Query 012101
Match_columns 471
No_of_seqs 557 out of 2864
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 21:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.1E-39 2.1E-43 320.5 32.4 429 18-460 87-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-35 3.5E-40 297.1 30.7 377 67-456 66-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 3.8E-30 1.3E-34 247.3 22.8 183 189-374 28-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 1.1E-30 3.8E-35 250.9 18.3 212 103-338 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 3.5E-27 1.2E-31 222.5 37.7 367 67-442 12-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4E-27 1.4E-31 222.0 35.0 359 92-459 5-371 (388)
7 2gw1_A Mitochondrial precursor 99.9 3.4E-24 1.2E-28 209.6 31.7 395 53-459 8-481 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 8E-23 2.7E-27 196.4 31.9 318 84-434 24-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 9.7E-23 3.3E-27 199.2 29.5 401 20-433 11-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.9E-21 6.4E-26 191.3 33.1 390 53-458 27-493 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.4E-21 4.7E-26 187.8 29.1 308 120-459 25-361 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.1E-21 2.1E-25 187.6 21.2 367 85-459 24-460 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3.1E-19 1.1E-23 165.7 28.2 322 85-438 2-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5E-19 1.7E-23 164.2 27.2 307 121-459 3-338 (359)
15 3hym_B Cell division cycle pro 99.8 1.4E-18 4.6E-23 159.4 26.4 281 158-443 24-321 (330)
16 3hym_B Cell division cycle pro 99.8 1.8E-17 6.2E-22 151.9 31.1 287 85-410 21-322 (330)
17 2xm6_A Protein corresponding t 99.8 6.8E-17 2.3E-21 156.8 36.6 352 83-457 36-433 (490)
18 1b89_A Protein (clathrin heavy 99.8 9.7E-19 3.3E-23 160.6 22.0 287 67-387 16-308 (449)
19 2ooe_A Cleavage stimulation fa 99.8 1.7E-16 6E-21 155.5 36.5 398 47-458 9-494 (530)
20 1fch_A Peroxisomal targeting s 99.8 6E-18 2E-22 157.8 22.8 280 168-453 37-356 (368)
21 2xm6_A Protein corresponding t 99.8 3.8E-16 1.3E-20 151.5 36.2 369 48-438 37-451 (490)
22 4eqf_A PEX5-related protein; a 99.8 6.9E-18 2.3E-22 157.3 21.3 261 186-452 64-352 (365)
23 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.8E-21 143.6 28.1 271 164-450 7-288 (291)
24 4g1t_A Interferon-induced prot 99.8 1.4E-16 4.8E-21 153.9 28.6 366 86-468 51-471 (472)
25 1fch_A Peroxisomal targeting s 99.8 2.5E-17 8.4E-22 153.6 20.9 294 99-419 38-356 (368)
26 1b89_A Protein (clathrin heavy 99.8 6.9E-19 2.4E-23 161.6 9.7 281 133-449 15-304 (449)
27 2ooe_A Cleavage stimulation fa 99.8 1.9E-15 6.5E-20 148.1 34.4 368 84-458 11-456 (530)
28 3cv0_A Peroxisome targeting si 99.8 6.4E-17 2.2E-21 148.0 21.3 261 188-455 22-314 (327)
29 4eqf_A PEX5-related protein; a 99.8 1.3E-16 4.5E-21 148.6 22.4 258 123-386 67-352 (365)
30 3mkr_A Coatomer subunit epsilo 99.7 1.7E-16 5.7E-21 142.5 21.4 249 194-459 6-267 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-18 5.7E-23 171.5 6.8 165 255-420 123-308 (1134)
32 3cv0_A Peroxisome targeting si 99.7 1.7E-15 5.9E-20 138.4 24.8 275 85-387 20-312 (327)
33 1xi4_A Clathrin heavy chain; a 99.7 8.1E-14 2.8E-18 142.7 38.8 352 47-451 982-1340(1630)
34 1xi4_A Clathrin heavy chain; a 99.7 5.9E-14 2E-18 143.7 36.6 375 21-448 991-1376(1630)
35 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-18 2.1E-22 167.5 6.7 128 53-183 129-263 (1134)
36 4g1t_A Interferon-induced prot 99.7 7.7E-15 2.6E-19 141.6 27.8 376 38-434 39-471 (472)
37 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.4E-19 127.7 20.9 217 226-457 9-237 (258)
38 3uq3_A Heat shock protein STI1 99.6 2.2E-14 7.5E-19 126.2 21.3 235 188-434 6-254 (258)
39 2pl2_A Hypothetical conserved 99.6 2E-14 6.7E-19 123.2 19.7 195 256-454 2-212 (217)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.5E-14 1.2E-18 126.3 19.1 241 199-450 17-269 (275)
41 3u4t_A TPR repeat-containing p 99.6 1.1E-13 3.7E-18 123.0 20.4 242 192-439 8-267 (272)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 119.1 20.5 197 260-458 38-240 (252)
43 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.3E-17 115.5 21.1 197 259-457 8-212 (225)
44 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-14 1.2E-18 123.8 14.5 195 261-458 25-224 (243)
45 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-13 7.1E-18 130.4 21.0 376 57-456 9-421 (452)
46 4a1s_A PINS, partner of inscut 99.6 6.6E-14 2.3E-18 132.4 15.9 266 190-456 51-372 (411)
47 1ouv_A Conserved hypothetical 99.5 2.2E-12 7.5E-17 114.7 24.5 222 187-424 6-253 (273)
48 3e4b_A ALGK; tetratricopeptide 99.5 7.4E-13 2.5E-17 126.5 22.6 341 91-459 8-390 (452)
49 3sf4_A G-protein-signaling mod 99.5 2.7E-13 9.3E-18 127.8 19.2 269 158-426 11-340 (406)
50 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-12 4.3E-17 114.6 22.0 205 188-429 38-245 (252)
51 1ouv_A Conserved hypothetical 99.5 5.6E-12 1.9E-16 112.0 26.0 224 221-459 5-254 (273)
52 2pl2_A Hypothetical conserved 99.5 3.8E-13 1.3E-17 115.1 17.6 193 84-283 3-209 (217)
53 3ro2_A PINS homolog, G-protein 99.5 2.5E-13 8.7E-18 124.2 17.3 267 190-457 8-333 (338)
54 2q7f_A YRRB protein; TPR, prot 99.5 2.8E-13 9.5E-18 118.0 16.7 209 223-437 24-237 (243)
55 3u4t_A TPR repeat-containing p 99.5 3.4E-13 1.2E-17 119.7 17.5 234 223-462 4-256 (272)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 8.1E-14 2.8E-18 123.9 13.0 239 99-348 18-269 (275)
57 2vq2_A PILW, putative fimbrial 99.5 3E-12 1E-16 109.8 22.2 203 223-430 9-219 (225)
58 2h6f_A Protein farnesyltransfe 99.5 3.6E-12 1.2E-16 118.2 21.4 243 189-439 99-365 (382)
59 3sf4_A G-protein-signaling mod 99.5 9.6E-13 3.3E-17 124.0 17.4 282 128-410 16-364 (406)
60 2h6f_A Protein farnesyltransfe 99.5 5.6E-13 1.9E-17 123.6 14.9 231 222-459 97-351 (382)
61 3vtx_A MAMA; tetratricopeptide 99.5 6.6E-12 2.3E-16 104.3 19.7 167 289-458 4-172 (184)
62 4abn_A Tetratricopeptide repea 99.4 1.6E-12 5.5E-17 125.0 16.7 192 258-453 101-318 (474)
63 4a1s_A PINS, partner of inscut 99.4 8.9E-13 3E-17 124.6 14.1 268 123-424 50-374 (411)
64 3ulq_A Response regulator aspa 99.4 7.5E-12 2.6E-16 117.1 19.6 229 193-421 109-367 (383)
65 4e6h_A MRNA 3'-END-processing 99.4 8.6E-11 2.9E-15 116.3 27.5 411 45-462 60-576 (679)
66 3ulq_A Response regulator aspa 99.4 4.7E-12 1.6E-16 118.5 17.7 228 228-456 109-368 (383)
67 3ro2_A PINS homolog, G-protein 99.4 9.9E-12 3.4E-16 113.5 19.5 133 292-424 185-334 (338)
68 2ond_A Cleavage stimulation fa 99.4 1.7E-10 5.7E-15 104.4 26.8 218 204-427 33-275 (308)
69 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.6E-16 102.8 15.7 160 297-459 15-176 (186)
70 1hz4_A MALT regulatory protein 99.4 5.4E-10 1.9E-14 104.0 28.6 261 164-424 22-324 (373)
71 3nf1_A KLC 1, kinesin light ch 99.4 8.1E-13 2.8E-17 119.6 8.4 165 189-353 29-223 (311)
72 3vtx_A MAMA; tetratricopeptide 99.4 4.2E-11 1.4E-15 99.3 18.1 166 258-426 4-174 (184)
73 3q15_A PSP28, response regulat 99.3 1.7E-10 5.9E-15 107.6 22.4 228 193-421 107-364 (378)
74 4e6h_A MRNA 3'-END-processing 99.3 4.3E-09 1.5E-13 104.2 32.4 398 18-427 69-575 (679)
75 3nf1_A KLC 1, kinesin light ch 99.3 5.7E-12 2E-16 114.0 10.9 248 155-424 26-309 (311)
76 2ond_A Cleavage stimulation fa 99.3 8.1E-10 2.8E-14 99.9 24.7 214 239-459 33-273 (308)
77 3q15_A PSP28, response regulat 99.3 4.4E-11 1.5E-15 111.7 16.7 228 227-455 106-364 (378)
78 4abn_A Tetratricopeptide repea 99.3 8.3E-11 2.8E-15 113.0 18.2 207 203-417 84-316 (474)
79 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.1E-15 94.2 18.6 167 259-428 8-179 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.3 7.4E-11 2.5E-15 118.2 17.7 161 290-455 9-173 (723)
81 4i17_A Hypothetical protein; T 99.3 4.3E-10 1.5E-14 96.8 18.4 204 220-436 5-223 (228)
82 1hz4_A MALT regulatory protein 99.2 2.9E-09 1E-13 99.0 25.0 227 91-317 19-280 (373)
83 4i17_A Hypothetical protein; T 99.2 1.3E-10 4.3E-15 100.2 13.2 193 257-460 5-213 (228)
84 3mv2_B Coatomer subunit epsilo 99.2 4E-09 1.4E-13 92.9 20.2 240 164-427 21-287 (310)
85 3edt_B KLC 2, kinesin light ch 99.2 1.6E-10 5.6E-15 102.6 11.2 27 429-455 254-280 (283)
86 1qqe_A Vesicular transport pro 99.1 2.5E-09 8.5E-14 95.8 17.2 215 171-424 32-271 (292)
87 3edt_B KLC 2, kinesin light ch 99.1 2.6E-09 8.8E-14 94.8 16.3 199 224-422 45-281 (283)
88 3mv2_B Coatomer subunit epsilo 99.1 1E-08 3.5E-13 90.3 19.6 216 162-394 51-287 (310)
89 4gyw_A UDP-N-acetylglucosamine 99.1 1.9E-09 6.6E-14 107.9 16.4 161 258-422 8-174 (723)
90 1qqe_A Vesicular transport pro 99.1 2.6E-09 8.8E-14 95.7 15.3 204 237-457 32-270 (292)
91 2fo7_A Synthetic consensus TPR 99.1 4.4E-09 1.5E-13 81.6 14.7 126 329-456 5-132 (136)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 1.2E-08 4.2E-13 87.4 18.6 184 260-461 5-218 (225)
93 3qky_A Outer membrane assembly 99.0 7.2E-09 2.5E-13 91.1 16.6 183 262-444 18-249 (261)
94 3qky_A Outer membrane assembly 99.0 2.6E-08 8.8E-13 87.5 18.8 170 288-459 13-227 (261)
95 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.5E-13 77.5 15.9 131 292-425 3-135 (136)
96 3rjv_A Putative SEL1 repeat pr 98.9 1.2E-07 4.2E-12 80.2 18.5 162 288-458 16-199 (212)
97 2pzi_A Probable serine/threoni 98.9 4.2E-09 1.5E-13 105.8 10.8 170 233-408 402-583 (681)
98 4ga2_A E3 SUMO-protein ligase 98.9 2E-09 6.9E-14 85.8 6.8 139 300-442 7-149 (150)
99 3qou_A Protein YBBN; thioredox 98.9 3.8E-08 1.3E-12 87.8 15.6 172 279-454 106-282 (287)
100 2vsy_A XCC0866; transferase, g 98.9 2.5E-08 8.6E-13 98.3 14.1 160 272-434 2-169 (568)
101 2ifu_A Gamma-SNAP; membrane fu 98.8 1.2E-07 4.1E-12 85.4 17.3 218 200-448 4-253 (307)
102 2pzi_A Probable serine/threoni 98.8 2E-07 7E-12 93.6 20.3 181 198-387 402-602 (681)
103 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-09 4.2E-14 87.0 2.6 126 332-460 4-133 (150)
104 2r5s_A Uncharacterized protein 98.8 2.7E-08 9.3E-13 81.6 10.6 156 262-454 9-171 (176)
105 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.3E-07 7.9E-12 79.4 16.9 185 221-428 3-219 (225)
106 3u3w_A Transcriptional activat 98.8 1.5E-06 5.1E-11 77.6 22.3 160 295-454 80-264 (293)
107 2vsy_A XCC0866; transferase, g 98.8 1.6E-07 5.6E-12 92.5 17.5 147 235-387 2-154 (568)
108 3gyz_A Chaperone protein IPGC; 98.8 3.5E-08 1.2E-12 78.3 10.2 97 362-458 37-135 (151)
109 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.9E-07 6.4E-12 79.0 15.5 130 291-426 7-154 (213)
110 2uy1_A Cleavage stimulation fa 98.8 8.6E-06 3E-10 78.2 28.2 349 53-421 17-412 (493)
111 2r5s_A Uncharacterized protein 98.8 1.6E-07 5.4E-12 76.9 13.8 155 224-385 8-168 (176)
112 3urz_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 79.1 14.0 128 295-425 59-189 (208)
113 3rjv_A Putative SEL1 repeat pr 98.7 2.2E-07 7.4E-12 78.7 14.6 173 72-255 4-199 (212)
114 3qou_A Protein YBBN; thioredox 98.7 4.2E-07 1.4E-11 80.9 17.1 164 219-386 114-280 (287)
115 2qfc_A PLCR protein; TPR, HTH, 98.7 4.5E-07 1.5E-11 81.0 17.4 163 292-454 77-264 (293)
116 2uy1_A Cleavage stimulation fa 98.7 4E-06 1.4E-10 80.5 24.8 337 100-455 28-412 (493)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.3E-07 2.5E-11 75.3 16.7 131 262-393 9-154 (213)
118 3urz_A Uncharacterized protein 98.7 3E-07 1E-11 77.5 14.0 132 264-399 59-196 (208)
119 4gco_A Protein STI-1; structur 98.7 1.3E-07 4.4E-12 72.6 10.6 105 327-433 15-121 (126)
120 2ifu_A Gamma-SNAP; membrane fu 98.7 3.2E-07 1.1E-11 82.7 13.8 196 234-454 3-222 (307)
121 1a17_A Serine/threonine protei 98.7 4.6E-07 1.6E-11 73.0 13.4 126 327-454 15-144 (166)
122 3dra_A Protein farnesyltransfe 98.6 4.2E-06 1.4E-10 74.4 20.3 220 200-426 46-292 (306)
123 2e2e_A Formate-dependent nitri 98.6 7.5E-08 2.6E-12 78.9 8.5 123 302-427 22-149 (177)
124 4gco_A Protein STI-1; structur 98.6 4E-07 1.4E-11 69.8 11.9 104 357-460 8-114 (126)
125 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.8E-11 77.8 17.1 162 261-422 77-266 (293)
126 3u3w_A Transcriptional activat 98.6 7.9E-06 2.7E-10 72.9 21.7 158 265-422 81-266 (293)
127 3dra_A Protein farnesyltransfe 98.6 4.7E-05 1.6E-09 67.7 26.0 212 238-455 49-286 (306)
128 1na0_A Designed protein CTPR3; 98.6 7.2E-07 2.5E-11 67.7 12.6 113 325-439 9-123 (125)
129 2vgx_A Chaperone SYCD; alterna 98.6 1.5E-07 5.2E-12 74.5 8.8 90 366-455 26-117 (148)
130 2xcb_A PCRH, regulatory protei 98.6 1.8E-07 6.1E-12 73.5 8.3 91 366-456 23-115 (142)
131 1p5q_A FKBP52, FK506-binding p 98.6 3.9E-07 1.3E-11 83.1 11.5 143 290-454 147-292 (336)
132 2lni_A Stress-induced-phosphop 98.6 9.3E-07 3.2E-11 68.1 12.0 115 325-441 16-132 (133)
133 2vyi_A SGTA protein; chaperone 98.6 9E-07 3.1E-11 67.8 11.8 117 325-443 12-130 (131)
134 2kck_A TPR repeat; tetratricop 98.6 5.9E-07 2E-11 66.8 10.4 99 361-459 6-109 (112)
135 2c2l_A CHIP, carboxy terminus 98.5 2.6E-07 8.8E-12 82.0 9.6 51 406-456 148-199 (281)
136 2lni_A Stress-induced-phosphop 98.5 3.4E-07 1.2E-11 70.6 8.2 102 359-460 14-117 (133)
137 3gw4_A Uncharacterized protein 98.5 1.3E-06 4.6E-11 72.9 12.5 152 271-422 4-176 (203)
138 1hxi_A PEX5, peroxisome target 98.5 4E-07 1.4E-11 69.2 8.2 96 363-458 19-116 (121)
139 1elw_A TPR1-domain of HOP; HOP 98.5 4.8E-07 1.6E-11 68.0 8.6 93 364-456 7-101 (118)
140 3upv_A Heat shock protein STI1 98.5 1.1E-06 3.6E-11 67.3 10.5 94 363-456 6-101 (126)
141 2dba_A Smooth muscle cell asso 98.5 4.5E-07 1.5E-11 71.5 8.6 110 324-436 27-142 (148)
142 3gyz_A Chaperone protein IPGC; 98.5 2.8E-06 9.6E-11 67.2 12.8 104 322-427 32-138 (151)
143 1na0_A Designed protein CTPR3; 98.5 1.7E-06 5.9E-11 65.6 11.3 99 361-459 9-109 (125)
144 3gw4_A Uncharacterized protein 98.5 7.6E-07 2.6E-11 74.5 10.0 118 168-285 4-133 (203)
145 3sz7_A HSC70 cochaperone (SGT) 98.5 8.5E-07 2.9E-11 71.5 9.6 109 324-434 10-120 (164)
146 3q49_B STIP1 homology and U bo 98.4 2.4E-06 8.2E-11 66.3 11.7 99 324-424 8-108 (137)
147 4f3v_A ESX-1 secretion system 98.4 1.4E-06 4.7E-11 75.8 10.5 185 234-425 18-240 (282)
148 1a17_A Serine/threonine protei 98.4 8.2E-06 2.8E-10 65.5 14.6 128 291-421 14-145 (166)
149 4gcn_A Protein STI-1; structur 98.4 1.1E-06 3.9E-11 67.3 8.8 93 363-455 10-111 (127)
150 2vgx_A Chaperone SYCD; alterna 98.4 1.3E-06 4.3E-11 69.1 9.0 103 325-429 21-125 (148)
151 2e2e_A Formate-dependent nitri 98.4 5.3E-06 1.8E-10 67.7 12.9 124 335-460 20-148 (177)
152 1elw_A TPR1-domain of HOP; HOP 98.4 8.8E-06 3E-10 60.8 12.9 109 326-436 5-115 (118)
153 2dba_A Smooth muscle cell asso 98.4 1.1E-05 3.8E-10 63.2 13.9 99 360-458 27-130 (148)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 3.8E-06 1.3E-10 70.1 11.5 96 362-457 89-187 (198)
155 3q7a_A Farnesyltransferase alp 98.3 0.00052 1.8E-08 61.7 25.4 179 191-376 58-257 (349)
156 3upv_A Heat shock protein STI1 98.3 4.6E-06 1.6E-10 63.7 10.6 108 327-436 6-121 (126)
157 2vyi_A SGTA protein; chaperone 98.3 4.7E-06 1.6E-10 63.6 10.8 100 360-459 11-112 (131)
158 2xcb_A PCRH, regulatory protei 98.3 3.2E-06 1.1E-10 66.2 9.8 103 327-431 20-124 (142)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 7.3E-06 2.5E-10 65.9 12.1 96 289-387 10-105 (164)
160 4f3v_A ESX-1 secretion system 98.3 1.8E-05 6.2E-10 68.8 15.0 126 265-392 108-240 (282)
161 2c2l_A CHIP, carboxy terminus 98.3 5.3E-06 1.8E-10 73.5 12.0 189 221-421 3-198 (281)
162 2xev_A YBGF; tetratricopeptide 98.3 3.1E-06 1.1E-10 64.8 8.9 94 331-427 8-110 (129)
163 4b4t_Q 26S proteasome regulato 98.3 1.1E-05 3.8E-10 76.3 14.5 163 293-455 58-244 (434)
164 4b4t_Q 26S proteasome regulato 98.3 0.00024 8.3E-09 66.9 23.5 164 190-353 58-244 (434)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 8.3E-06 2.8E-10 77.7 13.0 143 290-454 268-413 (457)
166 3q7a_A Farnesyltransferase alp 98.2 0.001 3.6E-08 59.8 25.4 180 89-274 57-257 (349)
167 2kck_A TPR repeat; tetratricop 98.2 1.1E-05 3.9E-10 59.6 10.8 101 325-427 6-111 (112)
168 1p5q_A FKBP52, FK506-binding p 98.2 1.8E-05 6.3E-10 72.0 13.7 94 258-352 146-257 (336)
169 1wao_1 Serine/threonine protei 98.2 3.6E-06 1.2E-10 80.6 9.3 117 333-451 14-134 (477)
170 1elr_A TPR2A-domain of HOP; HO 98.2 6.2E-06 2.1E-10 63.0 8.8 108 326-436 5-121 (131)
171 3q49_B STIP1 homology and U bo 98.2 1.8E-05 6.1E-10 61.2 11.0 98 359-456 7-106 (137)
172 2xev_A YBGF; tetratricopeptide 98.2 3.2E-05 1.1E-09 59.0 12.0 90 367-456 8-105 (129)
173 2if4_A ATFKBP42; FKBP-like, al 98.1 7.7E-06 2.6E-10 74.6 9.5 152 290-461 179-333 (338)
174 2hr2_A Hypothetical protein; a 98.1 1E-05 3.5E-10 63.5 8.8 62 395-456 59-131 (159)
175 3ro3_A PINS homolog, G-protein 98.1 6.8E-06 2.3E-10 65.5 8.2 93 363-455 51-157 (164)
176 3rkv_A Putative peptidylprolyl 98.1 7.8E-06 2.7E-10 65.6 8.2 103 325-427 11-131 (162)
177 3ro3_A PINS homolog, G-protein 98.1 1.9E-05 6.4E-10 62.8 10.5 132 292-423 11-159 (164)
178 1elr_A TPR2A-domain of HOP; HO 98.1 1E-05 3.5E-10 61.8 8.6 109 291-400 5-119 (131)
179 3k9i_A BH0479 protein; putativ 98.1 2.2E-06 7.6E-11 64.6 4.5 91 338-428 3-96 (117)
180 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.3E-10 74.9 12.2 126 334-459 318-467 (490)
181 2fbn_A 70 kDa peptidylprolyl i 98.1 6.1E-06 2.1E-10 68.8 7.4 149 271-421 16-185 (198)
182 4gcn_A Protein STI-1; structur 98.1 5.3E-05 1.8E-09 57.8 11.9 58 294-352 12-69 (127)
183 1ihg_A Cyclophilin 40; ppiase 98.1 2.2E-05 7.6E-10 72.3 11.5 138 291-449 224-363 (370)
184 1hxi_A PEX5, peroxisome target 98.0 2.5E-05 8.5E-10 59.1 9.1 96 329-426 21-118 (121)
185 2if4_A ATFKBP42; FKBP-like, al 98.0 1.6E-05 5.6E-10 72.4 7.9 126 325-467 179-304 (338)
186 3k9i_A BH0479 protein; putativ 97.9 1E-05 3.4E-10 60.9 5.2 82 374-455 3-89 (117)
187 3dss_A Geranylgeranyl transfer 97.9 0.0023 7.8E-08 57.2 20.8 80 238-320 90-175 (331)
188 3rkv_A Putative peptidylprolyl 97.9 8.4E-05 2.9E-09 59.4 10.1 100 291-392 12-129 (162)
189 2l6j_A TPR repeat-containing p 97.9 4.8E-06 1.6E-10 61.7 2.4 93 360-452 3-103 (111)
190 3ma5_A Tetratricopeptide repea 97.9 7.5E-05 2.6E-09 54.2 8.7 64 392-455 6-69 (100)
191 1dce_A Protein (RAB geranylger 97.9 0.00092 3.1E-08 65.2 18.9 169 274-445 44-244 (567)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 2.7E-05 9.3E-10 74.1 7.7 100 363-462 270-386 (457)
193 3dss_A Geranylgeranyl transfer 97.8 0.0034 1.2E-07 56.1 20.6 181 275-458 90-306 (331)
194 1wao_1 Serine/threonine protei 97.8 0.00014 4.8E-09 69.5 11.5 85 231-318 15-102 (477)
195 2kat_A Uncharacterized protein 97.8 0.0001 3.6E-09 54.9 8.4 80 343-424 3-84 (115)
196 1na3_A Designed protein CTPR2; 97.7 0.00015 5.2E-09 51.1 8.3 80 361-440 9-90 (91)
197 2hr2_A Hypothetical protein; a 97.7 0.00013 4.5E-09 57.2 8.3 69 363-431 59-140 (159)
198 1ihg_A Cyclophilin 40; ppiase 97.7 0.00012 4E-09 67.5 9.0 116 325-459 223-339 (370)
199 2l6j_A TPR repeat-containing p 97.6 0.00025 8.5E-09 52.2 8.3 70 391-460 2-71 (111)
200 3bee_A Putative YFRE protein; 97.6 0.00048 1.7E-08 48.9 8.9 69 391-459 4-75 (93)
201 1klx_A Cysteine rich protein B 97.5 0.00091 3.1E-08 51.7 10.9 89 367-457 31-127 (138)
202 1zu2_A Mitochondrial import re 97.5 4.6E-05 1.6E-09 59.7 2.9 87 337-425 14-123 (158)
203 3n71_A Histone lysine methyltr 97.5 0.00046 1.6E-08 65.7 10.2 122 300-421 319-463 (490)
204 1dce_A Protein (RAB geranylger 97.4 0.001 3.5E-08 64.9 12.1 157 304-464 43-229 (567)
205 1na3_A Designed protein CTPR2; 97.4 0.00051 1.7E-08 48.3 7.6 68 392-459 8-75 (91)
206 3qww_A SET and MYND domain-con 97.4 0.0004 1.4E-08 65.0 8.7 82 374-455 311-410 (433)
207 1klx_A Cysteine rich protein B 97.4 0.0044 1.5E-07 47.7 13.2 112 304-424 9-128 (138)
208 3qwp_A SET and MYND domain-con 97.3 0.00096 3.3E-08 62.5 9.6 84 371-454 297-398 (429)
209 2kc7_A BFR218_protein; tetratr 97.2 0.00063 2.2E-08 48.8 5.7 80 367-454 6-88 (99)
210 1zu2_A Mitochondrial import re 97.2 0.00044 1.5E-08 54.1 4.8 86 373-458 14-122 (158)
211 2kc7_A BFR218_protein; tetratr 97.1 0.00067 2.3E-08 48.7 4.9 63 399-461 6-69 (99)
212 1wy6_A Hypothetical protein ST 97.1 0.031 1E-06 41.6 13.3 140 301-459 18-157 (172)
213 2kat_A Uncharacterized protein 97.1 0.0016 5.5E-08 48.2 7.1 23 261-283 21-43 (115)
214 3qww_A SET and MYND domain-con 97.0 0.0052 1.8E-07 57.5 11.5 92 337-428 310-422 (433)
215 3ma5_A Tetratricopeptide repea 97.0 0.0032 1.1E-07 45.3 8.1 60 292-352 9-68 (100)
216 3lvg_A Clathrin heavy chain 1; 96.9 0.00047 1.6E-08 63.4 3.6 237 49-310 53-324 (624)
217 3qwp_A SET and MYND domain-con 96.9 0.009 3.1E-07 55.9 12.3 98 332-429 294-412 (429)
218 3ly7_A Transcriptional activat 96.9 0.044 1.5E-06 49.3 15.8 69 358-426 274-343 (372)
219 1qsa_A Protein (soluble lytic 96.9 0.29 1E-05 47.8 22.8 115 304-421 228-347 (618)
220 3ly7_A Transcriptional activat 96.7 0.009 3.1E-07 53.7 10.1 78 390-469 274-351 (372)
221 3mkq_A Coatomer beta'-subunit; 96.7 0.025 8.7E-07 57.9 14.8 190 164-412 607-802 (814)
222 3mkq_A Coatomer beta'-subunit; 96.7 0.022 7.4E-07 58.4 14.2 26 362-387 682-707 (814)
223 3u64_A Protein TP_0956; tetrat 96.6 0.0094 3.2E-07 51.4 8.8 88 377-464 179-277 (301)
224 3bee_A Putative YFRE protein; 96.2 0.032 1.1E-06 39.3 8.5 67 359-425 4-75 (93)
225 1pc2_A Mitochondria fission pr 96.1 0.014 4.8E-07 45.1 6.6 88 339-428 12-106 (152)
226 3mkq_B Coatomer subunit alpha; 96.1 0.28 9.7E-06 38.8 14.1 103 269-389 15-117 (177)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.041 1.4E-06 39.7 8.9 70 362-431 6-84 (104)
228 1pc2_A Mitochondria fission pr 95.8 0.042 1.4E-06 42.4 7.9 84 306-392 14-103 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.6 0.052 1.8E-06 39.1 7.6 68 392-459 4-78 (104)
230 3mkq_B Coatomer subunit alpha; 95.5 0.71 2.4E-05 36.6 14.6 105 164-287 13-117 (177)
231 3u64_A Protein TP_0956; tetrat 95.3 0.52 1.8E-05 40.7 13.8 115 168-286 133-267 (301)
232 3lvg_A Clathrin heavy chain 1; 95.3 0.0017 5.8E-08 59.8 -1.6 237 155-413 53-324 (624)
233 4h7y_A Dual specificity protei 94.6 0.076 2.6E-06 40.5 6.0 105 324-431 12-132 (161)
234 1nzn_A CGI-135 protein, fissio 94.3 0.42 1.4E-05 35.4 9.4 88 341-430 17-111 (126)
235 4gns_B Protein CSD3, chitin bi 94.0 0.3 1E-05 48.7 10.5 55 400-454 344-398 (754)
236 1wy6_A Hypothetical protein ST 93.6 1.7 5.8E-05 32.5 12.1 63 293-357 94-156 (172)
237 4h7y_A Dual specificity protei 93.4 1.3 4.6E-05 33.8 10.7 101 288-391 11-125 (161)
238 1nzn_A CGI-135 protein, fissio 93.1 0.065 2.2E-06 39.7 3.1 86 376-461 16-108 (126)
239 4b4t_P 26S proteasome regulato 92.5 6.8 0.00023 36.6 17.0 96 190-285 140-244 (445)
240 2wpv_A GET4, UPF0363 protein Y 91.6 6.5 0.00022 34.4 19.3 170 159-354 36-217 (312)
241 3ffl_A Anaphase-promoting comp 91.6 0.98 3.3E-05 35.2 8.1 28 429-456 124-151 (167)
242 4b4t_P 26S proteasome regulato 91.5 6 0.0002 36.9 15.2 49 235-285 29-82 (445)
243 1y8m_A FIS1; mitochondria, unk 90.5 2.9 9.8E-05 31.6 9.5 71 358-428 36-112 (144)
244 4ady_A RPN2, 26S proteasome re 90.2 18 0.00062 37.0 21.4 253 195-456 382-658 (963)
245 2ff4_A Probable regulatory pro 90.1 0.9 3.1E-05 41.7 8.1 59 363-421 173-233 (388)
246 1v54_E Cytochrome C oxidase po 89.7 2 6.7E-05 30.1 7.3 63 305-369 25-87 (109)
247 4fhn_B Nucleoporin NUP120; pro 89.3 8.3 0.00028 41.1 15.7 79 158-238 901-987 (1139)
248 2uwj_G Type III export protein 89.2 3.9 0.00013 28.5 8.4 87 136-227 21-107 (115)
249 3o48_A Mitochondria fission 1 88.6 1.2 4.1E-05 33.2 6.2 71 358-428 37-113 (134)
250 4gns_B Protein CSD3, chitin bi 88.6 5.4 0.00019 39.8 12.7 51 335-388 347-398 (754)
251 2p58_C Putative type III secre 88.4 4.1 0.00014 28.4 8.1 87 136-227 22-108 (116)
252 1v54_E Cytochrome C oxidase po 88.1 5.2 0.00018 28.1 9.3 57 379-435 28-87 (109)
253 4fhn_B Nucleoporin NUP120; pro 87.2 12 0.00042 39.7 15.4 119 258-379 841-989 (1139)
254 2ff4_A Probable regulatory pro 87.1 3.4 0.00012 37.8 9.8 68 295-363 176-247 (388)
255 3ffl_A Anaphase-promoting comp 86.0 5.7 0.00019 30.9 8.9 52 265-316 26-89 (167)
256 3lpz_A GET4 (YOR164C homolog); 85.5 19 0.00064 31.9 21.2 168 261-455 37-215 (336)
257 2y69_E Cytochrome C oxidase su 84.4 5 0.00017 29.9 7.3 62 306-369 69-130 (152)
258 3txn_A 26S proteasome regulato 83.9 25 0.00086 32.0 17.8 164 223-386 20-206 (394)
259 3ltm_A Alpha-REP4; protein eng 83.7 16 0.00055 29.5 17.7 47 258-304 125-171 (211)
260 2y69_E Cytochrome C oxidase su 83.6 12 0.0004 27.9 9.3 50 386-435 81-130 (152)
261 2uwj_G Type III export protein 83.4 9.3 0.00032 26.6 8.9 88 236-330 20-107 (115)
262 2p58_C Putative type III secre 82.8 10 0.00034 26.5 9.3 88 236-330 21-108 (116)
263 3esl_A Checkpoint serine/threo 81.6 15 0.0005 29.7 9.8 30 394-423 116-145 (202)
264 1zbp_A Hypothetical protein VP 81.4 24 0.00082 30.0 12.7 118 299-427 6-134 (273)
265 3o48_A Mitochondria fission 1 80.9 9.5 0.00032 28.4 7.9 68 322-392 37-110 (134)
266 3ltm_A Alpha-REP4; protein eng 80.0 22 0.00075 28.7 18.4 92 257-353 93-184 (211)
267 1zbp_A Hypothetical protein VP 79.8 5 0.00017 34.1 6.9 118 195-319 5-129 (273)
268 4b4t_R RPN7, 26S proteasome re 78.5 12 0.0004 34.8 9.9 61 327-387 133-194 (429)
269 1wdy_A 2-5A-dependent ribonucl 78.5 8.4 0.00029 32.8 8.6 83 91-181 7-94 (285)
270 1n11_A Ankyrin; clathrin, BAND 78.5 13 0.00045 34.2 10.4 355 67-456 24-402 (437)
271 3lpz_A GET4 (YOR164C homolog); 78.1 36 0.0012 30.1 24.6 168 159-353 38-215 (336)
272 1y8m_A FIS1; mitochondria, unk 77.2 21 0.00072 26.9 10.6 66 391-456 37-106 (144)
273 1k1a_A B-cell lymphoma 3-encod 76.0 17 0.00059 29.9 9.6 27 94-120 14-40 (241)
274 4a1g_A Mitotic checkpoint seri 74.1 27 0.00091 26.7 8.9 47 412-458 84-132 (152)
275 1k1a_A B-cell lymphoma 3-encod 73.0 37 0.0013 27.8 11.2 51 131-181 16-68 (241)
276 4b4t_R RPN7, 26S proteasome re 72.2 38 0.0013 31.2 11.6 94 261-354 133-237 (429)
277 1qsa_A Protein (soluble lytic 70.4 83 0.0028 30.7 31.3 361 55-446 76-469 (618)
278 1n11_A Ankyrin; clathrin, BAND 69.9 25 0.00085 32.3 9.9 327 92-451 17-365 (437)
279 2wvi_A Mitotic checkpoint seri 69.1 37 0.0013 26.3 8.9 32 393-424 96-127 (164)
280 2wpv_A GET4, UPF0363 protein Y 68.8 59 0.002 28.4 21.6 169 260-454 34-215 (312)
281 3eu9_A Huntingtin-interacting 68.8 14 0.00049 30.3 7.4 19 163-181 80-98 (240)
282 3jxi_A Vanilloid receptor-rela 67.3 10 0.00036 31.9 6.2 91 93-183 9-117 (260)
283 3ltj_A Alpharep-4; protein eng 67.1 46 0.0016 26.4 18.9 48 258-305 89-136 (201)
284 3kea_A K1L; tropism, ANK repea 66.8 17 0.00057 31.3 7.5 79 95-181 37-117 (285)
285 2qx5_A Nucleoporin NIC96; mRNA 65.3 84 0.0029 30.9 12.6 85 370-454 452-565 (661)
286 3eiq_C Programmed cell death p 64.9 25 0.00086 31.5 8.2 67 262-328 220-291 (358)
287 3esl_A Checkpoint serine/threo 63.6 57 0.0019 26.3 9.2 53 102-154 95-148 (202)
288 2qx5_A Nucleoporin NIC96; mRNA 63.0 95 0.0032 30.5 12.5 81 127-214 300-383 (661)
289 3ltj_A Alpharep-4; protein eng 62.0 58 0.002 25.8 19.1 146 162-318 34-179 (201)
290 4ady_A RPN2, 26S proteasome re 60.9 1.6E+02 0.0053 30.4 26.5 249 166-421 384-657 (963)
291 3hra_A Ankyrin repeat family p 59.1 31 0.0011 27.2 7.5 15 167-181 13-27 (201)
292 3aji_A 26S proteasome non-ATPa 58.3 32 0.0011 28.0 7.6 15 96-110 13-27 (231)
293 1wdy_A 2-5A-dependent ribonucl 55.4 91 0.0031 26.0 12.9 41 241-283 198-240 (285)
294 4b4t_S RPN3, 26S proteasome re 54.1 86 0.0029 29.6 10.0 26 87-112 232-257 (523)
295 3mv2_A Coatomer subunit alpha; 53.6 1.1E+02 0.0039 26.6 12.3 67 376-456 185-256 (325)
296 2d2s_A Exocyst complex compone 53.2 44 0.0015 27.8 7.3 23 92-114 24-46 (235)
297 3b7b_A Euchromatic histone-lys 51.8 31 0.0011 28.2 6.4 21 332-352 214-234 (237)
298 4fke_A Aminopeptidase N; zinc 50.5 2.2E+02 0.0076 29.3 13.5 26 159-184 761-786 (909)
299 3ljn_A Hypothetical protein; a 50.1 57 0.0019 28.9 8.3 17 268-284 179-195 (364)
300 3hra_A Ankyrin repeat family p 49.5 70 0.0024 25.1 8.1 13 68-80 16-28 (201)
301 2wvi_A Mitotic checkpoint seri 46.7 99 0.0034 23.9 7.8 54 103-156 77-131 (164)
302 3eu9_A Huntingtin-interacting 46.2 40 0.0014 27.4 6.2 58 400-458 181-238 (240)
303 2nsz_A Programmed cell death p 44.5 66 0.0023 23.7 6.4 61 160-220 11-76 (129)
304 2rfa_A Transient receptor pote 43.6 80 0.0027 25.5 7.7 25 229-255 158-182 (232)
305 2d2s_A Exocyst complex compone 42.9 79 0.0027 26.3 7.2 29 359-387 89-117 (235)
306 2ion_A PDCD4, programmed cell 42.8 1.1E+02 0.0037 23.3 7.5 64 262-325 12-80 (152)
307 3b7b_A Euchromatic histone-lys 41.9 93 0.0032 25.2 7.9 19 163-181 81-99 (237)
308 3aji_A 26S proteasome non-ATPa 41.9 1.2E+02 0.0043 24.2 8.7 54 128-182 10-63 (231)
309 3ljn_A Hypothetical protein; a 41.5 78 0.0027 28.0 7.8 178 267-452 58-266 (364)
310 4aez_C MAD3, mitotic spindle c 41.0 1.5E+02 0.0051 24.3 8.5 52 103-154 131-183 (223)
311 4aez_C MAD3, mitotic spindle c 40.9 1.5E+02 0.0051 24.3 9.0 34 392-425 149-182 (223)
312 3ygs_P Procaspase 9; apoptosis 39.7 35 0.0012 23.7 4.0 38 170-207 51-88 (97)
313 2pnn_A Transient receptor pote 39.4 99 0.0034 25.9 7.8 90 93-183 17-125 (273)
314 4gq2_M Nucleoporin NUP120; bet 39.0 3.2E+02 0.011 28.3 12.6 51 331-387 816-866 (950)
315 3kea_A K1L; tropism, ANK repea 38.5 74 0.0025 27.1 6.8 21 265-285 65-85 (285)
316 2b7e_A PRE-mRNA processing pro 37.8 37 0.0013 21.0 3.3 33 102-134 2-35 (59)
317 1bd8_A P19INK4D CDK4/6 inhibit 37.8 43 0.0015 25.1 4.7 11 99-109 12-22 (156)
318 1wgl_A TOLL-interacting protei 37.4 47 0.0016 20.6 3.7 49 69-120 8-57 (59)
319 2rfa_A Transient receptor pote 37.4 1.6E+02 0.0054 23.6 10.2 148 67-220 13-184 (232)
320 2keb_A DNA polymerase subunit 37.2 89 0.0031 21.6 5.3 28 309-336 28-55 (101)
321 2nsz_A Programmed cell death p 36.8 1.2E+02 0.0042 22.2 8.9 64 262-325 10-78 (129)
322 1oyz_A Hypothetical protein YI 36.7 1.9E+02 0.0064 24.2 20.7 17 258-274 141-157 (280)
323 3twr_A Tankyrase-2; ankyrin re 36.7 1.3E+02 0.0045 22.5 9.7 49 67-120 18-69 (165)
324 2fe3_A Peroxide operon regulat 36.5 98 0.0033 23.2 6.4 25 92-116 27-51 (145)
325 2ion_A PDCD4, programmed cell 36.2 58 0.002 24.8 5.0 61 160-220 13-78 (152)
326 3bqo_A Telomeric repeat-bindin 35.5 1.6E+02 0.0055 23.6 7.3 47 69-115 93-146 (211)
327 1oai_A Nuclear RNA export fact 33.7 25 0.00086 21.8 2.1 23 99-121 33-56 (59)
328 3jxi_A Vanilloid receptor-rela 32.8 1E+02 0.0035 25.5 6.8 78 98-180 58-161 (260)
329 4ets_A Ferric uptake regulatio 32.5 88 0.003 24.1 5.6 60 112-172 24-85 (162)
330 3d9h_A CDNA FLJ77766, highly s 32.3 1.5E+02 0.0052 25.0 7.9 11 53-63 14-24 (285)
331 2fu4_A Ferric uptake regulatio 32.0 1.1E+02 0.0037 20.0 6.3 61 111-172 7-68 (83)
332 3txn_A 26S proteasome regulato 31.9 2.9E+02 0.0099 25.0 26.5 219 227-458 104-345 (394)
333 2ko4_A Mediator of RNA polymer 31.9 84 0.0029 20.7 4.3 38 75-112 24-62 (81)
334 4b4t_S RPN3, 26S proteasome re 31.5 1.3E+02 0.0045 28.4 7.4 63 325-387 231-296 (523)
335 2f8y_A Notch homolog 1, transl 31.3 1.9E+02 0.0065 22.9 8.0 14 167-180 100-113 (223)
336 2xig_A Ferric uptake regulatio 31.0 96 0.0033 23.4 5.6 60 112-172 18-77 (150)
337 4a1g_A Mitotic checkpoint seri 30.8 1.8E+02 0.0061 22.2 8.9 52 103-154 82-134 (152)
338 3ygs_P Procaspase 9; apoptosis 30.3 70 0.0024 22.1 4.3 35 274-308 52-86 (97)
339 2o03_A Probable zinc uptake re 29.7 77 0.0026 23.3 4.7 45 91-135 15-59 (131)
340 1oyz_A Hypothetical protein YI 29.6 2.5E+02 0.0084 23.4 19.5 19 287-305 203-221 (280)
341 1bd8_A P19INK4D CDK4/6 inhibit 28.3 45 0.0015 24.9 3.4 105 67-181 12-123 (156)
342 3bu8_A Telomeric repeat-bindin 28.2 91 0.0031 25.3 4.9 54 409-462 88-149 (235)
343 2etb_A Transient receptor pote 28.0 1.3E+02 0.0045 24.7 6.6 88 93-182 6-113 (256)
344 2etb_A Transient receptor pote 28.0 35 0.0012 28.4 2.9 54 127-181 5-68 (256)
345 3mwm_A ZUR, putative metal upt 27.7 71 0.0024 23.8 4.2 43 92-134 19-61 (139)
346 2fe3_A Peroxide operon regulat 27.7 1E+02 0.0035 23.1 5.2 63 211-276 11-73 (145)
347 3twr_A Tankyrase-2; ankyrin re 27.4 1.9E+02 0.0066 21.5 7.5 52 127-182 45-98 (165)
348 1mzb_A Ferric uptake regulatio 27.3 1.4E+02 0.0049 21.9 5.9 36 136-171 33-68 (136)
349 3bge_A Predicted ATPase; struc 27.0 2.4E+02 0.0083 22.5 7.9 44 191-234 8-54 (201)
350 2y1l_E Darpin-8.4; hydrolase-i 26.8 2E+02 0.0069 21.6 7.1 6 97-102 22-27 (169)
351 1bpo_A Protein (clathrin); cla 26.2 4E+02 0.014 24.8 12.1 143 234-391 341-486 (494)
352 3v30_A DNA-binding protein rfx 25.8 1.9E+02 0.0064 21.8 6.7 17 165-181 75-91 (172)
353 2ijq_A Hypothetical protein; s 25.7 2.3E+02 0.0078 21.8 7.7 50 372-421 43-103 (161)
354 3eyy_A Putative iron uptake re 25.6 1.1E+02 0.0037 23.0 5.0 15 137-151 33-47 (145)
355 1ug3_A EIF4GI, eukaryotic prot 25.5 1.6E+02 0.0055 26.0 6.8 153 225-390 14-170 (339)
356 2r9g_A AAA ATPase, central reg 25.5 2.6E+02 0.009 22.4 9.5 47 189-236 13-62 (204)
357 2p1h_A APAF-1, apoptotic prote 25.4 1.6E+02 0.0055 19.9 6.1 36 169-204 49-84 (94)
358 2zu6_B Programmed cell death p 25.3 2.1E+02 0.0072 24.8 7.3 66 190-258 169-236 (307)
359 1mzb_A Ferric uptake regulatio 25.2 2E+02 0.0067 21.2 6.3 64 74-138 6-70 (136)
360 3mkr_B Coatomer subunit alpha; 24.9 2.8E+02 0.0097 24.2 7.9 108 300-425 112-230 (320)
361 2zu6_B Programmed cell death p 24.8 3.4E+02 0.012 23.5 10.2 57 159-215 6-66 (307)
362 2xig_A Ferric uptake regulatio 24.0 2.3E+02 0.0079 21.3 7.0 15 339-353 40-54 (150)
363 2w57_A Ferric uptake regulatio 23.8 2.3E+02 0.0078 21.3 6.6 63 110-173 6-69 (150)
364 4gq2_M Nucleoporin NUP120; bet 23.8 6.2E+02 0.021 26.1 12.0 108 265-375 816-950 (950)
365 3ctd_A Putative ATPase, AAA fa 23.7 2.9E+02 0.01 22.3 8.8 49 188-236 33-84 (213)
366 2keb_A DNA polymerase subunit 23.3 1.9E+02 0.0065 20.0 6.7 55 344-401 28-90 (101)
367 3m0z_A Putative aldolase; MCSG 23.3 1.2E+02 0.004 24.9 4.7 79 377-455 147-246 (249)
368 2xai_A ASB-9, ankyrin repeat a 23.2 2.6E+02 0.009 23.0 7.6 168 106-284 16-188 (261)
369 2ijq_A Hypothetical protein; s 23.0 2.2E+02 0.0077 21.9 6.2 61 88-149 35-103 (161)
370 2r9g_A AAA ATPase, central reg 22.8 3E+02 0.01 22.1 9.2 44 296-340 17-63 (204)
371 2qq8_A TBC1 domain family memb 22.6 2.1E+02 0.0072 25.1 7.0 75 311-388 214-293 (334)
372 2qfz_A TBC1 domain family memb 22.5 3.9E+02 0.013 23.4 8.8 79 208-288 230-315 (345)
373 2w57_A Ferric uptake regulatio 22.3 1.3E+02 0.0044 22.7 4.8 51 87-137 17-68 (150)
374 2o03_A Probable zinc uptake re 22.0 1.5E+02 0.0051 21.7 5.0 45 295-339 15-59 (131)
375 3eiq_C Programmed cell death p 22.0 4.2E+02 0.014 23.5 16.1 24 396-419 220-243 (358)
376 3bqo_A Telomeric repeat-bindin 21.7 1.6E+02 0.0054 23.6 5.1 22 401-422 125-146 (211)
377 2yru_A Steroid receptor RNA ac 21.4 93 0.0032 22.5 3.5 42 108-149 48-89 (118)
378 2fu4_A Ferric uptake regulatio 20.9 1.8E+02 0.0062 18.8 6.5 61 211-274 6-67 (83)
379 1lsh_A Lipovitellin (LV-1N, LV 20.0 7.7E+02 0.026 25.8 17.3 256 46-318 305-573 (1056)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-39 Score=320.51 Aligned_cols=429 Identities=7% Similarity=-0.023 Sum_probs=371.9
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-CCCchhhHHHHHHHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-SYSAAFHWNNIIRLY 96 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~ 96 (471)
+..+++.+.+..+++.+..++... ++..|+.. .+..+...|.+ .|++++|..+|+++. .+++..+|+.++.+|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~--~~~~p~~~-~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKV--LDITGNPN-DAFWLAQVYCC---TGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--HHHHCCHH-HHHHHHHHHHH---TTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHH--HhhCCCch-HHHHHHHHHHH---cCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 455677777777777776666644 35667888 88999999999 788999999999874 257889999999999
Q ss_pred HhCCCchHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHH-
Q 012101 97 TRLEAPKKALDIYIFMSRA---------------GVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCES- 160 (471)
Q Consensus 97 ~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 160 (471)
.+.|++++|+++|+++... |.+++..+|+.++.++.+.|++++|.++|+++.+.+ +.+...+.
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 239 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQ 239 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHH
Confidence 9999999999999953221 223457899999999999999999999999999875 22333332
Q ss_pred -------------------------------------HHHHHHHhcCChhhHHHHhccCCC--CCcchHHHHHHHHHcCC
Q 012101 161 -------------------------------------GFISLYSKAGDFEKARKVFDENPE--RKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 161 -------------------------------------~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~ 201 (471)
.++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 235566788999999999999987 78889999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+ .+. .+.+..+++.++.+|.+.|++++|.++
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDL--VDR-HPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHH--HHH-CTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH--Hhh-CcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999875 457788999999999999999999999999 543 355788999999999999999999999
Q ss_pred HHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC
Q 012101 282 FWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358 (471)
Q Consensus 282 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (471)
|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 472 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--Q 472 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 998754 567899999999999999999999999999874 4578899999999999999999999999998652 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.++.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 46789999999999999999999999998 45787 7899999999999999999999999999999988899
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 430 YVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 430 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
|..++.+|.+.|++++|.+.++++.+.++..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998876554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-35 Score=297.13 Aligned_cols=377 Identities=9% Similarity=-0.078 Sum_probs=320.0
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (471)
.|....+...+..++. +++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+++.
T Consensus 66 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCccCCCCCccccchH-HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4556777777877764 6788999999999999999999999999985 457889999999999999999999999998
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCC-------------------cchHHHHHHHHHcCCChhHHH
Q 012101 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERK-------------------LGSWNAIIAGLSQDGRAKEAI 207 (471)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------------------~~~~~~li~~~~~~~~~~~a~ 207 (471)
+... +++..+++.++.+|.+.|++++|.++|+++...+ ..+|+.++.+|.+.|++++|+
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8643 6788999999999999999999999999654433 668999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH--------------------------------------HHHHHcCcCCHHHHHHHHHHHH
Q 012101 208 DMFIGLKKCGFEPDDVTMVS--------------------------------------VTSACGSLGDLELALQVHKYVF 249 (471)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~--------------------------------------li~~~~~~~~~~~a~~~~~~~~ 249 (471)
++|++|.+.+ +.+...+.. ++..|.+.|++++|.++|+.+
T Consensus 221 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~- 298 (597)
T 2xpi_A 221 ECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI- 298 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh-
Confidence 9999998864 223333332 245567889999999999988
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 012101 250 QVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326 (471)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 326 (471)
.+. +++..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..
T Consensus 299 -~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 299 -NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp -TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred -hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 554 57899999999999999999999999999864 567899999999999999999999999998653 55788
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
++..+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 99999999999999999999999997642 345779999999999999999999999998 4444 7889999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
+.|++++|.++|+++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998999999999999999999999999999775
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.8e-30 Score=247.27 Aligned_cols=183 Identities=11% Similarity=0.207 Sum_probs=159.6
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC---------HHHHHHHHHHHHHhhcCCCCCh
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD---------LELALQVHKYVFQVKSKQKSDT 259 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 259 (471)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++| ...|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M--~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM--IVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH--HHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH--HHhCCCCCH
Confidence 5778888888889999999999999888999999999999988876553 67888899998 888889999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
.+|+++|++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999988864 888999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
++.|++++|.+++++|.+. |..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999665 8889999999888888753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-30 Score=250.95 Aligned_cols=212 Identities=13% Similarity=0.077 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhcc
Q 012101 103 KKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
..+..+.+++.++++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 3455666777777765544 357788888888888888888888888888888888888888888877654332
Q ss_pred CCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhH
Q 012101 182 NPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLM 261 (471)
Q Consensus 182 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 261 (471)
.+.++.++|.++|++|...|+.||..||+++|.+|++.|++++|.++|++| .+.|+.||..+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M--~~~g~~Pd~~t 142 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM--KAFGIQPRLRS 142 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--HHcCCCCccce
Confidence 234567889999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
|+++|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999964 99999999999999999999999999999999999999999999998876
Q ss_pred C
Q 012101 338 G 338 (471)
Q Consensus 338 ~ 338 (471)
.
T Consensus 223 ~ 223 (501)
T 4g26_A 223 E 223 (501)
T ss_dssp H
T ss_pred C
Confidence 3
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.5e-27 Score=222.46 Aligned_cols=367 Identities=12% Similarity=0.039 Sum_probs=296.9
Q ss_pred cCchHHHHHHhcccC--CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHH
Q 012101 67 LNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLH 144 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 144 (471)
.|++++|...++++. .+.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|...|
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888887653 23455667777788888999999999998887754 456778888999999999999999999
Q ss_pred HHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 012101 145 SLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD 221 (471)
Q Consensus 145 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 221 (471)
+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus 91 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 9988764 44456788888999999999999999887643 3 33467788888888899999999999888763 445
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHH
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIV 298 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 298 (471)
..++..+...+...|++++|...|+++ .+.. +.+...+..+...+...|++++|...|++..+ .+..++..+..
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKA--VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 678888888899999999999999988 5543 33567788888899999999999998887653 45678888889
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
.+...|++++|...++++.+.+ +.+..++..+...+.+.|++++|.+.|+++.+. .+.+..++..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999988763 234667888888899999999999999998765 2456778888889999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+|.+.++++ ...| +..++..+..++.+.|++++|...++++.+..|..+..|..++.++.+.|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999888 5555 467888889999999999999999999999888888888888888777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4e-27 Score=221.99 Aligned_cols=359 Identities=12% Similarity=0.076 Sum_probs=308.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999998763 2344556666677889999999999999998865 6677899999999999999
Q ss_pred hhhHHHHhccCCC--C-CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHH
Q 012101 172 FEKARKVFDENPE--R-KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYV 248 (471)
Q Consensus 172 ~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 248 (471)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.|+.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999998653 3 44579999999999999999999999998863 334566778888899999999999999999
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 249 FQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+.
T Consensus 162 --l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 162 --IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp --HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred --HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 5543 34578899999999999999999999998864 456788889999999999999999999998763 3357
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PM-KANVVIWGCLMGAC 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~ 403 (471)
.++..+..++...|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.++++ .. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 788899999999999999999999997642 234678999999999999999999999998 33 34778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|...++++.+..|.+..++..++.+|.+.|++++|.+.++++.+..+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999988889999999999999999999999999886544
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-24 Score=209.56 Aligned_cols=395 Identities=10% Similarity=-0.043 Sum_probs=315.4
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKAS 131 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 131 (471)
.+..+...+.+ .|++++|+..|+++.. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++
T Consensus 8 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFR---NKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHH---TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45566677777 7889999999998743 4788999999999999999999999999998865 33567888999999
Q ss_pred hccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhc-------------------------------
Q 012101 132 CQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFD------------------------------- 180 (471)
Q Consensus 132 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~------------------------------- 180 (471)
.+.|++++|...|+.+.+.+ +++......++..+.+......+.+.+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 3444444445544444332222222221
Q ss_pred -------cCC---------CC-CcchHHHHHHHHHc---CCChhHHHHHHHHHHH-----CCC--------CCCHHHHHH
Q 012101 181 -------ENP---------ER-KLGSWNAIIAGLSQ---DGRAKEAIDMFIGLKK-----CGF--------EPDDVTMVS 227 (471)
Q Consensus 181 -------~~~---------~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~ 227 (471)
... .+ +...+......+.. .|++++|+.+|+++.+ ... +.+...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 100 01 12244444454554 8999999999999987 311 223457778
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCC
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANG 304 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 304 (471)
+...+...|++++|...++.+ .+.... ...+..+..+|...|++++|...|+++.+ .+...|..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~--l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKA--IELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHH--HHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHH--HhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC
Confidence 888899999999999999999 655544 88899999999999999999999998765 45678899999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.+
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998864 3356788888999999999999999999997653 335678889999999999999999999
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 385 EGM----PMKAN----VVIWGCLMGACEK---FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 385 ~~m----~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+++ +..++ ..++..+..++.. .|++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 988 22222 4488999999999 999999999999999999988889999999999999999999999999
Q ss_pred hcCCCc
Q 012101 454 KHRNLA 459 (471)
Q Consensus 454 ~~~~~~ 459 (471)
.+.+..
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 876553
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8e-23 Score=196.44 Aligned_cols=318 Identities=11% Similarity=-0.006 Sum_probs=188.6
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 456678888888888888888888888887653 3456777778888888888888888888888765 44456667777
Q ss_pred HHHHhcCChhhHHHHhccCCCCCc------chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC
Q 012101 164 SLYSKAGDFEKARKVFDENPERKL------GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD 237 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 237 (471)
.+|.+.|++++|.+.|+++.+.+. ..+..++..+... .+..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 777777777777777766544322 3343333321100 01111222334455
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFH 314 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (471)
+++|...++.+ .+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|...|+
T Consensus 159 ~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 159 YTAAIAFLDKI--LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555554 2221 22344455555555555555555555554432 344555555555555555555555555
Q ss_pred HHHHcCCCCC-HHHHHHH------------HHHhccCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCC
Q 012101 315 YMRESGIRPN-HVTFVGV------------LSACVHGGKVQEGKHFFEMMKNVYQIEPR-----FAHYGCMVDLLGRAGL 376 (471)
Q Consensus 315 ~m~~~~~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~ 376 (471)
++.+. .|+ ...+..+ ...|.+.|++++|...|+.+.+. .|+ ...+..+..++.+.|+
T Consensus 236 ~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 236 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCC
Confidence 55543 222 2222222 45566666666666666666543 233 2355666666666777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 377 LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+++|.+.++++ ...| +..+|..+..+|...|++++|...++++.+..|.++..+..+.
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 77777766665 3333 4566666667777777777777777777766666665655555
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.7e-23 Score=199.23 Aligned_cols=401 Identities=9% Similarity=-0.064 Sum_probs=306.7
Q ss_pred hHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC--CCCchhhHHHHHHHHH
Q 012101 20 PLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH--SYSAAFHWNNIIRLYT 97 (471)
Q Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~ 97 (471)
..-..+....+++.+..... ..+...|++. .+..+...|.+ .|++++|...|++.. .+.+..+|..+..++.
T Consensus 11 ~~g~~~~~~g~~~~A~~~~~--~al~~~p~~~-~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 11 DKGNQFFRNKKYDDAIKYYN--WALELKEDPV-FYSNLSACYVS---VGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHTSCHHHHHHHHH--HHHHHCCCHH-HHHHHHHHHHH---HTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHH--HHHhcCccHH-HHHhHHHHHHH---HhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 33444555666666555554 5555568888 99999999999 888999999998764 2456779999999999
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh---------------------------
Q 012101 98 RLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRL--------------------------- 150 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------------------- 150 (471)
+.|++++|+..|+++.+.+. ++......++..+........+.+.+..+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998763 45555555554444332222222222111100
Q ss_pred --------CC---------CCCcchHHHHHHHHHh---cCChhhHHHHhccCCC----------------C-CcchHHHH
Q 012101 151 --------GL---------ESNEFCESGFISLYSK---AGDFEKARKVFDENPE----------------R-KLGSWNAI 193 (471)
Q Consensus 151 --------~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~l 193 (471)
.. +.+...+..+...+.. .|++++|.+.|+++.+ + +..+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 0112233333343443 8999999999987544 1 23478889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
...+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+ .... +.+..++..+...|...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA--LKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH--HTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH--hhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998874 44888889999999999999999999998 5543 345778999999999999
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998753 456788889999999999999999999998763 33567888889999999999999999999
Q ss_pred hHHhcCCCCC----hhHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 351 MKNVYQIEPR----FAHYGCMVDLLGR---AGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 351 ~~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+.+...-.++ ...+..+...+.. .|++++|.+.++.+ ...| +..++..+..++.+.|++++|...++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8765333333 3488899999999 99999999999998 4444 577889999999999999999999999999
Q ss_pred cCCCCCchHHHH
Q 012101 422 LEPWSDGAYVVL 433 (471)
Q Consensus 422 ~~~~~~~~~~~l 433 (471)
..|.++..+..+
T Consensus 478 ~~~~~~~~~~~~ 489 (514)
T 2gw1_A 478 LARTMEEKLQAI 489 (514)
T ss_dssp HCSSHHHHHHHH
T ss_pred hccccHHHHHHH
Confidence 999876655544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.9e-21 Score=191.29 Aligned_cols=390 Identities=11% Similarity=-0.013 Sum_probs=266.0
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKA 130 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 130 (471)
.+..+...+.+ .|++++|...|++.-. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+...+..+..+
T Consensus 27 ~~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFT---AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHH---TTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 44555555666 5566666666665432 3455666667777777777777777777766653 2345556666666
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCc-----------------------------------chHHHHHHHHHhcCChhhH
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNE-----------------------------------FCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~ll~~~~~~g~~~~a 175 (471)
+...|++++|...++. ... .|+. ......+..+....+.+.+
T Consensus 103 ~~~~g~~~~A~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSV-LSL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHTCHHHHHHHHHH-HC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHH-Hhc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 6677777777766642 211 1111 1112223333344444444
Q ss_pred HHHhccCCCCCcc---hHHHHHHHHHcC--------CChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHcCcC
Q 012101 176 RKVFDENPERKLG---SWNAIIAGLSQD--------GRAKEAIDMFIGLKKCGFEPD--------DVTMVSVTSACGSLG 236 (471)
Q Consensus 176 ~~~~~~~~~~~~~---~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~--------~~~~~~li~~~~~~~ 236 (471)
...+......+.. ....+...+... |++++|+.+|+++.+. .|+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 4444444433332 223333322222 4788888898888865 343 224666667778889
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHH
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCF 313 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (471)
++++|...++.+ .+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|...+
T Consensus 258 ~~~~A~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQES--INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHH--HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH--HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999988 5543 3467788888889999999999999987754 45678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C----
Q 012101 314 HYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P---- 388 (471)
Q Consensus 314 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---- 388 (471)
++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.++++ .
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9988764 3345678888888889999999999999987652 334567888888999999999999998887 1
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 389 ---MKANVVIWGCLMGACEKF----------GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 389 ---~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.......+.....++... |++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111223345556677777 9999999999999999988888889999999999999999999998876
Q ss_pred CCC
Q 012101 456 RNL 458 (471)
Q Consensus 456 ~~~ 458 (471)
...
T Consensus 491 ~~~ 493 (537)
T 3fp2_A 491 LAR 493 (537)
T ss_dssp HC-
T ss_pred hCC
Confidence 544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.4e-21 Score=187.81 Aligned_cols=308 Identities=13% Similarity=0.009 Sum_probs=218.0
Q ss_pred CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHH
Q 012101 120 DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAG 196 (471)
Q Consensus 120 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 196 (471)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445555555555555555555555555432 33344455555555555555555555544322 123344455555
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 012101 197 LSQDGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC 272 (471)
Q Consensus 197 ~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (471)
|.+.|++++|...|+++.+. .|+. ..+..+...+. ...+..+...+.+.
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------------------------~~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-------------------------MQRLRSQALNAFGS 156 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHc
Confidence 55555555555555555433 2221 22222221110 00122335568889
Q ss_pred CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHH
Q 012101 273 GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFE 349 (471)
Q Consensus 273 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 349 (471)
|++++|...|+++.+ .+...+..+...|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998764 567889999999999999999999999998763 4567889999999999999999999999
Q ss_pred HhHHhcCCCCC-hhHHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHH
Q 012101 350 MMKNVYQIEPR-FAHYGCM------------VDLLGRAGLLEEARAMVEGM-PMKAN-----VVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 350 ~~~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~l~~~~~~~~~~~ 410 (471)
++.+. .|+ ...+..+ ...+.+.|++++|.+.|+++ ...|+ ...+..+..++.+.|+++
T Consensus 236 ~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 99765 344 3344444 78899999999999999998 54554 457888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+|...++++.+..|.++..|..++.+|...|++++|.+.++++.+..+.
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 9999999999999988899999999999999999999999999886554
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=6.1e-21 Score=187.59 Aligned_cols=367 Identities=11% Similarity=0.000 Sum_probs=275.1
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
....|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34578889999999999999999999998865 3467889999999999999999999999999876 556788899999
Q ss_pred HHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC------CCCCCHHH--------------
Q 012101 165 LYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC------GFEPDDVT-------------- 224 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~-------------- 224 (471)
++...|++++|.+.|+.+. .+....+..+..+...+...+|...++++... ...|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999999996442 22222333344455555667788888777542 11222222
Q ss_pred ----------------HHHHHHHHcCc--------CCHHHHHHHHHHHHHhhcCCCCC------hhHHHHHHHHHHhcCC
Q 012101 225 ----------------MVSVTSACGSL--------GDLELALQVHKYVFQVKSKQKSD------TLMLNSLIDMYGKCGR 274 (471)
Q Consensus 225 ----------------~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~ 274 (471)
...+...+... +++++|..+++.+ .+...... ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~--l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL--LSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH--HC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 12222222222 3788888888888 54432211 2346677788889999
Q ss_pred hHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 275 MDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 275 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
+++|...|++..+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999998864 667788888889999999999999999988764 3457788888889999999999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA- 429 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 429 (471)
+.. +.+...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.++..
T Consensus 338 ~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 652 234567888999999999999999999988 3344 56688888999999999999999999998877554433
Q ss_pred -----HHHHHHHHHcC----------CChHHHHHHHHHhhcCCCc
Q 012101 430 -----YVVLSNIYASR----------GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 430 -----~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 459 (471)
+..++.+|.+. |++++|.+.++++.+....
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~ 460 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR 460 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC
Confidence 34456777777 9999999999998876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=3.1e-19 Score=165.67 Aligned_cols=322 Identities=10% Similarity=-0.032 Sum_probs=195.7
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
|+..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567778888888888888888888887754 3356677777788888888888888888887764 334566677777
Q ss_pred HHHhcCChhhHHHHhccCCCCCc---c---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH
Q 012101 165 LYSKAGDFEKARKVFDENPERKL---G---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL 238 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 238 (471)
.+...|++++|.+.|++..+.+. . .+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 77777777777777766544332 1 2222210000 00111223444455555
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
++|...++.+ .+.. +.+...+..+...|...|++++|...+++..+ .+..++..+...+...|++++|...+++
T Consensus 137 ~~A~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 137 TAAITFLDKI--LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555 3222 22344555555555555555555555555433 3445555566666666666666666666
Q ss_pred HHHcCCCCCHHHHH------------HHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHH
Q 012101 316 MRESGIRPNHVTFV------------GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-----AHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 316 m~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~ 378 (471)
..+.. +.+...+. .+...+.+.|++++|...++++.+.. |+. ..+..+...+...|+++
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHH
Confidence 65542 11122111 22445667777777777777776542 332 22344566777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
+|.+.+++. ...| +..++..+..++...|++++|...++++.+..|.++..+..+..++.
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 777777776 3344 56677777777777777777777777777777776666666555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5e-19 Score=164.22 Aligned_cols=307 Identities=12% Similarity=-0.016 Sum_probs=224.9
Q ss_pred cchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHH
Q 012101 121 CYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGL 197 (471)
Q Consensus 121 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 197 (471)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|.+.|++..+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3455566666777777777777777776654 34455666666666666666666666665432 2334566666666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 198 SQDGRAKEAIDMFIGLKKCGFEP---D-DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~p---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
...|++++|...|++..+. .| + ...+..+.... . ...+..+...+...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H------------------HHHHHHHHHHHHHcc
Confidence 6666666666666666544 23 1 11111111100 0 111233467889999
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.
T Consensus 135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998764 567888999999999999999999999998863 44678888999999999999999999999
Q ss_pred hHHhcCCCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHH
Q 012101 351 MKNVYQIEPR-FAHYG------------CMVDLLGRAGLLEEARAMVEGM-PMKANV-----VIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 351 ~~~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~~-----~~~~~l~~~~~~~~~~~~ 411 (471)
..+.. |+ ...+. .+...+.+.|++++|.+.++++ ...|+. ..+..+..++...|++++
T Consensus 214 a~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 214 CLKLD---QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhC---ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 98652 33 22232 2366789999999999999998 434432 235567789999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 412 GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
|...++++.+..|.++..+..++.+|.+.|++++|.+.++++.+..+.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999988899999999999999999999999999987654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=159.44 Aligned_cols=281 Identities=11% Similarity=-0.009 Sum_probs=151.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
.+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLM 102 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 333334444444444444444433321 122233334444444445555555554444432 2233444444444444
Q ss_pred cC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHH
Q 012101 235 LG-DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 235 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
.| ++++|...++.+ .... +.+...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~a--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 103 VGHKNEHARRYLSKA--TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp SCSCHHHHHHHHHHH--HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence 55 555555555544 3222 12334455555555555555555555554432 22344445555666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC-------CCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ-------IEPRFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
..+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665542 23445556666666666666666666666654321 122345666777777777777777777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HcCCCh
Q 012101 384 VEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY-ASRGLW 443 (471)
Q Consensus 384 ~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 443 (471)
+++. ...| +...+..+..++...|++++|...++++.+..|.++..+..+..++ ...|+.
T Consensus 259 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 259 HRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 7776 3233 4566777777777777777777777777777777776777777766 344443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.8e-17 Score=151.90 Aligned_cols=287 Identities=12% Similarity=-0.002 Sum_probs=170.9
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
+...+......+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~------ 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS------ 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH------
Confidence 34455555555666666666666666665543 2234444445555555566666666666555543 223334
Q ss_pred HHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 165 LYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG-RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|..
T Consensus 93 -------------------------~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 93 -------------------------WFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp -------------------------HHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred -------------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 444444444555 4555555555554432 2234445555555555555555555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESG 320 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 320 (471)
.++.+ .+... .+...+..+...|...|++++|...|++..+ .+...+..+...+...|++++|...+++..+..
T Consensus 147 ~~~~a--~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 147 AYFTA--AQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHH--HHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555 33221 1233444455566666666666666665543 344566667777777777777777777766531
Q ss_pred --------CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 321 --------IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 321 --------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
.+.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. .+.|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 13335677788888888888888888888887652 335567888888888899999999999888 6666
Q ss_pred -CHHHHHHHHHHH-HhcCCHH
Q 012101 392 -NVVIWGCLMGAC-EKFGNVK 410 (471)
Q Consensus 392 -~~~~~~~l~~~~-~~~~~~~ 410 (471)
+...+..+..++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 556777777766 4555543
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=6.8e-17 Score=156.76 Aligned_cols=352 Identities=12% Similarity=-0.015 Sum_probs=219.4
Q ss_pred CCchhhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCC
Q 012101 83 YSAAFHWNNIIRLYTR----LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQ----LFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 83 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 154 (471)
..+..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3455666666666666 667777777777766654 44555556666665 667777777777766654
Q ss_pred CcchHHHHHHHHHh----cCChhhHHHHhccCCCC-CcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHH
Q 012101 155 NEFCESGFISLYSK----AGDFEKARKVFDENPER-KLGSWNAIIAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTM 225 (471)
Q Consensus 155 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~ 225 (471)
+...+..|...|.. .+++++|.+.|++..+. +..++..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44555556666666 56777777777664433 33456666666665 567777777777766654 44555
Q ss_pred HHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHH
Q 012101 226 VSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSM 296 (471)
Q Consensus 226 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l 296 (471)
..+...|.. .++.++|.+.|+.. .+.+ +...+..+...|.. .+++++|..+|++..+ .+...+..+
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKS--ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHH--HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555554 66777777777766 4443 34456666666664 6677777777776544 445555556
Q ss_pred HHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC-----CcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 012101 297 IVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG-----GKVQEGKHFFEMMKNVYQIEPRFAHYGCM 367 (471)
Q Consensus 297 i~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 367 (471)
...|.. .+++++|...|++..+.| +...+..+...|... ++.++|...+++..+. .+...+..+
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHH
Confidence 666665 667777777777766554 333444455555544 6777777777776543 233455556
Q ss_pred HHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc-
Q 012101 368 VDLLGRAG---LLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS- 439 (471)
Q Consensus 368 i~~~~~~g---~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 439 (471)
...|...| ++++|.+.|++.-...+...+..+...|.. .+++++|...+++..+.+ ++..+..|..+|.+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 66665545 566777777766112356666666666666 667777777777776654 34566667777766
Q ss_pred ---CCChHHHHHHHHHhhcCC
Q 012101 440 ---RGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 440 ---~g~~~~A~~~~~~m~~~~ 457 (471)
.+++++|.+.|++..+.+
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 677777777777776655
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=9.7e-19 Score=160.62 Aligned_cols=287 Identities=13% Similarity=0.074 Sum_probs=137.1
Q ss_pred cCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSL 146 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 146 (471)
.|++++|..++++++. | .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 16 ~~~ld~A~~fae~~~~-~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6779999999999954 3 48999999999999999999999753 5888999999999999999999998887
Q ss_pred HHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 012101 147 AVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV 226 (471)
Q Consensus 147 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 226 (471)
..+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7763 45578889999999999999999988864 67779999999999999999999999977 3789
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCCh
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLA 306 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 306 (471)
.++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999999876 267899999999999999999988777665 3444455689999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC------ChhHHHHHHHHHHhcCCHHHH
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP------RFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 380 (471)
++|..+++...... +-....|+.+.-+|++- .+++..+.++....+-.++| +...|..++-.|...++++.|
T Consensus 224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 224 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 99999999887553 33455666665556553 33333333333323224444 456799999999999999988
Q ss_pred HHHHHhC
Q 012101 381 RAMVEGM 387 (471)
Q Consensus 381 ~~~~~~m 387 (471)
...+-+-
T Consensus 302 ~~tm~~h 308 (449)
T 1b89_A 302 IITMMNH 308 (449)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 7755443
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=1.7e-16 Score=155.48 Aligned_cols=398 Identities=7% Similarity=-0.036 Sum_probs=288.0
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchH
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTL 124 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 124 (471)
.|+....|..++.. .+ .|+++.|+.+|++.-. +.+...|...+..+.+.|++++|..+|++..+.. |+...|
T Consensus 9 ~P~~~~~w~~l~~~-~~---~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQ---NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHHH-HH---SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHHH-HH---hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 45444489998884 55 6889999999998743 4566789999999999999999999999998763 677777
Q ss_pred HHHHHHH-hccCCchHHHH----HHHHHHHh-CCCC-CcchHHHHHHHHHh---------cCChhhHHHHhccCCC-CCc
Q 012101 125 PIVLKAS-CQLFALEIGRQ----LHSLAVRL-GLES-NEFCESGFISLYSK---------AGDFEKARKVFDENPE-RKL 187 (471)
Q Consensus 125 ~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~-~~~ 187 (471)
...+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|.++|++..+ |..
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 7666533 45677777665 77766553 5444 45677777776654 6889999999988654 221
Q ss_pred ---chHHHHHHHH-------------HcCCChhHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHcC
Q 012101 188 ---GSWNAIIAGL-------------SQDGRAKEAIDMFIGLK------KCG---FEPDD--------VTMVSVTSACGS 234 (471)
Q Consensus 188 ---~~~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~p~~--------~~~~~li~~~~~ 234 (471)
..|....... .+.+++..|..+++.+. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 1233222210 12355777777776532 111 34442 344444433221
Q ss_pred ----cCCH----HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-
Q 012101 235 ----LGDL----ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK-------CGRMD-------LAYKVFWEIDQ---P- 288 (471)
Q Consensus 235 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~- 288 (471)
.++. ..+..+|++. +... +.+..+|..++..+.+ .|+++ +|..+|++..+ |
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~a--l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQC--LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHH--HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred CCccCCcchhHHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 2233 4677888888 5442 3467788888888875 79987 89999998764 4
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYG 365 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~ 365 (471)
+...|..++..+.+.|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|.++|++..+. .|+ ...|.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~ 394 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYV 394 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHH
Confidence 5778999999999999999999999999985 5542 47888888888899999999999999754 333 23333
Q ss_pred HHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHH
Q 012101 366 CMVDL-LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG----AYVVLSNIYA 438 (471)
Q Consensus 366 ~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~ 438 (471)
..... +...|++++|..+|+.. ...| +...|..++..+.+.|+.++|..+|+++....|.++. .|...+....
T Consensus 395 ~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 22222 34689999999999988 4445 5788999999999999999999999999998776654 7777888888
Q ss_pred cCCChHHHHHHHHHhhcCCC
Q 012101 439 SRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.|+.+.+.++.+++.+.-+
T Consensus 475 ~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 475 NIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HSSCHHHHHHHHHHHHHHTH
T ss_pred HcCCHHHHHHHHHHHHHHCc
Confidence 99999999999998876544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=6e-18 Score=157.80 Aligned_cols=280 Identities=12% Similarity=0.038 Sum_probs=214.1
Q ss_pred hcCChhhHHH-HhccCCC---C----CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARK-VFDENPE---R----KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~-~~~~~~~---~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
..|++++|.+ .|++... . +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 6664321 1 24467788888888888888888888888764 456677888888888888888
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-HhhHHH---------------HHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN-VSSWTS---------------MIVGYA 301 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~---------------li~~~~ 301 (471)
+|...++.+ .+.. +.+..++..+...|...|++++|...|+++.+ |+ ...+.. .+..+.
T Consensus 116 ~A~~~~~~a--l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 116 LAISALRRC--LELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHH--HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888 4443 34677788888888888888888888887654 21 122211 233344
Q ss_pred hCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 302 ANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
..|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999998864221 47888899999999999999999999997652 34567899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHcCCChHHHH
Q 012101 381 RAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS-----------DGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 381 ~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~ 447 (471)
.+.++++ ...| +..++..+..+|.+.|++++|...++++.+..|.+ ..+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999998 4445 57789999999999999999999999999887765 568999999999999999999
Q ss_pred HHHHHh
Q 012101 448 RIRAVM 453 (471)
Q Consensus 448 ~~~~~m 453 (471)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 987643
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=3.8e-16 Score=151.53 Aligned_cols=369 Identities=9% Similarity=-0.047 Sum_probs=294.0
Q ss_pred CChHHHHHHHHHHHhc-ccccCchHHHHHHhcccCCCCchhhHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCcc
Q 012101 48 EDPAKIVATQLSKCTN-LLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTR----LEAPKKALDIYIFMSRAGVLPDCY 122 (471)
Q Consensus 48 ~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 122 (471)
.++. ....|-..|.. .+..++..+|...|++.-...+..++..+-..|.. .+++++|++.|++..+.| +..
T Consensus 37 g~~~-a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 37 GEAK-AQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp TCHH-HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CCHH-HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3445 55566555543 22257899999999877655677889999999998 999999999999998876 566
Q ss_pred hHHHHHHHHhc----cCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHh----cCChhhHHHHhccCCC-CCcchHHHH
Q 012101 123 TLPIVLKASCQ----LFALEIGRQLHSLAVRLGLESNEFCESGFISLYSK----AGDFEKARKVFDENPE-RKLGSWNAI 193 (471)
Q Consensus 123 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l 193 (471)
.+..+-..+.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+ .+..++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777 789999999999998876 56677778888887 7899999999987654 356688888
Q ss_pred HHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 012101 194 IAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLMLNSL 265 (471)
Q Consensus 194 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 265 (471)
...|.. .+++++|+..|++..+.| +...+..+...+.. .+++++|..+|+.. .+.+ +...+..+
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a--~~~~---~~~a~~~l 261 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS--AEQG---NSIAQFRL 261 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HTTT---CHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--HHCC---CHHHHHHH
Confidence 888888 899999999999998875 45566667777764 78999999999998 6554 45667778
Q ss_pred HHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 266 IDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAAN-----GLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 266 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...|.. .+++++|...|++..+ .+...+..+...|... +++++|...|++..+.| +...+..+...|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIY 338 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 888887 8999999999998765 5667788888888887 89999999999999875 345556666666
Q ss_pred ccCC---cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 012101 336 VHGG---KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGMPMKANVVIWGCLMGACEK--- 405 (471)
Q Consensus 336 ~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~--- 405 (471)
...| +.++|.+.|++..+. .+...+..+...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCC
Confidence 6545 889999999999764 456778888899988 89999999999998222367788889999988
Q ss_pred -cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHH
Q 012101 406 -FGNVKMGEWVAKHLQELEPW---SDGAYVVLSNIYA 438 (471)
Q Consensus 406 -~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 438 (471)
.+++++|...|++..+.++. ++.....+..++.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 89999999999999999854 4444445544444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.9e-18 Score=157.31 Aligned_cols=261 Identities=10% Similarity=-0.037 Sum_probs=212.5
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH
Q 012101 186 KLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSL 265 (471)
Q Consensus 186 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 265 (471)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++ .+.. +.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRC--LELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HhcC-CCCHHHHHHH
Confidence 45568888999999999999999999998764 557788889999999999999999999998 5543 3457788999
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--CC-----------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHH
Q 012101 266 IDMYGKCGRMDLAYKVFWEIDQ--PN-----------VSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PNHVTFVGV 331 (471)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l 331 (471)
..+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988765 21 123334578889999999999999999987422 157889999
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV 409 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~ 409 (471)
...+...|++++|.+.++++.+.. +.+..+|..+..+|...|++++|.+.|+++ ...| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998752 345778999999999999999999999998 5555 478999999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 410 KMGEWVAKHLQELEPW------------SDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
++|...++++.+..|. +...|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999987654 246788999999999999999888765
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=1.1e-16 Score=143.60 Aligned_cols=271 Identities=9% Similarity=0.008 Sum_probs=214.2
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 239 (471)
+-....|++..|+..++.....+.. ....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3445678889999888776554322 4456778899999999998866542 3667778888888899999999
Q ss_pred HHHHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
.|.+.++.+ ...+. +.+...+..+..+|...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+
T Consensus 83 ~A~~~l~~l--l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDRE--MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHH--HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988 66654 33566777788999999999999999998 56778899999999999999999999999998
Q ss_pred cCCCCCHHHH---HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CH
Q 012101 319 SGIRPNHVTF---VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NV 393 (471)
Q Consensus 319 ~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 393 (471)
.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|++. ...| +.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 73 554321 123344456699999999999998763 467788999999999999999999999998 5555 67
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 394 VIWGCLMGACEKFGNVKM-GEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
.++..++..+...|+.++ +.++++++.+..|.++. +.+...+.+.++++..-|
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 789999999999999875 67999999999998763 344566666666665544
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.4e-16 Score=153.88 Aligned_cols=366 Identities=11% Similarity=-0.069 Sum_probs=196.5
Q ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHHC-----C--CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhC---C--
Q 012101 86 AFHWNNIIRLYTRLEAPKKALDIYIFMSRA-----G--VLP-DCYTLPIVLKASCQLFALEIGRQLHSLAVRLG---L-- 152 (471)
Q Consensus 86 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-- 152 (471)
...||.+-..+...|++++|++.|++..+. + ..| ...+|+.+..++...|++++|...+++..+.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666654331 1 112 23455666666666666666666666654421 0
Q ss_pred -CC-CcchHHHHHHHHHhc--CChhhHHHHhccCCC--C-CcchHHHHHHH---HHcCCChhHHHHHHHHHHHCCCCCCH
Q 012101 153 -ES-NEFCESGFISLYSKA--GDFEKARKVFDENPE--R-KLGSWNAIIAG---LSQDGRAKEAIDMFIGLKKCGFEPDD 222 (471)
Q Consensus 153 -~~-~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~ 222 (471)
.+ ...++..+..++.+. +++++|.+.|++..+ | +...+..+... +...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01 122333333333332 356666666665432 2 22233333322 334456666666666665542 2233
Q ss_pred HHHHHHHHHH----cCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHH
Q 012101 223 VTMVSVTSAC----GSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTS 295 (471)
Q Consensus 223 ~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 295 (471)
..+..+...+ ...++.++|.+.+++. .... +.+..++..+...|...|++++|...|++..+ .+..++..
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--l~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEA--LEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHH--HHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 3443333322 2334566666666665 3332 23455566666777777777777777766543 23344444
Q ss_pred HHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC
Q 012101 296 MIVGYAA-------------------NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ 356 (471)
Q Consensus 296 li~~~~~-------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 356 (471)
+..+|.. .+.++.|...+++..+.. +.+..++..+...+...|++++|.+.|++..+.
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 4433322 123567788888777653 334556777888899999999999999988754
Q ss_pred CCCChhH----HHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 357 IEPRFAH----YGCMVD-LLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 357 ~~p~~~~----~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
.|+... +..+.. .+...|+.++|.+.|++. .+.|+...... ....+.+++++..+.+|.++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHH
Confidence 343322 222222 234678999999999887 66676443322 23455677788888899999999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceee
Q 012101 431 VVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLAT 468 (471)
Q Consensus 431 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 468 (471)
..++.+|...|++++|++.|++..+.+...+...+|++
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 99999999999999999999999999988888999986
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=2.5e-17 Score=153.61 Aligned_cols=294 Identities=11% Similarity=-0.035 Sum_probs=144.4
Q ss_pred CCCchHHHH-HHHHHHHCCC---CCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh
Q 012101 99 LEAPKKALD-IYIFMSRAGV---LPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK 174 (471)
Q Consensus 99 ~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 174 (471)
.|++++|++ .|++..+... ..+...+..+...+.+.|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 5554433211 1134455666666666666666666666666543 3344556666666666666666
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHh
Q 012101 175 ARKVFDENP---ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQV 251 (471)
Q Consensus 175 a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 251 (471)
|.+.|++.. ..+..++..+...+...|++++|+..++++.... +.+...+..+ +.... . .
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~-------~~~~~-------~--~ 179 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPA-------EEGAG-------G--A 179 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH-------HHHhh-------h--h
Confidence 666665533 2244466666666777777777777777666543 1111111100 00000 0 0
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C---CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 012101 252 KSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P---NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV 326 (471)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 326 (471)
. + ...+..+...+ ..|++++|...|+++.+ | +..++..+...+...|++++|...++++.+.. +.+..
T Consensus 180 ~----~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 252 (368)
T 1fch_A 180 G----L-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred c----c-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHH
Confidence 0 0 00000111112 44455555555544432 2 24445555555555555555555555555432 22344
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC------------CH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA------------NV 393 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~ 393 (471)
.+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++ ...| ..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 55555555556666666666666554431 223445555666666666666666666555 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
.+|..+..++...|++++|..++++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 56666666666666666666665533
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.9e-19 Score=161.61 Aligned_cols=281 Identities=12% Similarity=0.078 Sum_probs=110.5
Q ss_pred ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHH
Q 012101 133 QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIG 212 (471)
Q Consensus 133 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 212 (471)
+.|++++|.++++++ ++..+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445667777777765 22346777777777777777777777543 4555777777777777777777776666
Q ss_pred HHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhh
Q 012101 213 LKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSS 292 (471)
Q Consensus 213 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 292 (471)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+++.|...|++++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN 150 (449)
T ss_dssp ------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT-----TC
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh
Confidence 5553 4456667777777777777777666542 245557777777777788888888777766 37
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 372 (471)
|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|......+ ...+.....++..|.
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHH
Confidence 777777888888888888777776 26677777778888888887775544432 122233446777778
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHcCCCh
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF--GNVKMGEWVAKHLQELEP-----WSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~ 443 (471)
+.|++++|..+++.. +..+ ....|.-+..+|++- ++..+..+.|..-....+ .+...|.-++..|.+.+++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 888888887777776 4443 445666665555543 344444444443222223 3456777778888888888
Q ss_pred HHHHHH
Q 012101 444 EEVERI 449 (471)
Q Consensus 444 ~~A~~~ 449 (471)
+.|...
T Consensus 299 d~A~~t 304 (449)
T 1b89_A 299 DNAIIT 304 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=1.9e-15 Score=148.12 Aligned_cols=368 Identities=9% Similarity=-0.039 Sum_probs=267.1
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+++++.. |+...|..++
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 57789999998 478999999999999998763 4466789999999999999999999999998754 5777777776
Q ss_pred HH-HHhcCChhhHHH----HhccCC------CCCcchHHHHHHHHHc---------CCChhHHHHHHHHHHHCCCCCCHH
Q 012101 164 SL-YSKAGDFEKARK----VFDENP------ERKLGSWNAIIAGLSQ---------DGRAKEAIDMFIGLKKCGFEPDDV 223 (471)
Q Consensus 164 ~~-~~~~g~~~~a~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~ 223 (471)
.. ....|+.+.|.+ +|+... ..+...|...+..... .|+++.|..+|++..+....+...
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 43 345677777665 665431 1234567777776554 688999999999998731111123
Q ss_pred HHHHHHHH---H----------cCcCCHHHHHHHHHHHHH----hhcC---CCCC--------hhHHHHHHHHHHhc---
Q 012101 224 TMVSVTSA---C----------GSLGDLELALQVHKYVFQ----VKSK---QKSD--------TLMLNSLIDMYGKC--- 272 (471)
Q Consensus 224 ~~~~li~~---~----------~~~~~~~~a~~~~~~~~~----~~~~---~~~~--------~~~~~~l~~~~~~~--- 272 (471)
.|...... + .+.+++..|..+++.... .+.. ++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 33322221 1 234567777777766321 2211 2333 24555555433322
Q ss_pred -CCh----HHHHHHHHhcCC---CCHhhHHHHHHHHHh-------CCChh-------HHHHHHHHHHHcCCCCCHHHHHH
Q 012101 273 -GRM----DLAYKVFWEIDQ---PNVSSWTSMIVGYAA-------NGLAN-------EALDCFHYMRESGIRPNHVTFVG 330 (471)
Q Consensus 273 -g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~ 330 (471)
++. +.+..+|++... .+...|..++..+.+ .|+++ +|..++++..+.-.+-+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 366777877664 466788888887775 79987 89999999886322335778888
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHh
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGA-CEK 405 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~-~~~ 405 (471)
++..+.+.|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 888899999999999999999864 5542 47888999999999999999999998 54443 3333332222 346
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.|+.++|..+|++..+..|.++..|..++..+.+.|+.++|..+|++....+.
T Consensus 404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 89999999999999999998889999999999999999999999999988754
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=6.4e-17 Score=148.02 Aligned_cols=261 Identities=8% Similarity=-0.086 Sum_probs=193.0
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+ .+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHA--RMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhcC-cCCHHHHHHHHH
Confidence 345566666666677777777776666543 335556666666666777777777777766 3332 234556666667
Q ss_pred HHHhcCChHHHHHHHHhcCC--C-CHhhHHHH--------------HH-HHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ--P-NVSSWTSM--------------IV-GYAANGLANEALDCFHYMRESGIRPNHVTFV 329 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 329 (471)
.|...|++++|...|+++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 77777777777777766543 1 11222222 22 3667788999999999998764 34677888
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG 407 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~ 407 (471)
.+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++ ...| +..++..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 88899999999999999999997652 345678889999999999999999999998 4444 5778999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC------------CCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 408 NVKMGEWVAKHLQELEPW------------SDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 408 ~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
++++|...++++.+..|. ++..+..++.+|.+.|++++|.+++++..+
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999998887 566888999999999999999999876543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=1.3e-16 Score=148.56 Aligned_cols=258 Identities=11% Similarity=0.001 Sum_probs=144.9
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC---CCCcchHHHHHHHHHc
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP---ERKLGSWNAIIAGLSQ 199 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~ 199 (471)
.+..+...+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...|..
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 34444445555555555555555554433 2334445555555555555555555554432 1233456666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC-CChhHHHHHHH
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPD-----------DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK-SDTLMLNSLID 267 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~ 267 (471)
.|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++++ .+.... .+..++..+..
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--l~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA--AHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHH--HHHSCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhCcCccCHHHHHHHHH
Confidence 666666666666665531 21 122334466677777788888887777 444322 14666777777
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 344 (471)
.|...|++++|...|++..+ .+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 77777777777777776543 345667777777777777777777777776652 22356666677777777777777
Q ss_pred HHHHHHhHHhcCCC----------CChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIE----------PRFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 345 ~~~~~~~~~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
...|+++.+...-. .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 77777765432110 0134555666666666666666555544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=1.7e-16 Score=142.47 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=203.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 012101 194 IAGLSQDGRAKEAIDMFIGLKKCGFEPDD--VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK 271 (471)
Q Consensus 194 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (471)
++-....|+++.|+..++..... .|+. .....+..+|...|+++.|...++ ...+|+...+..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~------~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK------PSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC------TTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc------ccCChhHHHHHHHHHHHcC
Confidence 44566789999999999876543 4543 355677889999999999987542 2355677888999999999
Q ss_pred cCChHHHHHHHHhcC----CC-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 272 CGRMDLAYKVFWEID----QP-NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
.|+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999864 24 456677778999999999999999987 4577888899999999999999999
Q ss_pred HHHHhHHhcCCCCChhHH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 347 FFEMMKNVYQIEPRFAHY---GCMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
.++.+.+. .|+.... ...+..+...|++++|..+|+++ ..+.+...++.+..++.+.|++++|+..++++.+
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999865 4654321 22334445569999999999999 3344778999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHcCCChHH-HHHHHHHhhcCCCc
Q 012101 422 LEPWSDGAYVVLSNIYASRGLWEE-VERIRAVMKHRNLA 459 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 459 (471)
..|.++.++..++.++...|+.++ +.++++++.+.++.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999976 57899988876553
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=171.53 Aligned_cols=165 Identities=12% Similarity=0.158 Sum_probs=128.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-------CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 255 QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEID-------QPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
...-..+|+++|++||+.|++++|.++|.+|. .||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33446689999999999999999999997653 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCcH-HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHH
Q 012101 328 FVGVLSACVHGGKV-QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMK----ANVVIWGCLMGA 402 (471)
Q Consensus 328 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~l~~~ 402 (471)
|+++|.++++.|+. +.|.++|++|.+. |+.||..+|++++.++.+.+-++.+.++...+... |...+...|.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999874 7899999999776 99999999999988777765555555554444111 123344455566
Q ss_pred HHhcC---------CHHHHHHHHHHHH
Q 012101 403 CEKFG---------NVKMGEWVAKHLQ 420 (471)
Q Consensus 403 ~~~~~---------~~~~a~~~~~~~~ 420 (471)
|.+.+ ..++-...|++=.
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 66555 2355555555443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.7e-15 Score=138.42 Aligned_cols=275 Identities=8% Similarity=-0.072 Sum_probs=161.3
Q ss_pred chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHH
Q 012101 85 AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFIS 164 (471)
Q Consensus 85 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 164 (471)
+...|......+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 44556777778888888888888888887654 2355667777777777888888888888777653 334445555555
Q ss_pred HHHhcCChhhHHHHhccCCCCC---cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHcCcCCHH
Q 012101 165 LYSKAGDFEKARKVFDENPERK---LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSV-TS-ACGSLGDLE 239 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~~~~~ 239 (471)
.|...|++++|.+.+++..+.+ ...+..+... .|+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 5555555555555554432211 1111111000 0111111111 11 266777788
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 240 LALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
+|...++.+ .+.. +.+..++..+...|...|++++|...++++.+ .+..+|..+...+...|++++|...++++
T Consensus 156 ~A~~~~~~~--~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAA--LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHH--HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888777 4433 23556677777777777777777777766543 34556666777777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 012101 317 RESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEP----------RFAHYGCMVDLLGRAGLLEEARAMVEG 386 (471)
Q Consensus 317 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 386 (471)
.+.. +.+...+..+...+...|++++|.+.++++.+...-.. +...|..+..++.+.|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6542 23455666666667777777777777776654421100 244555666666666666666666654
Q ss_pred C
Q 012101 387 M 387 (471)
Q Consensus 387 m 387 (471)
.
T Consensus 312 ~ 312 (327)
T 3cv0_A 312 N 312 (327)
T ss_dssp C
T ss_pred H
Confidence 4
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.72 E-value=8.1e-14 Score=142.72 Aligned_cols=352 Identities=14% Similarity=0.067 Sum_probs=257.9
Q ss_pred CCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCC-----chhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCc
Q 012101 47 HEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYS-----AAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDC 121 (471)
Q Consensus 47 ~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 121 (471)
..+|. --...+..|.. .|...+|..+++++...| +....|.++....+. +..+..+..++....
T Consensus 982 ~~~Pe-eVs~~vKaf~~---aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------ 1050 (1630)
T 1xi4_A 982 TQDPE-EVSVTVKAFMT---ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------ 1050 (1630)
T ss_pred ccCHH-HhHHHHHHHHh---CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc------
Confidence 34444 33556666766 666777777777664322 234455566666555 445555555554321
Q ss_pred chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCC
Q 012101 122 YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDG 201 (471)
Q Consensus 122 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 201 (471)
....+...+...|.+++|..+|++.. ......+.+ +-..+++++|.++.++.. +..+|..+..++...|
T Consensus 1051 -d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1051 -DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred -cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 13335667777888888888888742 111112222 226788888888888763 3568889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 202 RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 202 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
++++|++.|.+. -|...|..++.++.+.|++++|.+.+... .+.. ++..+.+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA--rk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA--RKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH--Hhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 999999999653 56778888999999999999999999877 4443 3333444688999999998865554
Q ss_pred HHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh
Q 012101 282 FWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF 361 (471)
Q Consensus 282 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~ 361 (471)
. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+.
T Consensus 1190 I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~ 1250 (1630)
T 1xi4_A 1190 I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NST 1250 (1630)
T ss_pred H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCH
Confidence 3 4567777778889999999999999999984 37889999999999999999999877 345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR- 440 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 440 (471)
.+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++....+++.+...|.-|..+|++.
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence 7888888899999999999887664 4446667778999999999999999999999988887777887777777754
Q ss_pred -CChHHHHHHHH
Q 012101 441 -GLWEEVERIRA 451 (471)
Q Consensus 441 -g~~~~A~~~~~ 451 (471)
++..++.+.|.
T Consensus 1329 peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1329 PQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHHHH
Confidence 45556666555
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.71 E-value=5.9e-14 Score=143.74 Aligned_cols=375 Identities=10% Similarity=0.075 Sum_probs=278.2
Q ss_pred HHHHHHhhhchhhhhHHHHhhhccC--CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHh
Q 012101 21 LLHRLCKTHTFRKHVTISAASSFLD--THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTR 98 (471)
Q Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~ 98 (471)
..+++.....+..+..+.+....-+ +..+.. +.+.|+.+-.+. +.++..+....++. .-..-+...+..
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~-LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRN-LQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAIS 1061 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHH-HHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHh
Confidence 3444555555566666655443211 223455 777788777763 34445555444431 114457888899
Q ss_pred CCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHH
Q 012101 99 LEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKV 178 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 178 (471)
.|.+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++...|++++|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999852 11122233322 678899999998865 3467889999999999999999999
Q ss_pred hccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC
Q 012101 179 FDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD 258 (471)
Q Consensus 179 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 258 (471)
|.+. .|...|..++.++.+.|++++|++.|...++.. ++....+.++.+|++.++++....+ ++ .++
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f------I~---~~n 1194 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF------IN---GPN 1194 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH------Hh---CCC
Confidence 9664 677789999999999999999999999887764 4433344588899999988854443 21 235
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
...+..+.+.|...|++++|..+|... ..|..+..++++.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 556777999999999999999999996 48999999999999999999999876 3668999999999999
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-VVIWGCLMGACEK--FGNVKMGEW 414 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~l~~~~~~--~~~~~~a~~ 414 (471)
|++..|......+ ..+...+..++..|.+.|.+++|..+++.. +..|. ...|.-+...+++ -++..++.+
T Consensus 1264 ~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998876654 345566779999999999999999999887 66653 3466666666654 445566666
Q ss_pred HHHHHHhcCC-----CCCchHHHHHHHHHcCCChHHHHH
Q 012101 415 VAKHLQELEP-----WSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 415 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
+|..-....+ .+...|.-++..|.+.|+++.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 6664444333 345678899999999999999984
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=6.2e-18 Score=167.50 Aligned_cols=128 Identities=14% Similarity=0.086 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccC------CCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLH------SYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPI 126 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 126 (471)
+||+||++|++ .|++++|..+|++|. ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 129 TynaLIdglcK---~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLL---TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHH---HTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 89999999999 788999999997753 369999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCc-hHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 127 VLKASCQLFAL-EIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 127 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
+|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 99999999985 7899999999999999999999999988887766666666655544
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=7.7e-15 Score=141.64 Aligned_cols=376 Identities=9% Similarity=-0.089 Sum_probs=238.9
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccC-----------CCCchhhHHHHHHHHHhCCCchHHH
Q 012101 38 SAASSFLDTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLH-----------SYSAAFHWNNIIRLYTRLEAPKKAL 106 (471)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~ 106 (471)
.......+...... +||.|-..+.. .|+.++|+..|++.- .+....+|+.+...|...|++++|.
T Consensus 39 ~~~~~~~~~~~~a~-~yn~Lg~~~~~---~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 39 FYRTEFQNREFKAT-MCNLLAYLKHL---KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114 (472)
T ss_dssp HHHTTSCC---CCH-HHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCChhHHH-HHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH
Confidence 33344455555566 89999999988 788999988886531 2234668999999999999999999
Q ss_pred HHHHHHHHC-----C-CCC-CcchHHHHHHHHhc--cCCchHHHHHHHHHHHhCCCCCcchHHHHHHH---HHhcCChhh
Q 012101 107 DIYIFMSRA-----G-VLP-DCYTLPIVLKASCQ--LFALEIGRQLHSLAVRLGLESNEFCESGFISL---YSKAGDFEK 174 (471)
Q Consensus 107 ~~~~~m~~~-----g-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~ 174 (471)
..+++..+. + ..+ ...++.....++.. .+++++|...|++..+.. |.+...+..+..+ +...++.++
T Consensus 115 ~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~ 193 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQN 193 (472)
T ss_dssp HHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHH
Confidence 999887542 1 111 23445544444433 457999999999999865 3344555555544 345577788
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHH
Q 012101 175 ARKVFDENP---ERKLGSWNAIIAGLSQ----DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKY 247 (471)
Q Consensus 175 a~~~~~~~~---~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 247 (471)
|.+.+++.. ..+..++..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++.
T Consensus 194 al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp THHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 888887643 3344456555555443 467889999999888764 55677888999999999999999999999
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhc-------------------CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC
Q 012101 248 VFQVKSKQKSDTLMLNSLIDMYGKC-------------------GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL 305 (471)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 305 (471)
. .+.. +.+..++..+..+|... +.++.|...|++..+ .+..++..+...+...|+
T Consensus 273 a--l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 273 A--LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp H--HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred H--HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 8 5543 33566677676666432 235567777766543 455788889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHV--TFVGVLS-ACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
+++|...|++..+....|... .+..+.. .....|+.++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998865444322 1222221 23567999999999999875 35664333222 233344
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 383 MVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 383 ~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+++.. ...| +..+|..+..+|...|++++|.+.|++..+.++.+|..+..++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44444 3334 5678999999999999999999999999999988776665543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-14 Score=127.74 Aligned_cols=217 Identities=9% Similarity=-0.036 Sum_probs=130.0
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C----C----HhhHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P----N----VSSWTS 295 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 295 (471)
..+...+...|++++|...++.. .+.. .+...+..+..+|...|++++|...|++..+ | + ..+|..
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a--~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKA--WELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH--HHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH--HHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 33334444444444444444444 2222 3334444444444444444444444444332 1 1 345556
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 296 MIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
+...+...|++++|...+++..+. .|+.. .+...|++++|...++.+... .+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 666666666666776666666654 33322 234456677777777776542 1223445666777777777
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 376 LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 376 ~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
++++|.+.+++. ...| +..++..+..++...|++++|...++++.+..|.++..+..++.+|.+.|++++|.+.+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777777776 3333 46677777777777788888888888877777777777777777788888888888777777
Q ss_pred hcCC
Q 012101 454 KHRN 457 (471)
Q Consensus 454 ~~~~ 457 (471)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6543
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.2e-14 Score=126.22 Aligned_cols=235 Identities=10% Similarity=-0.064 Sum_probs=185.7
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC----hhHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD----TLMLN 263 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 263 (471)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++...+......++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 357778888888899999999998888776 777888888888888999999999988884333333222 46788
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
.+...|...|++++|...|++..+ |+. ..+...|++++|...++++.... +.+...+..+...+...|++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 888899999999999999888765 442 34566788999999999988752 23456777788889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 342 QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
++|...++++.+.. +.+...+..+...|...|++++|.+.+++. ...| +..++..+..++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999997652 345678888999999999999999999988 4444 5778999999999999999999999999
Q ss_pred HhcC------CCCCchHHHHH
Q 012101 420 QELE------PWSDGAYVVLS 434 (471)
Q Consensus 420 ~~~~------~~~~~~~~~l~ 434 (471)
.+.. |.+...+..+.
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHH
Confidence 8887 65444444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.64 E-value=2e-14 Score=123.18 Aligned_cols=195 Identities=15% Similarity=0.036 Sum_probs=148.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012101 256 KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL 332 (471)
Q Consensus 256 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 332 (471)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566677777788888888888888887654 455677778888888888888888888888763 23456777777
Q ss_pred HHhccC-----------CcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 333 SACVHG-----------GKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 333 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
.++... |++++|...+++..+. .| +...+..+..+|...|++++|.+.|++. .+..+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 778888 9999999999999865 34 4567888899999999999999999998 222688899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
..++...|++++|...++++.+..|.++..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=3.5e-14 Score=126.30 Aligned_cols=241 Identities=10% Similarity=-0.066 Sum_probs=181.2
Q ss_pred cCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 199 QDGRAKEAIDMFIGLKKCGFE---PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+ .+.. +.+..++..+...|...|++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--l~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--LAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHH--HHcC-CCcHHHHHHHHHHHHHccCH
Confidence 346788888888888775321 13556777788888888888888888888 5443 33577888888888888999
Q ss_pred HHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 276 DLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 276 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
++|...|++..+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999888887764 45678888889999999999999999998875 4554444445555567799999999998876
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 353 NVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN-----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 353 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
... +++...+ .++..+...++.++|.+.++.. ...|+ ..++..+..++...|++++|...++++.+..|.+
T Consensus 172 ~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 652 3343344 4777778888889999998887 44442 5788889999999999999999999999988765
Q ss_pred CchHHHHHHHHHcCCChHHHHHHH
Q 012101 427 DGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 427 ~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
.. ....++...|++++|.+.+
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 43 3466777888899988776
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.1e-13 Score=122.97 Aligned_cols=242 Identities=11% Similarity=-0.001 Sum_probs=119.6
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHH
Q 012101 192 AIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSD--TLMLNSLIDMY 269 (471)
Q Consensus 192 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 269 (471)
.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.. ......++ ...|..+...|
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETY--FSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHH--HTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHH--HhccCchhHHHHHHHHHHHHH
Confidence 33444444555555555555544432 122224444444445555555555555544 33111111 11244445555
Q ss_pred HhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
...|++++|...|++..+ .+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 233445555555555555555555555544431 1223333333312222336666666
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHH
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMVDLLGRAGL---LEEARAMVEGM----PMKAN------VVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~l~~~~~~~~~~~~a~ 413 (471)
.|+++.+.. +.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...|...|++++|.
T Consensus 164 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655431 1223444445555555554 44455554444 11122 246777778888888888888
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 414 WVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..++++.+..|.++..+..+......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 88888888888877666666555443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.5e-13 Score=119.12 Aligned_cols=197 Identities=8% Similarity=-0.095 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
..+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 4455556666666666666666665542 345566666666667777777777777666553 224556666666666
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
..|++++|.++++++.. .+..| +...+..+...|...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776654 12333 3445566666677777777777777666 2233 4556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 414 WVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
..++++.+..|.+...+..++.+|.+.|++++|.+.++++.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 777777776666666666777777777777777777777765543
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=3.9e-13 Score=115.49 Aligned_cols=197 Identities=11% Similarity=-0.016 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455555556666666666666655432 334556666666666666666666666666542 23455666666666
Q ss_pred ccC-CcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 336 VHG-GKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 336 ~~~-~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
... |++++|...++++.+ .+..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 667 777777777776654 122232 345666666677777777777777666 3333 35566667777777777777
Q ss_pred HHHHHHHHHhcCC-CCCchHHHHHHHHHcCCChHHHHHHHHHhhcCC
Q 012101 412 GEWVAKHLQELEP-WSDGAYVVLSNIYASRGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 412 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 457 (471)
|...++++.+..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777666 666666666666777777777777777765543
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=3.5e-14 Score=123.80 Aligned_cols=195 Identities=11% Similarity=0.005 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH 337 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 337 (471)
.+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 344444445555555555555554432 234445555555555555555555555555442 2234455555555555
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 415 (471)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666666665554431 223445555555556666666666665555 2222 444555555666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 416 AKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 416 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
++++.+..|.++..+..++.+|.+.|++++|.+.++++.+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 6666666555555566666666666666666666666555433
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=2.1e-13 Score=130.36 Aligned_cols=376 Identities=10% Similarity=-0.006 Sum_probs=223.5
Q ss_pred HHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCc---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 012101 57 QLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAP---KKALDIYIFMSRAGVLPDCYTLPIVLKASCQ 133 (471)
Q Consensus 57 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 133 (471)
+...+.+ .|++++|...|++.-...+..++..+-..|...|+. ++|+..|++..+. +...+..+...+..
T Consensus 9 la~~~~~---~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALK---RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4445555 678899999998876555666777777777778888 8999999888754 45555556554444
Q ss_pred cC-----CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhh---HHHHhccCCC-CCcchHHHHHHHHHcCCChh
Q 012101 134 LF-----ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEK---ARKVFDENPE-RKLGSWNAIIAGLSQDGRAK 204 (471)
Q Consensus 134 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~ 204 (471)
.+ ++++|...|++..+.| +...+..|...|...+..++ +.+.+....+ .+...+..+...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 43 7788999999988866 23366677777777665443 3444443332 34557777888888877655
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC---CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc----CChHH
Q 012101 205 EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG---DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC----GRMDL 277 (471)
Q Consensus 205 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~ 277 (471)
++......+.+.-...+...+..+...|...| +.++|.+.|+.. ...+. ++...+..+...|... +++++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a--a~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG--VSRGT-VTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTTC-SCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH--HHCCC-HHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55544333332212223336677777777788 888888888887 55553 3444445667777554 68888
Q ss_pred HHHHHHhcCCCCHhhHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC-----cHHHHHHHHH
Q 012101 278 AYKVFWEIDQPNVSSWTSMIVG-Y--AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG-----KVQEGKHFFE 349 (471)
Q Consensus 278 A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~ 349 (471)
|..+|++....+...+..+... + ...+++++|...|++..+.| +...+..+-..|. .| ++++|.+.|+
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8888887774345566666665 3 35788888888888888776 4445555555554 34 8888888888
Q ss_pred HhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 012101 350 MMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 350 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 421 (471)
+.. .-+...+..|...|.. ..++++|..+|+..-..-+......|...|.. ..|.++|...+++..+
T Consensus 312 ~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 875 2345556666666655 34888888888887212234455556555553 4578888888888888
Q ss_pred cCCCCCchHHHHHHHH--HcCCChHHHHHHHHHhhcC
Q 012101 422 LEPWSDGAYVVLSNIY--ASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 422 ~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 456 (471)
.+... ....+..+. ...++.++|.++.++....
T Consensus 387 ~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 387 QDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 77533 222232222 2334666777777665554
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=6.6e-14 Score=132.44 Aligned_cols=266 Identities=13% Similarity=0.019 Sum_probs=169.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCC---CCChhHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQ---KSDTLML 262 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 262 (471)
+..+...+...|++++|+..|++..+.+ +.+. ..+..+...+...|++++|...+++..+..... +.....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445556666677777777776666652 1222 345566666666777777777766663221111 1223456
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCC-----------------hhHHHHHHHHH
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGL-----------------ANEALDCFHYM 316 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m 316 (471)
..+...|...|++++|...|++..+ ....++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 6666777777777777777766543 112356666777777777 77777777765
Q ss_pred HHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 317 RES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 317 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
.+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 1111 2235666677778888888888888777553211112 225677778888888888888888776
Q ss_pred -CCC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 388 -PMK---A----NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 388 -~~~---p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
... . ...++..+...+...|++++|...+++..+..+.. ...+..++.+|.+.|++++|.+.+++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111 1 24567778888888888888888888887654221 236777888888888888888888877
Q ss_pred hcC
Q 012101 454 KHR 456 (471)
Q Consensus 454 ~~~ 456 (471)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.2e-12 Score=114.68 Aligned_cols=222 Identities=10% Similarity=-0.085 Sum_probs=108.0
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC----cCCHHHHHHHHHHHHHhhcCCCCChhHH
Q 012101 187 LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS----LGDLELALQVHKYVFQVKSKQKSDTLML 262 (471)
Q Consensus 187 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 262 (471)
..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|++. .+.+ +...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a--~~~~---~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA--CDLN---YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH--HHTT---CHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH--HHCC---CHHHH
Confidence 345555666666666666666666666652 233445555555555 66666666666665 4333 34455
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 263 NSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTSMIVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 263 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555555 5555555555554432 234444444455554 555555555555554443 2333333333
Q ss_pred Hhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 012101 334 ACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEEARAMVEGM-PMKANVVIWGCLMGACE 404 (471)
Q Consensus 334 ~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~ 404 (471)
.|.. .+++++|...|++..+. .+...+..+...|.. .+++++|.+.|++. ... +...+..+...|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 3433 44555555555544332 122333344444444 44444444444443 111 1333344444444
Q ss_pred h----cCCHHHHHHHHHHHHhcCC
Q 012101 405 K----FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 405 ~----~~~~~~a~~~~~~~~~~~~ 424 (471)
. .+++++|.+.+++..+.+|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 4 4444444444444444443
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=7.4e-13 Score=126.53 Aligned_cols=341 Identities=9% Similarity=-0.027 Sum_probs=230.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc---hHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL---EIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
.+...+.+.|++++|+++|++..+.| +...+..+-..+...|+. ++|...|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998876 344555565666667777 8999999998854 5556666766555
Q ss_pred hcC-----ChhhHHHHhccCCCC-CcchHHHHHHHHHcCCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH
Q 012101 168 KAG-----DFEKARKVFDENPER-KLGSWNAIIAGLSQDGRAK---EAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL 238 (471)
Q Consensus 168 ~~g-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 238 (471)
..+ +.++|.+.|++..++ +...+..|...|...+..+ ++.+.+......|. ......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 555 788999999886554 4457888888888776544 34555555554443 33455566666666644
Q ss_pred ----HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhC----C
Q 012101 239 ----ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG---RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAAN----G 304 (471)
Q Consensus 239 ----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~ 304 (471)
+.+..+++.. ...++..+..+...|.+.| ++++|...|++..+ ++...+..+...|... +
T Consensus 158 ~~~~~~a~~~~~~a------~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 158 DQHLDDVERICKAA------LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGHHHHHHHHHHH------TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred ccCHHHHHHHHHHH------HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 4444444443 2233447888999999999 89999999987754 4445446677777554 6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-h--ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-----C
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSA-C--VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG-----L 376 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~ 376 (471)
++++|...|++.. .| +...+..+... + ...+++++|.+.|++..+. | +...+..+...|. .| +
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCC
Confidence 8999999999987 43 33444444444 3 4589999999999999764 3 5667777777777 55 9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc----CCChHHHHH
Q 012101 377 LEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS----RGLWEEVER 448 (471)
Q Consensus 377 ~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 448 (471)
+++|.+.|++.- .-+...+..|...|.. ..++++|...|++..+.+ ++.....|+.+|.. ..+.++|..
T Consensus 303 ~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 999999999998 6678888888877776 349999999999998866 45678889999885 458999999
Q ss_pred HHHHhhcCCCc
Q 012101 449 IRAVMKHRNLA 459 (471)
Q Consensus 449 ~~~~m~~~~~~ 459 (471)
+++...+.|..
T Consensus 380 ~~~~A~~~g~~ 390 (452)
T 3e4b_A 380 FSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHHCCCH
Confidence 99999988764
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.7e-13 Score=127.77 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=132.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHhccCCC--C-C----cchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 012101 158 CESGFISLYSKAGDFEKARKVFDENPE--R-K----LGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEPD-DVTM 225 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~ 225 (471)
.+......+...|++++|...|++..+ + + ...|..+...+...|++++|...+++.... +-.|. ..++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455566666666666666655332 1 2 124555666666666666666666654332 11111 2344
Q ss_pred HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCC--------------------hHHHHHHH
Q 012101 226 VSVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGR--------------------MDLAYKVF 282 (471)
Q Consensus 226 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 282 (471)
..+...+...|++++|...++........... ...++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55555566666666666666655222111110 12345555556666666 55555555
Q ss_pred HhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccCCcHHHHHHHH
Q 012101 283 WEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPN----HVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 283 ~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
++..+ .+ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44322 11 23445555555556666666666555543210 011 124444555555556666666655
Q ss_pred HHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 349 EMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM----PMKAN----VVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 349 ~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...|...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555432111111 234445555555556666555555554 00111 234555555555556666666666
Q ss_pred HHHHhcCCCC
Q 012101 417 KHLQELEPWS 426 (471)
Q Consensus 417 ~~~~~~~~~~ 426 (471)
++..+..+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.3e-12 Score=114.64 Aligned_cols=205 Identities=14% Similarity=0.021 Sum_probs=127.5
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 188 GSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 188 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+ .+.. +
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--~~~~-~----------- 102 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKA--LASD-S----------- 102 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-T-----------
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHHC-c-----------
Confidence 356666666666666666666666666542 334555555555666666666666666655 3322 1
Q ss_pred HHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
.+...+..+...+...|++++|.++++++.+.+..| +...+..+...+...|++++|.+
T Consensus 103 --------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 103 --------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 233344445555555566666666666555422233 34455556666667777777777
Q ss_pred HHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 347 FFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 347 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.++++.+.. +.+...+..+...|...|++++|...++.+ ...| +...+..+...+...|++++|.+.++++.+..|
T Consensus 163 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 163 YFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 777765542 234556677777777788888888777776 3333 556677777788888888888888888888887
Q ss_pred CCCch
Q 012101 425 WSDGA 429 (471)
Q Consensus 425 ~~~~~ 429 (471)
.++..
T Consensus 241 ~~~~~ 245 (252)
T 2ho1_A 241 GSLEY 245 (252)
T ss_dssp TSHHH
T ss_pred CCHHH
Confidence 66543
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=5.6e-12 Score=112.04 Aligned_cols=224 Identities=10% Similarity=-0.045 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCHhhHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK----CGRMDLAYKVFWEIDQ-PNVSSWTS 295 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ 295 (471)
+..++..+...+...|++++|...|+.. .+. .+...+..+...|.. .+++++|...|++..+ .+...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a--~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKA--CDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHH--HHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4566777788888889999999999988 553 345678888888998 9999999999988764 46778888
Q ss_pred HHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHH
Q 012101 296 MIVGYAA----NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCM 367 (471)
Q Consensus 296 li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 367 (471)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+. + +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHH
Confidence 8888888 999999999999988875 66777778888887 89999999999998764 3 55677778
Q ss_pred HHHHHh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 368 VDLLGR----AGLLEEARAMVEGM-PMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 368 i~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...|.. .+++++|.+.|++. .. .+...+..+...|.. .+++++|...+++..+.++ +..+..+..+|.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 888887 89999999999887 32 356778888888888 8999999999999988765 557888888998
Q ss_pred c----CCChHHHHHHHHHhhcCCCc
Q 012101 439 S----RGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~----~g~~~~A~~~~~~m~~~~~~ 459 (471)
+ .+++++|.+.+++..+.+..
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8 89999999999988877653
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=3.8e-13 Score=115.14 Aligned_cols=193 Identities=12% Similarity=-0.052 Sum_probs=107.2
Q ss_pred CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHH
Q 012101 84 SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFI 163 (471)
Q Consensus 84 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 163 (471)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++.++.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455677788888888888888888888887754 3356677777778888888888888888888765 44556677777
Q ss_pred HHHHhc-----------CChhhHHHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 164 SLYSKA-----------GDFEKARKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 164 ~~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
..+.+. |++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 777766 555555555544321 122344444455555555555555555554443 3444444444
Q ss_pred HHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 012101 230 SACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
.++...|++++|...++.. .+.. +.+...+..+..++.+.|++++|...|+
T Consensus 159 ~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKA--LEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHH--HHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHcCCHHHHHHHHHHH--HHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4555555555555555544 2221 1233344444444444444444444443
No 53
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=2.5e-13 Score=124.22 Aligned_cols=267 Identities=13% Similarity=0.046 Sum_probs=185.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCC-CChhHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD----DVTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQK-SDTLML 262 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~~ 262 (471)
+......+...|++++|+..|++..+.. +.+ ...+..+...+...|++++|...++...+... +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556677777888888877777653 222 24566677777777888888877776632211 111 124566
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCC--------------------hhHHHHHH
Q 012101 263 NSLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGL--------------------ANEALDCF 313 (471)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~ 313 (471)
..+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777788888888888887776543 22 2366777778888888 88888888
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 012101 314 HYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMV 384 (471)
Q Consensus 314 ~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 384 (471)
++..+. +..| ....+..+...+...|++++|.+.+++..+...-.++ ...+..+...+...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776432 1112 1345667777888889999999998887643211122 236778888899999999999998
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHcCCChHHHHHHH
Q 012101 385 EGM-PM---KAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 385 ~~m-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
++. .+ .++ ..++..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 887 11 112 4577888899999999999999999987754322 236778999999999999999999
Q ss_pred HHhhcCC
Q 012101 451 AVMKHRN 457 (471)
Q Consensus 451 ~~m~~~~ 457 (471)
++..+..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9887643
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=2.8e-13 Score=118.03 Aligned_cols=209 Identities=12% Similarity=0.055 Sum_probs=132.6
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVG 299 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 299 (471)
..+..+...+...|++++|...++.+ .+.. +.+...+..+...|...|++++|...|++..+ .+...+..+...
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~--l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKA--IEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ------------------CCTTHHHH--HTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHH--HHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33444444555555555555555555 3321 22344555555556666666666666555432 345566667777
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHH
Confidence 777777888888777777653 3356667777777888888888888888876542 3356677788888888888888
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 380 ARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 380 A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
|.+.++++ ...| +..++..+..++...|++++|...++++.+..|.++..+..+....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 88888887 3333 5678888999999999999999999999999988776666554443
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=3.4e-13 Score=119.72 Aligned_cols=234 Identities=9% Similarity=-0.058 Sum_probs=187.1
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCH----hhHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNV----SSWTSM 296 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l 296 (471)
..+......+...|++++|...++.+ .+.. +.+...+..+..+|...|++++|...|++..+ ++. ..|..+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~--l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKL--EAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHH--HHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH--HHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34556677888999999999999999 5543 23556788899999999999999999998765 232 348889
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+. .+.+...+..+...+...++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 335678889999999999999999999999754 23345567677734445569
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCCC-----chHHHHHHHHHcCCCh
Q 012101 377 LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN---VKMGEWVAKHLQELE---PWSD-----GAYVVLSNIYASRGLW 443 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~g~~ 443 (471)
+++|.+.|+++ ...| +...+..+..++...|+ +++|...++++.+.. +.+. ..|..++..|.+.|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998 5555 46788888888988888 888999999988764 3221 4678899999999999
Q ss_pred HHHHHHHHHhhcCCCccCC
Q 012101 444 EEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 444 ~~A~~~~~~m~~~~~~~~~ 462 (471)
++|.+.++++.+..+....
T Consensus 238 ~~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhcCccHHH
Confidence 9999999999887665433
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=8.1e-14 Score=123.92 Aligned_cols=239 Identities=15% Similarity=-0.005 Sum_probs=138.1
Q ss_pred CCCchHHHHHHHHHHHCCCC---CCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhH
Q 012101 99 LEAPKKALDIYIFMSRAGVL---PDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKA 175 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 175 (471)
.|++++|+..|+++.+.... .+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 34555555555555543211 123344445555555555555555555555543 33444555555555556666666
Q ss_pred HHHhccCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh
Q 012101 176 RKVFDENPE---RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVK 252 (471)
Q Consensus 176 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 252 (471)
.+.|++..+ .+..+|..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...++.. ..
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~--~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH--FE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH--HH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH--Hh
Confidence 655554332 23446666777777777777777777777664 344444444444455667777777777666 33
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 012101 253 SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPN-------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 325 (471)
.. +++...+. ++..+...++.++|...+.+..+.+ ...|..+...+...|++++|...|++..+. .|+.
T Consensus 173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 22333333 6666677777777777777766522 366777888888888888888888888765 3432
Q ss_pred HHHHHHHHHhccCCcHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
. .....++...|++++|.+.+
T Consensus 249 ~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C--HHHHHHHHHHHHHHHC----
T ss_pred H--HHHHHHHHHHHHHHhhHHHH
Confidence 1 12233455667777777665
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=3e-12 Score=109.84 Aligned_cols=203 Identities=11% Similarity=-0.008 Sum_probs=131.2
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHH
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVG 299 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 299 (471)
..+..+...+...|++++|.+.++.+ .+.. +.+...+..+...|...|++++|...|++..+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~--~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDA--LKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH--HHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 34444445555555555555555555 3222 22344555555555555666666655555432 344566666777
Q ss_pred HHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH
Q 012101 300 YAAN-GLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 300 ~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 377 (471)
+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCH
Confidence 7777 777777777777776323333 4566667777778888888888888776542 23466777788888888888
Q ss_pred HHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 012101 378 EEARAMVEGM-PMK--ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAY 430 (471)
Q Consensus 378 ~~A~~~~~~m-~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 430 (471)
++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|.++...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888877 322 3556677777777888888888888888888887665443
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=3.6e-12 Score=118.21 Aligned_cols=243 Identities=10% Similarity=0.051 Sum_probs=194.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC-HHHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD-LELALQVHKYVFQVKSKQKSDTLMLNSLID 267 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 267 (471)
.|+.+...+.+.|++++|+..+++..+.. +-+...|..+..++...|+ +++|...++++ +... +.+...|..+..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a--l~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAI--IEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH--HHHC-CCCHHHHHHHHH
Confidence 68888888999999999999999998763 4456788888888888996 99999999998 5544 336778899999
Q ss_pred HHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-CCcHHH
Q 012101 268 MYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVH-GGKVQE 343 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 343 (471)
++...|++++|...|+++.+ .+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999998765 567888899999999999999999999999874 3356778888888887 565566
Q ss_pred H-----HHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 012101 344 G-----KHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAG--LLEEARAMVEGMPMKA-NVVIWGCLMGACEKFG------- 407 (471)
Q Consensus 344 a-----~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~l~~~~~~~~------- 407 (471)
| ...+++..+. .| +...|..+...+...| ++++|.+.+.++...| +...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 6 4778877654 34 4567888888888887 6888988888874445 5668888888888874
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHc
Q 012101 408 --NVKMGEWVAKHL-QELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 408 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 439 (471)
.+++|.++++++ .+.+|.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 88888777778777766543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=9.6e-13 Score=123.98 Aligned_cols=282 Identities=12% Similarity=-0.008 Sum_probs=188.6
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCC----cchHHHHHHHHHhcCChhhHHHHhccCCC-----C----CcchHHHHH
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESN----EFCESGFISLYSKAGDFEKARKVFDENPE-----R----KLGSWNAII 194 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~li 194 (471)
...+...|++++|...++++.+.+ +.+ ..++..+...|...|++++|...|++... . ...++..+.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 334444444444444444444432 111 12344455555555555555555544211 0 133678888
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcCcCC--------------------HHHHHHHHHHHH
Q 012101 195 AGLSQDGRAKEAIDMFIGLKKCGF-EPD----DVTMVSVTSACGSLGD--------------------LELALQVHKYVF 249 (471)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~~~ 249 (471)
..+...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|...++...
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999988765310 112 3477788888999999 999999999874
Q ss_pred HhhcCCC---CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 250 QVKSKQK---SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 250 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
....... ....++..+...|...|++++|...|++..+ ++ ..++..+...+...|++++|...+++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3322221 1234678889999999999999999988764 22 2378888999999999999999999887
Q ss_pred Hc----CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 318 ES----GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 318 ~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
+. +..+. ..++..+...|...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 11111 457778888999999999999999988654222222 456778889999999999999998886
Q ss_pred ------CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 388 ------PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 388 ------~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
+..+ ...++..+...+...|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1111 1234455555555555444
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=5.6e-13 Score=123.63 Aligned_cols=231 Identities=10% Similarity=0.014 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCHhhHHHHH
Q 012101 222 DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR-MDLAYKVFWEIDQ---PNVSSWTSMI 297 (471)
Q Consensus 222 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li 297 (471)
...|..+...+.+.|++++|...++.+ +... +.+..+|+.+..++...|+ +++|...|++..+ .+...|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~a--l~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDA--IELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHH--HHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 345667777788899999999999999 5544 3467889999999999997 9999999998875 5678999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh-cCC
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR-AGL 376 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~ 376 (471)
.++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++.+.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999874 3367788888899999999999999999998762 2356788899999998 666
Q ss_pred HHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC------
Q 012101 377 LEEA-----RAMVEGM-PMKA-NVVIWGCLMGACEKFG--NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG------ 441 (471)
Q Consensus 377 ~~~A-----~~~~~~m-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 441 (471)
.++| .+.+++. .+.| +...|+.+...+...| ++++|.+.++++ +..|.++..+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 5777 4777776 5566 5678999999999888 689999999998 777888788899999998864
Q ss_pred ---ChHHHHHHHHHh-hcCCCc
Q 012101 442 ---LWEEVERIRAVM-KHRNLA 459 (471)
Q Consensus 442 ---~~~~A~~~~~~m-~~~~~~ 459 (471)
.+++|.++++++ .+.++.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG
T ss_pred hHHHHHHHHHHHHHHHHHhCch
Confidence 358999999999 666554
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.47 E-value=6.6e-12 Score=104.27 Aligned_cols=167 Identities=10% Similarity=0.026 Sum_probs=132.3
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
++..|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 45667777888888888888888888877753 2346677777788888888888888888886542 33455666777
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH
Q 012101 369 DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV 446 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 446 (471)
..+...++++.|.+.+.+. ...| +...+..+..++.+.|++++|++.+++..+..|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7888888888888888887 3344 5678888888999999999999999999999998888899999999999999999
Q ss_pred HHHHHHhhcCCC
Q 012101 447 ERIRAVMKHRNL 458 (471)
Q Consensus 447 ~~~~~~m~~~~~ 458 (471)
.+.|++..+.++
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 999998877654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=1.6e-12 Score=125.00 Aligned_cols=192 Identities=8% Similarity=-0.071 Sum_probs=147.5
Q ss_pred ChhHHHHHHHHHHhcCCh-HHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRM-DLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS 333 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 333 (471)
+...+..+..+|...|++ ++|...|++..+ .+...|..+...|...|++++|...|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 455555556666666666 666666655443 33566777777777788888888888887765 466677777778
Q ss_pred HhccC---------CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc--------CCHHHHHHHHHhC-CCCC----
Q 012101 334 ACVHG---------GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA--------GLLEEARAMVEGM-PMKA---- 391 (471)
Q Consensus 334 ~~~~~---------~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 391 (471)
.+... |++++|.+.+++..+.. +.+...|..+..+|... |++++|.+.|++. .+.|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 88888998888887652 23466788888888888 8899999998888 5455
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHh
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVM 453 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 453 (471)
+...|..+..+|...|++++|.+.|+++.+..|.++..+..+..++...|++++|.+.++++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67788999999999999999999999999999988888889999999999999988755443
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=8.9e-13 Score=124.64 Aligned_cols=268 Identities=13% Similarity=0.026 Sum_probs=162.7
Q ss_pred hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc----chHHHHHHHHHhcCChhhHHHHhccCCCC---------Ccch
Q 012101 123 TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNE----FCESGFISLYSKAGDFEKARKVFDENPER---------KLGS 189 (471)
Q Consensus 123 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~ 189 (471)
.+..+...+...|++++|...++++.+.+ +.+. ..+..+...|...|++++|.+.|++..+. ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556777888888888888887764 2222 35666667777777777777776553211 1124
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcC-CCCChhHHHHHHHH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSK-QKSDTLMLNSLIDM 268 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 268 (471)
+..+...|...|++++|+..+++..+... ..+ ......++..+...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------------------~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR---------------------------------QLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------------------HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------------------HhhchHHHHHHHHHHHHH
Confidence 55555555556666666665555543200 000 00112234444455
Q ss_pred HHhcCC-----------------hHHHHHHHHhcCC---------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-
Q 012101 269 YGKCGR-----------------MDLAYKVFWEIDQ---------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI- 321 (471)
Q Consensus 269 ~~~~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~- 321 (471)
|...|+ +++|...+++..+ ....++..+...+...|++++|...+++..+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 555555 5555554444321 1123566666777777777777777777654310
Q ss_pred CCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC------
Q 012101 322 RPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM------ 387 (471)
Q Consensus 322 ~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m------ 387 (471)
.++ ...+..+...|...|++++|...+++......-..+ ...+..+...|...|++++|.+.+++.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011 225667777788888888888888777553211111 456777888888889999988888876
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 388 -PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 388 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+..+ ...++..+..+|...|++++|...+++..++..
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 1111 234777888889999999999999998887654
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=7.5e-12 Score=117.14 Aligned_cols=229 Identities=7% Similarity=-0.022 Sum_probs=128.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC----ChhHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKC----GFEP-DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS----DTLMLN 263 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 263 (471)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+.+..+....... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556677777777777776543 1111 2245666666677777777777777766332222211 123566
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CC-CCCHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRES----GI-RPNHVTFV 329 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~~~ 329 (471)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666677777777777776665542 11 135566666677777777777777666541 22 22244566
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGL---LEEARAMVEGMPMKANV-VIWGCLMGA 402 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~l~~~ 402 (471)
.+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ .++|..++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6666667777777777776665432111111 1223445555556666 56666666666433332 345555566
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012101 403 CEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|++++|...+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=8.6e-11 Score=116.31 Aligned_cols=411 Identities=9% Similarity=-0.055 Sum_probs=274.0
Q ss_pred CCCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCC--CCchhhHHHHHHHHHhCCC---chHHHHHHHHHHHCC-CC
Q 012101 45 DTHEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHS--YSAAFHWNNIIRLYTRLEA---PKKALDIYIFMSRAG-VL 118 (471)
Q Consensus 45 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~ 118 (471)
.-.|.....|..++..+.+ .+.+..++.+|+++-. +.+...|..-+..-.+.|+ ++.+..+|++..... .+
T Consensus 60 ~~np~d~~~W~~yi~~~~~---~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~ 136 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVS---LKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGN 136 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCC
T ss_pred HHCcCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCC
Confidence 3344444499999999988 6778999999987642 4566788899999899999 999999999998764 14
Q ss_pred CCcchHHHHHHHHhccCCc--------hHHHHHHHHHHH-hCC-CCC-cchHHHHHHHHHh---------cCChhhHHHH
Q 012101 119 PDCYTLPIVLKASCQLFAL--------EIGRQLHSLAVR-LGL-ESN-EFCESGFISLYSK---------AGDFEKARKV 178 (471)
Q Consensus 119 p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~---------~g~~~~a~~~ 178 (471)
|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++++.+.++
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~i 216 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKL 216 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHH
Confidence 7888888777766555543 345577887665 465 554 3577777765432 3457788999
Q ss_pred hccCCCC---Ccc-hH---HHHHHHHH----------cCCChhHHHHHHHHHHH--CCC----C-----------C----
Q 012101 179 FDENPER---KLG-SW---NAIIAGLS----------QDGRAKEAIDMFIGLKK--CGF----E-----------P---- 220 (471)
Q Consensus 179 ~~~~~~~---~~~-~~---~~li~~~~----------~~~~~~~a~~~~~~m~~--~g~----~-----------p---- 220 (471)
|++...- +.. .| ..+..... ...+++.|...+.++.. .++ + |
T Consensus 217 y~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 217 YKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 9876532 111 22 22222210 01123344455544322 111 1 1
Q ss_pred -C---HHHHHHHHHHHcCcC-------CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH-HHHHhcCC-
Q 012101 221 -D---DVTMVSVTSACGSLG-------DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAY-KVFWEIDQ- 287 (471)
Q Consensus 221 -~---~~~~~~li~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~- 287 (471)
+ ...|...+..--..+ ..+.+..+|+++ +.. ++.+..+|-..+..+.+.|+.++|. .+|++...
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~a--L~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~ 373 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA--AQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC 373 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH--HHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHH--HHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1 123333333322221 123456678877 443 3446778888888888899999996 99987764
Q ss_pred --CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHhccCCcHHHH
Q 012101 288 --PNVSSWTSMIVGYAANGLANEALDCFHYMRESGI---------RPN------------HVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 288 --~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a 344 (471)
.+...|-..+...-+.|++++|.++|+++.+... .|+ ...|...+....+.|+.+.|
T Consensus 374 ~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 374 IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHH
Confidence 3555677788888899999999999999886410 132 23567777777778899999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 345 KHFFEMMKNVYQIEPRFAHYGCMVDLLGRA-GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
..+|..+.+..+ .+....|...+..-.+. ++.+.|.++|+.. ...| +...|...+......|+.+.|..+|+++..
T Consensus 454 R~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 454 RKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999976411 12233444333333344 4589999999988 2233 556777888888889999999999999998
Q ss_pred cCCC---CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCC
Q 012101 422 LEPW---SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 422 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 462 (471)
..++ ....|...+..-.+.|+.+.+.++.+++.+..+...+
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 7763 2346778888888999999999999999887765433
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.43 E-value=4.7e-12 Score=118.55 Aligned_cols=228 Identities=7% Similarity=-0.023 Sum_probs=170.6
Q ss_pred HHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----HhhHH
Q 012101 228 VTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN-----VSSWT 294 (471)
Q Consensus 228 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 294 (471)
....+...|++++|...++...+.....+. ...++..+...|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 555677899999999999998332222222 346788899999999999999998887653 22 35778
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CC-CCChhHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGI-RPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QI-EPRFAHYG 365 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~-~p~~~~~~ 365 (471)
.+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998775311 111 2467788889999999999999999887621 22 22345688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PM-----KA-NVVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+...|.+.|++++|.+.+++. .+ .| ....+..+...+...|+ +++|..++++.. ..+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence 8999999999999999999987 11 22 22345677788889999 777777776651 11222346778999
Q ss_pred HHHcCCChHHHHHHHHHhhcC
Q 012101 436 IYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=9.9e-12 Score=113.53 Aligned_cols=133 Identities=10% Similarity=-0.019 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 362 (471)
++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4455555666666666666666655432 1000 1225566666677777777777777766543211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
++..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++..+..+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5666777788888888888887776 1111 134677788888899999999999988887654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=1.7e-10 Score=104.42 Aligned_cols=218 Identities=11% Similarity=0.045 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-------CcCCH-------HHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 204 KEAIDMFIGLKKCGFEPDDVTMVSVTSACG-------SLGDL-------ELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 204 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
++|..+|++..... +-+...|..+...+. +.|++ ++|..+|++. +..-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA--l~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA--ISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH--HTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH--HHHhCcccHHHHHHHHHHH
Confidence 67778888877652 445666766666654 34665 8888888888 5532234566888888888
Q ss_pred HhcCChHHHHHHHHhcCC--CC-Hh-hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hccCCcHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ--PN-VS-SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA-CVHGGKVQEG 344 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a 344 (471)
.+.|++++|..+|++..+ |+ .. .|..+...+.+.|++++|..+|++..+.. +++...|...... +...|+.++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988765 33 33 78888888888999999999999988763 2334444433332 2236899999
Q ss_pred HHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 012101 345 KHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-P---MKA--NVVIWGCLMGACEKFGNVKMGEWVAKH 418 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 418 (471)
..+|+...+.. +-+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999987764 235678888889999999999999999988 2 355 356888888888999999999999999
Q ss_pred HHhcCCCCC
Q 012101 419 LQELEPWSD 427 (471)
Q Consensus 419 ~~~~~~~~~ 427 (471)
+.+..|.+.
T Consensus 267 a~~~~p~~~ 275 (308)
T 2ond_A 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHccccc
Confidence 999888654
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=1.1e-11 Score=102.77 Aligned_cols=160 Identities=13% Similarity=-0.007 Sum_probs=86.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcC
Confidence 333334444444444444333221 1223334444444444445555555544443321 1233444455555555555
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 377 LEEARAMVEGM-PM-KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 377 ~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++|.+.++++ .. +.+...+..+..++...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.
T Consensus 92 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 92 YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555 21 22455666666677777777777777777777776666667777777777777777777777766
Q ss_pred cCCCc
Q 012101 455 HRNLA 459 (471)
Q Consensus 455 ~~~~~ 459 (471)
+....
T Consensus 172 ~~~~~ 176 (186)
T 3as5_A 172 ELDEG 176 (186)
T ss_dssp HHHHC
T ss_pred HcCCC
Confidence 55433
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=5.4e-10 Score=103.99 Aligned_cols=261 Identities=10% Similarity=0.018 Sum_probs=109.5
Q ss_pred HHHHhcCChhhHHHHhccC----CCCCcc----hHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDEN----PERKLG----SWNAIIAGLSQDGRAKEAIDMFIGLKKCGF-EPDD----VTMVSVTS 230 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~----~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~li~ 230 (471)
..+...|++++|...+++. +..+.. +++.+...+...|++++|...+++...... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444556666665555432 111111 334444555555666666655555443210 0111 12333444
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhc--CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C------CHhhHHHHH
Q 012101 231 ACGSLGDLELALQVHKYVFQVKS--KQK--S-DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P------NVSSWTSMI 297 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 297 (471)
.+...|++++|...+++...... +.. | ....+..+...|...|++++|...+++..+ + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 45555555555555555522111 110 1 122334444555555555555555544321 0 112344444
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhccCCcHHHHHHHHHHhHHhcCCCC--ChhHHHHHHH
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPN--HVTFV----GVLSACVHGGKVQEGKHFFEMMKNVYQIEP--RFAHYGCMVD 369 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~ 369 (471)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++.......-.+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 455555555555555555443211111 11111 111224445555555555555432110000 0112334444
Q ss_pred HHHhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 370 LLGRAGLLEEARAMVEGM-------PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
.+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++..+..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 555555555555555444 111111 1333344445555555555555555554433
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=8.1e-13 Score=119.60 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=102.1
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc----C-CC
Q 012101 189 SWNAIIAGLSQDGRAKEAIDMFIGLKKC-------GFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS----K-QK 256 (471)
Q Consensus 189 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~ 256 (471)
++..+...+...|++++|+.+++++.+. ..+.....+..+...+...|++++|...++....... + .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 6788888888899999999999888763 2233445677777778888888888888887732211 1 12
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc------
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----------PNVSSWTSMIVGYAANGLANEALDCFHYMRES------ 319 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------ 319 (471)
....++..+...|...|++++|...|++..+ .....+..+...+...|++++|.++++++.+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2345666677777777777777777665432 11234555555666666666666666665543
Q ss_pred CCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 320 GIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 320 ~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..|+ ..++..+...+...|++++|.+.++++.+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23444555555566666666666665543
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=4.2e-11 Score=99.35 Aligned_cols=166 Identities=16% Similarity=0.053 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+..+|..+...|.+.|++++|...|++..+ .+..+|..+..+|.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456778888888888888888888887654 456778888888888999999999888887763 3345566667777
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a 412 (471)
+...++++.|...+.+..... +.+...+..+...|.+.|++++|.+.|++. .+.| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 888899999999998887652 345667888888999999999999999988 5455 567889999999999999999
Q ss_pred HHHHHHHHhcCCCC
Q 012101 413 EWVAKHLQELEPWS 426 (471)
Q Consensus 413 ~~~~~~~~~~~~~~ 426 (471)
.+.|+++.+.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999888754
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.7e-10 Score=107.61 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=122.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC----ChhHHH
Q 012101 193 IIAGLSQDGRAKEAIDMFIGLKKCGF-EPD----DVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKS----DTLMLN 263 (471)
Q Consensus 193 li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 263 (471)
....+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+++..+....... ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777654311 122 235556666677777777777777766322222111 133555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRE-----SGIRPNHVTFV 329 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~ 329 (471)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 666666677777776666655432 11 23455566666666666666666666554 21 11244555
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGL---LEEARAMVEGMPMKANV-VIWGCLMGA 402 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~l~~~ 402 (471)
.+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ ..+|...++..+..|+. ..+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 5566666666666666666665543211111 2233344444445555 55555555555333322 244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 012101 403 CEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|++++|...+++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5566666666665555543
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=4.3e-09 Score=104.19 Aligned_cols=398 Identities=10% Similarity=0.020 Sum_probs=264.2
Q ss_pred chhHHHHHHhhhchhhhhHHHHhhhccCCCCChHHHHHHHHHHHhcccccCc---hHHHHHHhcccCC-C---CchhhHH
Q 012101 18 SHPLLHRLCKTHTFRKHVTISAASSFLDTHEDPAKIVATQLSKCTNLLQLNQ---IYAHIIRTHMLHS-Y---SAAFHWN 90 (471)
Q Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~a~~~~~~~~~-~---~~~~~~~ 90 (471)
...+++.+.+......++.+.+. ++..-|.....|..-+..-.+ .++ ...+..+|++.-. - |++..|.
T Consensus 69 W~~yi~~~~~~~~~~~aR~vyEr--aL~~fP~~~~lW~~Yi~~E~~---~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 69 YVKLLKHHVSLKQWKQVYETFDK--LHDRFPLMANIWCMRLSLEFD---KMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH--HHHHCTTCHHHHHHHHHHHHT---C--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 33455555555566666666663 334345544489988888777 566 9999999997542 2 7888898
Q ss_pred HHHHHHHhCCCc--------hHHHHHHHHHHH-CCC-CCC-cchHHHHHHHHhc---------cCCchHHHHHHHHHHHh
Q 012101 91 NIIRLYTRLEAP--------KKALDIYIFMSR-AGV-LPD-CYTLPIVLKASCQ---------LFALEIGRQLHSLAVRL 150 (471)
Q Consensus 91 ~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~ 150 (471)
.-+....+.++. +...++|+.... -|. .|+ ...|...+..... .++++.+..+|+..+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 888776665554 334578887654 365 554 3566666655432 33567888999988752
Q ss_pred CCCCCcchHHHHHHHHHh-------------cCChhhHHHHhcc-------CCC--------------C--C------cc
Q 012101 151 GLESNEFCESGFISLYSK-------------AGDFEKARKVFDE-------NPE--------------R--K------LG 188 (471)
Q Consensus 151 ~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~-------~~~--------------~--~------~~ 188 (471)
....-..+|......-.. ..+++.|...+.+ +.. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 211112233222111111 1123334444422 111 0 1 11
Q ss_pred hHHHHHHHHHcCC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH-HHHHHHHHhhcCCCCChh
Q 012101 189 SWNAIIAGLSQDG-------RAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL-QVHKYVFQVKSKQKSDTL 260 (471)
Q Consensus 189 ~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~ 260 (471)
.|...+..--..+ ..+.+..+|++.... ++-+...|...+..+...|+.+.|. .+++.. .. .++.+..
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA--i~-~~P~s~~ 379 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLG--QQ-CIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH--HH-HCTTCHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH--HH-hCCCCHH
Confidence 3555554333322 123456778887765 3556777887777777888888896 999988 54 3455677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-------------CC------------HhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ-------------PN------------VSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
.+-..+...-+.|++++|..+|+++.+ |+ ...|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888999999999999999998764 21 23677888888888999999999999
Q ss_pred HHHc-C-CCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 012101 316 MRES-G-IRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA- 391 (471)
Q Consensus 316 m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 391 (471)
..+. + ..+......+.+.-. ..++.+.|.++|+...+.++ -+...|...++.....|+.+.|..+|++. ...|
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9876 2 222233333333322 23569999999999988753 45566778888888999999999999998 4334
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 392 ---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 392 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
....|...+..-.+.|+.+.+..+.+++.+..|.++
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 346889999989999999999999999999998765
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=5.7e-12 Score=113.97 Aligned_cols=248 Identities=11% Similarity=0.052 Sum_probs=157.8
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCC--------CC---cchHHHHHHHHHcCCChhHHHHHHHHHHHC------C
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPE--------RK---LGSWNAIIAGLSQDGRAKEAIDMFIGLKKC------G 217 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 217 (471)
+..++..+...|...|++++|..+|++..+ .+ ..++..+...+...|++++|+..+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345678888999999999999999987653 12 236888899999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC----
Q 012101 218 F-EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKS----K-QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---- 287 (471)
Q Consensus 218 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 287 (471)
- +.....+..+...+...|++++|...++.+..... + .+.....+..+...|...|++++|...|++..+
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 22356778888899999999999999998843221 1 223456788889999999999999999887643
Q ss_pred -------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC
Q 012101 288 -------PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR 360 (471)
Q Consensus 288 -------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~ 360 (471)
....++..+...+...|++++|...++++.+.. |+. .+..+- ........ .
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~----------------~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM----------------H 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------H
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------H
Confidence 123467788889999999999999999887641 100 000000 00000000 0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...+..+...+...+.+.++...++.. ...| +..++..+..+|.+.|++++|...+++..++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 011111222233334444444445544 2233 344677777777777888888877777766544
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=8.1e-10 Score=99.87 Aligned_cols=214 Identities=7% Similarity=-0.046 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHHhcCC---C-CHhhHHHHHHHH
Q 012101 239 ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYG-------KCGRM-------DLAYKVFWEIDQ---P-NVSSWTSMIVGY 300 (471)
Q Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~ 300 (471)
++|..+|+++ +... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+
T Consensus 33 ~~a~~~~~~a--l~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQC--LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHH--HHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 6788899888 5433 446777888877775 35886 899999998654 3 456899999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH-hcCCH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNH-V-TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG-RAGLL 377 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~ 377 (471)
...|++++|..+|++..+. .|+. . .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999974 5543 3 78888888999999999999999997542 233444544333322 36999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC-CCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE---PW-SDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
++|.++|++. ...| +...|..++..+.+.|++++|..+|+++.+.. |. +...|..++..+.+.|+.++|..+++
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998 3334 67789999999999999999999999999963 32 34578888999999999999999999
Q ss_pred HhhcCCCc
Q 012101 452 VMKHRNLA 459 (471)
Q Consensus 452 ~m~~~~~~ 459 (471)
++.+..+.
T Consensus 266 ~a~~~~p~ 273 (308)
T 2ond_A 266 RRFTAFRE 273 (308)
T ss_dssp HHHHHTTT
T ss_pred HHHHHccc
Confidence 99876654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=4.4e-11 Score=111.70 Aligned_cols=228 Identities=9% Similarity=-0.029 Sum_probs=167.1
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----HhhH
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKS---DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PN-----VSSW 293 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~ 293 (471)
.....+...|++++|...+++.......... ...++..+...|...|+++.|...+++..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3444567889999999999998332222221 245788899999999999999988877643 22 3567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CCCCChhHHH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QIEPRFAHYG 365 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~~~~~~ 365 (471)
+.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|.+.+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88899999999999999999987653 1111 23467778888999999999999999887621 1122356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM----PM--KAN-VVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|...+++... .+.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHH
Confidence 8889999999999999999987 11 232 3456666677778888 7777777766211 1222346778999
Q ss_pred HHHcCCChHHHHHHHHHhhc
Q 012101 436 IYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (471)
.|.+.|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=8.3e-11 Score=113.05 Aligned_cols=207 Identities=10% Similarity=-0.077 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCH-HHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012101 203 AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDL-ELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKV 281 (471)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (471)
.++++..++...... +.+...+..+..++...|++ ++|.+.|++. ++.. +.+...+..+..+|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKA--VKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHH--HhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555544331 33555666666666677777 7777777666 3332 22455666677777777777777777
Q ss_pred HHhcCC--CCHhhHHHHHHHHHhC---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC--------CcHH
Q 012101 282 FWEIDQ--PNVSSWTSMIVGYAAN---------GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG--------GKVQ 342 (471)
Q Consensus 282 ~~~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------~~~~ 342 (471)
|++..+ |+...+..+...+... |++++|...+++..+.. +-+...+..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 766554 5556666666666666 77777777777776653 22455666666666666 7777
Q ss_pred HHHHHHHHhHHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 343 EGKHFFEMMKNVYQIEP----RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+|.+.|++..+. .| +...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777654 34 5566777777777777777777777776 4444 4456677777777777777776544
Q ss_pred H
Q 012101 417 K 417 (471)
Q Consensus 417 ~ 417 (471)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=2.7e-10 Score=94.19 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 259 TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778888999999999999998876 456788888999999999999999999988763 44677788888899
Q ss_pred ccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 012101 336 VHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997652 346678888999999999999999999998 3333 6778999999999999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 012101 414 WVAKHLQELEPWSDG 428 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (471)
..++++.+..|.++.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999988776553
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=7.4e-11 Score=118.16 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=129.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCM 367 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 367 (471)
..+|+.+...|.+.|++++|++.|++..+. .| +...+..+..+|.+.|++++|++.|++..+. .|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 356777777778888888888888877765 34 3567777778888888888888888887754 343 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 368 VDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 368 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
..+|.+.|++++|.+.|++. .+.| +...|+.+..++...|++++|++.|+++.++.|.++..+..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888887 5556 466888899999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhc
Q 012101 446 VERIRAVMKH 455 (471)
Q Consensus 446 A~~~~~~m~~ 455 (471)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.25 E-value=4.3e-10 Score=96.78 Aligned_cols=204 Identities=8% Similarity=0.022 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHH
Q 012101 220 PDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSM 296 (471)
Q Consensus 220 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 296 (471)
.|+..+......+...|++++|...|+.. ++...+++...+..+..+|...|++++|...|++..+ .+...|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a--l~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEY--LKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHH--HhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 45667777777888888888888888888 5555435666666678888888888888888877654 344567777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHH
Q 012101 297 IVGYAANGLANEALDCFHYMRESGIRPNH-------VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGC 366 (471)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~ 366 (471)
...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+ +.|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 788888888888888888877652 2223 3455666667777888888888887763 3454 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PM-KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
+..+|...|+. .++.+ .+ ..+...+.... ....+.+++|...+++..++.|.++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 66666554432 22222 11 11233333332 2344567888888888888888776655555443
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.25 E-value=2.9e-09 Score=99.02 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=120.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhccCCchHHHHHHHHHHHhCCC-CCc----chHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY----TLPIVLKASCQLFALEIGRQLHSLAVRLGLE-SNE----FCESG 161 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 161 (471)
.....+...|++++|...+++........+.. .+..+...+...|+++.|...+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445667888888888888877653221211 3444555667778888888888777653211 111 22344
Q ss_pred HHHHHHhcCChhhHHHHhccCCC-------C---C-cchHHHHHHHHHcCCChhHHHHHHHHHHHCCCC--C--CHHHHH
Q 012101 162 FISLYSKAGDFEKARKVFDENPE-------R---K-LGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFE--P--DDVTMV 226 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~-------~---~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~ 226 (471)
+...+...|++++|.+.+++... + . ...+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 55666667777777666654321 1 0 113455566666677777777777665543211 1 123455
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCCCC-------HhhHHH
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLN----SLIDMYGKCGRMDLAYKVFWEIDQPN-------VSSWTS 295 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~ 295 (471)
.+...+...|++++|...+++................ ..+..+...|++++|...+++..+++ ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 5556666667777777776666221111111111111 12233556666666666666655421 112334
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 012101 296 MIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~m~ 317 (471)
+...+...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555443
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=1.3e-10 Score=100.15 Aligned_cols=193 Identities=12% Similarity=-0.015 Sum_probs=141.1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVL 332 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 332 (471)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|...+++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3556777888888899999999998887653 566677778888888999999999999888753 22456777788
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPR-F-------AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN---VVIWGCLM 400 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l~ 400 (471)
.++...|++++|.+.+++..+.. |+ . ..|..+...+...|++++|.+.|++. ...|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 88888899999999998887652 33 3 44677777888889999999988887 66776 34666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 401 GACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
.+|... +...++++....+.++..|.... ....+.+++|...+++..+..+..
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC
Confidence 776544 44556666666655544443332 334566899999999998876543
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=4e-09 Score=92.93 Aligned_cols=240 Identities=11% Similarity=0.020 Sum_probs=167.1
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELAL 242 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 242 (471)
+-..-.|++..+..-...+...+.. .-.-+.+++...|++.... .-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HH
Confidence 4445579998888866665433332 3334557888888876421 2234444544444443 322 66
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCHhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 012101 243 QVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-----PNVSSWTSMIVGYAANGLANEALDCFHYMR 317 (471)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 317 (471)
..+++. ...+ .++......+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 87 ~~l~~l--~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 87 EELENL--LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHT--TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766 5544 34455556888999999999999999998743 245677788899999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHhcc----CCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 318 ESGIRP-----NHVTFVGVLSACVH----GGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 318 ~~~~~p-----~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
+. .| +..+...+..++.. .++.+.|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 66 36666677766332 34899999999999754 355333334445888999999999999865
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 388 PM----------KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 388 ~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.. .| |..++..++......|+ +|.++++++.+..|.++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 32 24 55677567666666787 88999999999999876
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.16 E-value=1.6e-10 Score=102.64 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++.+|.+.|++++|.+.+++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555666667777777777777666544
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=2.5e-09 Score=95.82 Aligned_cols=215 Identities=13% Similarity=0.023 Sum_probs=101.3
Q ss_pred ChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHcCcCCHHHHHHHH
Q 012101 171 DFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEPD-DVTMVSVTSACGSLGDLELALQVH 245 (471)
Q Consensus 171 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 245 (471)
++++|...|++ ....|...|++++|...|++..+. |-+++ ..+|..+..+|.+.|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666666543 355666667777777666655432 21111 235555555555566666666655
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhC-CChhHHHHHHHHHHHcCC---
Q 012101 246 KYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAAN-GLANEALDCFHYMRESGI--- 321 (471)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~--- 321 (471)
+...+... ..|+...+ ..+++.+...|... |++++|+..|++..+...
T Consensus 101 ~~Al~l~~-----------------~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIFT-----------------HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHH-----------------HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-----------------HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 55521111 11111111 12344455555553 666666665555543210
Q ss_pred CC-C-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 322 RP-N-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF-----AHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 322 ~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
.+ . ..++..+...+...|++++|...|++..+...-.+.. ..|..+..++...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 00 0 2345555556666666666666666655431111111 13444555566666666666666665 434432
Q ss_pred H------HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCC
Q 012101 394 V------IWGCLMGACE--KFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 394 ~------~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~ 424 (471)
. .+..++.++. ..+++++|...|+++.+++|
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 1 2333344443 23445555555555444443
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.10 E-value=2.6e-09 Score=94.79 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=103.0
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhh-----cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-----------
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVK-----SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ----------- 287 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 287 (471)
++..+...+...|++++|...++.+.... ...+....++..+...|...|++++|...|.+..+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 34444444444555555555544442111 00111233445555555555555555555544332
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhc-----
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRES------GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVY----- 355 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----- 355 (471)
....++..+...+...|++++|...+++..+. +-.| ...++..+...|...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 11234555666666677777777777666543 1122 24456667777777888888888877775431
Q ss_pred -CCCCC-hhHHHHHHHHHHh------cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 012101 356 -QIEPR-FAHYGCMVDLLGR------AGLLEEARAMVEGMP-MKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 356 -~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~m~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
...+. ...|..+...+.. ...+..+...++..+ ..| ...++..+..+|...|++++|...+++..+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2223333333322 223445555555553 334 3457888889999999999999999988764
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1e-08 Score=90.32 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=129.9
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
+.++|...|+++... -..+.......+.. |...+ |+..|++....+ .++..++..+..++...|++++|
T Consensus 51 ~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeA 119 (310)
T 3mv2_B 51 KAKTLLALGQYQSQD-----PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKS 119 (310)
T ss_dssp HHHHHHHTTCCCCCC-----SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCCccCC-----CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 346777777766421 11122223333332 23322 677777776654 45566666777777778888888
Q ss_pred HHHHHHHHHhhcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-----CHhhHHHHHHHHH--h--CCChhHH
Q 012101 242 LQVHKYVFQVKSKQ-KSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--P-----NVSSWTSMIVGYA--A--NGLANEA 309 (471)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-----~~~~~~~li~~~~--~--~~~~~~a 309 (471)
.+++.+. +..+. .-+...+..++..|.+.|+.+.|.+.+++|.+ | +..+...++.++. . .+++.+|
T Consensus 120 L~~l~~~--i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A 197 (310)
T 3mv2_B 120 LETCVEG--IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSN 197 (310)
T ss_dssp HHHHHHH--HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHH
T ss_pred HHHHHHH--hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHH
Confidence 8888776 55543 23566677777888888888888888887764 4 1344455555522 2 2378888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC--------CCCChhHHHHHHHHHHhcCCHHHHH
Q 012101 310 LDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ--------IEPRFAHYGCMVDLLGRAGLLEEAR 381 (471)
Q Consensus 310 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A~ 381 (471)
..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.++ -+-+..+...+|......|+ +|.
T Consensus 198 ~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~ 273 (310)
T 3mv2_B 198 FYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE 273 (310)
T ss_dssp HHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH
T ss_pred HHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH
Confidence 8888887654 45533334444577778888888888876654310 02344555455555555665 777
Q ss_pred HHHHhC-CCCCCHH
Q 012101 382 AMVEGM-PMKANVV 394 (471)
Q Consensus 382 ~~~~~m-~~~p~~~ 394 (471)
++++++ ...|+..
T Consensus 274 ~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 274 DLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHTTCCCH
T ss_pred HHHHHHHHhCCCCh
Confidence 777777 4555543
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=1.9e-09 Score=107.95 Aligned_cols=161 Identities=12% Similarity=0.071 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSA 334 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 334 (471)
+...++.+..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356677788888888888888888877654 446778888888888888888888888887753 2246678888888
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEP-RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~ 411 (471)
+...|++++|.+.|++..+. .| +...|..+..+|...|++++|.+.|++. .+.| +...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88889999999998888765 34 4567888888999999999999999887 6666 45688889999999999999
Q ss_pred HHHHHHHHHhc
Q 012101 412 GEWVAKHLQEL 422 (471)
Q Consensus 412 a~~~~~~~~~~ 422 (471)
|.+.++++.++
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888888764
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=2.6e-09 Score=95.70 Aligned_cols=204 Identities=10% Similarity=-0.014 Sum_probs=148.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C--CHhhHHHHHHHHHhCCChh
Q 012101 237 DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-------P--NVSSWTSMIVGYAANGLAN 307 (471)
Q Consensus 237 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~ 307 (471)
++++|...|... ...|...|++++|...|.+..+ + ...+|+.+..+|...|+++
T Consensus 32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 94 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV 94 (292)
T ss_dssp HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 477777777655 3356778999888888876643 1 1457888999999999999
Q ss_pred HHHHHHHHHHHcCC---CCC--HHHHHHHHHHhccC-CcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCH
Q 012101 308 EALDCFHYMRESGI---RPN--HVTFVGVLSACVHG-GKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 308 ~a~~~~~~m~~~~~---~p~--~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~ 377 (471)
+|+..+++..+... .+. ..++..+...|... |++++|...|++..+...-..+ ..++..+...|.+.|++
T Consensus 95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 99999988765311 111 35778888889986 9999999999998764211111 34678889999999999
Q ss_pred HHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHH--cCC
Q 012101 378 EEARAMVEGM-PMKANV--------VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-----AYVVLSNIYA--SRG 441 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g 441 (471)
++|...|++. ...|+. ..|..+..++...|++++|...+++..++.|.... .+..++..|. ..+
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 9999999998 333321 25777888999999999999999999998876443 2344566665 567
Q ss_pred ChHHHHHHHHHhhcCC
Q 012101 442 LWEEVERIRAVMKHRN 457 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~~ 457 (471)
++++|++.|+.+...+
T Consensus 255 ~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLD 270 (292)
T ss_dssp THHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCccH
Confidence 8999999998776543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=4.4e-09 Score=81.60 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 012101 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGACEKF 406 (471)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~~~~~ 406 (471)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++ ... .+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 334444445555555555555554331 123344555555555556666666665555 222 2445566666667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
|++++|.+.++++.+..|.++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777766666666667777777777777777777766553
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.07 E-value=1.2e-08 Score=87.38 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHH
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--VTFVGV 331 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l 331 (471)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566677778888888888887764 32 245666777788888888888888887765322111 123333
Q ss_pred HHHhcc------------------CCcHHHHHHHHHHhHHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 012101 332 LSACVH------------------GGKVQEGKHFFEMMKNVYQIEPRFA-HYGCMVDLLGRAGLLEEARAMVEGMPMKAN 392 (471)
Q Consensus 332 l~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 392 (471)
..++.. .|+.++|...|+++.+. .|+.. .+...... +......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH-----------
Confidence 333332 35566666666666543 23221 11111100 0000000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD---GAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
......+...+.+.|++++|...|+++.+..|.++ ..+..++.+|.+.|++++|.+.++.+...++...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01113456778899999999999999999998765 4688899999999999999999999988776544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=7.2e-09 Score=91.10 Aligned_cols=183 Identities=13% Similarity=-0.011 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHHHHHH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----VSSWTSMIVGYAANGLANEALDCFHYMRESGI-RPN-HVTFVGVLS 333 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ll~ 333 (471)
+-.+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|...|++..+... .|. ...+..+..
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 33334444444444444444444432 11 23344444455555555555555555544311 111 222333333
Q ss_pred Hhcc--------CCcHHHHHHHHHHhHHhcCCCCChh---------------HHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 012101 334 ACVH--------GGKVQEGKHFFEMMKNVYQIEPRFA---------------HYGCMVDLLGRAGLLEEARAMVEGM-PM 389 (471)
Q Consensus 334 ~~~~--------~~~~~~a~~~~~~~~~~~~~~p~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m-~~ 389 (471)
++.. .|++++|...|+++.+.+.-.+... .+..+...|.+.|++++|...|+.+ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4444 5555555555555544321111111 1245677888899999999988887 33
Q ss_pred CCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHcCCChH
Q 012101 390 KAN----VVIWGCLMGACEKF----------GNVKMGEWVAKHLQELEPWSDG---AYVVLSNIYASRGLWE 444 (471)
Q Consensus 390 ~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~ 444 (471)
.|+ ...+..+..+|... |++++|...++++.+..|.++. ....+..++.+.++++
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 333 35677777788766 8889999999999998887763 3334444444444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.6e-08 Score=87.54 Aligned_cols=170 Identities=11% Similarity=-0.013 Sum_probs=136.6
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-hh
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-FA 362 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~ 362 (471)
.+...+..+...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...|+.+.+.++-.|. ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677778888999999999999999998863 33 567778888999999999999999999876432333 34
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 012101 363 HYGCMVDLLGR--------AGLLEEARAMVEGM-PMKANV-VIW-----------------GCLMGACEKFGNVKMGEWV 415 (471)
Q Consensus 363 ~~~~li~~~~~--------~g~~~~A~~~~~~m-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~ 415 (471)
.+..+..++.. .|++++|...|++. ...|+. ... ..+...|.+.|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 56677888888 99999999999998 333432 222 5567889999999999999
Q ss_pred HHHHHhcCCCCC---chHHHHHHHHHcC----------CChHHHHHHHHHhhcCCCc
Q 012101 416 AKHLQELEPWSD---GAYVVLSNIYASR----------GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 416 ~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 459 (471)
|+++.+..|.++ ..+..++.+|... |++++|.+.++++.+..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 999999988754 3677888888866 8999999999999876543
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=2.2e-08 Score=77.54 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLL 371 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 371 (471)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45666777777888888888888877653 3355667777777778888888888888876542 33456677778888
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 372 GRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888888888888877 3333 5667888888888889999999998888877664
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.2e-07 Score=80.22 Aligned_cols=162 Identities=8% Similarity=-0.086 Sum_probs=116.1
Q ss_pred CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC----cHHHHHHHHHHhHHhcCCCCChhH
Q 012101 288 PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG----KVQEGKHFFEMMKNVYQIEPRFAH 363 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~p~~~~ 363 (471)
.++..+..+...|...+++++|...|++..+.| +...+..+-..|.. + ++++|.+.|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 455566666666777777777777777777665 44555556666666 5 788888888887543 34556
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 364 YGCMVDLLGR----AGLLEEARAMVEGM-PMKAN---VVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 364 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
+..|...|.. .+++++|.++|++. ...|+ ...+..|...|.. .+++++|...|++..+. +.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 77888888888887 44443 6777778888877 77888888888888877 33556777
Q ss_pred HHHHHHHcC-C-----ChHHHHHHHHHhhcCCC
Q 012101 432 VLSNIYASR-G-----LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 432 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 458 (471)
.|..+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888754 3 78888888888877664
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=4.2e-09 Score=105.82 Aligned_cols=170 Identities=8% Similarity=-0.044 Sum_probs=98.8
Q ss_pred cCcCCHHHHHHHHHHHHHhh-------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHh
Q 012101 233 GSLGDLELALQVHKYVFQVK-------SKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAA 302 (471)
Q Consensus 233 ~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 302 (471)
...|++++|.+.+++. .. ...+.+...+..+..+|.+.|++++|...|++..+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~a--l~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAA--RHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHH--HTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHh--hhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 5566667777666666 31 11233445566666666666777777666666553 345566666666666
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 012101 303 NGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARA 382 (471)
Q Consensus 303 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 382 (471)
.|++++|...|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+.. +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777666666542 2234455566666666666666 66666665431 2234456666666666677777766
Q ss_pred HHHhC-CCCCCH-HHHHHHHHHHHhcCC
Q 012101 383 MVEGM-PMKANV-VIWGCLMGACEKFGN 408 (471)
Q Consensus 383 ~~~~m-~~~p~~-~~~~~l~~~~~~~~~ 408 (471)
.|++. ...|+. ..+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666 555543 355555555555443
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=2e-09 Score=85.78 Aligned_cols=139 Identities=9% Similarity=-0.059 Sum_probs=95.7
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHH
Q 012101 300 YAANGLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLE 378 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 378 (471)
+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|++..+.. +-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 33445666666666665432 232 2344456666777777777777777776542 234566777777777888888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEW-VAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+|...|++. .+.| +..+|..+...|.+.|+++++.+ +++++.++.|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888877777 5555 46678888888888888876554 4588888888888888888888877764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=3.8e-08 Score=87.77 Aligned_cols=172 Identities=6% Similarity=-0.074 Sum_probs=125.5
Q ss_pred HHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC
Q 012101 279 YKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE 358 (471)
Q Consensus 279 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (471)
...+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++.+... .
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~ 181 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---D 181 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---G
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---h
Confidence 333444333444556667777788888888888888887763 224566777778888888888888888888654 4
Q ss_pred CChhHHHHHH-HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHH
Q 012101 359 PRFAHYGCMV-DLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS--DGAYVVL 433 (471)
Q Consensus 359 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l 433 (471)
|+........ ..+...++.++|.+.+++. ...| +...+..+..++...|++++|...++++.+..|.+ ...+..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 5544332222 2355667777788877777 4445 56788888899999999999999999999988876 6688899
Q ss_pred HHHHHcCCChHHHHHHHHHhh
Q 012101 434 SNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+.+|...|+.++|...+++..
T Consensus 262 ~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999888887654
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=2.5e-08 Score=98.31 Aligned_cols=160 Identities=8% Similarity=-0.054 Sum_probs=122.0
Q ss_pred cCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 272 CGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 272 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 456788889999999999999999999998763 335678888889999999999999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF---GNVKMGEWVAKHLQELE 423 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 423 (471)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9997652 334678888999999999999999999998 4445 567888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 012101 424 PWSDGAYVVLS 434 (471)
Q Consensus 424 ~~~~~~~~~l~ 434 (471)
|.+...+..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776665
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.85 E-value=1.2e-07 Score=85.43 Aligned_cols=218 Identities=13% Similarity=0.040 Sum_probs=151.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC-cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS-LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLA 278 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (471)
.|++++|.+++++..+.. +.. +.+ .++++.|...|... ...|...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence 467888888888777542 111 122 46777777776654 3456778888888
Q ss_pred HHHHHhcCC-----CC----HhhHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhccCCcHHHH
Q 012101 279 YKVFWEIDQ-----PN----VSSWTSMIVGYAANGLANEALDCFHYMRESG---IRPN--HVTFVGVLSACVHGGKVQEG 344 (471)
Q Consensus 279 ~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a 344 (471)
...|.+..+ .+ ..+|+.+...|...|++++|...|++..+.- -.|. ..++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 887776543 11 3477888888999999999999998865431 1222 3567777888888 999999
Q ss_pred HHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHH
Q 012101 345 KHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM-PM---KAN----VVIWGCLMGACEKFGNVKMG 412 (471)
Q Consensus 345 ~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~l~~~~~~~~~~~~a 412 (471)
...|++..+...-..+ ..++..+...|.+.|++++|.+.|++. .+ .++ ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988654211111 356778889999999999999999987 21 111 23666777788888999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHcCCChHHHHH
Q 012101 413 EWVAKHLQELEPWSDGA-----YVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 413 ~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 448 (471)
...+++.. ..|..... ...++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 77654432 33455555 5677766655
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=2e-07 Score=93.61 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=142.9
Q ss_pred HcCCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 198 SQDGRAKEAIDMFIGLK--------KCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 198 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|.+.++++ ++.. +.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDL--AERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHH--hccC-cchHHHHHHHHHHH
Confidence 77899999999999987 33 2445677888888999999999999999998 5443 33577888899999
Q ss_pred HhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHH
Q 012101 270 GKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKH 346 (471)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 346 (471)
...|++++|...|++..+ .+...|..+..++.+.|++++ ...|++..+.. +-+...+..+..++.+.|++++|.+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998764 456788889999999999999 99999988763 3356778888889999999999999
Q ss_pred HHHHhHHhcCCCCC-hhHHHHHHHHHHhcCC--------HHHHHHHHHhC
Q 012101 347 FFEMMKNVYQIEPR-FAHYGCMVDLLGRAGL--------LEEARAMVEGM 387 (471)
Q Consensus 347 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m 387 (471)
.|+++.+ +.|+ ...+..+..++...++ +++|.+.+..+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 9999864 3565 4566677777766444 66677777766
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=1.2e-09 Score=87.01 Aligned_cols=126 Identities=9% Similarity=-0.086 Sum_probs=104.0
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGN 408 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~ 408 (471)
-..+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3456677899999999988753 2343 345567889999999999999999998 6666 67799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHH-HHHhhcCCCcc
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERI-RAVMKHRNLAK 460 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~~ 460 (471)
+++|+..|+++.+.+|.++..+..++.+|.+.|++++|.+. +++..+..+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999887765 58777765543
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=2.7e-08 Score=81.56 Aligned_cols=156 Identities=8% Similarity=-0.073 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccC
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHG 338 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 338 (471)
+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...+++..+. .|+...........
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~--- 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLE--- 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHH---
Confidence 33445555566666666666666554 33445555555555666666666665555433 22222111110000
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVA 416 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 416 (471)
+...+...+|.+.+++. ...| +...+..+..++...|++++|...+
T Consensus 84 --------------------------------~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 84 --------------------------------LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp --------------------------------HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00111111234444443 3334 3556666666777777777777777
Q ss_pred HHHHhcCCCC--CchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 417 KHLQELEPWS--DGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 417 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
+++.+..|.+ +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7777666543 3366667777777777777777666543
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=2.3e-07 Score=79.35 Aligned_cols=185 Identities=14% Similarity=-0.004 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHh----h
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVS----S 292 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 292 (471)
+...+..+...+.+.|++++|...|+.+ ++.... .....+..+..+|.+.|++++|...|+++.+ |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~--~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEAL--DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence 3455666777889999999999999999 554322 2245778889999999999999999999865 4322 4
Q ss_pred HHHHHHHHHh------------------CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 293 WTSMIVGYAA------------------NGLANEALDCFHYMRESGIRPNHV-TFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 293 ~~~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
+..+..++.. .|++++|...|+++.+. .|+.. ....... ...+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH-
Confidence 4445555544 57899999999999876 44432 2111110 011111111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++.+....|.+..
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234667888999999999999998 44443 256888899999999999999999999988876543
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.5e-06 Score=77.64 Aligned_cols=160 Identities=8% Similarity=-0.039 Sum_probs=117.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESG-IRPNHV----TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYG 365 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~ 365 (471)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 123321 2334566677788999999999998763222233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-----PM---KAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAY 430 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~ 430 (471)
.+...|...|++++|...++++ .. .+. ..++..+...|.+.|++++|...+++..+..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999999988877 11 122 2378889999999999999999999988754221 3478
Q ss_pred HHHHHHHHcCCC-hHHHHHHHHHhh
Q 012101 431 VVLSNIYASRGL-WEEVERIRAVMK 454 (471)
Q Consensus 431 ~~l~~~~~~~g~-~~~A~~~~~~m~ 454 (471)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 889999999994 699988887765
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.6e-07 Score=92.48 Aligned_cols=147 Identities=10% Similarity=-0.047 Sum_probs=106.8
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
.|++++|.+.+++. .+.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~a--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAA--VRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47888999999888 4432 33567888899999999999999999988765 456788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 012101 312 CFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA---GLLEEARAMVEGM 387 (471)
Q Consensus 312 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 387 (471)
.+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999988763 3356788888889999999999999999987652 23466788888889888 9999999999888
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=3.5e-08 Score=78.27 Aligned_cols=97 Identities=8% Similarity=-0.138 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|...|+++.++.|.++..|..++.+|.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 35666677777888888888888887 4455 566788888888888888888888888888888888888888888888
Q ss_pred CCChHHHHHHHHHhhcCCC
Q 012101 440 RGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 440 ~g~~~~A~~~~~~m~~~~~ 458 (471)
.|++++|.+.|++..+...
T Consensus 117 lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 8888888888888776543
No 109
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=1.9e-07 Score=79.04 Aligned_cols=130 Identities=13% Similarity=-0.097 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHH
Confidence 34556677788899999999998876 36678888888888999999999999999887652 3456678888889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-----------------NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
|...|++++|.+.|++. ...| ....+..+..++...|++++|...++++.+..|.+
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999998887 2222 22678888888999999999999999998888765
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=8.6e-06 Score=78.15 Aligned_cols=349 Identities=10% Similarity=-0.039 Sum_probs=210.2
Q ss_pred HHHHHHHHHhcccccCchHHHHHHhcccCC-CCchhhHHHHHHHHHhCCC-chHHHHHHHHHHHC-CCCC-CcchHHHHH
Q 012101 53 IVATQLSKCTNLLQLNQIYAHIIRTHMLHS-YSAAFHWNNIIRLYTRLEA-PKKALDIYIFMSRA-GVLP-DCYTLPIVL 128 (471)
Q Consensus 53 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll 128 (471)
+|..-+..+-. ++.+.+..+|++.-. .|++..|...+....+.++ .+....+|+..... |..| +...|...+
T Consensus 17 vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 66666666643 668888888887643 4788888888887777663 45567778777653 4322 445566666
Q ss_pred HHHh----ccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHH-------------hcCChhhHHHHhccCC----CCCc
Q 012101 129 KASC----QLFALEIGRQLHSLAVRLGLESNEFCESGFISLYS-------------KAGDFEKARKVFDENP----ERKL 187 (471)
Q Consensus 129 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~----~~~~ 187 (471)
..+. ..++.+.+..+|+..++.....-...|......-. ..+.+..|..+++... ..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 5543 23567888889998887321111112222111100 0112222333332221 1122
Q ss_pred chHHHHHHHHHcCC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChh
Q 012101 188 GSWNAIIAGLSQDG--R-----AKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTL 260 (471)
Q Consensus 188 ~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 260 (471)
..|...+.--...+ - .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..+++.. +.. +.+..
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erA--i~~--P~~~~ 247 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERG--IEM--SDGMF 247 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHH--CCSSH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--HhC--CCcHH
Confidence 34555444332221 1 34567788888875 3556777887888888889999999999999 665 33333
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHhcC----------C--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 012101 261 MLNSLIDMYGKCGRMDL-AYKVFWEID----------Q--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVT 327 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~-A~~~~~~~~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 327 (471)
.+.. |....+.++ ...+.+... . .....|...+....+.++.+.|..+|.+. .. ...+...
T Consensus 248 l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v 321 (493)
T 2uy1_A 248 LSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHV 321 (493)
T ss_dssp HHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHH
T ss_pred HHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHH
Confidence 3332 222211111 122222211 0 11245666677776778899999999988 32 1223344
Q ss_pred HHH--HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 012101 328 FVG--VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK 405 (471)
Q Consensus 328 ~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~ 405 (471)
|.. .+.... .++.+.|..+|+...+.++- +...+...++...+.|+.+.|..+|+++. .....|...+..-..
T Consensus 322 ~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 322 FIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 432 222222 34699999999999876432 34456667887888999999999999983 257788888888888
Q ss_pred cCCHHHHHHHHHHHHh
Q 012101 406 FGNVKMGEWVAKHLQE 421 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~ 421 (471)
.|+.+.+..++++..+
T Consensus 397 ~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 397 VGSMELFRELVDQKMD 412 (493)
T ss_dssp HSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8999999998888764
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.6e-07 Score=76.95 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=94.8
Q ss_pred HHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHH-H
Q 012101 224 TMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVG-Y 300 (471)
Q Consensus 224 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~ 300 (471)
.+......+.+.|++++|...++.. .+.. +.+...+..+..+|.+.|++++|...|++..+ |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTL--SDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTS--CHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH--HHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 4556677788999999999999988 4433 33577889999999999999999999999876 433332222111 1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC---hhHHHHHHHHHHhcCCH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR---FAHYGCMVDLLGRAGLL 377 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~ 377 (471)
...+...+|...+++..+.. +-+...+..+..++...|++++|...|+++.+. .|+ ...+..+...+...|+.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKV---NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CcccChHHHHHHHHHHHHHhCCC
Confidence 12222334555565555542 113445555555566666666666666665433 232 33455555555555555
Q ss_pred HHHHHHHH
Q 012101 378 EEARAMVE 385 (471)
Q Consensus 378 ~~A~~~~~ 385 (471)
++|...|+
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 55555544
No 112
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=1.7e-07 Score=79.08 Aligned_cols=128 Identities=7% Similarity=-0.074 Sum_probs=91.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
.+..++.+.|++++|...|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 37778888899999999998888763 3356777888888888999999999999887652 23456777777777655
Q ss_pred CC--HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 375 GL--LEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 375 g~--~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
|. .+.+...++.. ...|....+.....++...|++++|...|+++.++.|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 54 34456666665 32333334455566677788999999999999988885
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.75 E-value=2.2e-07 Score=78.69 Aligned_cols=173 Identities=12% Similarity=-0.025 Sum_probs=126.0
Q ss_pred HHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC----CchHHHHHHHHH
Q 012101 72 AHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF----ALEIGRQLHSLA 147 (471)
Q Consensus 72 ~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~ 147 (471)
+|++.|++.-...+..++..+-..|...+++++|+..|++..+.| +...+..+-..+.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 345555555444677788888888888899999999999888765 55667777777776 6 788899999888
Q ss_pred HHhCCCCCcchHHHHHHHHHh----cCChhhHHHHhccCCCCCc-----chHHHHHHHHHc----CCChhHHHHHHHHHH
Q 012101 148 VRLGLESNEFCESGFISLYSK----AGDFEKARKVFDENPERKL-----GSWNAIIAGLSQ----DGRAKEAIDMFIGLK 214 (471)
Q Consensus 148 ~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~ 214 (471)
.+.| +...+..|...|.. .+++++|.++|++..+.+. .++..|...|.. .+++++|+..|++..
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7755 55666777777776 7888888888888766543 577888888877 778888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHcC------cCCHHHHHHHHHHHHHhhcCC
Q 012101 215 KCGFEPDDVTMVSVTSACGS------LGDLELALQVHKYVFQVKSKQ 255 (471)
Q Consensus 215 ~~g~~p~~~~~~~li~~~~~------~~~~~~a~~~~~~~~~~~~~~ 255 (471)
+. ..+...+..+...|.. ..++++|...|+.. .+.|.
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A--~~~g~ 199 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS--CLEGF 199 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH--HHHTC
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH--HHcCC
Confidence 76 2333455555555542 23788888888887 55553
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.75 E-value=4.2e-07 Score=80.94 Aligned_cols=164 Identities=7% Similarity=-0.068 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHH
Q 012101 219 EPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSM 296 (471)
Q Consensus 219 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 296 (471)
+.+...+..+...+...|++++|...+++. .... +.+...+..+..+|.+.|++++|...++++.. |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a--l~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDA--WQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHH--HHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 344455666677777888888888888887 4433 23566777788888888888888888888765 544322222
Q ss_pred -HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC
Q 012101 297 -IVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG 375 (471)
Q Consensus 297 -i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 375 (471)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...+.++.+...-..+...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 223556667777777777777653 334566667777777788888888888877665211112456667777777777
Q ss_pred CHHHHHHHHHh
Q 012101 376 LLEEARAMVEG 386 (471)
Q Consensus 376 ~~~~A~~~~~~ 386 (471)
+.++|...+++
T Consensus 270 ~~~~a~~~~r~ 280 (287)
T 3qou_A 270 TGDALASXYRR 280 (287)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 77666665543
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=4.5e-07 Score=81.04 Aligned_cols=163 Identities=8% Similarity=-0.063 Sum_probs=110.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC--CCC--hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPN-H----VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI--EPR--FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p~--~~ 362 (471)
.+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+++..+...- .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677778888888888877766432211 1 12333445567778888888888887643111 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----C
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM----PMKAN-----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--S----D 427 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~ 427 (471)
+++.+...|...|++++|...+++. ...|+ ..++..+..+|...|++++|...+++..+..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888888888888888888776 11122 257888888999999999999999888765321 1 2
Q ss_pred chHHHHHHHHHcCCChHHH-HHHHHHhh
Q 012101 428 GAYVVLSNIYASRGLWEEV-ERIRAVMK 454 (471)
Q Consensus 428 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 454 (471)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4677888899999999999 66666653
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=4e-06 Score=80.50 Aligned_cols=337 Identities=7% Similarity=-0.104 Sum_probs=203.9
Q ss_pred CCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCC-chHHHHHHHHHHHh-CCC-CCcchHHHHHHHHH----hcCCh
Q 012101 100 EAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFA-LEIGRQLHSLAVRL-GLE-SNEFCESGFISLYS----KAGDF 172 (471)
Q Consensus 100 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~----~~g~~ 172 (471)
|+++.+..+|++.... .|+...|..-+....+.++ .+....+|+..+.. |.. .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999874 5798999988887777663 46678888887764 533 35567777776654 34678
Q ss_pred hhHHHHhccCCC-C--Ccc-hHHHHHHHHH-------------cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCc
Q 012101 173 EKARKVFDENPE-R--KLG-SWNAIIAGLS-------------QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSL 235 (471)
Q Consensus 173 ~~a~~~~~~~~~-~--~~~-~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 235 (471)
+.+.++|++... | +.. .|......-. ..+.+..|..+++.+...--..+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999987643 2 111 2222211100 0112333444444443210001233454444432221
Q ss_pred --C--C---HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHh-hHHHHHHHHHhCCCh
Q 012101 236 --G--D---LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVS-SWTSMIVGYAANGLA 306 (471)
Q Consensus 236 --~--~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~li~~~~~~~~~ 306 (471)
+ + .+.+..+|+++ +... +.+..+|-..+..+.+.|+.++|..+|++... |+.. .|. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~a--l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYI--LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHH--HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHH--HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcch
Confidence 1 1 34567788888 5543 44577888888888899999999999986543 3322 222 23322222
Q ss_pred hHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc
Q 012101 307 NEALDCFHYMRESG---------IRP---NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA 374 (471)
Q Consensus 307 ~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 374 (471)
++. ++.+.+.- ..+ ....|...+....+.++.+.|..+|+.. ...+ .+...|......-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHH
Confidence 222 33332211 011 1234555666666678899999999998 4312 2444454333332233
Q ss_pred C-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 375 G-LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 375 g-~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+ +++.|.++|+.. ..-| +...|...+....+.|+.+.|..+|+++. .....|...+..-...|+.+.+.++++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 699999999987 2123 34456667777788999999999999972 234567777777778899999999888
Q ss_pred Hhhc
Q 012101 452 VMKH 455 (471)
Q Consensus 452 ~m~~ 455 (471)
++.+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=7.3e-07 Score=75.31 Aligned_cols=131 Identities=10% Similarity=-0.048 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV 341 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 341 (471)
+..+...+...|++++|...|++..+++...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567778889999999999999988888899999999999999999999999988763 34567788888889999999
Q ss_pred HHHHHHHHHhHHhcCCCC--------------ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 012101 342 QEGKHFFEMMKNVYQIEP--------------RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANV 393 (471)
Q Consensus 342 ~~a~~~~~~~~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 393 (471)
++|.+.|+...+...-.+ ....+..+..+|.+.|++++|.+.|+.. ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999876422111 1257788889999999999999999998 666754
No 118
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=3e-07 Score=77.54 Aligned_cols=132 Identities=14% Similarity=-0.020 Sum_probs=67.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 264 SLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
.+..+|.+.|++++|...|++..+ .+...|..+...+...|++++|...|++..+.. +-+...+..+...|...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 355566666666666666665543 344556666666666666666666666666542 2234455555555443332
Q ss_pred --HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 012101 341 --VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCL 399 (471)
Q Consensus 341 --~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 399 (471)
.+.+...++... ...|....+.....++...|++++|...|++. ...|+......+
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 233344444432 11222222333344555566667777766665 566665544433
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.3e-07 Score=72.60 Aligned_cols=105 Identities=6% Similarity=-0.051 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+......|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444445555555555555555554331 123344445555555555555555555554 3233 3344555555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
..|++++|.+.|++..++.|.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 55555555555555555555444444333
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.66 E-value=3.2e-07 Score=82.67 Aligned_cols=196 Identities=10% Similarity=-0.017 Sum_probs=146.5
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHH
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGK-CGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDC 312 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (471)
..|++++|.+++++. .+.... . +.+ .+++++|...|.+. ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a--~k~~~~-~----------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKA--EKYLKT-S----------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHH--HHHHCC-C----------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHH--HHHccc-c----------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHH
Confidence 457888999999887 432211 1 112 57888888876653 5678889999999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCC--CC--hhHHHHHHHHHHhcCCHHHHHHH
Q 012101 313 FHYMRES----GIRP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIE--PR--FAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 313 ~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~--~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
|.+..+. +-.+ -..+|..+...|...|++++|...|++..+.+.-. +. ..++..+...|.. |++++|.+.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 9987653 2111 13478888888999999999999999876542111 11 3567788888988 999999999
Q ss_pred HHhC-CCC-----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHcCCChHHHHHH
Q 012101 384 VEGM-PMK-----A--NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD------GAYVVLSNIYASRGLWEEVERI 449 (471)
Q Consensus 384 ~~~m-~~~-----p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~ 449 (471)
+++. .+. + ...++..+...+.+.|++++|...+++..+..+.+. ..+..++.++...|++++|.+.
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987 111 1 145788899999999999999999999988754332 2566677888899999999999
Q ss_pred HHHhh
Q 012101 450 RAVMK 454 (471)
Q Consensus 450 ~~~m~ 454 (471)
+++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99988
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.66 E-value=4.6e-07 Score=73.00 Aligned_cols=126 Identities=8% Similarity=0.013 Sum_probs=90.2
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34555556666777777777777766542 234566677777777788888888777776 3333 5667888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHH--HHHHHcCCChHHHHHHHHHhh
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVL--SNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 454 (471)
..|++++|...++++.+..|.+...+..+ +..+.+.|++++|.+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88999999999988888888776666443 444777888888888877664
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=4.2e-06 Score=74.43 Aligned_cols=220 Identities=8% Similarity=-0.016 Sum_probs=113.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC--CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH----Hhc-
Q 012101 200 DGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG--DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY----GKC- 272 (471)
Q Consensus 200 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 272 (471)
....++|+.+++.+.... +-+...|+.--.++...+ +++++.+.++.+ +.... .+..+|+--...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~--L~~nP-k~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEI--ALDNE-KNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHH--HHHCT-TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHH--HHHCc-ccHHHHHHHHHHHHHHHHhcc
Confidence 334467888888777652 333445565555566666 777888877777 44432 2333444333333 333
Q ss_pred --CChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc-----
Q 012101 273 --GRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN--EALDCFHYMRESGIRPNHVTFVGVLSACVHGGK----- 340 (471)
Q Consensus 273 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----- 340 (471)
++++++..+++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 566666666666553 44455555555555566665 66666666665532 244444444333444443
Q ss_pred -HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHH
Q 012101 341 -VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE-ARAMVEGM-PM----KANVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 341 -~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
++++.+.++.+.... +-|...|+.+-..+.+.|+... +..+.++. .. ..+...+..+..++.+.|+.++|.
T Consensus 201 ~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 555555555554431 2333444444444444444222 33344443 11 124445555555555555555555
Q ss_pred HHHHHHHh-cCCCC
Q 012101 414 WVAKHLQE-LEPWS 426 (471)
Q Consensus 414 ~~~~~~~~-~~~~~ 426 (471)
++++.+.+ .+|..
T Consensus 279 ~~~~~l~~~~Dpir 292 (306)
T 3dra_A 279 TVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHTTCGGG
T ss_pred HHHHHHHhccChHH
Confidence 55555543 34433
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=7.5e-08 Score=78.90 Aligned_cols=123 Identities=8% Similarity=0.033 Sum_probs=65.4
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH-HHhcCCH--H
Q 012101 302 ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL-LGRAGLL--E 378 (471)
Q Consensus 302 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 378 (471)
..|++++|...+++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4455666666666655542 2344555555566666666666666666655432 1234445555555 5555665 6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 379 EARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 379 ~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+|...+++. ...| +...+..+...+...|++++|...++++.+..|.++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 666666655 3333 344555555666666666666666666666655543
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.64 E-value=4e-07 Score=69.80 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=86.7
Q ss_pred CCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 012101 357 IEPRF-AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVL 433 (471)
Q Consensus 357 ~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 433 (471)
+.|+. ..+......|.+.|++++|.+.|++. ...| +..+|..+..++.+.|++++|+..+++..+++|.+...|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34443 45667788899999999999999987 4455 677888888999999999999999999999999888889999
Q ss_pred HHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 434 SNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
+.+|...|++++|.+.|++..+..+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 999999999999999999988765543
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.4e-06 Score=77.79 Aligned_cols=162 Identities=10% Similarity=-0.049 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCH------hhHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNV------SSWTSMIVGYAANGLANEALDCFHYMRESGI---RPN--HV 326 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 326 (471)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566677788888888888765432 111 2233455566778899999999988775321 122 34
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhC-C------CCC-CH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-----FAHYGCMVDLLGRAGLLEEARAMVEGM-P------MKA-NV 393 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~------~~p-~~ 393 (471)
+++.+...|...|++++|...+++..+.....|+ ..++..+...|...|++++|.+.+++. . ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888889999999999999888632111222 247788888999999999999998876 1 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 012101 394 VIWGCLMGACEKFGNVKMG-EWVAKHLQEL 422 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 422 (471)
.+|..+..+|.+.|++++| ...+++....
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 7778877653
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.62 E-value=7.9e-06 Score=72.88 Aligned_cols=158 Identities=12% Similarity=-0.036 Sum_probs=117.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----CCH----hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----PNV----SSWTSMIVGYAANGLANEALDCFHYMRESGIR-PN----HVTFVG 330 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 330 (471)
.+..+...|++++|..++++..+ ++. ..+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999887654 121 12334666667778999999999998874322 22 236888
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhc----CCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVY----QIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWG 397 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 397 (471)
+...|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 11122 236778889999999999999998876 22233 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhc
Q 012101 398 CLMGACEKFGN-VKMGEWVAKHLQEL 422 (471)
Q Consensus 398 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 422 (471)
.+..++.+.|+ +++|...++++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999988764
No 127
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=4.7e-05 Score=67.65 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCHhhHHHHHHHH----HhC---CC
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWEIDQ---PNVSSWTSMIVGY----AAN---GL 305 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---~~ 305 (471)
.++|.++++.+ +.... -+..+|+.--.++...| +++++.++++.+.. .+..+|+.--..+ ... ++
T Consensus 49 s~~aL~~t~~~--L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELG--INELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHH--HHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHH--HHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777 44432 24556777777777777 88999888888765 3445666544444 444 77
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHH--HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC------H
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQ--EGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL------L 377 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~ 377 (471)
+++++.+++++.+.. +-+...|..-...+.+.|.++ ++.+.++++.+.. .-|...|+.-...+...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhH
Confidence 888899998888764 335666666555566667776 8888888887652 3455566655555556665 7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 378 EEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV-KMGEWVAKHLQELE---PWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 378 ~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
+++++.++.+ ...| |...|+.+...+.+.|+. +.+..+.+++.+.+ +.++..+..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8888888877 4444 677888888888777774 44566777766655 5566677888888888899999999998
Q ss_pred Hhhc
Q 012101 452 VMKH 455 (471)
Q Consensus 452 ~m~~ 455 (471)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.61 E-value=7.2e-07 Score=67.73 Aligned_cols=113 Identities=16% Similarity=0.124 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK-ANVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++ ... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3455556666666777777777777665441 234556666677777777777777777766 222 355677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
+...|++++|...++++.+..|.++..+..+..++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888888888888888888777766666666666554
No 129
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.60 E-value=1.5e-07 Score=74.49 Aligned_cols=90 Identities=9% Similarity=0.016 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.+...+.+.|++++|...|+.. ...| +...|..+..+|...|++++|...++++.+..|.++..+..++.+|...|++
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3334444444444444444444 2222 3334444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHhhc
Q 012101 444 EEVERIRAVMKH 455 (471)
Q Consensus 444 ~~A~~~~~~m~~ 455 (471)
++|.+.|++..+
T Consensus 106 ~~A~~~~~~al~ 117 (148)
T 2vgx_A 106 AEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=1.8e-07 Score=73.54 Aligned_cols=91 Identities=8% Similarity=-0.084 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.+...+.+.|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..|.++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444455555555555555554 2223 3445555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhhcC
Q 012101 444 EEVERIRAVMKHR 456 (471)
Q Consensus 444 ~~A~~~~~~m~~~ 456 (471)
++|.+.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555443
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=3.9e-07 Score=83.14 Aligned_cols=143 Identities=12% Similarity=-0.044 Sum_probs=97.2
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...|..+...+.+.|++++|...|++..+.. |+...+ ..+.+.++- . .....|..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-A--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-H--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-H--------HHHHHHHHHHH
Confidence 3456666666667777777777777666542 221100 001111000 0 01356777778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHH-
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEV- 446 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 446 (471)
+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++.++.|.+...+..+..++.+.|++++|
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887 4444 5678888888899999999999999999999888888888888888888888888
Q ss_pred HHHHHHhh
Q 012101 447 ERIRAVMK 454 (471)
Q Consensus 447 ~~~~~~m~ 454 (471)
.+.++.|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555553
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=9.3e-07 Score=68.09 Aligned_cols=115 Identities=9% Similarity=-0.020 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3445555555556666666666666654321 123445555666666666666666666665 2223 45566777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+...|++++|.+.+++..+..|.+...+..+..++.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777777777766666767766666544
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.55 E-value=9e-07 Score=67.81 Aligned_cols=117 Identities=10% Similarity=-0.040 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|.+.++.. ...| +...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445555566666777777777777765542 234556666777777777777777777776 3333 45677777788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
+...|++++|...+++..+..|.++..+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888887777777777777776654
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=5.9e-07 Score=66.78 Aligned_cols=99 Identities=13% Similarity=-0.027 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--SDGAYVVLSNI 436 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 436 (471)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 345556667777777777777777776 3333 5667777888888888888888888888888887 77778888888
Q ss_pred HHcC-CChHHHHHHHHHhhcCCCc
Q 012101 437 YASR-GLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 437 ~~~~-g~~~~A~~~~~~m~~~~~~ 459 (471)
|.+. |++++|.+.+++.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 8888 8888888888888776554
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=2.6e-07 Score=82.02 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-CChHHHHHHHHHhhcC
Q 012101 406 FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR-GLWEEVERIRAVMKHR 456 (471)
Q Consensus 406 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 456 (471)
.|+.++|.+.+++..+..|.+......+...+.+. +.+++|.++|+.+.+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45666666666666666554443444444444444 5566666666666543
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.4e-07 Score=70.63 Aligned_cols=102 Identities=7% Similarity=-0.074 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...++++.+..|.+...+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44567888889999999999999999998 5555 677899999999999999999999999999999888899999999
Q ss_pred HHcCCChHHHHHHHHHhhcCCCcc
Q 012101 437 YASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
|.+.|++++|.+.+++..+.....
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCc
Confidence 999999999999999988765543
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.50 E-value=1.3e-06 Score=72.91 Aligned_cols=152 Identities=14% Similarity=0.048 Sum_probs=77.4
Q ss_pred hcCChHHHHH---HHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhccCCcHH
Q 012101 271 KCGRMDLAYK---VFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRES----GIRP-NHVTFVGVLSACVHGGKVQ 342 (471)
Q Consensus 271 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 342 (471)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 333222223345555555566666666666666555431 1111 2234555555666666666
Q ss_pred HHHHHHHHhHHhcCCCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHhC------CCCCC--HHHHHHHHHHHHhcCCH
Q 012101 343 EGKHFFEMMKNVYQIEP-R----FAHYGCMVDLLGRAGLLEEARAMVEGM------PMKAN--VVIWGCLMGACEKFGNV 409 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~p~--~~~~~~l~~~~~~~~~~ 409 (471)
+|...+++..+...-.+ + ...+..+...+...|++++|...+++. ...+. ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666666544311111 1 223455556666666666666666554 01111 12345566666677777
Q ss_pred HHHHHHHHHHHhc
Q 012101 410 KMGEWVAKHLQEL 422 (471)
Q Consensus 410 ~~a~~~~~~~~~~ 422 (471)
++|...+++..+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666553
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.49 E-value=4e-07 Score=69.22 Aligned_cols=96 Identities=10% Similarity=-0.080 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++.+..|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455667788899999999999988 5555 6778888889999999999999999999999998888999999999999
Q ss_pred CChHHHHHHHHHhhcCCC
Q 012101 441 GLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 441 g~~~~A~~~~~~m~~~~~ 458 (471)
|++++|++.+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999887654
No 139
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=4.8e-07 Score=67.97 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCC
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRG 441 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 441 (471)
+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..++.+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333444444444444444444444 2222 33344444444444555555555555554444444444444444555555
Q ss_pred ChHHHHHHHHHhhcC
Q 012101 442 LWEEVERIRAVMKHR 456 (471)
Q Consensus 442 ~~~~A~~~~~~m~~~ 456 (471)
++++|.+.+++..+.
T Consensus 87 ~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 87 RFEEAKRTYEEGLKH 101 (118)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHc
Confidence 555555555444443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.1e-06 Score=67.35 Aligned_cols=94 Identities=9% Similarity=-0.095 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
.+..+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|...++++.+..|.++..|..++.+|...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444445555555555555555555 2223 3455555555666666666666666666666655555566666666666
Q ss_pred CChHHHHHHHHHhhcC
Q 012101 441 GLWEEVERIRAVMKHR 456 (471)
Q Consensus 441 g~~~~A~~~~~~m~~~ 456 (471)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 6666666666555443
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=4.5e-07 Score=71.47 Aligned_cols=110 Identities=12% Similarity=-0.017 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWG 397 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 397 (471)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666667777777777777777653 2454 455666666677777777777777665 3333 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+..++...|++++|...+++..+..|.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 666677777777777777777777766655555444444
No 142
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=2.8e-06 Score=67.17 Aligned_cols=104 Identities=5% Similarity=-0.084 Sum_probs=85.6
Q ss_pred CCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 012101 322 RPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGC 398 (471)
Q Consensus 322 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 398 (471)
.|+ ...+..+...+.+.|++++|...|+.+.... +.+...|..+..+|...|++++|.+.|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 444 3456677778889999999999999998652 335678888999999999999999999998 5555 4678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+..+|...|++++|...|+++.++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999988643
No 143
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=1.7e-06 Score=65.55 Aligned_cols=99 Identities=18% Similarity=0.151 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...+..+...+...|++++|.+.++++ ...| +..++..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 467788889999999999999999998 3334 67789999999999999999999999999999988888999999999
Q ss_pred cCCChHHHHHHHHHhhcCCCc
Q 012101 439 SRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..|++++|.+.++++.+....
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999876543
No 144
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=7.6e-07 Score=74.46 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=54.4
Q ss_pred hcCChhhHHH---HhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHcCcCCHH
Q 012101 168 KAGDFEKARK---VFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKC----GFEP-DDVTMVSVTSACGSLGDLE 239 (471)
Q Consensus 168 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~ 239 (471)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++.... |..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 433322222335555666666666666666666555431 1111 2234445555555666666
Q ss_pred HHHHHHHHHHHhhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 240 LALQVHKYVFQVKSKQK----SDTLMLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 240 ~a~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
+|...+++..+...... .....+..+...+...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666655522211111 01223444455555555555555554443
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=8.5e-07 Score=71.54 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMG 401 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 401 (471)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677788888999999999999999997652 336678888999999999999999999998 5555 5778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
++...|++++|...|++..++.|.+...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999998877554433
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.44 E-value=2.4e-06 Score=66.27 Aligned_cols=99 Identities=10% Similarity=-0.107 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 012101 324 NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMG 401 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~ 401 (471)
+...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34445555555555555555555555554431 122344455555555555555555555554 2222 3345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
++...|++++|...++++.+..|
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHCh
Confidence 55555555555555555555443
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.42 E-value=1.4e-06 Score=75.81 Aligned_cols=185 Identities=11% Similarity=-0.088 Sum_probs=94.7
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHH-------HHHHHhcCChHHHHHHHHhcCC--CC---------------
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSL-------IDMYGKCGRMDLAYKVFWEIDQ--PN--------------- 289 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~~--------------- 289 (471)
..++.+.|.+.|.++ ..... .....|..+ ...+.+.++..++...+..-.. |+
T Consensus 18 ~~~d~~~A~~~F~~a--~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEI--TNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHH--HHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHH--HHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 567777788877777 43332 234455544 3444444444444444443332 10
Q ss_pred -------HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC--
Q 012101 290 -------VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR-- 360 (471)
Q Consensus 290 -------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-- 360 (471)
...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccH
Confidence 011223445555666666666666665543 233323333334555666666666666544221 0 110
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM--PMK-AN--VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
...+..+..++...|++++|+..|++. +-. |. .........++.+.|+.++|...|+++....|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 124445555666666666666666665 211 32 224445555666666666666666666666664
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=8.2e-06 Score=65.46 Aligned_cols=128 Identities=9% Similarity=-0.106 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 345666677777888888888888777653 3356677777777888888888888888876642 3345677778888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-NVVIW--GCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
+...|++++|.+.+++. ...| +...+ ......+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887 3333 33444 3333447778888888888877654
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.40 E-value=1.1e-06 Score=67.31 Aligned_cols=93 Identities=6% Similarity=-0.074 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG-------AYVVL 433 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~l 433 (471)
.+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|.+.|++++|+..+++..++.|.+.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455666666777777777777666 4444 4556667777777777777777777777766654432 45556
Q ss_pred HHHHHcCCChHHHHHHHHHhhc
Q 012101 434 SNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 434 ~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+.+|...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6667777777777777776654
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.39 E-value=1.3e-06 Score=69.13 Aligned_cols=103 Identities=10% Similarity=-0.097 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA 402 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~ 402 (471)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|.+.|++. .+.| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3455566667778888888888888886542 235667777888888888888888888887 4444 55678888889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 403 CEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 403 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
+...|++++|...|++..+..|.++..
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 999999999999999999888876654
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.38 E-value=5.3e-06 Score=67.66 Aligned_cols=124 Identities=5% Similarity=-0.020 Sum_probs=85.9
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGA-CEKFGNV-- 409 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~-~~~~~~~-- 409 (471)
+...|++++|...++...+.. +.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777777777776542 234567777777788888888888888777 3333 55566667777 6677777
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 410 KMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 410 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888888888777777777778888888888888888888877765543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=8.8e-06 Score=60.79 Aligned_cols=109 Identities=9% Similarity=-0.026 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGAC 403 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~ 403 (471)
..+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555556666677777777777665441 224556666666777777777777777766 3333 456777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
...|++++|...+++..+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888777666555555443
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=1.1e-05 Score=63.20 Aligned_cols=99 Identities=13% Similarity=-0.066 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLS 434 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 434 (471)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|...+++..+..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3445555666666666666666666665 44554 455566666666666666666666666666665555666666
Q ss_pred HHHHcCCChHHHHHHHHHhhcCCC
Q 012101 435 NIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 435 ~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
.+|...|++++|.+.+++..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 666666666666666666655443
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=3.8e-06 Score=70.06 Aligned_cols=96 Identities=10% Similarity=-0.100 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS 439 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 439 (471)
..+..+..+|.+.|++++|...++.. ...| +...+..+..++...|++++|...|++..+..|.++..+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677778888888888888888887 4344 567888888999999999999999999999999888888888888888
Q ss_pred CCChHHHH-HHHHHhhcCC
Q 012101 440 RGLWEEVE-RIRAVMKHRN 457 (471)
Q Consensus 440 ~g~~~~A~-~~~~~m~~~~ 457 (471)
.++.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88777777 5566665443
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.33 E-value=0.00052 Score=61.74 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 012101 191 NAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG-DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMY 269 (471)
Q Consensus 191 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 269 (471)
+.+-....+.+..++|+++++++.... +-+...|+.--.++...+ .++++.++++.+ +... +.+..+|+--..++
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~--L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEF--AVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH--HHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHH--HHhC-CCcHHHHHHHHHHH
Confidence 333333445566678999999888763 334455665555555566 588899999888 5444 34566677666666
Q ss_pred Hhc-C-ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 270 GKC-G-RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN--------EALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 270 ~~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
.+. + +++++..+++++.+ .|..+|+...-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 665 6 78888888888876 44556665555555545555 7888888887764 335666666666666
Q ss_pred cCCc-------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 337 HGGK-------VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 337 ~~~~-------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
+.+. ++++.+.+++..... +-|...|+.+-..+.+.|+
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 6554 566777776665541 2344456555555555544
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.6e-06 Score=63.68 Aligned_cols=108 Identities=7% Similarity=-0.148 Sum_probs=70.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44455555666677777777777665541 234556666777777777777777777776 4344 4567777777888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 012101 405 KFGNVKMGEWVAKHLQELE------PWSDGAYVVLSNI 436 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 436 (471)
..|++++|...+++..+.. |.++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888887777 5554444444433
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.33 E-value=4.7e-06 Score=63.65 Aligned_cols=100 Identities=13% Similarity=-0.007 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY 437 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 437 (471)
+...+..+...+...|++++|.+.+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456778888999999999999999998 3344 6778999999999999999999999999999998888999999999
Q ss_pred HcCCChHHHHHHHHHhhcCCCc
Q 012101 438 ASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 438 ~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|.+.+++..+....
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc
Confidence 9999999999999998876543
No 158
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.32 E-value=3.2e-06 Score=66.21 Aligned_cols=103 Identities=11% Similarity=-0.041 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
.+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34445556677788888888888776542 234566777777888888888888888877 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
..|++++|...|+++.+..|.++....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 888888888888888888876665443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.32 E-value=7.3e-06 Score=65.92 Aligned_cols=96 Identities=11% Similarity=-0.040 Sum_probs=69.5
Q ss_pred CHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHH
Q 012101 289 NVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMV 368 (471)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li 368 (471)
+...|..+...+...|++++|+..|++..+.. +-+...+..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34566677777778888888888888877653 2356667777777788888888888888776542 23356677777
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 012101 369 DLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 369 ~~~~~~g~~~~A~~~~~~m 387 (471)
.+|...|++++|.+.|++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHH
Confidence 7888888888888887776
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.31 E-value=1.8e-05 Score=68.76 Aligned_cols=126 Identities=11% Similarity=-0.076 Sum_probs=60.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhccCCc
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ--PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPN--HVTFVGVLSACVHGGK 340 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~ 340 (471)
+...+...|++++|.++|..+.. |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++...|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 44445555666666666655543 322233344445555566666666555332211 110 1234444455555566
Q ss_pred HHHHHHHHHHhHHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 341 VQEGKHFFEMMKNVYQIEPR--FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
+++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+
T Consensus 187 ~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 187 FTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666655321 11132 123334444555556666666666555 33444
No 161
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=5.3e-06 Score=73.48 Aligned_cols=189 Identities=8% Similarity=-0.057 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHH
Q 012101 221 DDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMI 297 (471)
Q Consensus 221 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 297 (471)
+...+..+...+.+.|++++|...|+.. +... +.+...+..+..+|.+.|++++|...+++..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a--l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRA--ITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH--HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445556666667777777777777776 4332 22566677777777777777777777777665 3456677777
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCC
Q 012101 298 VGYAANGLANEALDCFHYMRESGIRPNH-VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGL 376 (471)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 376 (471)
.++...|++++|...|++..+.. |+. ..+...+.... ....+.. +...... ....+......+... ..|+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~ 150 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAE 150 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHH
Confidence 88888888888888888776542 211 01111111111 1111111 1222121 334444444433332 3688
Q ss_pred HHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHh
Q 012101 377 LEEARAMVEGM-PMKANVVIW-GCLMGACEKF-GNVKMGEWVAKHLQE 421 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~ 421 (471)
.++|.+.++.. ...|+.... ..+...+.+. +.++++.++|.++.+
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888877 667765433 3333334444 668889999988765
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.29 E-value=3.1e-06 Score=64.83 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRF----AHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----VVIWGCLMG 401 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~l~~ 401 (471)
+...+...|++++|...|+.+.+.. |+. ..+..+..++.+.|++++|...|++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566677777777777766542 222 25555666666777777777776666 32332 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 402 ACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 402 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
++...|++++|...++++.+..|.++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 66677777777777777766666544
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.1e-05 Score=76.29 Aligned_cols=163 Identities=7% Similarity=-0.117 Sum_probs=108.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhccCCcHHHHHHHHHHhHHhc---CCCCC-hhH
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESG-IRPNH----VTFVGVLSACVHGGKVQEGKHFFEMMKNVY---QIEPR-FAH 363 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~-~~~ 363 (471)
+..+...|...|++++|.+++.++.+.- ..++. .+.+.+-..+...|+.+.|.++++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556777777777777777777665421 11121 122223334456678888888877764321 22222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCC----c
Q 012101 364 YGCMVDLLGRAGLLEEARAMVEGM-------PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQELE---PWSD----G 428 (471)
Q Consensus 364 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~ 428 (471)
+..+...|...|++++|..++++. ..++. ..++..++..|...|++++|..++++..... +.++ .
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888899999999999888876 22232 3478888899999999999999998887643 2221 2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677778888999999887766643
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=0.00024 Score=66.93 Aligned_cols=164 Identities=8% Similarity=-0.079 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhc--CCCC-ChhH
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCG-FEPDD----VTMVSVTSACGSLGDLELALQVHKYVFQVKS--KQKS-DTLM 261 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~-~~~~ 261 (471)
+..+...|...|++++|.+.+......- ..++. ...+.+-..+...|+.+.+..+++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666777777777777666654321 01111 1222233334556777777777776632211 1111 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC--------C-CHhhHHHHHHHHHhCCChhHHHHHHHHHHHc--CC-CC-C--HH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQ--------P-NVSSWTSMIVGYAANGLANEALDCFHYMRES--GI-RP-N--HV 326 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p-~--~~ 326 (471)
+..+...|...|++++|..+++++.. + ...++..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877776532 1 1346777778888888888888888776532 11 11 1 23
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
.+..+...+...+++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556667778888888777766644
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.26 E-value=8.3e-06 Score=77.71 Aligned_cols=143 Identities=13% Similarity=-0.042 Sum_probs=92.3
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...|..+...+.+.|++++|...|++..+.. |+...+ . -+... +.. ......|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~----~~~-----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK----ASE-----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH----HHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH----HHH-----HHHHHHHHHHHH
Confidence 3456666677777777777777777766531 211000 0 00000 000 011356677778
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVE 447 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 447 (471)
+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++.++.|.+...+..+..++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877 4444 56788888888888889999988888888888888888888888888888888776
Q ss_pred H-HHHHhh
Q 012101 448 R-IRAVMK 454 (471)
Q Consensus 448 ~-~~~~m~ 454 (471)
+ .++.|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 4 455553
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=0.001 Score=59.76 Aligned_cols=180 Identities=10% Similarity=-0.048 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Q 012101 89 WNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF-ALEIGRQLHSLAVRLGLESNEFCESGFISLYS 167 (471)
Q Consensus 89 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 167 (471)
++.+-....+.+..++|+++++.+.+.+. -+...|+.--..+...| .++++..+++.++... +.+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 33444444555666789999999988642 23445666666666667 5899999999998754 556677777777776
Q ss_pred hc-C-ChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 168 KA-G-DFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAK--------EAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 168 ~~-g-~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
+. + +.++++++++++.+.+.. +|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 66 6 888999999888766554 5554444444444455 8888888888764 4567777777777766
Q ss_pred cCC-------HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 235 LGD-------LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 235 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
.++ ++++.+.+... +... +-|...|+-+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~a--I~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKS--IHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 56777777766 4433 3356666665555555554
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.1e-05 Score=59.58 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA---NVVIWGCLM 400 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~l~ 400 (471)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3445556666777788888888887776542 234566777777888888888888888877 3344 467788888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhcCCCCC
Q 012101 401 GACEKF-GNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 401 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.++... |++++|.+.++++.+..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 899999999988888877553
No 168
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.22 E-value=1.8e-05 Score=71.98 Aligned_cols=94 Identities=12% Similarity=0.040 Sum_probs=55.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----------------HhhHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--PN----------------VSSWTSMIVGYAANGLANEALDCFHYMRES 319 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 319 (471)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999988764 32 244445555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 320 GIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 320 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
. +.+...+..+..+|...|++++|...|+++.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 1233444444444444444444444444444
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.21 E-value=3.6e-06 Score=80.57 Aligned_cols=117 Identities=8% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
..+.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34567889999999999887652 234678888999999999999999999988 5555 5678999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH--HHcCCChHHHHHHHH
Q 012101 411 MGEWVAKHLQELEPWSDGAYVVLSNI--YASRGLWEEVERIRA 451 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 451 (471)
+|.+.++++.+..|.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999888888888777 888899999999988
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.20 E-value=6.2e-06 Score=63.01 Aligned_cols=108 Identities=6% Similarity=-0.031 Sum_probs=71.3
Q ss_pred HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CC----HHHH
Q 012101 326 VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMK----AN----VVIW 396 (471)
Q Consensus 326 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~----p~----~~~~ 396 (471)
..+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++. ... ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 455666667777778888888777776542 334556667777777777777777777776 221 22 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 397 GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 397 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
..+..++...|++++|...++++.+..| ++.....+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 7777777777777777777777777665 65444444443
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.8e-05 Score=61.21 Aligned_cols=98 Identities=13% Similarity=-0.078 Sum_probs=68.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNI 436 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 436 (471)
.+...+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+..|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34556666777777777777777777766 3333 456677777777777777777777777777777666677777777
Q ss_pred HHcCCChHHHHHHHHHhhcC
Q 012101 437 YASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 437 ~~~~g~~~~A~~~~~~m~~~ 456 (471)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766544
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=3.2e-05 Score=58.97 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=49.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKANV----VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS---DGAYVVLSNIYA 438 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 438 (471)
+...+...|++++|.+.|+.. ...|+. ..+..+..++...|++++|...++++.+..|.+ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344555566666666666555 222221 245555555666666666666666666655555 334555556666
Q ss_pred cCCChHHHHHHHHHhhcC
Q 012101 439 SRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 439 ~~g~~~~A~~~~~~m~~~ 456 (471)
+.|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655544
No 173
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=7.7e-06 Score=74.56 Aligned_cols=152 Identities=10% Similarity=-0.058 Sum_probs=80.8
Q ss_pred HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 290 VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666677777788888888888887764 344331 223334433332221 126777888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HcCCChHHH
Q 012101 370 LLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIY-ASRGLWEEV 446 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 446 (471)
+|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++.++.|.++..+..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888 4455 6778889999999999999999999999999988888887777773 455677888
Q ss_pred HHHHHHhhcCCCccC
Q 012101 447 ERIRAVMKHRNLAKI 461 (471)
Q Consensus 447 ~~~~~~m~~~~~~~~ 461 (471)
.+.|++|........
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888988877655443
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=1e-05 Score=63.47 Aligned_cols=62 Identities=8% Similarity=-0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 395 IWGCLMGACEKFGNVKMGEWVAKHLQEL-------EPWSDGAY----VVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 395 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.|..+..++.+.|++++|+..+++..++ +|.+...| ...+.++...|++++|++.|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666777777777777777777777777 77666666 77777777777777777777776543
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=6.8e-06 Score=65.45 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C----Cc
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW--S----DG 428 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~ 428 (471)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++..+..+. + ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444555555555555555555554 1011 1335566666777777777777777776654211 1 12
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456677777778888888877776654
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=7.8e-06 Score=65.59 Aligned_cols=103 Identities=13% Similarity=-0.068 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcC----------------CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQ----------------IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM- 387 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 387 (471)
...+......+.+.|++++|...|........ -+.+...|..+..+|.+.|++++|...++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556666677778888888888887765310 0112245566666666777777777766666
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 012101 388 PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 388 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
.+.| +...|..+..++...|++++|...|++..++.|.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3344 455666666777777777777777777777766554
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.9e-05 Score=62.82 Aligned_cols=132 Identities=9% Similarity=-0.023 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hh
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIR-PN----HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FA 362 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~ 362 (471)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444445555555555555555554432100 11 124555555666666777766666665432111111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-------PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
.+..+...+...|++++|.+.+++. +..+ ...++..+...+...|++++|.+.+++..+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 4556666777777777777777665 1111 13466777788888899999998888877653
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=1e-05 Score=61.79 Aligned_cols=109 Identities=8% Similarity=-0.031 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC-CCC----hhHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI-EPR----FAHYG 365 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 365 (471)
..|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.......- .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566666777777777777777766653 334555666666667777777777777766544211 111 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLM 400 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~ 400 (471)
.+...|...|++++|.+.|+.. ...|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666777777777777777766 4445544444443
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.11 E-value=2.2e-06 Score=64.58 Aligned_cols=91 Identities=9% Similarity=-0.039 Sum_probs=57.3
Q ss_pred CCcHHHHHHHHHHhHHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQ-IEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEW 414 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 414 (471)
.|++++|+..|++..+... -+.+...+..+..+|...|++++|.+.|++. ...| +..++..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4677777777777764200 0123345666777777777777777777776 3334 45566777777777777777777
Q ss_pred HHHHHHhcCCCCCc
Q 012101 415 VAKHLQELEPWSDG 428 (471)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (471)
.+++..+..|.++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 77777777766554
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=2.1e-05 Score=74.86 Aligned_cols=126 Identities=11% Similarity=-0.004 Sum_probs=96.1
Q ss_pred HhccCCcHHHHHHHHHHhHHhcC--C---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 012101 334 ACVHGGKVQEGKHFFEMMKNVYQ--I---EP-RFAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VIWG 397 (471)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~ 397 (471)
.+...|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888877665421 1 12 2356888888999999999998888876 345554 4789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 398 CLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.|...|...|++++|+.+++++.+ .|++.|. ....+..++...|.+++|+.++.++++.-..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998875 5776664 3456777888899999999999999875433
No 181
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=6.1e-06 Score=68.76 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=91.7
Q ss_pred hcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC--------------HHHHHHHH
Q 012101 271 KCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR-PN--------------HVTFVGVL 332 (471)
Q Consensus 271 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~--------------~~~~~~ll 332 (471)
..|+++++.+.|+.-.+ .....+..+...+...|++++|...|++..+.... |+ ...+..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 34555555555443222 23345666677777888888888888887764211 10 25677777
Q ss_pred HHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 012101 333 SACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~ 410 (471)
.+|...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++. .+.| +...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 78888889999998888887652 345667778888888899999999888887 4445 4566777777777766666
Q ss_pred HHH-HHHHHHHh
Q 012101 411 MGE-WVAKHLQE 421 (471)
Q Consensus 411 ~a~-~~~~~~~~ 421 (471)
++. ..+..+..
T Consensus 174 ~~~~~~~~~~f~ 185 (198)
T 2fbn_A 174 KKDKLTFGGMFD 185 (198)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHhc
Confidence 665 44444443
No 182
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.09 E-value=5.3e-05 Score=57.83 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 294 TSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.+++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444431 1123344444444444444444444444443
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.09 E-value=2.2e-05 Score=72.33 Aligned_cols=138 Identities=7% Similarity=-0.105 Sum_probs=100.5
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDL 370 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 370 (471)
..+..+...+.+.|++++|...|++..+. .++.. .... .+...+. -+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHHH
Confidence 45666777777788888888877776652 01000 0000 1111001 01234577888889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 371 LGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
|.+.|++++|.+.+++. ...| +...|..+..+|...|++++|...++++.++.|.+...+..+..++.+.++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 6666 567889999999999999999999999999999888888888888888888887765
Q ss_pred H
Q 012101 449 I 449 (471)
Q Consensus 449 ~ 449 (471)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=2.5e-05 Score=59.11 Aligned_cols=96 Identities=8% Similarity=-0.058 Sum_probs=64.2
Q ss_pred HHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 012101 329 VGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF 406 (471)
Q Consensus 329 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~ 406 (471)
..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|...|++. .+.| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344455667777777777777776542 234556667777777778888887777776 4445 455777777788888
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 012101 407 GNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~ 426 (471)
|++++|...++++.+..|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888887777643
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=1.6e-05 Score=72.36 Aligned_cols=126 Identities=9% Similarity=-0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACE 404 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~ 404 (471)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 456677777888899999999999988654 354321 233444444444332 237888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCccee
Q 012101 405 KFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLA 467 (471)
Q Consensus 405 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 467 (471)
+.|++++|...++++.+..|.+...|..++.+|...|++++|.+.|++..+...........+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L 304 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRREL 304 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 999999999999999999999889999999999999999999999999988766544444433
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=1e-05 Score=60.88 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHH
Q 012101 374 AGLLEEARAMVEGM-PM---KA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 374 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
.|++++|...|++. .. .| +...+..+..+|...|++++|...++++.+..|.++..+..++.+|.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555554 33 13 223455555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhc
Q 012101 449 IRAVMKH 455 (471)
Q Consensus 449 ~~~~m~~ 455 (471)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.0023 Score=57.23 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC-hhHHHH
Q 012101 238 LELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG--RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL-ANEALD 311 (471)
Q Consensus 238 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~ 311 (471)
++++..+++.+ +... +.+..+|+--.-++.+.| .++++..+++++.+ .|..+|+.-.-.....|. ++++++
T Consensus 90 l~~EL~~~~~~--L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESC--LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHH--HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 34555555555 3322 234445554444444545 35666666665543 444555555555555555 366666
Q ss_pred HHHHHHHcC
Q 012101 312 CFHYMRESG 320 (471)
Q Consensus 312 ~~~~m~~~~ 320 (471)
.++++.+..
T Consensus 167 ~~~~~I~~~ 175 (331)
T 3dss_A 167 FTDSLITRN 175 (331)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 666666653
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=8.4e-05 Score=59.43 Aligned_cols=100 Identities=11% Similarity=-0.042 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHc--------CC--------CC-CHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRES--------GI--------RP-NHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
..+......+.+.|++++|...|.+.... .. .| +...|..+..+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666666777777777777766553 00 11 124555566666677777777777776655
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 354 VYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 354 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
.. +.+...|..+..+|...|++++|...|+.. .+.|+
T Consensus 92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 41 233456666666777777777777777666 44554
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.8e-06 Score=61.74 Aligned_cols=93 Identities=14% Similarity=-0.009 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 012101 360 RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS------DGAYV 431 (471)
Q Consensus 360 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~ 431 (471)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++.+..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666777777888888888888777 3344 56677788888888888888888888888888776 44556
Q ss_pred HHHHHHHcCCChHHHHHHHHH
Q 012101 432 VLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 432 ~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.+..++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 666666666666655554443
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.87 E-value=7.5e-05 Score=54.15 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
+...+..+..++...|++++|+..|+++.+..|.++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556777777777888888888888888887777777777788888888888888877777654
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00092 Score=65.19 Aligned_cols=169 Identities=8% Similarity=-0.044 Sum_probs=131.8
Q ss_pred ChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC-
Q 012101 274 RMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGL----------ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG- 339 (471)
Q Consensus 274 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 339 (471)
..++|.+.++++.. .+..+|+.--.++...|+ ++++++.++++.+.. +-+...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567888877764 344667766666666666 899999999998864 335667777777777788
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 012101 340 -KVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG-LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF--------- 406 (471)
Q Consensus 340 -~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~--------- 406 (471)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 6799999999998763 346677877777778888 899999999998 6666 677888887777663
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHH
Q 012101 407 -----GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEE 445 (471)
Q Consensus 407 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 445 (471)
+.++++.+.++++....|.+.+.|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999998887554
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=2.7e-05 Score=74.12 Aligned_cols=100 Identities=7% Similarity=-0.112 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKAN----------------VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+..+...|.+.|++++|...|++. .+.|+ ...|..+..+|.+.|++++|+..++++.++.|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4445555555666666666666555 22221 578888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCC
Q 012101 426 SDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 426 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 462 (471)
+...|..++.+|...|++++|...|++..+.......
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999987665443
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.84 E-value=0.0034 Score=56.13 Aligned_cols=181 Identities=11% Similarity=-0.005 Sum_probs=128.3
Q ss_pred hHHHHHHHHhcCC---CCHhhHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc-HHHHHHHH
Q 012101 275 MDLAYKVFWEIDQ---PNVSSWTSMIVGYAANG--LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK-VQEGKHFF 348 (471)
Q Consensus 275 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 348 (471)
++++..+++.+.. .+..+|+.-.-.+.+.+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777654 56778888777777777 4899999999999875 3366666665555666677 58999999
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRA--------------GLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKF------ 406 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~------ 406 (471)
+.+.+.. +-|...|+.....+.+. +.++++++.+... ...| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998763 34555666555555444 4578888888887 4455 677787666665554
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCCchHHHHHH---HHHcCCChHHHHHHHHHhhcCCC
Q 012101 407 -----GNVKMGEWVAKHLQELEPWSDGAYVVLSN---IYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 407 -----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+.++++++.++++.+..|++.-.+..++. .....|..+++...+.++.+-++
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 45789999999999999977433332222 22356788899999999887554
No 194
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.78 E-value=0.00014 Score=69.54 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=39.0
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChh
Q 012101 231 ACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLAN 307 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 307 (471)
.+.+.|++++|.+.+++. ++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~A--l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQA--IELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHH--HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHH--HHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344555666666666555 3321 12344444445555555555555544444332 22334444444444444444
Q ss_pred HHHHHHHHHHH
Q 012101 308 EALDCFHYMRE 318 (471)
Q Consensus 308 ~a~~~~~~m~~ 318 (471)
+|.+.+++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.0001 Score=54.90 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 012101 343 EGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQ 420 (471)
Q Consensus 343 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 420 (471)
.|...|++..+.. +.+...+..+...|...|++++|...|++. ...| +...|..+..++...|++++|...+++..
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666665431 234556667777777777777777777776 3334 45567777777777777777777777777
Q ss_pred hcCC
Q 012101 421 ELEP 424 (471)
Q Consensus 421 ~~~~ 424 (471)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.00015 Score=51.07 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 012101 361 FAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYA 438 (471)
Q Consensus 361 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 438 (471)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...+++..+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666677777777777777766 3333 45667777777778888888888888887777777667776666665
Q ss_pred cC
Q 012101 439 SR 440 (471)
Q Consensus 439 ~~ 440 (471)
+.
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=0.00013 Score=57.19 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PM-------KANV-VIW----GCLMGACEKFGNVKMGEWVAKHLQELEPWSDGA 429 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 429 (471)
.|..+..++.+.|++++|+..+++. .+ .|+. ..| .....++...|++++|+..|++..++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777888888888887777776 44 8865 477 889999999999999999999999998876654
Q ss_pred HH
Q 012101 430 YV 431 (471)
Q Consensus 430 ~~ 431 (471)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 43
No 198
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00012 Score=67.49 Aligned_cols=116 Identities=4% Similarity=-0.096 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKA-NVVIWGCLMGAC 403 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~l~~~~ 403 (471)
...+..+...+.+.|++++|.+.|++..+.. +... .....+++. ...| +..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777775421 1100 000111111 1233 456888899999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 404 EKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 404 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.+.|++++|+..++++.+..|.+...+..++.+|.+.|++++|++.|++..+....
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988889999999999999999999999999876543
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00025 Score=52.16 Aligned_cols=70 Identities=9% Similarity=-0.071 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCcc
Q 012101 391 ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAK 460 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 460 (471)
++...+..+...+...|++++|...+++..+..|.++..+..++.+|.+.|++++|++.+++..+.....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3566788899999999999999999999999999999999999999999999999999999998876543
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.57 E-value=0.00048 Score=48.90 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 391 ANVVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
.|...+..+..++...++ .++|..++++..+.+|.++.....++..+.+.|++++|...|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466777777777765554 699999999999999999999999999999999999999999999988766
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.54 E-value=0.00091 Score=51.68 Aligned_cols=89 Identities=4% Similarity=-0.172 Sum_probs=43.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHc---
Q 012101 367 MVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYAS--- 439 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 439 (471)
+...|...+..++|.+.|++.-..-+...+..|...|.. .+|+++|...|++..+.+ ++..+..|..+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence 333344444444444444444111234444444444444 455555555555555543 23345555555555
Q ss_pred -CCChHHHHHHHHHhhcCC
Q 012101 440 -RGLWEEVERIRAVMKHRN 457 (471)
Q Consensus 440 -~g~~~~A~~~~~~m~~~~ 457 (471)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555566666655555544
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=4.6e-05 Score=59.66 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=53.4
Q ss_pred cCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCH----------HHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLL----------EEARAMVEGM-PMKA-NVVIWGCLMGACE 404 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m-~~~p-~~~~~~~l~~~~~ 404 (471)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|...|++. .+.| +..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456677777777776542 23455666666666666553 4666666666 5555 3446666666666
Q ss_pred hcC-----------CHHHHHHHHHHHHhcCCC
Q 012101 405 KFG-----------NVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 405 ~~~-----------~~~~a~~~~~~~~~~~~~ 425 (471)
..| ++++|++.|+++.+++|.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 553 666777777777666664
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.49 E-value=0.00046 Score=65.69 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=81.0
Q ss_pred HHhCCChhHHHHHHHHHHHc---CC---CCC-HHHHHHHHHHhccCCcHHHHHHHHHHhHHh----cCC-CCC-hhHHHH
Q 012101 300 YAANGLANEALDCFHYMRES---GI---RPN-HVTFVGVLSACVHGGKVQEGKHFFEMMKNV----YQI-EPR-FAHYGC 366 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~---~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~p~-~~~~~~ 366 (471)
+...|++++|+.++++..+. -+ .|+ ..+++.|..+|...|++++|..++++..+. +|- .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677777666665432 11 222 346777777777778888777777765432 121 232 346777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 367 MVDLLGRAGLLEEARAMVEGM---------PMKANVV-IWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
|...|...|++++|+.++++. ...|+.. +.+.+-.++...+.+++|+.++.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776 3345443 556666788888999999999988876
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.44 E-value=0.001 Score=64.88 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=121.4
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhccCCc----------HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHH
Q 012101 304 GLANEALDCFHYMRESGIRPN-HVTFVGVLSACVHGGK----------VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLG 372 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 372 (471)
...++|++.++++.+. .|+ ...|+.--.++...|+ ++++.+.++.+.+.. +-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3456889999999986 454 3445444344444445 899999999998763 345667877777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcC-------
Q 012101 373 RAG--LLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFG-NVKMGEWVAKHLQELEPWSDGAYVVLSNIYASR------- 440 (471)
Q Consensus 373 ~~g--~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 440 (471)
+.| +++++++.++++ ...| |..+|+.-..+..+.| .++++.+.++++.+.+|.+.++|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 888 779999999999 4444 7889998888888999 899999999999999999999999888877653
Q ss_pred -------CChHHHHHHHHHhhcCCCccCCCc
Q 012101 441 -------GLWEEVERIRAVMKHRNLAKIPAY 464 (471)
Q Consensus 441 -------g~~~~A~~~~~~m~~~~~~~~~~~ 464 (471)
+.++++.+.+++....++.....|
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 567999999998887766544433
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.43 E-value=0.00051 Score=48.25 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+...+..+...+...|++++|...+++..+..|.++..+..++.+|.+.|++++|.+.+++..+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34578888899999999999999999999999988889999999999999999999999998876543
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.0004 Score=65.02 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHHH
Q 012101 374 AGLLEEARAMVEGM---------PMKANV-VIWGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVVLSN 435 (471)
Q Consensus 374 ~g~~~~A~~~~~~m---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~ 435 (471)
.|++++|+.++++. ...|+. .+++.+..+|...|++++|+.+++++.+ .|+.+|. +++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666665543 223433 4677777778888888888877777764 3555543 5667777
Q ss_pred HHHcCCChHHHHHHHHHhhc
Q 012101 436 IYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (471)
+|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888877776643
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0044 Score=47.72 Aligned_cols=112 Identities=9% Similarity=-0.155 Sum_probs=91.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 012101 304 GLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGR----AGLLEE 379 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 379 (471)
+++++|.+.|++..+.| .|+.. +-..|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 666777778889999999999764 456677788888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 012101 380 ARAMVEGMPMKANVVIWGCLMGACEK----FGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 380 A~~~~~~m~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 424 (471)
|.++|++.-..-+...+..|...|.. .+|+++|...+++..+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998223477888888888888 8999999999999988774
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.00096 Score=62.51 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=50.3
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHH
Q 012101 371 LGRAGLLEEARAMVEGM---------PMKAN-VVIWGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDG---AYVV 432 (471)
Q Consensus 371 ~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~---~~~~ 432 (471)
+.+.|++++|++++++. ...|+ ..+++.+..+|...|++++|+.+++++.+ .++.+|. +++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666665544 11222 23666667777777777777777766654 3444443 4556
Q ss_pred HHHHHHcCCChHHHHHHHHHhh
Q 012101 433 LSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 433 l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
|+.+|...|++++|+.++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6667777777777777666654
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.00063 Score=48.81 Aligned_cols=80 Identities=15% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 367 MVDLLGRAGLLEEARAMVEGM-PMKA-NVV-IWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 367 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
....+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|...|+++.+..|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 445677788888888888887 4444 456 78888888889999999999999999988877765522 445
Q ss_pred HHHHHHHHHhh
Q 012101 444 EEVERIRAVMK 454 (471)
Q Consensus 444 ~~A~~~~~~m~ 454 (471)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.00044 Score=54.09 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=52.4
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCchHHHHHHHHHcC
Q 012101 373 RAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNV----------KMGEWVAKHLQELEPWSDGAYVVLSNIYASR 440 (471)
Q Consensus 373 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 440 (471)
+.+.+++|.+.++.. ...| +...|..+..++...+++ ++|+..|++..+++|....+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666665 3344 445666566666655543 4666666776666666666666666666655
Q ss_pred C-----------ChHHHHHHHHHhhcCCC
Q 012101 441 G-----------LWEEVERIRAVMKHRNL 458 (471)
Q Consensus 441 g-----------~~~~A~~~~~~m~~~~~ 458 (471)
| ++++|++.|++..+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 3 66667776666665443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.06 E-value=0.00067 Score=48.67 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHcCCChHHHHHHHHHhhcCCCccC
Q 012101 399 LMGACEKFGNVKMGEWVAKHLQELEPWSDG-AYVVLSNIYASRGLWEEVERIRAVMKHRNLAKI 461 (471)
Q Consensus 399 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 461 (471)
....+...|++++|...++++.+..|.++. .+..++.+|...|++++|.+.|++..+.+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 456788999999999999999999998888 999999999999999999999999988766543
No 212
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.06 E-value=0.031 Score=41.60 Aligned_cols=140 Identities=7% Similarity=0.001 Sum_probs=95.2
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 301 AANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 301 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.-.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.+-+-+.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 4467788888888877764 356667777765555556666666666664433221 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 381 RAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 381 ~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
..-+-.++ .+....+..+......|+-++-.+++..+....+.++.....+..+|.+.|+..+|.+++++.-+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 245566667777888888888888888876666667778888888888888888888888888888874
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.06 E-value=0.0016 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
.+..+...|...|++++|...|+
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~ 43 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLR 43 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHH
Confidence 33333333333444444433333
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.01 E-value=0.0052 Score=57.45 Aligned_cols=92 Identities=15% Similarity=-0.032 Sum_probs=68.0
Q ss_pred cCCcHHHHHHHHHHhHHhcC--CC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 012101 337 HGGKVQEGKHFFEMMKNVYQ--IE---PR-FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VIWGCLM 400 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~--~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~l~ 400 (471)
..|++++|..++++..+... +. |+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34678888888777654321 11 22 356788888899999999988888876 345654 4799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCCc
Q 012101 401 GACEKFGNVKMGEWVAKHLQE-----LEPWSDG 428 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~ 428 (471)
..|...|++++|+.+++++.+ .|+++|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999998875 4666653
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.00 E-value=0.0032 Score=45.28 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhH
Q 012101 292 SWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 352 (471)
.|..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444432 1123334444444444444444444444443
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.94 E-value=0.00047 Score=63.39 Aligned_cols=237 Identities=8% Similarity=0.069 Sum_probs=150.9
Q ss_pred ChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHH
Q 012101 49 DPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVL 128 (471)
Q Consensus 49 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 128 (471)
.+. +|..|-.+..+ .+.+.+|+.-|-+. .|...|..+|.+..+.|.+++-+..+.-.++.. -++..=+.|+
T Consensus 53 ~p~-VWs~LgkAqL~---~~~v~eAIdsyIkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi 123 (624)
T 3lvg_A 53 EPA-VWSQLAKAQLQ---KGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 123 (624)
T ss_dssp CCC-CSSSHHHHTTT---SSSCTTTTTSSCCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHH
T ss_pred Ccc-HHHHHHHHHHc---cCchHHHHHHHHhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHH
Confidence 355 88888888877 56677777666444 345568889999999999988888877666543 3445556788
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC------------------------C
Q 012101 129 KASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP------------------------E 184 (471)
Q Consensus 129 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------------------------~ 184 (471)
-+|++.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+. .
T Consensus 124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888766554442 4666666667777777888888877776643 1
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 012101 185 RKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNS 264 (471)
Q Consensus 185 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 264 (471)
.++.+|..+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|-+++...+++.- .. --.....+|+-
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEag--lg-lErAHmGmFTE 268 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAA--LG-LERAHMGMFTE 268 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHH--TT-STTCCHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHH--hC-CCchhHHHHHH
Confidence 3566899999999988888777554443332 222 1223455566777777777776655 31 12234556666
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----------CCHhhHHHHHHHHHhCCChhHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----------PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
|.-.|++- ++++..+-++.... .....|.-++-.|.+..++|.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66666653 34444443333221 23445666666677666666554
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.92 E-value=0.009 Score=55.89 Aligned_cols=98 Identities=11% Similarity=-0.095 Sum_probs=72.9
Q ss_pred HHHhccCCcHHHHHHHHHHhHHhcC--CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 012101 332 LSACVHGGKVQEGKHFFEMMKNVYQ--IEPR----FAHYGCMVDLLGRAGLLEEARAMVEGM---------PMKANV-VI 395 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~ 395 (471)
+..+...|++++|+.++++..+... +.|+ ..+++.+..+|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567888888888887764311 1222 356788888899999999999888876 345544 47
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQE-----LEPWSDGA 429 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 429 (471)
++.|...|...|++++|+.+++++.+ .|+++|.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 89999999999999999999998875 47766643
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.88 E-value=0.044 Score=49.29 Aligned_cols=69 Identities=12% Similarity=-0.057 Sum_probs=45.9
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 012101 358 EPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWS 426 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 426 (471)
+.+...|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445556666666566667777777777776 444666666666666777777777777777777777644
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.87 E-value=0.29 Score=47.76 Aligned_cols=115 Identities=10% Similarity=-0.050 Sum_probs=70.2
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 304 GLANEALDCFHYMRESG-IRPNHV--TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 304 ~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+.+.|...+....... ..+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 222222 2223333444555355566666655332 24444444455555677999999
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 381 RAMVEGMPMKA-N-VVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 381 ~~~~~~m~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
...|+.|+..+ + ..-.-=+..+....|+.++|..+|+.+.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999994332 2 22222244567788999999999998875
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.72 E-value=0.009 Score=53.75 Aligned_cols=78 Identities=14% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCccCCCcceeec
Q 012101 390 KANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLAKIPAYSLATR 469 (471)
Q Consensus 390 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 469 (471)
..+..+|..+...+...|++++|...++++..+++ +...|..++..+.-.|++++|.+.+++....++.. +.+.|.+.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~-~t~~~~~~ 351 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA-NTLYWIEN 351 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH-HHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-ChHHHHhC
Confidence 45778888888888888999999999999999985 44567788999999999999999999988876654 35665544
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.025 Score=57.86 Aligned_cols=190 Identities=16% Similarity=0.063 Sum_probs=107.6
Q ss_pred HHHHhcCChhhHHH-HhccCC-CCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 164 SLYSKAGDFEKARK-VFDENP-ERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 164 ~~~~~~g~~~~a~~-~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
......+++++|.+ ++..++ .. ....++..+.+.|.+++|+++.+. | ..- .......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~~~-------~-~~~----f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNISPD-------Q-DQK----FELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHCCC-------H-HHH----HHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecCCC-------c-chh----eehhhhcCCHHHH
Confidence 33445788888888 665544 22 226677777788888888776531 1 111 2233456888888
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGI 321 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 321 (471)
.++.+.+ .+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...
T Consensus 672 ~~~~~~~--------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~----------- 727 (814)
T 3mkq_A 672 RDLLTDE--------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLV----------- 727 (814)
T ss_dssp HHHHTTC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHH-----------
T ss_pred HHHHHhh--------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHH-----------
Confidence 8875433 2566788888888888888888887766543 122222233334333333
Q ss_pred CCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----HHHH
Q 012101 322 RPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANV----VIWG 397 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~ 397 (471)
.+.......|+++.|...+-... -+...++.|.+.+++++|..+-+..+ |.. ....
T Consensus 728 --------~~~~~a~~~~~~~~A~~~~~~~g----------~~~~a~~~~~~~~~~~~A~~lA~~~~--~~~~~i~~~~~ 787 (814)
T 3mkq_A 728 --------TLAKDAETTGKFNLAFNAYWIAG----------DIQGAKDLLIKSQRFSEAAFLGSTYG--LGDNEVNDIVT 787 (814)
T ss_dssp --------HHHHHHHHTTCHHHHHHHHHHHT----------CHHHHHHHHHHTTCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred --------HHHHHHHHcCchHHHHHHHHHcC----------CHHHHHHHHHHcCChHHHHHHHHHhC--CChHHHHHHHH
Confidence 33444444555555555554431 12345556666677777777766653 222 2333
Q ss_pred HHHHHHHhcCCHHHH
Q 012101 398 CLMGACEKFGNVKMG 412 (471)
Q Consensus 398 ~l~~~~~~~~~~~~a 412 (471)
.....+...|+.+.|
T Consensus 788 ~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 788 KWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHTTTCHHHH
T ss_pred HHHHHHHhccchhHH
Confidence 333444455554433
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.022 Score=58.40 Aligned_cols=26 Identities=8% Similarity=-0.098 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
..|..+...+.+.|+++.|.+.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555555555555555544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.58 E-value=0.0094 Score=51.38 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=59.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCC-CchHHHHHHHHHcC-CChHH
Q 012101 377 LEEARAMVEGM-PMKAN---VVIWGCLMGACEKF-----GNVKMGEWVAKHLQELEPWS-DGAYVVLSNIYASR-GLWEE 445 (471)
Q Consensus 377 ~~~A~~~~~~m-~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 445 (471)
...|...+++. .+.|+ ...|..+...|.+. |+.++|.+.|++..+++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 55565 44666666667663 77777777777777777753 66777777777764 77777
Q ss_pred HHHHHHHhhcCCCccCCCc
Q 012101 446 VERIRAVMKHRNLAKIPAY 464 (471)
Q Consensus 446 A~~~~~~m~~~~~~~~~~~ 464 (471)
|.+.+++....++...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 7777777777766654543
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.21 E-value=0.032 Score=39.31 Aligned_cols=67 Identities=7% Similarity=-0.129 Sum_probs=50.0
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 359 PRFAHYGCMVDLLGRAGL---LEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+...+..+..++...++ .++|..++++. ...| +......+...+.+.|++++|...|+++.+..|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666667776654444 67888888887 5555 5567777788888899999999999998888876
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.11 E-value=0.014 Score=45.08 Aligned_cols=88 Identities=11% Similarity=-0.022 Sum_probs=66.2
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 012101 339 GKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAG---LLEEARAMVEGM-PMK-A--NVVIWGCLMGACEKFGNVKM 411 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~l~~~~~~~~~~~~ 411 (471)
+....+++.|.+.... + .++..+.-.+..++++.+ +.+++..+|+.. ... | +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4566777777776553 3 367777777888888888 566888888888 333 5 34566667778899999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 012101 412 GEWVAKHLQELEPWSDG 428 (471)
Q Consensus 412 a~~~~~~~~~~~~~~~~ 428 (471)
|.+.++.+.+.+|.+..
T Consensus 90 A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcCCCCHH
Confidence 99999999999997754
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.28 Score=38.82 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHH
Q 012101 269 YGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFF 348 (471)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 348 (471)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34555666665555544 3445566666666666666666666554331 222222333345544444443
Q ss_pred HHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 012101 349 EMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPM 389 (471)
Q Consensus 349 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 389 (471)
+....+ | -++.....+...|+++++.++|.+.+.
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 333221 1 133344445556666666666655543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.08 E-value=0.041 Score=39.69 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 362 AHYGCMVDLLGRAGLLEEARAMVEGM-----P----MKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 362 ~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
.-+-.|...+.+.|+++.|...|+.. . -.+....+..+..++.+.|+++.|...++++.+..|.++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 34445666666666666666666654 1 1234567888888888999999999999988888887765433
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.77 E-value=0.042 Score=42.43 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG---KVQEGKHFFEMMKNVYQIEP--RFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 380 (471)
...+.+.|.+....|. ++..+...+..++++.+ +++++..++++..+. . .| ....+-.+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3455666666655553 56666666666777776 566788888877665 2 24 234444566677888888888
Q ss_pred HHHHHhC-CCCCC
Q 012101 381 RAMVEGM-PMKAN 392 (471)
Q Consensus 381 ~~~~~~m-~~~p~ 392 (471)
.+.++.+ .+.|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 8888877 55663
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.59 E-value=0.052 Score=39.14 Aligned_cols=68 Identities=7% Similarity=-0.193 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCCc
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELE-------PWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNLA 459 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 459 (471)
+..-+..+...+.+.|++..|...++.+.+.. +....++..|+.+|.+.|++++|...+++..+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45566778899999999999999999987743 223347889999999999999999999999875443
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.71 Score=36.57 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=60.8
Q ss_pred HHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHH
Q 012101 164 SLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQ 243 (471)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 243 (471)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445667777777766555 2344677777777777777777777766542 2334444444566655555
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 012101 244 VHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ 287 (471)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (471)
+-+.. ...| -++.....+.-.|+++++.++|.+..+
T Consensus 82 la~iA--~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIA--QTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHH--HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHH--HHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 44443 2232 134444555566777777766655543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.31 E-value=0.52 Score=40.71 Aligned_cols=115 Identities=13% Similarity=-0.003 Sum_probs=55.1
Q ss_pred hcCChhhHHHHhccCCCCCcc--hHHHHHHH-HHcC--CC------hhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHc
Q 012101 168 KAGDFEKARKVFDENPERKLG--SWNAIIAG-LSQD--GR------AKEAIDMFIGLKKCGFEPD---DVTMVSVTSACG 233 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~--~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~ 233 (471)
+.++..+..+.+.+....++. .|..++.+ +... |+ ...|...+++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 344445555666666554544 35554442 2222 22 34455555555544 343 345555555555
Q ss_pred Cc-----CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhcC
Q 012101 234 SL-----GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKC-GRMDLAYKVFWEID 286 (471)
Q Consensus 234 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~ 286 (471)
+. |+.++|.+.|++. +..+..-+..++....+.++.. |+.+.+.+.+++..
T Consensus 211 ~vPp~~gGd~ekA~~~ferA--L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHL--TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHH--HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHH--HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 52 5666666666665 3333222233444444444442 55555555554443
No 232
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.28 E-value=0.0017 Score=59.83 Aligned_cols=237 Identities=11% Similarity=0.092 Sum_probs=159.0
Q ss_pred CcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 155 NEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
.+.+|+.|..+....+.+.+|.+.| ++..|+..|..+|....+.|.+++-+.++...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 4456777888888878777777666 334566678888888888888888888887766553333 333567778888
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC------------------------CCH
Q 012101 235 LGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ------------------------PNV 290 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~ 290 (471)
.++..+.+++ -..||..-...+.+-|...|.++.|.-+|..+.. .++
T Consensus 129 ~~rL~elEef---------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAELEEF---------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSSTTTST---------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHHHHHH---------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 8876543332 1235555566778888888888888877776652 567
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC-CCChhHHHHHHH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI-EPRFAHYGCMVD 369 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~ 369 (471)
.||..+-.+|...+.+.-|.-.--.+.- .||. ...++..|-..|.+++-+.+++.-. |+ .....+|+-|.-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmFTELaI 271 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAI 271 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHHHHHHH
Confidence 8999998999999888777665544442 2332 3345667888888888888888765 33 244566777777
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 012101 370 LLGRAGLLEEARAMVEGM----PMKA------NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m----~~~p------~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
.|++- ++++..+.++-. .++. ....|.-++-.|.+-.+++.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 77665 566666665554 2221 2234677777777777777653
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.64 E-value=0.076 Score=40.46 Aligned_cols=105 Identities=11% Similarity=-0.016 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHhccCCcH------HHHHHHHHHhHHhcCCCCChh-HHHHHHH------HHHhcCCHHHHHHHHHhC---
Q 012101 324 NHVTFVGVLSACVHGGKV------QEGKHFFEMMKNVYQIEPRFA-HYGCMVD------LLGRAGLLEEARAMVEGM--- 387 (471)
Q Consensus 324 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~li~------~~~~~g~~~~A~~~~~~m--- 387 (471)
|..+|-..+...-+.|+. ++.+++|++... .++|+.. .|...|. .+...+++++|.++|+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445555555555555666 666667766654 3344321 1222221 112345666666666666
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 012101 388 PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYV 431 (471)
Q Consensus 388 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 431 (471)
..+- ...|-...+.-.+.|+++.|.+++.+...++|.+.....
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 1111 455555555556666666666666666666665544333
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.34 E-value=0.42 Score=35.43 Aligned_cols=88 Identities=13% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 012101 341 VQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE---ARAMVEGM-PMK-A--NVVIWGCLMGACEKFGNVKMGE 413 (471)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 413 (471)
...+.+.|...... |. ++..+--.+..++.+..+..+ +..+++.. ... | .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444555544332 22 555555556666666665555 66666665 222 4 2234555667888889999999
Q ss_pred HHHHHHHhcCCCCCchH
Q 012101 414 WVAKHLQELEPWSDGAY 430 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~ 430 (471)
+.++.+.+..|.+..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhCCCCHHHH
Confidence 99999988888776443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.3 Score=48.68 Aligned_cols=55 Identities=15% Similarity=0.007 Sum_probs=49.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
...|...|+++.|+.+.++....-|..-.+|..|+.+|.+.|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4556788999999999999999999888899999999999999999999999986
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.57 E-value=1.7 Score=32.49 Aligned_cols=63 Identities=6% Similarity=-0.038 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCC
Q 012101 293 WTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQI 357 (471)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 357 (471)
....+......|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+. |+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 34455566666776766666666433 23556666666667777777777777777766554 44
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.44 E-value=1.3 Score=33.77 Aligned_cols=101 Identities=12% Similarity=0.205 Sum_probs=66.1
Q ss_pred CCHhhHHHHHHHHHhCCCh------hHHHHHHHHHHHcCCCCCHHH----HHHHHH---HhccCCcHHHHHHHHHHhHHh
Q 012101 288 PNVSSWTSMIVGYAANGLA------NEALDCFHYMRESGIRPNHVT----FVGVLS---ACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~~~ll~---~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.|..+|-..+...-+.|++ ++..++|++.... ++|+... |..+.- .+...+++++|.++|+.+...
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5666777777777777877 7777888877765 5665321 111110 112337888899999888664
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 012101 355 YQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKA 391 (471)
Q Consensus 355 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 391 (471)
.-.- ...|....+.-.+.|+..+|.+++.+. |..|
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 2222 666766667677899999999998887 4444
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.08 E-value=0.065 Score=39.75 Aligned_cols=86 Identities=6% Similarity=-0.204 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHcCCChHHHHH
Q 012101 376 LLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKM---GEWVAKHLQELE-P-WSDGAYVVLSNIYASRGLWEEVER 448 (471)
Q Consensus 376 ~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~ 448 (471)
....+.+-+.+. .-.|+..+--.+.+++.++.+... ++.+++.+.+.+ | ........|+-++.+.|++++|.+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 334444444444 124778887888889998887665 888888888765 3 223466688889999999999999
Q ss_pred HHHHhhcCCCccC
Q 012101 449 IRAVMKHRNLAKI 461 (471)
Q Consensus 449 ~~~~m~~~~~~~~ 461 (471)
.++.+.+..+...
T Consensus 96 ~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 96 YVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHHhCCCCH
Confidence 9999988665443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.53 E-value=6.8 Score=36.56 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHcCcCCHHHHHHHHHHHHHhh--cCCCCC--hh
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD-----DVTMVSVTSACGSLGDLELALQVHKYVFQVK--SKQKSD--TL 260 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~ 260 (471)
...|...+...|++.+|.+++..+...-...+ ...+...+..|...+++.+|..++..+.... ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 35577778888888888888888764311111 1345556667777778877777777652111 111121 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
.+...+..+...+++.+|.+.|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4455556666666666666655444
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.63 E-value=6.5 Score=34.44 Aligned_cols=170 Identities=8% Similarity=0.041 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAID----MFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-+ +++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566667888899999888633 2334566677666555 45666677889999888888888755
Q ss_pred cCCH-HHHHHHHHHHHH--hhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhC---CCh
Q 012101 235 LGDL-ELALQVHKYVFQ--VKSK--QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAAN---GLA 306 (471)
Q Consensus 235 ~~~~-~~a~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~ 306 (471)
...- ..-.++.+.+.. .+.| ..-++.....+...|.+.|++.+|+.-|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 3211 111233333310 2222 2346778889999999999999999877633323445554444333332 222
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 307 NEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 307 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.++ +...-..++. |...++...|..+++...+.
T Consensus 185 ~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 221 2222233333 34568899999888877644
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.56 E-value=0.98 Score=35.18 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 429 AYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 429 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
.-..+..+|.+.|++++|+.+++.+..+
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 4456888999999999999999987543
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.45 E-value=6 Score=36.93 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHHHHhhc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 012101 235 LGDLELALQVHKYVFQVKS-----KQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 235 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (471)
.++++.|.+.+..+ .+. +......+...++..|...|+++...+.+.-+
T Consensus 29 ~~~~~~a~e~ll~l--EK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 29 QNDCNSALDQLLVL--EKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHH--HHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH--HHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 36777787777666 332 23444566777777888888887766555443
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.51 E-value=2.9 Score=31.60 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 358 EPRFAHYGCMVDLLGRAGLLE---EARAMVEGM-PMKA-N-VVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.|+..+--.+..++.+..+.+ ++..+++.. ...| + ....-.|.-++.+.|++++|.++.+.+.+..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456655555666676666544 466666666 2233 2 234445556788888888888888888888886643
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.16 E-value=18 Score=37.03 Aligned_cols=253 Identities=10% Similarity=-0.005 Sum_probs=131.6
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcCcCCHHHHHHHHHHHHHhhcCC-------CCChhHHHHH
Q 012101 195 AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV--SVTSACGSLGDLELALQVHKYVFQVKSKQ-------KSDTLMLNSL 265 (471)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~l 265 (471)
-+....|+.++++.++......+-..+...-. .+.-+....|....+..++... +...- .+....-.++
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~--L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNI--IVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH--HHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHH--HcCccccccccccHHHHHHHHH
Confidence 34667788888888877665422122333222 2223334555545677777666 33321 0112222222
Q ss_pred --HHHHHhcCChHHHHHHHHhcCCCCHhh--HH--HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--Hhcc
Q 012101 266 --IDMYGKCGRMDLAYKVFWEIDQPNVSS--WT--SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLS--ACVH 337 (471)
Q Consensus 266 --~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~ 337 (471)
.-+|.-.++-+-...+...+...+... .. +|...++-.|+.+-...++..+.+.. +......+.. ++..
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333334455443334444443444322 12 22333456677777777887776642 3333333333 3446
Q ss_pred CCcHHHHHHHHHHhHHhcCCCCChhHHH--HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHH
Q 012101 338 GGKVQEGKHFFEMMKNVYQIEPRFAHYG--CMVDLLGRAGLLEEARAMVEGMPMKANVVIWGC--LMGACEKFGNVKMGE 413 (471)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--l~~~~~~~~~~~~a~ 413 (471)
.|+.+.+..+.+.+... -.|....-. ++.-+|+-.|+.....+++..+...++..+-.. +.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence 78888888888888643 133333222 233467788898888888888832333333233 333444567766667
Q ss_pred HHHHHHHhcCCCCCchHH--HHHHHHHcCCC-hHHHHHHHHHhhcC
Q 012101 414 WVAKHLQELEPWSDGAYV--VLSNIYASRGL-WEEVERIRAVMKHR 456 (471)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~A~~~~~~m~~~ 456 (471)
++++.+.+.+ ++.+-. .+..+....|. ..+|..++..+...
T Consensus 615 rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D 658 (963)
T 4ady_A 615 RIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD 658 (963)
T ss_dssp HHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC
Confidence 7776555533 232222 33333333443 36788888888653
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.10 E-value=0.9 Score=41.68 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 012101 363 HYGCMVDLLGRAGLLEEARAMVEGM-PMKA-NVVIWGCLMGACEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 363 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 421 (471)
....++..+...|++++|...+..+ ...| +...|..++.++.+.|+..+|.+.|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777776666 3344 666777777777777777777777776643
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.67 E-value=2 Score=30.14 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
+.-++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344667777777778889999999999999999999999999999997765433 446766654
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.27 E-value=8.3 Score=41.05 Aligned_cols=79 Identities=6% Similarity=-0.001 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHhcc----CCCCCc--c--hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 012101 158 CESGFISLYSKAGDFEKARKVFDE----NPERKL--G--SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVT 229 (471)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~----~~~~~~--~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 229 (471)
.|.-++..+-+.+.++.+.++-.. ....+. . .|..+.+.+...|++++|...+-.+.....+ ...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHH
Confidence 355666667677766665554432 222221 1 4677777788888888887777777655332 33445555
Q ss_pred HHHcCcCCH
Q 012101 230 SACGSLGDL 238 (471)
Q Consensus 230 ~~~~~~~~~ 238 (471)
...|..+..
T Consensus 979 ~~lce~~~~ 987 (1139)
T 4fhn_B 979 NQLTKQGKI 987 (1139)
T ss_dssp HHHHHHCCH
T ss_pred HHHHhCCCh
Confidence 555554443
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.24 E-value=3.9 Score=28.49 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45777777777776553 22333334466788999999999999999999998887754 577888888888878877
Q ss_pred CCCCCCHHHHHH
Q 012101 216 CGFEPDDVTMVS 227 (471)
Q Consensus 216 ~g~~p~~~~~~~ 227 (471)
.| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 555555543
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.62 E-value=1.2 Score=33.15 Aligned_cols=71 Identities=13% Similarity=-0.005 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 012101 358 EPRFAHYGCMVDLLGRAGLLE---EARAMVEGM-PMKA--NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDG 428 (471)
Q Consensus 358 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 428 (471)
.|+..+--.+..++.+..+.+ ++..++++. ...| ....+-.+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555445555666665543 466666666 2234 2345555667788888888888888888888877653
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.61 E-value=5.4 Score=39.82 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=29.2
Q ss_pred hccCCcHHHHHHHHHHhHHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 012101 335 CVHGGKVQEGKHFFEMMKNVYQIEPR-FAHYGCMVDLLGRAGLLEEARAMVEGMP 388 (471)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 388 (471)
|...|+++.|+++-++.... .|+ ..+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456666666666665532 333 4456666666666666666666666664
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.38 E-value=4.1 Score=28.41 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKK 215 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 215 (471)
..++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45777777777776553 22233334456778899999999999999999988877754 466777788777777776
Q ss_pred CCCCCCHHHHHH
Q 012101 216 CGFEPDDVTMVS 227 (471)
Q Consensus 216 ~g~~p~~~~~~~ 227 (471)
.| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.13 E-value=5.2 Score=28.06 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 379 EARAMVEGM---PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 379 ~A~~~~~~m---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
++.+-++.+ ..-|+..+..+.++||.+.+|+..|.++|+-++..-.....+|-.+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344444444 667899999999999999999999999998887654333445665553
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.15 E-value=12 Score=39.74 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCC--------------------------CCHhhHHHHHHHHHhCCChhHHHH
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ--------------------------PNVSSWTSMIVGYAANGLANEALD 311 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~~li~~~~~~~~~~~a~~ 311 (471)
+....-.+..+|...|++++|...|.+... .-..-|..++..+-+.|.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 343344556677888888888888877642 001235667777777888888887
Q ss_pred HHHHHHHcCCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHH
Q 012101 312 CFHYMRESGIRPNH----VTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEE 379 (471)
Q Consensus 312 ~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 379 (471)
+-+...+....-+. ..|..+..++...|++++|...+-.+... .--......||...|..|..+.
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHhCCChhh
Confidence 77766554221111 14666777778888888887777766432 2233456666666665555443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.11 E-value=3.4 Score=37.79 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH----hcCCCCChhH
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN----VYQIEPRFAH 363 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 363 (471)
.++..+...|+++++...+..+.... +-+...+..++.++...|+..+|.+.|+...+ ..|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777776666666542 34566777777777777777777777766543 3466666554
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.04 E-value=5.7 Score=30.91 Aligned_cols=52 Identities=6% Similarity=-0.074 Sum_probs=26.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC-----CCH-------hhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQ-----PNV-------SSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
-+..+...|.++.|+-+.+.+.. ++. .++..+..++...|++.+|...|++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34555566666666655544331 221 13344455555566666666666554
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.54 E-value=19 Score=31.85 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDC----FHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
+|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666678889999999887532 23445667776655554 455667788999888888888776
Q ss_pred cCCcHHHH-HHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 012101 337 HGGKVQEG-KHFFEMMK---NVYQ--IEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVK 410 (471)
Q Consensus 337 ~~~~~~~a-~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~ 410 (471)
....-+-. ..+.+++. .++| -.-++.....+...|.+.+++.+|...|- .+..+....+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 55431111 11222221 1112 23456677788899999999999998884 355555567766665555544311
Q ss_pred HHHHHHHHHHhcCCCCCchHH-HHHHHHHcCCChHHHHHHHHHhhc
Q 012101 411 MGEWVAKHLQELEPWSDGAYV-VLSNIYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 411 ~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 455 (471)
....|. ..+--|...++...|..+++...+
T Consensus 185 ---------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ---------------TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ---------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 112222 334456677888888887666553
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.38 E-value=5 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVD 369 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 369 (471)
.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+-++.+.| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999999977644 34556776654
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.95 E-value=25 Score=31.99 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=74.3
Q ss_pred HHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCC--CChhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCHhhH---
Q 012101 223 VTMVSVTSACGSLGDLELALQVHKYVFQVKSKQK--SDTLMLNSLIDMYGKCGR-MDLAYKVFWEIDQ---PNVSSW--- 293 (471)
Q Consensus 223 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 293 (471)
.....+...|.+.|+.++..+++......-..+. ........+++.+....+ .+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666777777776666665411001111 012234455555554322 2222222222221 111222
Q ss_pred ---HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhccCCcHHHHHHHHHHhHHhc-CCCCChhHH
Q 012101 294 ---TSMIVGYAANGLANEALDCFHYMRESGIRPNH-----VTFVGVLSACVHGGKVQEGKHFFEMMKNVY-QIEPRFAHY 364 (471)
Q Consensus 294 ---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~ 364 (471)
.-++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 13556666677777776666666553111111 123334445566666666666666554321 121222222
Q ss_pred HH----HHHHHH-hcCCHHHHHHHHHh
Q 012101 365 GC----MVDLLG-RAGLLEEARAMVEG 386 (471)
Q Consensus 365 ~~----li~~~~-~~g~~~~A~~~~~~ 386 (471)
.. -...+. ..+++..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11 112234 56666666665544
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=83.69 E-value=16 Score=29.54 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCC
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANG 304 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 304 (471)
+..+-...+.++.+.|..+....+...+..++...-...+.++.+.+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33344444444444444333333333333344444444444444443
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.60 E-value=12 Score=27.92 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=39.5
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 012101 386 GMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSN 435 (471)
Q Consensus 386 ~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 435 (471)
.+.+-|+..+..+.+++|.+.+|+..|.++|+-++..-.....+|-.+++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34677999999999999999999999999999988655334556666554
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=83.40 E-value=9.3 Score=26.64 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 236 GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
..-++|..+-+.+ ...+. ...+--.-+..+...|+|++|..+.+...-||...|-++- -.+.|..+++..-+.+
T Consensus 20 H~HqEA~tIAdwL--~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWL--ERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHH--HHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 3456666666665 33332 2222222344567788999999888888888888887764 3577888888888878
Q ss_pred HHHcCCCCCHHHHHH
Q 012101 316 MRESGIRPNHVTFVG 330 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ 330 (471)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87776 555555543
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.77 E-value=10 Score=26.53 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHH
Q 012101 236 GDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHY 315 (471)
Q Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (471)
..-++|..+-+.+ ...+. ...+--.-+..+...|+|++|..+.+...-||...|-++-. .+.|..+++..-+.+
T Consensus 21 H~HqEA~tIAdwL--~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 21 HYHEEANCIAEWL--HLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TCHHHHHHHHHHH--HHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 3456666666655 33332 22222223445667888888888888888888888876643 466777777777777
Q ss_pred HHHcCCCCCHHHHHH
Q 012101 316 MRESGIRPNHVTFVG 330 (471)
Q Consensus 316 m~~~~~~p~~~~~~~ 330 (471)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77665 555555543
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=81.58 E-value=15 Score=29.69 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 012101 394 VIWGCLMGACEKFGNVKMGEWVAKHLQELE 423 (471)
Q Consensus 394 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 423 (471)
..|......+-..|++++|.++|+...+.+
T Consensus 116 lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 116 LFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444444455555555554444443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.45 E-value=24 Score=29.99 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=70.7
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh----HHHHHHHHHHhc
Q 012101 299 GYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA----HYGCMVDLLGRA 374 (471)
Q Consensus 299 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~~~~~~ 374 (471)
...+.|+.++++.....-++.. +-|...-..+++.+|-.|++++|.+-++...+. .|+.. +|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 4566788888888887777663 446666667778888888888888888887644 45533 33333332
Q ss_pred CCHHHHHH-HHHhC---C-CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCC
Q 012101 375 GLLEEARA-MVEGM---P-MKANVVIWGCLMGACE--KFGNVKMGEWVAKHLQELEPWSD 427 (471)
Q Consensus 375 g~~~~A~~-~~~~m---~-~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~ 427 (471)
+...+ +|..- + +.....-...++.+.. ..|+.++|..+-.++.+.-|..+
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111 22211 1 1112223334444443 56888888888888877765544
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=80.88 E-value=9.5 Score=28.39 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHhccCC---cHHHHHHHHHHhHHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 012101 322 RPNHVTFVGVLSACVHGG---KVQEGKHFFEMMKNVYQIEP--RFAHYGCMVDLLGRAGLLEEARAMVEGM-PMKAN 392 (471)
Q Consensus 322 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 392 (471)
.|+..|--....++.++. +..+++.+++++.+. + | ....+-.+.-++.+.|++++|.+..+.+ .+.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344444333444444443 334566666666543 2 3 2233444555666666666666666666 55553
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.96 E-value=22 Score=28.66 Aligned_cols=92 Identities=10% Similarity=0.005 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 257 SDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|..+ +...+..+.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344455555556666665544444445555566665555666666655533 3333333332 345555555555555
Q ss_pred cCCcHHHHHHHHHHhHH
Q 012101 337 HGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 337 ~~~~~~~a~~~~~~~~~ 353 (471)
+.+. ..+...+..+..
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 5554 333444444433
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.84 E-value=5 Score=34.06 Aligned_cols=118 Identities=13% Similarity=0.025 Sum_probs=71.0
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 195 AGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
....+.|+++++++....-++.. +-|...-..++..+|-.|+++.|.+-++...+......+....|..+|.+=..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~--- 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA--- 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH---
Confidence 34567788888888887777663 56777777888888888999998888887744444444444455555432111
Q ss_pred hHHHHHHHHhcCC-----CCHhhHHHHHHHHH--hCCChhHHHHHHHHHHHc
Q 012101 275 MDLAYKVFWEIDQ-----PNVSSWTSMIVGYA--ANGLANEALDCFHYMRES 319 (471)
Q Consensus 275 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~ 319 (471)
=.++|..-.. ....-...++.+.. ..|+.++|.++-.++.+.
T Consensus 81 ---R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 ---RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 0123322222 12223334444443 357888887777776554
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.52 E-value=12 Score=34.75 Aligned_cols=61 Identities=5% Similarity=-0.080 Sum_probs=29.3
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHhHHhc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 327 TFVGVLSACVHGGKVQEGKHFFEMMKNVY-QIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 327 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
+...+...|.+.|+++.|.+.+.++.... +...-...+-.+++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555555555555555554331 11112234444555555555555555555544
No 269
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.51 E-value=8.4 Score=32.79 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc---hHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHH
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY---TLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC--ESGFISL 165 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~ 165 (471)
..+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+- ++.+.+.|..++... -.+.+..
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 3444555666654 333444455444322 11233444444555443 333344454443221 1123333
Q ss_pred HHhcCChhhHHHHhcc
Q 012101 166 YSKAGDFEKARKVFDE 181 (471)
Q Consensus 166 ~~~~g~~~~a~~~~~~ 181 (471)
.+..|+.+-+..+++.
T Consensus 79 A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4445555555555443
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=78.48 E-value=13 Score=34.25 Aligned_cols=355 Identities=9% Similarity=0.046 Sum_probs=166.2
Q ss_pred cCchHHHHHHhcccCCCCchh--hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhccCCchHHHH
Q 012101 67 LNQIYAHIIRTHMLHSYSAAF--HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCY--TLPIVLKASCQLFALEIGRQ 142 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~ 142 (471)
.|+.+-...+++.- ..++.. ...+.+...++.|+.+- ++.+.+.|..++.. .-.+.+...+..|+.+-+
T Consensus 24 ~g~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v-- 96 (437)
T 1n11_A 24 MGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEV----AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV-- 96 (437)
T ss_dssp HTCHHHHHHHHHTT-CCSCCSSSCCCCHHHHHHHHTCHHH----HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH--
T ss_pred CCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH--
Confidence 46677776666642 222211 12234445556676544 44444455444322 122344455566666544
Q ss_pred HHHHHHHhCCCCCcch--HHHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 012101 143 LHSLAVRLGLESNEFC--ESGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCG 217 (471)
Q Consensus 143 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g 217 (471)
+.+.+.|..++... -.+.+...++.|+.+.+..+++.-...+.. .++ .+...+..|+.+ +++.+.+.|
T Consensus 97 --~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g 169 (437)
T 1n11_A 97 --KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVR----VAELLLERD 169 (437)
T ss_dssp --HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTT
T ss_pred --HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCC
Confidence 44455565554322 223455667788998888888764433221 222 333445566655 344445556
Q ss_pred CCCCHHH--HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhH--HHHHHHHHHhcCChHHHHHHHHhcCCC---CH
Q 012101 218 FEPDDVT--MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLM--LNSLIDMYGKCGRMDLAYKVFWEIDQP---NV 290 (471)
Q Consensus 218 ~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 290 (471)
..++... -.+.+...+..|+.+-+ +.+ .+.+..++... -.+.+...+..|+.+-+..+++.-..+ +.
T Consensus 170 ~~~~~~~~~g~t~L~~A~~~~~~~~v----~~L--l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~ 243 (437)
T 1n11_A 170 AHPNAAGKNGLTPLHVAVHHNNLDIV----KLL--LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHTTCHHHH----HHH--GGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHH----HHH--HhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence 5544321 11223333455665543 334 45554443221 122344556778888888887754432 22
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhH--HH
Q 012101 291 SSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHV---TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAH--YG 365 (471)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~--~~ 365 (471)
.-.+.+ ...+..|+.+-+ +.+.+.|..++.. ..+. +...+..|..+-+..+++ . |..++... -.
T Consensus 244 ~g~t~L-~~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~----~-g~~~~~~~~~g~ 312 (437)
T 1n11_A 244 QGVTPL-HLAAQEGHAEMV----ALLLSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLIK----H-GVMVDATTRMGY 312 (437)
T ss_dssp TCCCHH-HHHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHH----H-TCCTTCCCSSCC
T ss_pred CCCCHH-HHHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHh----C-CccCCCCCCCCC
Confidence 222222 333456665443 3444555544322 2222 333345566554444433 2 43333211 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCC
Q 012101 366 CMVDLLGRAGLLEEARAMVEGMPMKA---NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGL 442 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 442 (471)
+.+...+..|+.+-+.-+++.- ..+ |..-.+.| ...+..|+.+-+..+++.-...+..+..-... +..-.+.|
T Consensus 313 t~L~~A~~~g~~~~v~~Ll~~g-ad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~-l~~A~~~g- 388 (437)
T 1n11_A 313 TPLHVASHYGNIKLVKFLLQHQ-ADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP-LAIAKRLG- 388 (437)
T ss_dssp CHHHHHHHSSCSHHHHHHHHTT-CCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH-HHHHHHTT-
T ss_pred CHHHHHHHcCcHHHHHHHHhcC-CCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCCCCCCCCCH-HHHHHHcC-
Confidence 2334455678877666666653 222 22222233 33345677665555554322222112111112 22223444
Q ss_pred hHHHHHHHHHhhcC
Q 012101 443 WEEVERIRAVMKHR 456 (471)
Q Consensus 443 ~~~A~~~~~~m~~~ 456 (471)
+.+..++++.....
T Consensus 389 ~~~~~~~l~~~~~~ 402 (437)
T 1n11_A 389 YISVTDVLKVVTDE 402 (437)
T ss_dssp CHHHHHHHHHHCCC
T ss_pred cHHHHHHHHhcccc
Confidence 45666777766544
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.13 E-value=36 Score=30.06 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDM----FIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
|.++..=|.+.+++++|.+++-. -...+.+.|+...|-++ ++.+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44556668889999999988632 23345566776655544 4666677889999888888888765
Q ss_pred cCC--HHHHHHHHHHHHH--hhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhH
Q 012101 235 LGD--LELALQVHKYVFQ--VKSK--QKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANE 308 (471)
Q Consensus 235 ~~~--~~~a~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (471)
... ++. ..+.+.+.. .+.| ..-++.....+...|.+.+++.+|+.-|---.++....+..++.-+...+...
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 543 222 223333310 2223 34467778889999999999999998885333333456655444433333211
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHH
Q 012101 309 ALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKN 353 (471)
Q Consensus 309 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 353 (471)
.++.+.-..++. |...++...|...++...+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 123333334443 4446788888887766654
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.22 E-value=21 Score=26.92 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCC-chHHHHHHHHHcCCChHHHHHHHHHhhcC
Q 012101 391 ANVVIWGCLMGACEKFGN---VKMGEWVAKHLQELEPWSD-GAYVVLSNIYASRGLWEEVERIRAVMKHR 456 (471)
Q Consensus 391 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 456 (471)
|+..+--.+.+++.++.+ ..+++.+++.+.+.+|... .....|.-++.+.|++++|++..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444432 2344444444444433221 13334444455555555555555544443
No 273
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.96 E-value=17 Score=29.89 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=14.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCC
Q 012101 94 RLYTRLEAPKKALDIYIFMSRAGVLPD 120 (471)
Q Consensus 94 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 120 (471)
...++.|+.+.+..+++.+.+.|..++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 334455666555555555555554433
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.08 E-value=27 Score=26.73 Aligned_cols=47 Identities=9% Similarity=0.006 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCC--CCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 412 GEWVAKHLQELEP--WSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 412 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+..+|..|.+.+. .....|...+..+...|++++|.++++.-.+.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4555555554432 2223455555555566666666666655554443
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.99 E-value=37 Score=27.75 Aligned_cols=51 Identities=14% Similarity=-0.032 Sum_probs=21.8
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCChhhHHHHhcc
Q 012101 131 SCQLFALEIGRQLHSLAVRLGLESNEFC--ESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 131 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
.++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3444555555555554444443333211 11233334445555554444443
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.19 E-value=38 Score=31.24 Aligned_cols=94 Identities=10% Similarity=-0.073 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC------CCHhhHHHHHHHHHhCCChhHHHHHHHHHHHc---CCCCCHHHHH--
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWEIDQ------PNVSSWTSMIVGYAANGLANEALDCFHYMRES---GIRPNHVTFV-- 329 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~-- 329 (471)
+...+.+.|.+.|++++|.+.|.++.. .-...+-..++.+...+++..+...+.+.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677777777777777777776653 22345556666677777777777777665432 2222222111
Q ss_pred HHHHHhccCCcHHHHHHHHHHhHHh
Q 012101 330 GVLSACVHGGKVQEGKHFFEMMKNV 354 (471)
Q Consensus 330 ~ll~~~~~~~~~~~a~~~~~~~~~~ 354 (471)
.-...+...+++..|-+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233456666666666555443
No 277
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.39 E-value=83 Score=30.67 Aligned_cols=361 Identities=11% Similarity=-0.072 Sum_probs=186.0
Q ss_pred HHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 55 ATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 55 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
+.-+..+++ .+++.....++.. + +.+...-.....+....|+..+|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~---~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELAR---REDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHH---TTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHh---CCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 333445555 6778888887766 3 3444445556777778888888888777776555 34566777788777766
Q ss_pred CCchH--HHHHHHHHHHhC-----------CCCCcc-hHHHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHH
Q 012101 135 FALEI--GRQLHSLAVRLG-----------LESNEF-CESGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGL 197 (471)
Q Consensus 135 ~~~~~--a~~~~~~~~~~~-----------~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~ 197 (471)
|.+.. ..+=++.+...| ++++.. ....++..+. +...+........ ++.. .+...+.-+
T Consensus 150 g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~~~rl 225 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTTG-ATDFTRQMAAVAFASV 225 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHSC-CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhccC-CChhhHHHHHHHHHHH
Confidence 65532 222233333322 111111 1122222221 2223333322221 1111 122223333
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 012101 198 SQDGRAKEAIDMFIGLKKCGFEPDDVTM----VSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCG 273 (471)
Q Consensus 198 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 273 (471)
.+ .+.+.|...+....+.+ ..+.... ..+.......+...++...+... .... .+.....-.+....+.|
T Consensus 226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA--IMRS--QSTSLIERRVRMALGTG 299 (618)
T ss_dssp HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH--HHTC--CCHHHHHHHHHHHHHHT
T ss_pred Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc--cccC--CChHHHHHHHHHHHHCC
Confidence 33 37899999998887543 2233322 23333344555355666666655 3332 33333444455556789
Q ss_pred ChHHHHHHHHhcCCCC---HhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHH
Q 012101 274 RMDLAYKVFWEIDQPN---VSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEM 350 (471)
Q Consensus 274 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 350 (471)
+++.|...|..|.... ....-=+..++...|+.++|..+|..+... . +|-.++.+ .+.|..-.
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~------- 365 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYE------- 365 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCC-------
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCC-------
Confidence 9999999999998632 222233455777889999999999998742 1 33333322 12221100
Q ss_pred hHHhcCCCCC-hh-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 351 MKNVYQIEPR-FA-----HYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 351 ~~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
+ ......+. .. .--.-+..+...|....|...+....-..+......+.......|....+.....+....+.
T Consensus 366 ~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~ 444 (618)
T 1qsa_A 366 L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDH 444 (618)
T ss_dssp C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTC
T ss_pred C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcc
Confidence 0 00000010 00 11123455778899888888777762123333334455555667777777655543322210
Q ss_pred ---CCCchHHHHHHHHHcCCChHHH
Q 012101 425 ---WSDGAYVVLSNIYASRGLWEEV 446 (471)
Q Consensus 425 ---~~~~~~~~l~~~~~~~g~~~~A 446 (471)
.-|..|..++.-+.+.-.++.+
T Consensus 445 ~~~~~P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 445 LEERFPLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp HHHHSCCTTHHHHHHHHTTSSSCHH
T ss_pred hhhhCCcchHHHHHHHHHHcCCCHH
Confidence 0122355555555555444443
No 278
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.93 E-value=25 Score=32.34 Aligned_cols=327 Identities=11% Similarity=0.125 Sum_probs=157.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcc--hHHHHHHHHH
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT--LPIVLKASCQLFALEIGRQLHSLAVRLGLESNEF--CESGFISLYS 167 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~ 167 (471)
.+...+..|+.+ +++.+.+.|..|+... ..+.+...+..|+.+-+..++ +.|..++.. .-.+.+...+
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAA 88 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHH
Confidence 444455667754 4555556676665432 234455566677766555444 456544432 1234556667
Q ss_pred hcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHcCcCCHHHH
Q 012101 168 KAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPD---DVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 168 ~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a 241 (471)
+.|+.+-+.-+++.-..++.. .++. +...+..|+.+-+..++ +.|..++ ....+ .+...+..|+.+-+
T Consensus 89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v 162 (437)
T 1n11_A 89 RIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALL----EKEASQACMTKKGFT-PLHVAAKYGKVRVA 162 (437)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCC-HHHHHHHcCCHHHH
Confidence 889998888888775544332 2233 33445556766555544 3443322 11222 23334456776655
Q ss_pred HHHHHHHHHhhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCChhHHHHHHHHH
Q 012101 242 LQVHKYVFQVKSKQKSDTL--MLNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGLANEALDCFHYM 316 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m 316 (471)
..+ .+.+..++.. .-.+.+...+..|+.+-+..+++.-..++. .-++. +...+..|+.+-+. .+
T Consensus 163 ~~L------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~L 231 (437)
T 1n11_A 163 ELL------LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVAR----SL 231 (437)
T ss_dssp HHH------HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHH----HH
T ss_pred HHH------HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHH----HH
Confidence 444 3444433321 112234455677888777777665544322 22222 33445667655444 34
Q ss_pred HHcCCCCCHH---HHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 012101 317 RESGIRPNHV---TFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFA--HYGCMVDLLGRAGLLEEARAMVEGM-PMK 390 (471)
Q Consensus 317 ~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 390 (471)
.+.|..++.. ..+. +...+..|..+-...+++ . |..++.. .-...+...++.|+.+-+.-+++.- .+.
T Consensus 232 l~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~----~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 305 (437)
T 1n11_A 232 LQYGGSANAESVQGVTP-LHLAAQEGHAEMVALLLS----K-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305 (437)
T ss_dssp HHTTCCTTCCCTTCCCH-HHHHHHTTCHHHHHHHHT----T-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred HHcCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHh----c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence 4555444432 2222 333345566554444433 2 3333221 0112334455678887777666653 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 012101 391 -ANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRA 451 (471)
Q Consensus 391 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 451 (471)
.+..-.+. +...+..|+.+-+..+++.-...+..+..-...|- .-++.|..+-+.-+++
T Consensus 306 ~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 306 ATTRMGYTP-LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CCCSSCCCH-HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCH-HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH
Confidence 12112222 33445667877666665543222222222222232 2334566654444444
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.07 E-value=37 Score=26.32 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 012101 393 VVIWGCLMGACEKFGNVKMGEWVAKHLQELEP 424 (471)
Q Consensus 393 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 424 (471)
...|......+-..|++.+|.++|+...+.+.
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455555555555666666666666555553
No 280
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.83 E-value=59 Score=28.39 Aligned_cols=169 Identities=7% Similarity=-0.016 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHH----HHHHHHHcCCCCCHHHHHHHHHHh
Q 012101 260 LMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALD----CFHYMRESGIRPNHVTFVGVLSAC 335 (471)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~ 335 (471)
..|.++..=|.+.+++++|.+++.. -...+.+.|+...|-+ +++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3566667778888999999887533 2344566787766555 455566678899988888888776
Q ss_pred ccCCcHH-HHHHHHHHhH---HhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 012101 336 VHGGKVQ-EGKHFFEMMK---NVYQ--IEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMKANVVIWGCLMGACEKF--- 406 (471)
Q Consensus 336 ~~~~~~~-~a~~~~~~~~---~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l~~~~~~~--- 406 (471)
.....-+ .=.++++++. .+.| -.-++.....+...|.+.|++.+|+..|- .+..-|...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCC
Confidence 5532111 1122222221 1111 12456777888889999999999988776 33222455666655555444
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhh
Q 012101 407 GNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMK 454 (471)
Q Consensus 407 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 454 (471)
|...++--+ ....+--|.-.|+...|.++++...
T Consensus 182 ~~~~e~dlf--------------~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 182 IEDSTVAEF--------------FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCHHHHHHH--------------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCcchHHHH--------------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 433332111 1122334556778888888877664
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=68.78 E-value=14 Score=30.27 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=9.0
Q ss_pred HHHHHhcCChhhHHHHhcc
Q 012101 163 ISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~ 181 (471)
+...+..|+.+-+..+++.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHcCCHHHHHHHHHc
Confidence 3344445555555544443
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=67.27 E-value=10 Score=31.86 Aligned_cols=91 Identities=8% Similarity=-0.064 Sum_probs=48.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCcch-------HHHHHHHHh--ccCCchHHHHHHHHHHHhC-------CCCCc
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLPDCYT-------LPIVLKASC--QLFALEIGRQLHSLAVRLG-------LESNE 156 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~-------~~~~~ 156 (471)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ ...+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777777777777766665555332 233333332 5677777777766544311 00010
Q ss_pred --chHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 157 --FCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 157 --~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
..-.+.+...+..|+.+-+.-+++.-.
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 011233444556677777777766543
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=67.13 E-value=46 Score=26.43 Aligned_cols=48 Identities=10% Similarity=0.026 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCC
Q 012101 258 DTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGL 305 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 305 (471)
+..+-...+.++.+.++.+....+...+..++...-...+.++.+.+.
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444333334444444444444444444444443
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.83 E-value=17 Score=31.30 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=32.4
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhcCCh
Q 012101 95 LYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC--ESGFISLYSKAGDF 172 (471)
Q Consensus 95 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~ 172 (471)
..+..|+.+- ++.+.+.|..++...-.+.+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.
T Consensus 37 ~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~~ 108 (285)
T 3kea_A 37 YAIADNNVRL----VCTLLNAGALKNLLENEFPLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSGNM 108 (285)
T ss_dssp HHHHTTCHHH----HHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHH----HHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 3344555433 33333444443333222344444555555544333 33344433221 11223333445555
Q ss_pred hhHHHHhcc
Q 012101 173 EKARKVFDE 181 (471)
Q Consensus 173 ~~a~~~~~~ 181 (471)
+-+.-+++.
T Consensus 109 ~~v~~Ll~~ 117 (285)
T 3kea_A 109 QTVKLFVKK 117 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555554444
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=65.32 E-value=84 Score=30.85 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=45.6
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC---------------C-HHHHHHHHHHHHhc-----C--CC
Q 012101 370 LLGRAGLLEEARAMVEGMPMKAN-VVIWGCLMGACEKFG---------------N-VKMGEWVAKHLQEL-----E--PW 425 (471)
Q Consensus 370 ~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~l~~~~~~~~---------------~-~~~a~~~~~~~~~~-----~--~~ 425 (471)
-+...|++++|..+|.-.+.... ....|.++.-....- + ...|.++.+..... . +.
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 45567888888888877752211 224444443322111 1 23444444443221 1 11
Q ss_pred CCchHHHHHHH-----HHcCCChHHHHHHHHHhh
Q 012101 426 SDGAYVVLSNI-----YASRGLWEEVERIRAVMK 454 (471)
Q Consensus 426 ~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~ 454 (471)
+..++..|+.. +.+.|+|++|++.++++.
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 22345544443 378899999999988864
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=64.87 E-value=25 Score=31.46 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGL--ANEALDCFHYMRESGIRPNHVTF 328 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~ 328 (471)
.+.++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+...+++..+...|+-+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 56788888999999999999999987642 233344444444333 35577788888877765544433
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.61 E-value=57 Score=26.28 Aligned_cols=53 Identities=9% Similarity=-0.009 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 012101 102 PKKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 102 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (471)
...+.++|..|...||--.. .-|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45666666666666554332 334445555556666666666666666555444
No 288
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.02 E-value=95 Score=30.49 Aligned_cols=81 Identities=7% Similarity=-0.021 Sum_probs=39.8
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHc---CCCh
Q 012101 127 VLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQ---DGRA 203 (471)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~~~~ 203 (471)
...++.-.|+++.|.+.+-.. ...+.+.+...+. ..|-+.....++..-...-...+..||..|.+ ..++
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~---~~gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~ 372 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLA---SLKLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDP 372 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHH---HTTC-----------------CHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHH---HcCCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCH
Confidence 445556678999998877643 1233333332222 23333321112111111112247778888875 4788
Q ss_pred hHHHHHHHHHH
Q 012101 204 KEAIDMFIGLK 214 (471)
Q Consensus 204 ~~a~~~~~~m~ 214 (471)
.+|+++|--+.
T Consensus 373 ~~Al~Y~~li~ 383 (661)
T 2qx5_A 373 RVAVEYLVLIT 383 (661)
T ss_dssp HHHHHHHHGGG
T ss_pred HHHHHHHHHHh
Confidence 89998887773
No 289
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=61.95 E-value=58 Score=25.80 Aligned_cols=146 Identities=14% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHH
Q 012101 162 FISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELA 241 (471)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 241 (471)
.+..+.+.++.+....+.+.+..++...-...+.++...++.+.. ..+..+.. .++...-...+.++.+.++.+..
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH
Confidence 333334444333333344444444444444444444544543322 22222222 35555555555555555554332
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 242 LQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
..+. .+ . ..++..+-...+.++.+.+..+....+...+..++...-...+.++.+.|. .++...+..+..
T Consensus 110 ~~L~-~~--l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 110 EPLI-KA--L---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHH-HH--T---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHH-HH--H---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 2222 22 2 234555566666666666665544444455555666655666666666654 334444444443
No 290
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.90 E-value=1.6e+02 Score=30.43 Aligned_cols=249 Identities=10% Similarity=-0.045 Sum_probs=132.9
Q ss_pred HHhcCChhhHHHHhccCCCC----Ccc--hHHHHHHHHHcCCChhHHHHHHHHHHHCCC--C-----CCHH--HHHHHHH
Q 012101 166 YSKAGDFEKARKVFDENPER----KLG--SWNAIIAGLSQDGRAKEAIDMFIGLKKCGF--E-----PDDV--TMVSVTS 230 (471)
Q Consensus 166 ~~~~g~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~-----p~~~--~~~~li~ 230 (471)
....|+.+++..+++.-... +.. .-..+.-+....|..+++..++.......- . +... ....+..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777788887765431 211 223344456666766778887777654321 0 1111 1122333
Q ss_pred HHcCcCCHHHHHHHHHHHHHhhcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhcCC-CCHhh--HHHHHHHHHhCCC
Q 012101 231 ACGSLGDLELALQVHKYVFQVKSKQKSDT--LMLNSLIDMYGKCGRMDLAYKVFWEIDQ-PNVSS--WTSMIVGYAANGL 305 (471)
Q Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~~~ 305 (471)
++...++. ++.+.+..+ +.... +.. ..--++.-.+.-.|+-+....++..+.+ .+... .-.+.-++...|+
T Consensus 464 a~~GS~~e-ev~e~L~~~--L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEV--LYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCH-HHHHHHHHH--HHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCH-HHHHHHHHH--HhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 34444554 444444444 22221 111 1122344455677887777777776532 22222 2333344557899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 012101 306 ANEALDCFHYMRESGIRPNHVTFV--GVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAM 383 (471)
Q Consensus 306 ~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 383 (471)
.+.+..+++.+... -.|....-. .+.-+|+..|+.....++++.+... ...++.....+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999888864 133222222 3345678889988888899988653 223333333333445556777777777
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 012101 384 VEGM--PMKANVVIWGCLMGACEKFGNV-KMGEWVAKHLQE 421 (471)
Q Consensus 384 ~~~m--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 421 (471)
++.+ ...|....-..+.-+....|+. .++...+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7766 2334444333344444444443 566667776653
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=59.13 E-value=31 Score=27.25 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=8.4
Q ss_pred HhcCChhhHHHHhcc
Q 012101 167 SKAGDFEKARKVFDE 181 (471)
Q Consensus 167 ~~~g~~~~a~~~~~~ 181 (471)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445566666555544
No 292
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.34 E-value=32 Score=27.98 Aligned_cols=15 Identities=0% Similarity=-0.130 Sum_probs=6.4
Q ss_pred HHhCCCchHHHHHHH
Q 012101 96 YTRLEAPKKALDIYI 110 (471)
Q Consensus 96 ~~~~g~~~~A~~~~~ 110 (471)
.++.|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334444444444443
No 293
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=55.40 E-value=91 Score=26.01 Aligned_cols=41 Identities=2% Similarity=-0.012 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcCCCCChh--HHHHHHHHHHhcCChHHHHHHHH
Q 012101 241 ALQVHKYVFQVKSKQKSDTL--MLNSLIDMYGKCGRMDLAYKVFW 283 (471)
Q Consensus 241 a~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~ 283 (471)
..++.+.+ .+.|..++.. .-.+.+...++.|+.+-+..+++
T Consensus 198 ~~~i~~~L--l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 198 VEAITHLL--LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHH--HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH--HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444444 4555444322 11233445556677777777776
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.14 E-value=86 Score=29.64 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhCCCchHHHHHHHHH
Q 012101 87 FHWNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 87 ~~~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
..+|.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 34666666666666666666666655
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.63 E-value=1.1e+02 Score=26.65 Aligned_cols=67 Identities=9% Similarity=-0.016 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 012101 376 LLEEARAMVEGM---PMKANV--VIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIR 450 (471)
Q Consensus 376 ~~~~A~~~~~~m---~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 450 (471)
+..+..++---+ +++|.. -++...+..+.+.+++..|..+.+++.+++|... ..++|.+++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil 250 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIK 250 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHH
Confidence 334444443333 667643 4778888999999999999999999999998432 345566666
Q ss_pred HHhhcC
Q 012101 451 AVMKHR 456 (471)
Q Consensus 451 ~~m~~~ 456 (471)
..-.+.
T Consensus 251 ~~ce~~ 256 (325)
T 3mv2_A 251 NKADSM 256 (325)
T ss_dssp HHHHTS
T ss_pred HHHhcC
Confidence 655443
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.17 E-value=44 Score=27.81 Aligned_cols=23 Identities=9% Similarity=-0.024 Sum_probs=19.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHH
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSR 114 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~ 114 (471)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 57888899999999999988754
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=51.83 E-value=31 Score=28.22 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=12.3
Q ss_pred HHHhccCCcHHHHHHHHHHhH
Q 012101 332 LSACVHGGKVQEGKHFFEMMK 352 (471)
Q Consensus 332 l~~~~~~~~~~~a~~~~~~~~ 352 (471)
+......|+.+.+.++.+.+.
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344455666666666666653
No 298
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=50.54 E-value=2.2e+02 Score=29.28 Aligned_cols=26 Identities=4% Similarity=-0.056 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCC
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPE 184 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 184 (471)
-..++.+++...+.+...++++....
T Consensus 761 k~~ll~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 761 ADKLRSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhC
Confidence 34455555555555555555554443
No 299
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.12 E-value=57 Score=28.94 Aligned_cols=17 Identities=0% Similarity=-0.312 Sum_probs=8.9
Q ss_pred HHHhcCChHHHHHHHHh
Q 012101 268 MYGKCGRMDLAYKVFWE 284 (471)
Q Consensus 268 ~~~~~g~~~~A~~~~~~ 284 (471)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445565555555543
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.51 E-value=70 Score=25.09 Aligned_cols=13 Identities=0% Similarity=-0.394 Sum_probs=7.0
Q ss_pred CchHHHHHHhccc
Q 012101 68 NQIYAHIIRTHML 80 (471)
Q Consensus 68 ~~~~~a~~~~~~~ 80 (471)
|+.+....+++.-
T Consensus 16 g~~~~v~~ll~~~ 28 (201)
T 3hra_A 16 RDTKKVKEILQDT 28 (201)
T ss_dssp TCHHHHHHHHTCT
T ss_pred ccHHHHHHHHHcC
Confidence 5555555555543
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=46.68 E-value=99 Score=23.93 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCc
Q 012101 103 KKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNE 156 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 156 (471)
+.+.++|..|...||--.. ..|......+-..|++..|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3467778888777765443 34555566667777888888888877776655543
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=46.17 E-value=40 Score=27.43 Aligned_cols=58 Identities=5% Similarity=-0.035 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHHhhcCCC
Q 012101 400 MGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAVMKHRNL 458 (471)
Q Consensus 400 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 458 (471)
+...+..|+.+-+..+++.-......+..-. .-+..-.+.|+.+-+.-+++...+.++
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 3444566777666655554322221111111 223344556677666666665555443
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.46 E-value=66 Score=23.67 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCC
Q 012101 160 SGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGR--AKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 220 (471)
..++.-|...|+.++|.+.++++..|.-. ....+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45677777788888888888887655222 34444455555432 355667777777666443
No 304
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=43.65 E-value=80 Score=25.51 Aligned_cols=25 Identities=8% Similarity=-0.084 Sum_probs=13.2
Q ss_pred HHHHcCcCCHHHHHHHHHHHHHhhcCC
Q 012101 229 TSACGSLGDLELALQVHKYVFQVKSKQ 255 (471)
Q Consensus 229 i~~~~~~~~~~~a~~~~~~~~~~~~~~ 255 (471)
+...+..|+.+.+..+++.+ .+.|.
T Consensus 158 L~~A~~~~~~~~~~~i~~~L--l~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLL--LSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHcCChHHHHHHHHHH--HhcCC
Confidence 33344556666665555555 44443
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.89 E-value=79 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 359 PRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 359 p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
++.......+..+.+.|+.++|.++|-+.
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 44444555666666777777777666544
No 306
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.77 E-value=1.1e+02 Score=23.30 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGL--ANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 325 (471)
.+.++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677788888888888888888876522 223333334443322 34566777777766655433
No 307
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.86 E-value=93 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=9.5
Q ss_pred HHHHHhcCChhhHHHHhcc
Q 012101 163 ISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~ 181 (471)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455555555555544
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=41.86 E-value=1.2e+02 Score=24.24 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=27.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 128 LKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 128 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
+...++.|+.+....+++.-...-..++..-+ +.+...+..|+.+-+..+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g 63 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLG 63 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCC-CHHHHHHHcCcHHHHHHHHHhC
Confidence 44556667777766666542211111222222 2344456667777776666553
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.54 E-value=78 Score=28.00 Aligned_cols=178 Identities=11% Similarity=-0.042 Sum_probs=78.0
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--------------------H
Q 012101 267 DMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIRPNH--------------------V 326 (471)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--------------------~ 326 (471)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.....|..|+. .
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK 137 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEES
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCC
Confidence 34445566666665555544322211112233344566666666666654444444433 1
Q ss_pred HHHHHHHHhccCC--cHHHHHHHHHHhHHhcCCCCChhH--HHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-CCHHH
Q 012101 327 TFVGVLSACVHGG--KVQEGKHFFEMMKNVYQIEPRFAH--YGCMVDLLGRAGLLEEARAMVEGM-P-----MK-ANVVI 395 (471)
Q Consensus 327 ~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m-~-----~~-p~~~~ 395 (471)
-.+.|.. .+..| ..+-+..+++. |..++... -.+.+...+..|+.+-+..+++.. . +. .|..-
T Consensus 138 g~t~L~~-A~~~g~~~~~~v~~Ll~~-----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g 211 (364)
T 3ljn_A 138 GQTALHW-CVGLGPEYLEMIKILVQL-----GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQG 211 (364)
T ss_dssp CCCHHHH-HHHSCGGGHHHHHHHHHH-----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTC
T ss_pred CCCHHHH-HHHcCCchHHHHHHHHHc-----CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCC
Confidence 1222333 33445 44433333332 33333211 112334445677877777777653 1 11 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLWEEVERIRAV 452 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 452 (471)
.+. +...+..|+.+-+..+++.-...+..+..-...| ..-++.|..+-+.-+++.
T Consensus 212 ~t~-L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 212 NSH-LHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCT-THHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CcH-HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 222 2233456776655555543222222222222222 223345666666666665
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.02 E-value=1.5e+02 Score=24.32 Aligned_cols=52 Identities=4% Similarity=0.041 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 012101 103 KKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (471)
+.+.++|..|...||--.. ..|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4666777777777665443 335555566666777777777777777666555
No 311
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.90 E-value=1.5e+02 Score=24.31 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 392 NVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
-...|......+-..|++.+|.++|+...+.+..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4556666667777777777777777777776644
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=39.69 E-value=35 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=27.9
Q ss_pred CChhhHHHHhccCCCCCcchHHHHHHHHHcCCChhHHH
Q 012101 170 GDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAKEAI 207 (471)
Q Consensus 170 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 207 (471)
...++|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677888888888888888888888887666655543
No 313
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=39.39 E-value=99 Score=25.86 Aligned_cols=90 Identities=10% Similarity=-0.044 Sum_probs=48.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCC-------CcchHHHHHHHHh--ccCCchHHHHHHHHHHHhC---------CC-
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLP-------DCYTLPIVLKASC--QLFALEIGRQLHSLAVRLG---------LE- 153 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 153 (471)
+...++.|+.+.+..+++...+.+... |..-.+.|..++. +.|+.+-+..+++.....+ ..
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence 333456777777777777766555332 2233444444443 3577777776666543211 11
Q ss_pred CCcchHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 154 SNEFCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
.|..-++ .+...+..|+.+-+..+++.-.
T Consensus 97 ~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 97 SYYKGQT-ALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp TTTTTCC-HHHHHHHTTCHHHHHHHHHTTC
T ss_pred ccCCCCC-HHHHHHHcCCHHHHHHHHHCCC
Confidence 1222223 3444566778877777776643
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.98 E-value=3.2e+02 Score=28.28 Aligned_cols=51 Identities=2% Similarity=-0.158 Sum_probs=30.4
Q ss_pred HHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 012101 331 VLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 331 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 387 (471)
++..|...|..+-+.++..-. +.+...--.+..+|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555566666666555433222 223322234556777888888888888877
No 315
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.51 E-value=74 Score=27.07 Aligned_cols=21 Identities=0% Similarity=-0.039 Sum_probs=11.5
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 012101 265 LIDMYGKCGRMDLAYKVFWEI 285 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~ 285 (471)
.+...+..|+.+-+..+++.-
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCC
Confidence 344445566666666655543
No 316
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.79 E-value=37 Score=21.01 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=22.3
Q ss_pred chHHHHHHHHHHHCCCCCCcchHHHHHHHH-hcc
Q 012101 102 PKKALDIYIFMSRAGVLPDCYTLPIVLKAS-CQL 134 (471)
Q Consensus 102 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~ 134 (471)
.++|.+.|.+|++..-.+..-||...++.+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367778888776654445667788888777 444
No 317
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=37.75 E-value=43 Score=25.06 Aligned_cols=11 Identities=0% Similarity=-0.058 Sum_probs=4.2
Q ss_pred CCCchHHHHHH
Q 012101 99 LEAPKKALDIY 109 (471)
Q Consensus 99 ~g~~~~A~~~~ 109 (471)
.|+.+.+..++
T Consensus 12 ~g~~~~v~~ll 22 (156)
T 1bd8_A 12 RGDVQEVRRLL 22 (156)
T ss_dssp HTCHHHHHHHH
T ss_pred hCCHHHHHHHH
Confidence 34433333333
No 318
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.37 E-value=47 Score=20.56 Aligned_cols=49 Identities=8% Similarity=-0.009 Sum_probs=27.5
Q ss_pred chHHHHHHhcccCCCCchhhHHHHHHHH-HhCCCchHHHHHHHHHHHCCCCCC
Q 012101 69 QIYAHIIRTHMLHSYSAAFHWNNIIRLY-TRLEAPKKALDIYIFMSRAGVLPD 120 (471)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~ 120 (471)
-.++++..+.+|- |+.. -..+-..+ ...|+.+.|++.+-.|...+..|+
T Consensus 8 ~~ee~l~~L~emF--P~ld-~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 8 CSEEDLKAIQDMF--PNMD-QEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp SCHHHHHHHHHHC--SSSC-HHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCHHHHHHHHHHC--CCCC-HHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCC
Confidence 3455666666653 3322 23333333 345678888888877766655554
No 319
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=37.35 E-value=1.6e+02 Score=23.61 Aligned_cols=148 Identities=10% Similarity=-0.038 Sum_probs=78.3
Q ss_pred cCchHHHHHHhcccCCC---CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCC----CCCcchHHHHHHHHhccCCchH
Q 012101 67 LNQIYAHIIRTHMLHSY---SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGV----LPDCYTLPIVLKASCQLFALEI 139 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~ 139 (471)
.|+.+....+++.-+.. .|..-++ .+...+..|+.+-+..+++.-..... ..|..-.+ .+...+..|+.+-
T Consensus 13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~ 90 (232)
T 2rfa_A 13 ENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT-ALHIAVINQNVNL 90 (232)
T ss_dssp TTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCC-HHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcC-HHHHHHHcCCHHH
Confidence 45666666666653321 2222233 34444566776555555543221100 01112222 3344455566554
Q ss_pred HHHHHHHHHHhCCCCCcc---------------hHHHHHHHHHhcCChhhHHHHhccCCCCCcc--hHHHHHHHHHcCCC
Q 012101 140 GRQLHSLAVRLGLESNEF---------------CESGFISLYSKAGDFEKARKVFDENPERKLG--SWNAIIAGLSQDGR 202 (471)
Q Consensus 140 a~~~~~~~~~~~~~~~~~---------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~ 202 (471)
.+.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-...+.. .-.+.+...+..|+
T Consensus 91 ----v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~ 166 (232)
T 2rfa_A 91 ----VRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166 (232)
T ss_dssp ----HHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC
T ss_pred ----HHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 44445556555442 1234556667788888888888764433322 11234455567788
Q ss_pred hhHHHHHHHHHHHCCCCC
Q 012101 203 AKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 203 ~~~a~~~~~~m~~~g~~p 220 (471)
.+-+..+++.+.+.|..+
T Consensus 167 ~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 167 KTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHHHHHHHHHHHTTCSC
T ss_pred hHHHHHHHHHHHhcCCch
Confidence 888888888888877544
No 320
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=37.20 E-value=89 Score=21.63 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 012101 309 ALDCFHYMRESGIRPNHVTFVGVLSACV 336 (471)
Q Consensus 309 a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 336 (471)
|.++.+++..-|+.|+..+...++..|.
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~ 55 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCV 55 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4444444444555555544444444443
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.76 E-value=1.2e+02 Score=22.17 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCH---hhHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCH
Q 012101 262 LNSLIDMYGKCGRMDLAYKVFWEIDQPNV---SSWTSMIVGYAANGL--ANEALDCFHYMRESGIRPNH 325 (471)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~ 325 (471)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45677788888888888888888876522 223333334444332 35667777777776655443
No 322
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.72 E-value=1.9e+02 Score=24.23 Aligned_cols=17 Identities=6% Similarity=-0.183 Sum_probs=6.5
Q ss_pred ChhHHHHHHHHHHhcCC
Q 012101 258 DTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 258 ~~~~~~~l~~~~~~~g~ 274 (471)
+..+-...+.++...|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 34444444444444444
No 323
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=36.67 E-value=1.3e+02 Score=22.47 Aligned_cols=49 Identities=2% Similarity=-0.069 Sum_probs=22.2
Q ss_pred cCchHHHHHHhcccCCC---CchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 012101 67 LNQIYAHIIRTHMLHSY---SAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPD 120 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 120 (471)
.|+.+....+++.-+.. .+...++ .+...+..|+. ++++.+.+.|..++
T Consensus 18 ~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~g~~~~ 69 (165)
T 3twr_A 18 AGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRV----SVVEYLLQHGADVH 69 (165)
T ss_dssp HTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTT
T ss_pred hCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChH----HHHHHHHhcCCCCC
Confidence 35666666666543321 1111122 33333455553 44455555565444
No 324
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.48 E-value=98 Score=23.22 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAG 116 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g 116 (471)
++..+...+..-.|.++++.+.+.+
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 3333333333444444444444443
No 325
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=36.22 E-value=58 Score=24.85 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=36.7
Q ss_pred HHHHHHHHhcCChhhHHHHhccCCCCCcc---hHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCC
Q 012101 160 SGFISLYSKAGDFEKARKVFDENPERKLG---SWNAIIAGLSQDGR--AKEAIDMFIGLKKCGFEP 220 (471)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p 220 (471)
+.++.-|...|+.++|.+.++++..|.-. ...++..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45667777778888888888777655222 34444445554322 345666777776666443
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.48 E-value=1.6e+02 Score=23.56 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=32.0
Q ss_pred chHHHHHHhcccCCCCchhh-------HHHHHHHHHhCCCchHHHHHHHHHHHC
Q 012101 69 QIYAHIIRTHMLHSYSAAFH-------WNNIIRLYTRLEAPKKALDIYIFMSRA 115 (471)
Q Consensus 69 ~~~~a~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~ 115 (471)
.+++|+.+++.+....+... --..+..|.+.|.+++|.++|++.-..
T Consensus 93 PLESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 93 PLESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 46889999998876544111 113456788899999999999886443
No 327
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.67 E-value=25 Score=21.78 Aligned_cols=23 Identities=4% Similarity=0.044 Sum_probs=16.3
Q ss_pred CCCchHHHHHHHHHHHCC-CCCCc
Q 012101 99 LEAPKKALDIYIFMSRAG-VLPDC 121 (471)
Q Consensus 99 ~g~~~~A~~~~~~m~~~g-~~p~~ 121 (471)
.-+++.|...|.++...| ++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 447888888888887654 55554
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.82 E-value=1e+02 Score=25.46 Aligned_cols=78 Identities=9% Similarity=-0.050 Sum_probs=42.0
Q ss_pred hCCCchHHHHHHHHHHHCC---------CCC-CcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcch---------
Q 012101 98 RLEAPKKALDIYIFMSRAG---------VLP-DCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFC--------- 158 (471)
Q Consensus 98 ~~g~~~~A~~~~~~m~~~g---------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------- 158 (471)
+.|+.+-+..+++.-...+ +.. |..-. +.+...+..|+.+-+ +.+++.|..++...
T Consensus 58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~-t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~ 132 (260)
T 3jxi_A 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQ-TALHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKD 132 (260)
T ss_dssp BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESB-CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSC
T ss_pred hcCCHHHHHHHHHhcccccchHhhhcccccccccCCC-CHHHHHHHcCCHHHH----HHHHhCCCCcCccccccccCccc
Confidence 5677776666666543311 111 11222 234444556666544 44455676655442
Q ss_pred -------HHHHHHHHHhcCChhhHHHHhc
Q 012101 159 -------ESGFISLYSKAGDFEKARKVFD 180 (471)
Q Consensus 159 -------~~~ll~~~~~~g~~~~a~~~~~ 180 (471)
-.+.+...+..|+.+-+..+++
T Consensus 133 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 133 EGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2345556677788887777777
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.46 E-value=88 Score=24.09 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=32.9
Q ss_pred HHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHh--CCCCCcchHHHHHHHHHhcCCh
Q 012101 112 MSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRL--GLESNEFCESGFISLYSKAGDF 172 (471)
Q Consensus 112 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~ 172 (471)
+.+.|++++. --..++..+...+..-.|.++++.+.+. +...+..|--.-++.+...|-+
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455666543 3344555565656666777777777665 4444443332344566666644
No 330
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.34 E-value=1.5e+02 Score=24.99 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHhc
Q 012101 53 IVATQLSKCTN 63 (471)
Q Consensus 53 ~~~~ll~~~~~ 63 (471)
.....+...+.
T Consensus 14 ~~~~~lH~Aa~ 24 (285)
T 3d9h_A 14 LVPRGSHMASM 24 (285)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 33444444445
No 331
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.97 E-value=1.1e+02 Score=20.01 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=33.8
Q ss_pred HHHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh
Q 012101 111 FMSRAGVLPDCYTLPIVLKASCQLF-ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDF 172 (471)
Q Consensus 111 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 172 (471)
.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+.+.|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 3556666655433 34455555543 4556777777776665444544444455555555543
No 332
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.93 E-value=2.9e+02 Score=25.00 Aligned_cols=219 Identities=11% Similarity=0.026 Sum_probs=98.2
Q ss_pred HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhcCC------CCHhhHH---
Q 012101 227 SVTSACGSLGDLELALQVHKYVFQVKSKQKSD---TLMLNSLIDMYGKCGRMDLAYKVFWEIDQ------PNVSSWT--- 294 (471)
Q Consensus 227 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~--- 294 (471)
.++..|...|++.+|.+++..+...-...... ..++..-+..|...+++.++...+..... +++..-.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 45566666677777766666652211111111 22344455566666776666666654421 2221111
Q ss_pred -HHHHHHH-hCCChhHHHHHHHHHHHc-C--CCC---CHHHHHHHHHHhccCCcHHHHHHHH-HHhHHhcCCCCChhHHH
Q 012101 295 -SMIVGYA-ANGLANEALDCFHYMRES-G--IRP---NHVTFVGVLSACVHGGKVQEGKHFF-EMMKNVYQIEPRFAHYG 365 (471)
Q Consensus 295 -~li~~~~-~~~~~~~a~~~~~~m~~~-~--~~p---~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~ 365 (471)
.-...+. ..+++..|...|-+..+. . ..| +...|..+.. ..... ..+...++ ......+ ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~-r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQ-SDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTC-GGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCC-HHHHHHHhcccccccc-CCccHHHHH
Confidence 1122334 567777777666554321 0 011 1223333222 22222 22222222 1211111 235555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHcCCCh
Q 012101 366 CMVDLLGRAGLLEEARAMVEGM--PMKANVVIWGCLMGACEKFGNVKMGEWVAKHLQELEPWSDGAYVVLSNIYASRGLW 443 (471)
Q Consensus 366 ~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 443 (471)
.++.+| ..+++.+..++++.. .+..|......+ ..+.+ .--...+.++ ..|-....+..+...+.- ..
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s~ 330 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNLCRI--IEPYSRVQVAHVAESIQL--PM 330 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHHHHH--HTTCSEEEHHHHHHHHTC--CH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHHHHH--hHhhceeeHHHHHHHHCc--CH
Confidence 565554 456777777777665 233444321111 00000 0001111111 234344456666666543 57
Q ss_pred HHHHHHHHHhhcCCC
Q 012101 444 EEVERIRAVMKHRNL 458 (471)
Q Consensus 444 ~~A~~~~~~m~~~~~ 458 (471)
++++..+-+|...|.
T Consensus 331 ~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 331 PQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCC
Confidence 888888888877664
No 333
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=31.88 E-value=84 Score=20.67 Aligned_cols=38 Identities=5% Similarity=0.029 Sum_probs=24.1
Q ss_pred HHhcccCC-CCchhhHHHHHHHHHhCCCchHHHHHHHHH
Q 012101 75 IRTHMLHS-YSAAFHWNNIIRLYTRLEAPKKALDIYIFM 112 (471)
Q Consensus 75 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 112 (471)
.++.++|. +|++.+|+-+...+-+.--..++..+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45566664 577778887777666555555666655554
No 334
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.48 E-value=1.3e+02 Score=28.39 Aligned_cols=63 Identities=11% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCCh--hHHH-HHHHHHHhcCCHHHHHHHHHhC
Q 012101 325 HVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRF--AHYG-CMVDLLGRAGLLEEARAMVEGM 387 (471)
Q Consensus 325 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m 387 (471)
...++.+++.|...+.+++|..+..+..--..-.++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567888888999999999999998873100001111 1221 2345566788898998887775
No 335
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.28 E-value=1.9e+02 Score=22.92 Aligned_cols=14 Identities=0% Similarity=-0.026 Sum_probs=6.7
Q ss_pred HhcCChhhHHHHhc
Q 012101 167 SKAGDFEKARKVFD 180 (471)
Q Consensus 167 ~~~g~~~~a~~~~~ 180 (471)
+..|+.+-+..+++
T Consensus 100 ~~~~~~~~~~~Ll~ 113 (223)
T 2f8y_A 100 ARLAVEGMLEDLIN 113 (223)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCcHHHHHHHHH
Confidence 44455554444444
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.97 E-value=96 Score=23.45 Aligned_cols=60 Identities=5% Similarity=-0.067 Sum_probs=27.0
Q ss_pred HHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCCh
Q 012101 112 MSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDF 172 (471)
Q Consensus 112 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 172 (471)
+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 44455543322 2233444444444556666666665554433433333344555555543
No 337
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.79 E-value=1.8e+02 Score=22.17 Aligned_cols=52 Identities=8% Similarity=-0.058 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHCCCCCCc-chHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 012101 103 KKALDIYIFMSRAGVLPDC-YTLPIVLKASCQLFALEIGRQLHSLAVRLGLES 154 (471)
Q Consensus 103 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 154 (471)
+.+.++|..|...||--.. .-|......+...|++.+|.++|+.-++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3366777777666655443 334555555666677777777777766655444
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.34 E-value=70 Score=22.09 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=19.8
Q ss_pred ChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhH
Q 012101 274 RMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANE 308 (471)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (471)
+.++|.++++.+.+.+..+|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 45556666666666555666666666654454433
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.67 E-value=77 Score=23.27 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccC
Q 012101 91 NIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLF 135 (471)
Q Consensus 91 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 135 (471)
.++..+...+.+-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556666666666666554445445444444444444
No 340
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.63 E-value=2.5e+02 Score=23.45 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=8.4
Q ss_pred CCCHhhHHHHHHHHHhCCC
Q 012101 287 QPNVSSWTSMIVGYAANGL 305 (471)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~ 305 (471)
.++..+-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444443
No 341
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.31 E-value=45 Score=24.94 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=49.6
Q ss_pred cCchHHHHHHhcccCC---CCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcch--HHHHHHHHhccCCchHHH
Q 012101 67 LNQIYAHIIRTHMLHS---YSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYT--LPIVLKASCQLFALEIGR 141 (471)
Q Consensus 67 ~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~ 141 (471)
.|+.+....+++..+. ..+...++.+ .. +..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+
T Consensus 12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v- 84 (156)
T 1bd8_A 12 RGDVQEVRRLLHRELVHPDALNRFGKTAL-QV-MMFGSTA----IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL- 84 (156)
T ss_dssp HTCHHHHHHHHHTTCCCTTCCCTTSCCHH-HH-SCTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH-
T ss_pred hCCHHHHHHHHHhhCcCccccCCCCCcHH-HH-HHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH-
Confidence 4677778777776211 1232333333 33 6667654 4444445565544321 11233334444555433
Q ss_pred HHHHHHHHhCCCCCcch--HHHHHHHHHhcCChhhHHHHhcc
Q 012101 142 QLHSLAVRLGLESNEFC--ESGFISLYSKAGDFEKARKVFDE 181 (471)
Q Consensus 142 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~ 181 (471)
+.+.+.|..++... -.+.+...+..|+.+-+.-+++.
T Consensus 85 ---~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 85 ---KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp ---HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred ---HHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 33444554443321 12233444556666666666555
No 342
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.16 E-value=91 Score=25.33 Aligned_cols=54 Identities=7% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCchHH--------HHHHHHHcCCChHHHHHHHHHhhcCCCccCC
Q 012101 409 VKMGEWVAKHLQELEPWSDGAYV--------VLSNIYASRGLWEEVERIRAVMKHRNLAKIP 462 (471)
Q Consensus 409 ~~~a~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 462 (471)
.+.|..+|+.+.+-.+.+..... ..+-+|.+.|.+++|.+++++.-.....+.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~k 149 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQK 149 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchH
No 343
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.98 E-value=1.3e+02 Score=24.70 Aligned_cols=88 Identities=3% Similarity=-0.074 Sum_probs=45.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCc-------chHHHHHHHHhcc---CCchHHHHHHHHHHHhCCCC--------
Q 012101 93 IRLYTRLEAPKKALDIYIFMSRAGVLPDC-------YTLPIVLKASCQL---FALEIGRQLHSLAVRLGLES-------- 154 (471)
Q Consensus 93 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~-------- 154 (471)
+...++.|+.+....+++.+.+.|..++. .-.+.|. ..+.. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~-~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLM-KAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHH-HHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHH-HHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 34445667777766677766666654443 2223333 33333 67766666666544432111
Q ss_pred --CcchHHHHHHHHHhcCChhhHHHHhccC
Q 012101 155 --NEFCESGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 155 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
|..- .+.+...+..|+.+-+..+++.-
T Consensus 85 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 85 DEFYQG-HSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp STTTTT-CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccccC-CCHHHHHHHcCCHHHHHHHHHcC
Confidence 1112 22334445666666666666553
No 344
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.96 E-value=35 Score=28.43 Aligned_cols=54 Identities=7% Similarity=-0.219 Sum_probs=34.3
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCc-------chHHHHHHHHHhc---CChhhHHHHhcc
Q 012101 127 VLKASCQLFALEIGRQLHSLAVRLGLESNE-------FCESGFISLYSKA---GDFEKARKVFDE 181 (471)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~---g~~~~a~~~~~~ 181 (471)
.+...++.|+.+.+..+++.+.+.|..++. .-.+ .+...+.. |+.+-+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t-~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKT-CLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBC-HHHHHHHTCBTTBCTTHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCC-HHHHHHHccccchHHHHHHHHhc
Confidence 345566778898888888888888866554 2233 33344444 666666666654
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=27.69 E-value=71 Score=23.82 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=19.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHHHHHHHHhcc
Q 012101 92 IIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLPIVLKASCQL 134 (471)
Q Consensus 92 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 134 (471)
++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~ 61 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADA 61 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 4444444444455555555555544444444433333333333
No 346
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.66 E-value=1e+02 Score=23.09 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=36.0
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH
Q 012101 211 IGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMD 276 (471)
Q Consensus 211 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 276 (471)
+.+.+.|++++..-. .++..+...+..-.|.++++.+ .+.+...+..|.-.-++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l--~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKAL--EGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHH--GGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHH--HHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345566766655432 3334443445555677777777 55555556655555666676666543
No 347
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=27.36 E-value=1.9e+02 Score=21.49 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=25.6
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCCcchH--HHHHHHHHhcCChhhHHHHhccC
Q 012101 127 VLKASCQLFALEIGRQLHSLAVRLGLESNEFCE--SGFISLYSKAGDFEKARKVFDEN 182 (471)
Q Consensus 127 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~g~~~~a~~~~~~~ 182 (471)
.+...+..|+.+ +++.+.+.|..++.... .+.+...+..|+.+-+.-+++.-
T Consensus 45 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 98 (165)
T 3twr_A 45 PLHFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98 (165)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCC
Confidence 344444555544 34444455655443321 23344455666766666666543
No 348
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.35 E-value=1.4e+02 Score=21.93 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCC
Q 012101 136 ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGD 171 (471)
Q Consensus 136 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 171 (471)
..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 344555555555554433333332223444444443
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.97 E-value=2.4e+02 Score=22.53 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHHHHH---cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcC
Q 012101 191 NAIIAGLS---QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGS 234 (471)
Q Consensus 191 ~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 234 (471)
..+|+++. +.++++.|+-.+.+|.+.|..|.-..-..++-+.-.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34555554 458899999999999999877776666666655533
No 350
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=26.81 E-value=2e+02 Score=21.59 Aligned_cols=6 Identities=17% Similarity=0.113 Sum_probs=2.4
Q ss_pred HhCCCc
Q 012101 97 TRLEAP 102 (471)
Q Consensus 97 ~~~g~~ 102 (471)
++.|+.
T Consensus 22 ~~~g~~ 27 (169)
T 2y1l_E 22 ARAGRD 27 (169)
T ss_dssp HHHTCH
T ss_pred HHcCCH
Confidence 334443
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=26.22 E-value=4e+02 Score=24.78 Aligned_cols=143 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred CcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCHhhHHHHHHHHHhCCChhHHH
Q 012101 234 SLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQ---PNVSSWTSMIVGYAANGLANEAL 310 (471)
Q Consensus 234 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 310 (471)
...+.+.|.++-.+. |.+--...|..-.+.+...|++++|.++--.-.+ .+..|.+.+-..-...|+..-.+
T Consensus 341 ~l~n~~lA~~lA~R~-----~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL 415 (494)
T 1bpo_A 341 VLQNPDLALRMAVRN-----NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLL 415 (494)
T ss_dssp TTCCHHHHHHHHHHT-----TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHH
T ss_pred ccCCHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHH
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGMPMK 390 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 390 (471)
.+|..+.+.| +.+..--..+++.-...|+.+-.++.+.+= .+..+...-..+ +..+..-|+.+|.+.+..
T Consensus 416 ~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e~----KL~~SEeLGDlv-----k~~d~~LAl~IY~~a~~~ 485 (494)
T 1bpo_A 416 QYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKED----KLECSEELGDLV-----KSVDPTLALSVYLRANVP 485 (494)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHT----CSCCCHHHHHHH-----HHHCSHHHHHHHHHHCCC
T ss_pred HHHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhcC----CccccHHhHhhh-----hhcCHHHHHHHHHHcCCc
Q ss_pred C
Q 012101 391 A 391 (471)
Q Consensus 391 p 391 (471)
.
T Consensus 486 ~ 486 (494)
T 1bpo_A 486 N 486 (494)
T ss_dssp C
T ss_pred H
No 352
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=25.75 E-value=1.9e+02 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=7.8
Q ss_pred HHHhcCChhhHHHHhcc
Q 012101 165 LYSKAGDFEKARKVFDE 181 (471)
Q Consensus 165 ~~~~~g~~~~a~~~~~~ 181 (471)
..+..|+.+-+..+++.
T Consensus 75 ~A~~~~~~~~v~~Ll~~ 91 (172)
T 3v30_A 75 LASTGGYTDIVGLLLER 91 (172)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHc
Confidence 33444555544444443
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.73 E-value=2.3e+02 Score=21.81 Aligned_cols=50 Identities=10% Similarity=0.006 Sum_probs=37.8
Q ss_pred HhcCCHHHHHHHHHhC--C-CCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 012101 372 GRAGLLEEARAMVEGM--P-MKA--NVVIWGCLMG-A-----CEKFGNVKMGEWVAKHLQE 421 (471)
Q Consensus 372 ~~~g~~~~A~~~~~~m--~-~~p--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 421 (471)
...|++-+|-++++.. . -.+ +...|..||+ . ..+.|+...|..++++...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3459999999999988 2 234 4557777877 2 2468999999999999876
No 354
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.64 E-value=1.1e+02 Score=23.00 Aligned_cols=15 Identities=0% Similarity=-0.108 Sum_probs=7.1
Q ss_pred chHHHHHHHHHHHhC
Q 012101 137 LEIGRQLHSLAVRLG 151 (471)
Q Consensus 137 ~~~a~~~~~~~~~~~ 151 (471)
.-.|.++++.+.+.+
T Consensus 33 h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 33 HATPDDILGEVRKTA 47 (145)
T ss_dssp SBCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhC
Confidence 344555555554443
No 355
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.50 E-value=1.6e+02 Score=25.97 Aligned_cols=153 Identities=8% Similarity=-0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCC
Q 012101 225 MVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANG 304 (471)
Q Consensus 225 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 304 (471)
...++.-|...|+.++|.+.++++ ......+...........=.+...-+.+..++..+.+.+..+-..+..|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el--~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf---- 87 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQEL--ASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGL---- 87 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT--CCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHH----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc--CCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcH----HHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 012101 305 LANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKV----QEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEA 380 (471)
Q Consensus 305 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 380 (471)
.+..+.+.++.-. .|....+..-+-+.+-.... +-...+.+.+... .........++..+.+....+.+
T Consensus 88 --~~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~---g~~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 88 --YEILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPL---GKAASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp --HHHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHH---TCHHHHHHHHHHHHHHHHCHHHH
T ss_pred --HHHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHhCCCC
Q 012101 381 RAMVEGMPMK 390 (471)
Q Consensus 381 ~~~~~~m~~~ 390 (471)
.+++.+-++.
T Consensus 161 ~~~~~~s~l~ 170 (339)
T 1ug3_A 161 GTLWREAGLS 170 (339)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
No 356
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.47 E-value=2.6e+02 Score=22.41 Aligned_cols=47 Identities=11% Similarity=0.245 Sum_probs=32.8
Q ss_pred hHHHHHHHHH---cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC
Q 012101 189 SWNAIIAGLS---QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG 236 (471)
Q Consensus 189 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 236 (471)
....+|+++. +..+++.|+-.+.+|.+.| .|.-..-..++-+.-..|
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3344555554 4588999999999999999 776666666666654444
No 357
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.39 E-value=1.6e+02 Score=19.90 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=25.4
Q ss_pred cCChhhHHHHhccCCCCCcchHHHHHHHHHcCCChh
Q 012101 169 AGDFEKARKVFDENPERKLGSWNAIIAGLSQDGRAK 204 (471)
Q Consensus 169 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 204 (471)
....++|.++++.++.++..+|..++.++.+.+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 455677777777777777777777777777766543
No 358
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.32 E-value=2.1e+02 Score=24.81 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcCC--HHHHHHHHHHHHHhhcCCCCC
Q 012101 190 WNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLGD--LELALQVHKYVFQVKSKQKSD 258 (471)
Q Consensus 190 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 258 (471)
.+.++.-|...|+.++|.+.++++..-.+. .......+..+.-+.++ .+....++..+ .+.++-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L--~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSL--WKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHH--HHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHH--HHCCCCCH
Confidence 567788888888999999888888521111 11233344444444332 45566667666 55554443
No 359
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=25.25 E-value=2e+02 Score=21.16 Aligned_cols=64 Identities=16% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCch
Q 012101 74 IIRTHMLHSYSAAFHWNNIIRLYTRLE-APKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFALE 138 (471)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 138 (471)
.+.+++.+.+.+ ..=..++..+...+ .+-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~~l~~~g~r~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 6 NSELRKAGLKVT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHTTCCCC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 344554444333 44566777777776 78889999999988876666666655566665555443
No 360
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.95 E-value=2.8e+02 Score=24.16 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHHHHHHHHHHhc-----
Q 012101 300 YAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHYGCMVDLLGRA----- 374 (471)
Q Consensus 300 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----- 374 (471)
+...|++++|+..|+... +...+-......+.+++.++.....+- ....-+..-.+.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icreY--------ilal~iEl~Rr~l~~~~ 173 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICREY--------IVGLSMETERKKLPKET 173 (320)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTTSCCCS
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcccCC
Q ss_pred -CCHHHHHHHHHhC---CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 012101 375 -GLLEEARAMVEGM---PMKANVV--IWGCLMGACEKFGNVKMGEWVAKHLQELEPW 425 (471)
Q Consensus 375 -g~~~~A~~~~~~m---~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 425 (471)
.+.....++---+ ++.|... ++..-+..+.+.+++..|..+-+++.+++|.
T Consensus 174 ~~~~kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 174 LEQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 361
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.75 E-value=3.4e+02 Score=23.49 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHhccCCCCCcc--hHHHHHHHHHcCCC--hhHHHHHHHHHHH
Q 012101 159 ESGFISLYSKAGDFEKARKVFDENPERKLG--SWNAIIAGLSQDGR--AKEAIDMFIGLKK 215 (471)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~~~--~~~a~~~~~~m~~ 215 (471)
...++.-|...|+.++|...++++..|... .-..++......++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 356788888899999999999998766522 22333443333333 2334456666653
No 362
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.04 E-value=2.3e+02 Score=21.27 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=6.6
Q ss_pred CcHHHHHHHHHHhHH
Q 012101 339 GKVQEGKHFFEMMKN 353 (471)
Q Consensus 339 ~~~~~a~~~~~~~~~ 353 (471)
+..-.|.++++.+.+
T Consensus 40 ~~~~sa~ei~~~l~~ 54 (150)
T 2xig_A 40 GTHLSPEEITHSIRQ 54 (150)
T ss_dssp SSCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 334444444444433
No 363
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=23.84 E-value=2.3e+02 Score=21.29 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=37.5
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhccC-CchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChh
Q 012101 110 IFMSRAGVLPDCYTLPIVLKASCQLF-ALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFE 173 (471)
Q Consensus 110 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 173 (471)
+.|.+.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456677765543 333455555555 56778888888877665555544334556666666543
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.81 E-value=6.2e+02 Score=26.14 Aligned_cols=108 Identities=9% Similarity=0.027 Sum_probs=66.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCHhhHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--------------------C-
Q 012101 265 LIDMYGKCGRMDLAYKVFWEIDQPNVSSWTSMIVGYAANGLANEALDCFHYMRESGIR--------------------P- 323 (471)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------------p- 323 (471)
++..+...|.++-|.++..-+.. ++..--.+..+|...|++++|..+|++.-. |+. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCccccc
Confidence 55556666666666655444443 333333455666777777777777765421 111 0
Q ss_pred --CHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCC----hhHHHHHHHHHHhcC
Q 012101 324 --NHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPR----FAHYGCMVDLLGRAG 375 (471)
Q Consensus 324 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g 375 (471)
...=|..++..+-+.+.++.+.++-+...+... .-| ...|+.+.++.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 112478899999999999999888888765321 112 236777888777655
No 365
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.66 E-value=2.9e+02 Score=22.33 Aligned_cols=49 Identities=14% Similarity=0.296 Sum_probs=35.0
Q ss_pred chHHHHHHHHH---cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHcCcC
Q 012101 188 GSWNAIIAGLS---QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSACGSLG 236 (471)
Q Consensus 188 ~~~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 236 (471)
..+..+|+++. +.++++.|+-.+.+|.+.|..|.-..-..++-+.-..|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34455566655 45899999999999999998887776666666654433
No 366
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.32 E-value=1.9e+02 Score=20.03 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHHHHhHHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHH
Q 012101 344 GKHFFEMMKNVYQIEPRFAHYGCMVDLLGRAGLLEEARAMVEGM--------PMKANVVIWGCLMG 401 (471)
Q Consensus 344 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~~~~~l~~ 401 (471)
+.++.+++ +.+|+.|+..+...++..|...+- .+.++.++. +..|+..+++.+=.
T Consensus 28 ae~L~eEf-defGi~~~d~VldKc~ELC~~y~l--da~e~VeeWmAFsts~~g~~pT~enL~~FEh 90 (101)
T 2keb_A 28 AQQLAEEL-QIFGLDCEEALIEKLVELCVQYGQ--NEEGMVGELIAFCTSTHKVGLTSEILNSFEH 90 (101)
T ss_dssp HHHHHHHH-HHHTCBCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTCSBCCHHHHHHHHH
T ss_pred HHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 45555555 334888888888888887776664 133333322 77788877776643
No 367
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=23.32 E-value=1.2e+02 Score=24.92 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCC--------C--CCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCC--CCCchHHHHHH
Q 012101 377 LEEARAMVEGMPM--------K--ANVVIWGCLMGACEKFG---------NVKMGEWVAKHLQELEP--WSDGAYVVLSN 435 (471)
Q Consensus 377 ~~~A~~~~~~m~~--------~--p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~--~~~~~~~~l~~ 435 (471)
.+.|..++.+||. . ....-|..+..+|.+.| +.+...++++...+.+. .-|..|..+++
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 5677777777721 1 25567888888888877 55667777777777763 24567888776
Q ss_pred HHHcCCChHHHHHHHHHhhc
Q 012101 436 IYASRGLWEEVERIRAVMKH 455 (471)
Q Consensus 436 ~~~~~g~~~~A~~~~~~m~~ 455 (471)
--.-.-+.++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 65555578888888877654
No 368
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=23.20 E-value=2.6e+02 Score=22.96 Aligned_cols=168 Identities=9% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCcchHH--HHHHHHhccCCchHHHHHHHHHHHhCCCCCcchHHHHHHHHHhcCChhhHHHHhccCC
Q 012101 106 LDIYIFMSRAGVLPDCYTLP--IVLKASCQLFALEIGRQLHSLAVRLGLESNEFCESGFISLYSKAGDFEKARKVFDENP 183 (471)
Q Consensus 106 ~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 183 (471)
.++++.+.+.|..++..... +.+...+..|+.+-+..+++. ...+........+-+...+..|+.+-+..+++.-.
T Consensus 16 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 93 (261)
T 2xai_A 16 QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93 (261)
T ss_dssp HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Q ss_pred CCCcc-hHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCChh
Q 012101 184 ERKLG-SWNAIIAGLSQDGRAKEAIDMFIGLKKCGFEPDDVTMV--SVTSACGSLGDLELALQVHKYVFQVKSKQKSDTL 260 (471)
Q Consensus 184 ~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 260 (471)
..+.. .-.+.+...+..|+.+ +++.+.+.|..++..... +.+...+..|+.+-+..+++ ....+.. ..
T Consensus 94 ~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~-~~ 164 (261)
T 2xai_A 94 SVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE----SGADVNQ-GK 164 (261)
T ss_dssp CSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH----HTCCTTC-CB
T ss_pred CCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH----cCCCCCC-CC
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh
Q 012101 261 MLNSLIDMYGKCGRMDLAYKVFWE 284 (471)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~ 284 (471)
.-.+.+...++.|+.+-+.-+++.
T Consensus 165 ~g~t~Lh~A~~~~~~~~v~~Ll~~ 188 (261)
T 2xai_A 165 GQDSPLHAVARTASEELACLLMDF 188 (261)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCChHHHHHHcCCHHHHHHHHHc
No 369
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.96 E-value=2.2e+02 Score=21.86 Aligned_cols=61 Identities=13% Similarity=-0.037 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC--CcchHHHHHH-H-----HhccCCchHHHHHHHHHHH
Q 012101 88 HWNNIIRLYTRLEAPKKALDIYIFMSRAGVLP--DCYTLPIVLK-A-----SCQLFALEIGRQLHSLAVR 149 (471)
Q Consensus 88 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 149 (471)
+|...+..|- .|++-+|.++|+..=+....+ +...|.-||. . ..+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn-~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYN-SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444444 488888989988886554344 4455666666 2 2456888888888888765
No 370
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.77 E-value=3e+02 Score=22.09 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHH---hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCCc
Q 012101 296 MIVGYA---ANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGGK 340 (471)
Q Consensus 296 li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 340 (471)
+|+++- +..+.+.|+-.+.+|.+.| .|....-..++.+.-..|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 444444 4578999999999999999 8777777777777666554
No 371
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=22.57 E-value=2.1e+02 Score=25.11 Aligned_cols=75 Identities=7% Similarity=0.084 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccCCcHHHHHHHHHHhHHhcCCCCChhHH--HHHHHHH---HhcCCHHHHHHHHH
Q 012101 311 DCFHYMRESGIRPNHVTFVGVLSACVHGGKVQEGKHFFEMMKNVYQIEPRFAHY--GCMVDLL---GRAGLLEEARAMVE 385 (471)
Q Consensus 311 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~--~~li~~~---~~~g~~~~A~~~~~ 385 (471)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+... |. ....+ -+++..+ .-..+.++..+++.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e-g~--~~l~~valaiL~~~~~~Ll~~d~~~il~~L~ 290 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD-GE--EFLFRTALGILKLFEDILTKMDFIHMAQFLT 290 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH-CH--HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc-CC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 46667778899999999998988888877889999999998765 42 21111 1222211 11235666666666
Q ss_pred hCC
Q 012101 386 GMP 388 (471)
Q Consensus 386 ~m~ 388 (471)
.++
T Consensus 291 ~lp 293 (334)
T 2qq8_A 291 RLP 293 (334)
T ss_dssp SCC
T ss_pred hCC
Confidence 663
No 372
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.45 E-value=3.9e+02 Score=23.43 Aligned_cols=79 Identities=3% Similarity=-0.101 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHcCcCCHHHHHHHHHHHHHhhcCCCCCh-h--HHHHHHHH----HHhcCChHHHHH
Q 012101 208 DMFIGLKKCGFEPDDVTMVSVTSACGSLGDLELALQVHKYVFQVKSKQKSDT-L--MLNSLIDM----YGKCGRMDLAYK 280 (471)
Q Consensus 208 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~--~~~~l~~~----~~~~g~~~~A~~ 280 (471)
++++.+.+.|+.|...++..++..+.+.=.++.+.++++.+ ...|..... . +..+++.. ....+++++...
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~--l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~ 307 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTY--QSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLL 307 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHH--TTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHH--HhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 34556667788888888888888888777888888888888 666644321 1 22233322 223467777777
Q ss_pred HHHhcCCC
Q 012101 281 VFWEIDQP 288 (471)
Q Consensus 281 ~~~~~~~~ 288 (471)
+++.+...
T Consensus 308 ~L~~~p~~ 315 (345)
T 2qfz_A 308 FLQNLPTA 315 (345)
T ss_dssp HHTSCSCT
T ss_pred HHHcCCCc
Confidence 77766543
No 373
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.34 E-value=1.3e+02 Score=22.74 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhCC-CchHHHHHHHHHHHCCCCCCcchHHHHHHHHhccCCc
Q 012101 87 FHWNNIIRLYTRLE-APKKALDIYIFMSRAGVLPDCYTLPIVLKASCQLFAL 137 (471)
Q Consensus 87 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 137 (471)
..=..++..+...+ .+-.|.++++.+.+.+...+..|.-.-|+.+...|-+
T Consensus 17 ~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 17 LPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34455667776666 6778899999998877666666666666666666544
No 374
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.02 E-value=1.5e+02 Score=21.66 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=27.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhccCC
Q 012101 295 SMIVGYAANGLANEALDCFHYMRESGIRPNHVTFVGVLSACVHGG 339 (471)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 339 (471)
.++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555555666677777777777665556666555555555554
No 375
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.98 E-value=4.2e+02 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 012101 396 WGCLMGACEKFGNVKMGEWVAKHL 419 (471)
Q Consensus 396 ~~~l~~~~~~~~~~~~a~~~~~~~ 419 (471)
...++.-|...|+.++|.+.++++
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL 243 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKEL 243 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHc
Confidence 445555555555665555555554
No 376
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.65 E-value=1.6e+02 Score=23.59 Aligned_cols=22 Identities=27% Similarity=0.275 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 012101 401 GACEKFGNVKMGEWVAKHLQEL 422 (471)
Q Consensus 401 ~~~~~~~~~~~a~~~~~~~~~~ 422 (471)
..|.+.|.+++|.++|++..+.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHccchHHHHHHHHHHhcC
Confidence 3455666666666666655443
No 377
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.40 E-value=93 Score=22.52 Aligned_cols=42 Identities=5% Similarity=-0.083 Sum_probs=25.1
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHhccCCchHHHHHHHHHHH
Q 012101 108 IYIFMSRAGVLPDCYTLPIVLKASCQLFALEIGRQLHSLAVR 149 (471)
Q Consensus 108 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 149 (471)
+|+.+....+.|+...-..-+..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555544443333334455667788888888877765
No 378
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.86 E-value=1.8e+02 Score=18.84 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=36.7
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHcCcC-CHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 012101 211 IGLKKCGFEPDDVTMVSVTSACGSLG-DLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGR 274 (471)
Q Consensus 211 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 274 (471)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+ .+.+...+..+....++.+.+.|-
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l--~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRL--IDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHH--HHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHH--HHhCCCCCHhhHHHHHHHHHHCCC
Confidence 34566777776544 34555555544 455677777777 555555566666666666666554
No 379
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=20.05 E-value=7.7e+02 Score=25.83 Aligned_cols=256 Identities=11% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHhcccccCchHHHHHHhcccCCCCchhhHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCcchHH
Q 012101 46 THEDPAKIVATQLSKCTNLLQLNQIYAHIIRTHMLHSYSAAFHWNNIIRLYTRLEAPKKALDIYIFMSRAGVLPDCYTLP 125 (471)
Q Consensus 46 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 125 (471)
.+.+....+..|++.+.. -+.++-.++++++...+....| ++++....|-.....-+.+.+....+.+......
T Consensus 305 v~~~~~~~f~~Lv~~lR~----~~~e~L~~l~~~~~~~~~~r~~--~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~ 378 (1056)
T 1lsh_A 305 VHEDAPAKFLRLTAFLRN----VDAGVLQSIWHKLHQQKDYRRW--ILDAVPAMATSEALLFLKRTLASEQLTSAEATQI 378 (1056)
T ss_dssp CCTTHHHHHHHHHHHHTT----SCHHHHHHHHHHHTTSHHHHHH--HHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred cCcchHHHHHHHHHHHhc----CCHHHHHHHHHHHhccHHHHHH--HHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHH
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCC-------cchHHHHHHHHHhcCChhhHHHHhccCCCCCcchHHHHHHHHH
Q 012101 126 IVLKASCQLFALEIGRQLHSLAVRLGLESN-------EFCESGFISLYSKAGDFEKARKVFDENPERKLGSWNAIIAGLS 198 (471)
Q Consensus 126 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 198 (471)
.........-+.+....+++.+....+..+ ..++.+|++-+|... ......-+.-+...+.-..
T Consensus 379 l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~---------~~c~~~~v~~i~~~l~~~~ 449 (1056)
T 1lsh_A 379 VASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANT---------VSCPDELLQPLHDLLSQSS 449 (1056)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTC---------SSCCGGGTHHHHHHHHHHH
T ss_pred HHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccC---------CCCCHHHHHHHHHHHHHHH
Q ss_pred cCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---cCcCCHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 012101 199 QDGRAKEAIDMFIGLKKCGFEPDDVTMVSVTSAC---GSLGDLELALQVHKYVFQVKSKQKSDTLMLNSLIDMYGKCGRM 275 (471)
Q Consensus 199 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (471)
..++.++..-+++-+-..|.+.....+..++..+ .......--......+ ......-...+...++..|...+..
T Consensus 450 ~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL--r~~~~~~p~~v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 450 DRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL--RNIAKRDPRKVQEIVLPIFLNVAIK 527 (1056)
T ss_dssp HTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT--TTGGGTCHHHHHHHHHHHHHCTTSC
T ss_pred hcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHH--HHhhhhchHHHHHHHHHHhcCCCCC
Q ss_pred HHHH--HHHHhcC-CCCHhhHHHHHHHHHhCCChhHHHHHHHHHHH
Q 012101 276 DLAY--KVFWEID-QPNVSSWTSMIVGYAANGLANEALDCFHYMRE 318 (471)
Q Consensus 276 ~~A~--~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 318 (471)
.+.+ .++--|. .|+...+..+........+.+-+--++..+..
T Consensus 528 ~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~s 573 (1056)
T 1lsh_A 528 SELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRS 573 (1056)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Done!