score=23.59 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=24.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA 136 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 136 (471)
++..+...+..-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444444555555666666666665555555554445555554443
No 466
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=37.98 E-value=4.5e+02 Score=26.76 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=18.0
Q ss_pred ChhhHHHHhccCCCC--CcchHHHHHHHHHcCCChhHHHHHHHHHH
Q 012101 171 DFEKARKVFDENPER--KLGSWNAIIAGLSQDGRAKEAIDMFIGLK 214 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 214 (471)
+.++-.++++++... ....++.++.+....|-...+.-+.+.+.
T Consensus 360 ~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~ 405 (618)
T PF01347_consen 360 SYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIK 405 (618)
T ss_dssp -HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444443333 33345555555555554444433333333
No 467
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.31 E-value=29 Score=33.03 Aligned_cols=94 Identities=10% Similarity=0.017 Sum_probs=67.7
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHH-HHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcC
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCM-VDLLGRAGLLEEARAMVEGM-PMKANV-VIWGCLMGACEKFG 407 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~l~~~~~~~~ 407 (471)
-+..+.+.+.++.|..++.++.+. .||...|-.. ..++.+.+++..|+.=+... ...|+. ..|..=..+|.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 345566778999999999999754 7876554332 36788889988887766555 666643 34444456677778
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 012101 408 NVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+.+|...|+......|.++
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcH
Confidence 88889999998888888765
No 468
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=36.70 E-value=2e+02 Score=22.16 Aligned_cols=93 Identities=8% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHH----HHh-------ccCCchHHHHHHHHHHHhCCCCCcc
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLK----ASC-------QLFALEIGRQLHSLAVRLGLESNEF 157 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~----~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~ 157 (471)
+...++.+....-.-.++++..++....-.|.... +..+. .|- +.+...-.-.++..+.+.++.....
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl-~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~ 99 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFL-HMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVED 99 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHH-HHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHH
Confidence 44455555555555555666666655443333222 22222 222 1122233444555566666544444
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
.+.-+=..|.+-.+..+|..+|+-+
T Consensus 100 l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 100 LFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHhhHHHHHHHHccHHHHHHHHHHH
Confidence 5555555555666666666666543
No 469
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=36.57 E-value=3.2e+02 Score=24.58 Aligned_cols=61 Identities=7% Similarity=0.001 Sum_probs=28.0
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 356 QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--P--MKANVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+-.++..+...++..++..+++.+-.++++.. . ..-|...|..+|..-...||..-...+.
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 33444444444555555555555555554444 1 1124444555555555555544444333
No 470
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.57 E-value=3e+02 Score=23.96 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 012101 279 YKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 326 (471)
+.+|+-..+|.+.....++..|. .+++++|.+.+.++-+.|..|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 34444455577766666666543 467888888888888888777543
No 471
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.03 E-value=3e+02 Score=23.76 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=31.3
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACE 404 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~ 404 (471)
++.++...|+.+.|..+++...- .-.+......++.. ..++.+.+|..+-+...-.-....+..++..+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444545666666666655521 11111122222222 445666666665555522212334555555444
No 472
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=34.99 E-value=6.2e+02 Score=27.49 Aligned_cols=110 Identities=15% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCC--cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGG--KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGAC 403 (471)
Q Consensus 327 ~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~ 403 (471)
-+..+|.+|.+.+ +++.|+.....+++. +.......+...+- +-++.++|+.. |.. |.. -+++-|-
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~Y-Dl~--Lal~VAq 882 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE-----DPESAEEALKYLCF---LVDVNKLYDVALGTY-DLE--LALMVAQ 882 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----ChHHHHHHHhHhee---eccHHHHHHHHhhhc-CHH--HHHHHHH
Confidence 3456777787777 788888888888643 11111111111111 11122222222 111 111 1233344
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
..+.|+++=+-+++++.++.+.. . ...++ ...++|++|++-+.+
T Consensus 883 ~SQkDPKEYLPfL~~L~~l~~~~-r--ry~ID--~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 883 QSQKDPKEYLPFLQELQKLPPLY-R--RYKID--DHLKRYEKALRHLSA 926 (928)
T ss_pred HhccChHHHHHHHHHHHhCChhh-e--eeeHh--hhhCCHHHHHHHHHh
Confidence 56678888888888888876521 1 11222 244688888877654
No 473
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.95 E-value=2.1e+02 Score=26.29 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=18.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV 446 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 446 (471)
...|++..++.=..+.....|.+...|..=..++....++++|
T Consensus 130 ~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a 172 (390)
T KOG0551|consen 130 LYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEA 172 (390)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHH
Confidence 3344444444444444444444444444333343333343333
No 474
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=34.54 E-value=1.2e+02 Score=19.05 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=18.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVT 224 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 224 (471)
+.-++.+.|++++|.+..+.+.+. .|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHH
Confidence 445667777777777777777765 555443
No 475
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.47 E-value=1.7e+02 Score=20.71 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=33.0
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 012101 107 DIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR 149 (471)
Q Consensus 107 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (471)
++|+-....|+..|...|..+++...-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7788778888888888888888777666667777777777754
No 476
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=34.28 E-value=1.5e+02 Score=20.11 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC--------------CChHHHHHHHHHhhcC
Q 012101 408 NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR--------------GLWEEVERIRAVMKHR 456 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~ 456 (471)
+.+.|..++..+..-....|..|+++...+.+. |....|.+-|++|...
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcCC
Confidence 445555555555554444555555555554332 3455666667666544
No 477
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=34.07 E-value=4.1e+02 Score=28.34 Aligned_cols=197 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 012101 141 RQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 220 (471)
.+-|.++.+..........+.++.-..+.++.+...-+.+.-...+......-+...+..|+.+ +++.+.+.|..|
T Consensus 476 ~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~~~~~L~~Aa~~g~~~----~l~~Ll~~G~d~ 551 (823)
T PLN03192 476 TSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAA----LLEELLKAKLDP 551 (823)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCccchhHHHHHHHcCCHH----HHHHHHHCCCCC
Q ss_pred CHHHHH--HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHH
Q 012101 221 DDVTMV--SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIV 298 (471)
Q Consensus 221 ~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 298 (471)
|..... +.+...+..|..+-+.-+++ ...++......-++-+...+..|+.+-+.-+++.-...+...-...+.
T Consensus 552 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~ 627 (823)
T PLN03192 552 DIGDSKGRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLC 627 (823)
T ss_pred CCCCCCCCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHH
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhccCCcHHHHHHHHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFV--GVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~ 349 (471)
..+..|+.+-+..++ +.|..+|..... +.+...+..|..+-+.-+++
T Consensus 628 ~Aa~~g~~~~v~~Ll----~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~ 676 (823)
T PLN03192 628 TAAKRNDLTAMKELL----KQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM 676 (823)
T ss_pred HHHHhCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
No 478
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.61 E-value=5.4e+02 Score=26.32 Aligned_cols=49 Identities=24% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
+++.+|...|++-.+.++++.......|-..-...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4455555555555555555544222222222233444444444454443
No 479
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.46 E-value=4.4e+02 Score=25.27 Aligned_cols=233 Identities=13% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDF 172 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 172 (471)
|+++...| ..++..+-..... .++...+.....++....+...+..+.+.+. .++..+......++.+.++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~--d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE--ADEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh--CCChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Q ss_pred hhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh
Q 012101 173 EKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVK 252 (471)
Q Consensus 173 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 252 (471)
+-...+...+...+...-...+.++...+ ..+...+....+ .+|...-...+.++...++.+....+....
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~--~~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al---- 187 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHR--HDPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYL---- 187 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhc--cChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHH----
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-cCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWE-IDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGV 331 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 331 (471)
...|..+-..-+.+....|. +.|...+.. ..+++....-.+.......|.. ++...+..+.+... +-...
T Consensus 188 --~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d~~-----vr~~a 258 (410)
T TIGR02270 188 --RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQAAA-----TRREA 258 (410)
T ss_pred --cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhcChh-----hHHHH
Q ss_pred HHHhccCCcHHHHHHHHHHh
Q 012101 332 LSACVHGGKVQEGKHFFEMM 351 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~ 351 (471)
+.++.+.|+...+.-+.+.|
T Consensus 259 ~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHcCCcchHHHHHHHh
No 480
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.10 E-value=74 Score=21.03 Aligned_cols=45 Identities=13% Similarity=-0.021 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHh
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASC 132 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 132 (471)
..++.++..+++..-.+.++..+.+..+.|. .+..+|.--++.++
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4555555555555555555555555555553 23344443333333
No 481
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=32.97 E-value=38 Score=22.23 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=15.0
Q ss_pred CCchHHHHHHHHHHHCC-CCCCc
Q 012101 100 EAPKKALDIYIFMSRAG-VLPDC 121 (471)
Q Consensus 100 g~~~~A~~~~~~m~~~g-~~p~~ 121 (471)
=+++.|+..|.++...| ++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 36778888888887654 55543
No 482
>COG0819 TenA Putative transcription activator [Transcription]
Probab=31.99 E-value=3.3e+02 Score=23.36 Aligned_cols=54 Identities=6% Similarity=-0.159 Sum_probs=34.7
Q ss_pred CCCCchhhHHHHHHHHHhCCCchHHHH-----------HHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 81 HSYSAAFHWNNIIRLYTRLEAPKKALD-----------IYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 81 ~~~~~~~~~~~li~~~~~~g~~~~A~~-----------~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
...|...+|...|-..+..|++.+.+. +.+++.+.+..+....|...++.|+..
T Consensus 104 ~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ 168 (218)
T COG0819 104 EPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASE 168 (218)
T ss_pred CCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCH
Confidence 334677888888888888888766442 223333333334566788888877765
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.77 E-value=1.5e+02 Score=24.12 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=31.4
Q ss_pred HHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 012101 213 LKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMD 276 (471)
Q Consensus 213 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 276 (471)
++..|++++..-. .++..+...++.-.|.++++.+ .+.+...+..|.-.-++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L--~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLL--REAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHH--HhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445555544332 3333333334455666666666 55555555555444555666655543
No 484
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.69 E-value=1.4e+02 Score=28.39 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=72.0
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcC-C---CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ-I---EP--RFAHYGCMVDLLGRAGLLEEARAMVEGMP--MKANVVIWG 397 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~ 397 (471)
++...|++.++-.||+..|.++++.+.-..+ + .| .+.++-.+.=+|.-.+++.+|.+.|...- +.-.. +
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k---~ 199 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK---N 199 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---h
Confidence 4566778888999999999999988732111 0 01 12344455667788899999999998761 00000 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-------HhcCCC--CCchHHHHHHHH------HcCCChHHHHHHHHHhhcCCCcc
Q 012101 398 CLMGACEKFGNVKMGEWVAKHL-------QELEPW--SDGAYVVLSNIY------ASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~--~~~~~~~l~~~~------~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
....+..+.+...+.-++| ..+.|. +..+...+=+-| ...|+.+.-.++|...--+-+.+
T Consensus 200 ---~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp 274 (404)
T PF10255_consen 200 ---QYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISP 274 (404)
T ss_pred ---hhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCC
Confidence 0112333444444444444 344442 333333333333 24566777777777665554443
No 485
>PRK02287 hypothetical protein; Provisional
Probab=31.39 E-value=2.9e+02 Score=22.56 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWG-CLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
+..++.-++.-.|..+.|.++++.....++....| .++..|.+..+-++..++-++.
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~ 166 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEY 166 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34455555556666666666666654434443333 2555666555555555444443
No 486
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=30.83 E-value=31 Score=21.48 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCc
Q 012101 99 LEAPKKALDIYIFMSRAG-VLPDC 121 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g-~~p~~ 121 (471)
.-+++.|...|..+...| ++|+.
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 346778888888776655 55554
No 487
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.81 E-value=99 Score=27.81 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=34.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 372 GRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.+.|+.++|..+|+.. ...|+ ...+..+....-..+++-+|-+++-++....|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4567777777777766 55553 334444444444556666777777766666665543
No 488
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.41 E-value=4.5e+02 Score=24.46 Aligned_cols=89 Identities=8% Similarity=-0.000 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH--HHHH---
Q 012101 365 GCMVDLLGRAGLLEEARAMVEGMPMK--ANVVIWGCL--MGACEKFGNVKMGEWVAKHLQELEPWSDGAYV--VLSN--- 435 (471)
Q Consensus 365 ~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~l~~--- 435 (471)
..+++.+.++|.++.|..+.+++.+. .|...|... +.--...|+++.|+...++=...=....+... .-+.
T Consensus 120 r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefI 199 (389)
T KOG0396|consen 120 RFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFI 199 (389)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHH
Confidence 34555666777777777777666433 122222211 22223455566665555443221111111111 1111
Q ss_pred HHHcCCChHHHHHHHHHh
Q 012101 436 IYASRGLWEEVERIRAVM 453 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m 453 (471)
-+.+.+++.+|...+++-
T Consensus 200 ELi~~~~~~~Ai~~akk~ 217 (389)
T KOG0396|consen 200 ELIKVDNYDKAIAFAKKH 217 (389)
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 234566777776665543
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.32 E-value=71 Score=24.08 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
.++..+...+.+-.|.++++.|.+.|...+..|.-.-|+.+.+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 34444444444555555555555555444444433333333333
No 490
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.27 E-value=5.4e+02 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=30.2
Q ss_pred hHHHHHHHHH-HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 307 NEALDCFHYM-RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 307 ~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
++..+.+++. ...|+..+......++.. ..|+...|+.+++.+..
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHH
Confidence 4445555554 345777777777666653 35899999999988643
No 491
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.26 E-value=5.6e+02 Score=25.48 Aligned_cols=128 Identities=10% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV---SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
++.-|.+.++.++|+.++..|.=. ......|. .+.+...+..--++.+..++.+ +..-..|....-.....-|
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~--~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~a--lgsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWN--TMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAA--LGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCcc--ccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH--HhhccCCCcCccHHHHHHH
Q ss_pred HhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
.. .=.+-|+++|..+ .+.+++++|..+--++. +...|.-+-..-...|+.+.|..
T Consensus 490 ~d-~V~~~aRRfFhhL---------------LR~~rfekAFlLAvdi~------~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 490 RD-PVSDLARRFFHHL---------------LRYQRFEKAFLLAVDIG------DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HH-HHHHHHHHHHHHH---------------HHhhHHHHHHHHHHhcc------chHHHHHHHHHHHhccchhhhhc
No 492
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.03 E-value=1.5e+02 Score=25.63 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=43.5
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
..+.++.+.+-+++.+..+- .+-....|-.+...-.+.|+.+.|.+.+++. .+.|+.
T Consensus 5 ~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678889999999988742 2334567777888888999999999998887 777653
No 493
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.42 E-value=1.4e+02 Score=22.14 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=27.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
++..+...+..-.|.++++.+.+.+..++..|.-..|..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444555556677777777776666666665555566555554
No 494
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.34 E-value=2e+02 Score=20.14 Aligned_cols=32 Identities=9% Similarity=0.096 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
+.+++.+++..+ ...|. ..|..+.+++...|.
T Consensus 45 r~~q~~~LLd~L--~~RG~----~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDL--ETRGK----QAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHH--HhcCH----HHHHHHHHHHHhcCc
Confidence 344444444444 44442 234444444444443
No 495
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.26 E-value=1.7e+02 Score=19.11 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHhC
Q 012101 373 RAGLLEEARAMVEGM 387 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m 387 (471)
..|++-+|-++++.+
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 455555555555555
No 496
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.90 E-value=98 Score=21.05 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=20.7
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 012101 97 TRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKAS 131 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (471)
.-.|+.+.+.+++++....|..|.......+..+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33567777777777777766665555444444433
No 497
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.63 E-value=3.3e+02 Score=23.88 Aligned_cols=99 Identities=9% Similarity=-0.044 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCHHHH-----------HHHHHHhccCCcHHHHHHHHHHhHHhc
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRES------GIRPNHVTF-----------VGVLSACVHGGKVQEGKHFFEMMKNVY 355 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~-----------~~ll~~~~~~~~~~~a~~~~~~~~~~~ 355 (471)
...-.+-+.+.|++.+|..-|.+.... .-+|-..-| ...-+++...|++-++++...++...+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 333445577888999999988888742 123332222 222234455677777888777776542
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 356 QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 356 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
+-++..|-.-..+.+..=+.++|..-|... ...|..
T Consensus 261 --~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 261 --PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred --CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 334445544444555555666777666665 555543
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.42 E-value=1.2e+02 Score=20.05 Aligned_cols=49 Identities=6% Similarity=-0.077 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
|....++.++..+++..-.+.++..+.++.+.+..+...|.--+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666665444455544444443
No 499
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=28.37 E-value=4.2e+02 Score=23.45 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=80.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc-----hHHHHHHHHHHHhCCCCCcchHHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL-----EIGRQLHSLAVRLGLESNEFCESGF 162 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l 162 (471)
-.+.+|+.+.+.|....|+.+.+.+... +-=......++......... ......+....+.- .. ...|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHHH
Confidence 3566888888888888888888877542 21223333333332222111 11122222222210 11 1224444
Q ss_pred HHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CC-----CHHHHHHHHHHHcCcC
Q 012101 163 ISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGF-EP-----DDVTMVSVTSACGSLG 236 (471)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p-----~~~~~~~li~~~~~~~ 236 (471)
+..|+|.=+...-..+|+....| ..|+..|.+.|+.+.|-.++--+...+- .. +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 55555555555556666655322 3567777778888887777666654331 11 2233335555666667
Q ss_pred CHHHHHHHHHHH
Q 012101 237 DLELALQVHKYV 248 (471)
Q Consensus 237 ~~~~a~~~~~~~ 248 (471)
+|+.+.++.+-+
T Consensus 235 ~w~Lc~eL~RFL 246 (258)
T PF07064_consen 235 DWDLCFELVRFL 246 (258)
T ss_pred cHHHHHHHHHHH
Confidence 777777776655
No 500
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.16 E-value=2.1e+02 Score=25.78 Aligned_cols=115 Identities=13% Similarity=-0.036 Sum_probs=0.0
Q ss_pred HHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC
Q 012101 57 QLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA 136 (471)
Q Consensus 57 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 136 (471)
++....+ ..++......++.+. .+..-..-++.+...|++..|+++..+..+.=-.-...+...=+..-.+.-.
T Consensus 104 Il~~~rk---r~~l~~ll~~L~~i~---~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~ 177 (291)
T PF10475_consen 104 ILRLQRK---RQNLKKLLEKLEQIK---TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETL 177 (291)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHH
Q ss_pred chHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHH
Q 012101 137 LEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARK 177 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 177 (471)
..-...+=..+.+.-..-|+..|..+..+|.-.|+.+.+.+
T Consensus 178 ~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 178 ELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Done!