BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012103
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 204/425 (48%), Gaps = 65/425 (15%)
Query: 76 NLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNN-CVKLQYLDLGNNVFSGSFPEIS 134
N G LP D++ +++ L L L FN GE+ + L N L LDL +N FSG P +
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PILP 386
Query: 135 SL-----NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189
+L N LQ LYL +GF+G P +L N + LVSL L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSL--------------------HL 425
Query: 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
++ YL+ G IP +G+L++L +L+L N + GEIP E+ + L L L N L+G
Sbjct: 426 SFNYLS-----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 250 KLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308
++P GL N TNL S N L G++ + + L NL L+L N FSG +PAELG + L
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP----------------------- 345
+ L L TN G +P + + ++ N + G
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 346 --IPPDMCKRGTMRDLLMLQNK-FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP 402
I + R + R+ + ++ + G T+ N ++ +S N L G +P I +P
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 403 EVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462
+ I+++ N I G I ++ + + LN+L N+L G +P+ +S T L I L+NN L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 463 TGKIP 467
+G IP
Sbjct: 717 SGPIP 721
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 188/386 (48%), Gaps = 12/386 (3%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSG 151
L L++ N + G++ D++ CV L++LD+ +N FS P + + LQHL ++ + SG
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237
Query: 152 VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNL 210
F ++ T L L++ N F P P + L L +L L G+IP + G
Sbjct: 238 DFS-RAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTN 269
L L+LS N+ G +P G+ L L L +N SG+LP+ L + L D S N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 270 FLEGDLSE--VRFLTNLVTLQLFKNQFSGEVPAELGKFKK--LVNLSLYTNKLTGALPQE 325
G+L E +L+TL L N FSG + L + K L L L N TG +P
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385
L + +E + +S N L+G IP + +RDL + N GEIP TL+ +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445
N L G +P+G+ +N I ++ N++ G I K I + L +L N SG +P E
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 446 ISKATSLVVIKLNNNQLTGKIPASIY 471
+ SL+ + LN N G IPA+++
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMF 559
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 204/478 (42%), Gaps = 83/478 (17%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
+++S+ N +PF C AL L + N L G+ S+ ++ C +L+ L++ +N F G
Sbjct: 205 LDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 130 FPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFP--------- 180
P + L LQ+L L + F+G P G L L + N F P
Sbjct: 263 IPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 181 ---------------DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELINLELSDNNIS 224
D ++K+ L L L+ G++P + NL+ L+ L+LS NN S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 225 GEIPSEIGNLVK-----LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEV 278
G I + NL + L L L NN +GK+P L N + L + S N+L G + S +
Sbjct: 382 GPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVS 338
L+ L L+L+ N GE+P EL K L L L N LTG +P L + ++I +S
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 339 ENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
N LTG IP + + + L + N F+G IPA +C +L ++ N GT+PA +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 399 WG----------------------------------------------LPEVNIIDIALN 412
+ L N +I
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G + +N ++ L YN LSG +P+EI L ++ L +N ++G IP +
Sbjct: 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 231/484 (47%), Gaps = 71/484 (14%)
Query: 49 NNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSI---------------------- 86
N + C F G+TC D V I+LS++ L + F ++
Sbjct: 36 NKNPCTFDGVTCRDDK--VTSIDLSSKPLN--VGFSAVSSSLLSLTGLESLFLSNSHING 91
Query: 87 ------CQLQALHKLSLGFNSLYGEISK--DLNNCVKLQYLDLGNNV--FSGSFPEISSL 136
C +L L L NSL G ++ L +C L++L++ +N F G L
Sbjct: 92 SVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150
Query: 137 NELQHLYLNLSGFSG--VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194
N L+ L L+ + SG V W+ L L++ N V + L +L +
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDV 207
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP-V 253
++ + IP +G+ + L +L++S N +SG+ I +L L + +NQ G +P +
Sbjct: 208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 254 GLRNLTNLA----NFDAST-NFLEG--------DLSEVRFLTNL----------VTLQLF 290
L++L L+ F +FL G DLS F + +L L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 291 KNQFSGEVPAE-LGKFKKLVNLSLYTNKLTGALPQELGSW-AEFDFIDVSENLLTGPIPP 348
N FSGE+P + L K + L L L N+ +G LP+ L + A +D+S N +GPI P
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 349 DMCK--RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNI 406
++C+ + T+++L + N FTG+IP T +NC L +S N L GT+P+ + L ++
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKI 466
+ + LN +EG I +++ K L L ++N L+GE+P +S T+L I L+NN+LTG+I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 467 PASI 470
P I
Sbjct: 507 PKWI 510
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 213/488 (43%), Gaps = 74/488 (15%)
Query: 56 TGITCNSDSSFVQEIELSNRNLKGTLPFD-SICQ--------------------LQALHK 94
TGI D S +Q +++S L G S C L++L
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273
Query: 95 LSLGFNSLYGEISKDLNN-CVKLQYLDLGNNVFSGSFP---------------------- 131
LSL N GEI L+ C L LDL N F G+ P
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 132 ----EISSLNELQHLYLNLSGFSGVFPWMSLGNMT-NLVSLSVGDNPFDPTPFPDQVVK- 185
+ + L+ L L+ + FSG P SL N++ +L++L + N F P+
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
N L LYL N G+IP + N +EL++L LS N +SG IPS +G+L KL L+L+ N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
L G++P L + L N L G++ S + TNL + L N+ +GE+P +G+
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG--------TM 356
+ L L L N +G +P ELG ++D++ NL G IP M K+
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSN-NSLKGTVPAGIWGL-------------P 402
+ + ++N + N L Q R N L P I
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 403 EVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462
+ +D++ N + G I K+I + L +L +N +SG +P+E+ L ++ L++N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 463 TGKIPASI 470
G+IP ++
Sbjct: 693 DGRIPQAM 700
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
I LSN L G +P I +L+ L L L NS G I +L +C L +LDL N+F+G+
Sbjct: 495 ISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 130 FPEI-----------------------SSLNELQHLYLNLSGFSGV----FPWMSLGNMT 162
P + + H NL F G+ +S N
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222
N+ S G + +P D + L+ Y + G IP EIG++ L L L N+
Sbjct: 614 NITSRVYGGHT---SPTFDNNGSMMFLDMSYNM---LSGYIPKEIGSMPYLFILNLGHND 667
Query: 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEV 278
ISG IP E+G+L L L+L +N+L G++P + LT L D S N L G + E+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/425 (31%), Positives = 204/425 (48%), Gaps = 65/425 (15%)
Query: 76 NLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNN-CVKLQYLDLGNNVFSGSFPEIS 134
N G LP D++ +++ L L L FN GE+ + L N L LDL +N FSG P +
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG--PILP 383
Query: 135 SL-----NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189
+L N LQ LYL +GF+G P +L N + LVSL L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSL--------------------HL 422
Query: 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
++ YL+ G IP +G+L++L +L+L N + GEIP E+ + L L L N L+G
Sbjct: 423 SFNYLS-----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 477
Query: 250 KLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308
++P GL N TNL S N L G++ + + L NL L+L N FSG +PAELG + L
Sbjct: 478 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP----------------------- 345
+ L L TN G +P + + ++ N + G
Sbjct: 538 IWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 346 --IPPDMCKRGTMRDLLMLQNK-FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP 402
I + R + R+ + ++ + G T+ N ++ +S N L G +P I +P
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 403 EVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462
+ I+++ N I G I ++ + + LN+L N+L G +P+ +S T L I L+NN L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 463 TGKIP 467
+G IP
Sbjct: 714 SGPIP 718
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 188/386 (48%), Gaps = 12/386 (3%)
Query: 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSG 151
L L++ N + G++ D++ CV L++LD+ +N FS P + + LQHL ++ + SG
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 234
Query: 152 VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEI-GNL 210
F ++ T L L++ N F P P + L L +L L G+IP + G
Sbjct: 235 DFS-RAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTN 269
L L+LS N+ G +P G+ L L L +N SG+LP+ L + L D S N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 270 FLEGDLSE--VRFLTNLVTLQLFKNQFSGEVPAELGKFKK--LVNLSLYTNKLTGALPQE 325
G+L E +L+TL L N FSG + L + K L L L N TG +P
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385
L + +E + +S N L+G IP + +RDL + N GEIP TL+ +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445
N L G +P+G+ +N I ++ N++ G I K I + L +L N SG +P E
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 446 ISKATSLVVIKLNNNQLTGKIPASIY 471
+ SL+ + LN N G IPA+++
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMF 556
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/478 (27%), Positives = 204/478 (42%), Gaps = 83/478 (17%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
+++S+ N +PF C AL L + N L G+ S+ ++ C +L+ L++ +N F G
Sbjct: 202 LDVSSNNFSTGIPFLGDCS--ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 130 FPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFP--------- 180
P + L LQ+L L + F+G P G L L + N F P
Sbjct: 260 IPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 181 ---------------DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELINLELSDNNIS 224
D ++K+ L L L+ G++P + NL+ L+ L+LS NN S
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 225 GEIPSEIGNLVK-----LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEV 278
G I + NL + L L L NN +GK+P L N + L + S N+L G + S +
Sbjct: 379 GPI---LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVS 338
L+ L L+L+ N GE+P EL K L L L N LTG +P L + ++I +S
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 339 ENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398
N LTG IP + + + L + N F+G IPA +C +L ++ N GT+PA +
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 399 WG----------------------------------------------LPEVNIIDIALN 412
+ L N +I
Sbjct: 556 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 615
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
G + +N ++ L YN LSG +P+EI L ++ L +N ++G IP +
Sbjct: 616 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 142/484 (29%), Positives = 231/484 (47%), Gaps = 71/484 (14%)
Query: 49 NNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSI---------------------- 86
N + C F G+TC D V I+LS++ L + F ++
Sbjct: 33 NKNPCTFDGVTCRDDK--VTSIDLSSKPLN--VGFSAVSSSLLSLTGLESLFLSNSHING 88
Query: 87 ------CQLQALHKLSLGFNSLYGEISK--DLNNCVKLQYLDLGNNV--FSGSFPEISSL 136
C +L L L NSL G ++ L +C L++L++ +N F G L
Sbjct: 89 SVSGFKCS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 147
Query: 137 NELQHLYLNLSGFSG--VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194
N L+ L L+ + SG V W+ L L++ N V + L +L +
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---DVSRCVNLEFLDV 204
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP-V 253
++ + IP +G+ + L +L++S N +SG+ I +L L + +NQ G +P +
Sbjct: 205 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 254 GLRNLTNLA----NFDAST-NFLEG--------DLSEVRFLTNL----------VTLQLF 290
L++L L+ F +FL G DLS F + +L L
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 291 KNQFSGEVPAE-LGKFKKLVNLSLYTNKLTGALPQELGSW-AEFDFIDVSENLLTGPIPP 348
N FSGE+P + L K + L L L N+ +G LP+ L + A +D+S N +GPI P
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 349 DMCK--RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNI 406
++C+ + T+++L + N FTG+IP T +NC L +S N L GT+P+ + L ++
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKI 466
+ + LN +EG I +++ K L L ++N L+GE+P +S T+L I L+NN+LTG+I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 467 PASI 470
P I
Sbjct: 504 PKWI 507
Score = 134 bits (338), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 213/488 (43%), Gaps = 74/488 (15%)
Query: 56 TGITCNSDSSFVQEIELSNRNLKGTLPFD-SICQ--------------------LQALHK 94
TGI D S +Q +++S L G S C L++L
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 270
Query: 95 LSLGFNSLYGEISKDLNN-CVKLQYLDLGNNVFSGSFP---------------------- 131
LSL N GEI L+ C L LDL N F G+ P
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 132 ----EISSLNELQHLYLNLSGFSGVFPWMSLGNMT-NLVSLSVGDNPFDPTPFPDQVVK- 185
+ + L+ L L+ + FSG P SL N++ +L++L + N F P+
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 389
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
N L LYL N G+IP + N +EL++L LS N +SG IPS +G+L KL L+L+ N
Sbjct: 390 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 449
Query: 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDL-SEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
L G++P L + L N L G++ S + TNL + L N+ +GE+P +G+
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG--------TM 356
+ L L L N +G +P ELG ++D++ NL G IP M K+
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSN-NSLKGTVPAGIWGL-------------P 402
+ + ++N + N L Q R N L P I
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 403 EVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462
+ +D++ N + G I K+I + L +L +N +SG +P+E+ L ++ L++N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 463 TGKIPASI 470
G+IP ++
Sbjct: 690 DGRIPQAM 697
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129
I LSN L G +P I +L+ L L L NS G I +L +C L +LDL N+F+G+
Sbjct: 492 ISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 130 FPEI-----------------------SSLNELQHLYLNLSGFSGV----FPWMSLGNMT 162
P + + H NL F G+ +S N
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222
N+ S G + +P D + L+ Y + G IP EIG++ L L L N+
Sbjct: 611 NITSRVYGGHT---SPTFDNNGSMMFLDMSYNM---LSGYIPKEIGSMPYLFILNLGHND 664
Query: 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEV 278
ISG IP E+G+L L L+L +N+L G++P + LT L D S N L G + E+
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 110/234 (47%), Gaps = 33/234 (14%)
Query: 144 LNLSGFSGVFPW---MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSID 200
L+LSG + P+ SL N+ L L +G P P + KL +L++LY+T+ ++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 201 GQI------------------------PVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236
G I P I +L L+ + N ISG IP G+ K
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 237 LW-RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLT--NLVTLQLFKNQ 293
L+ + + N+L+GK+P NL NLA D S N LEGD S V F + N + L KN
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS-VLFGSDKNTQKIHLAKNS 232
Query: 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347
+ ++ ++G K L L L N++ G LPQ L ++VS N L G IP
Sbjct: 233 LAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 127/297 (42%), Gaps = 54/297 (18%)
Query: 176 PTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
P P P + L LN+LY IG + NN+ G IP I L
Sbjct: 65 PYPIPSSLANLPYLNFLY-------------IGGI----------NNLVGPIPPAIAKLT 101
Query: 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQF 294
+L L + + +SG +P L + L D S N L G L + L NLV + N+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161
Query: 295 SGEVPAELGKFKKL-VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353
SG +P G F KL ++++ N+LTG +P + F+D+S N+L G
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD-------- 212
Query: 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE-VNIIDIALN 412
+L +K T Q+ ++ NSL + G GL + +N +D+ N
Sbjct: 213 ---ASVLFGSDKNT-------------QKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNN 254
Query: 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGK-IPA 468
+I G + + + K L+ L +N L GE+P+ + V NN L G +PA
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPA 311
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 34/256 (13%)
Query: 53 CNFT--GITCNSDSSF--VQEIELSNRNLKGTLPF-DSICQLQALHKLSLG-FNSLYGEI 106
CN T G+ C++D+ V ++LS NL P S+ L L+ L +G N+L G I
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93
Query: 107 SKDLNNCVKLQYLDLGNNVFSGSFPE-ISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165
+ +L YL + + SG+ P+ +S + L L + + SG P S+ ++ NLV
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLV 152
Query: 166 SLSVGDNPFDPTPFPDQVVKLNKL-NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224
++ N PD +KL + ++ + G+IP NL L ++LS N +
Sbjct: 153 GITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210
Query: 225 GEIP-----------------------SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNL 261
G+ ++G L L+L NN++ G LP GL L L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 262 ANFDASTNFLEGDLSE 277
+ + S N L G++ +
Sbjct: 271 HSLNVSFNNLCGEIPQ 286
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 370 IPATYANCLTLQRFRVSN-NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKAL 428
IP++ AN L + N+L G +P I L +++ + I + G I + K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 429 NLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469
L YN LSG LP IS +LV I + N+++G IP S
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 381 QRFRVSNNSLKG-------TVPAGIWGLPEVNIIDIA-LNQIEGPITKDIENAKALNLLF 432
Q +RV+N L G +P+ + LP +N + I +N + GPI I L+ L+
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 433 AEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470
+ +SG +P+ +S+ +LV + + N L+G +P SI
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDL 121
++L N + GTLP + QL+ LH L++ FN+L GEI + N LQ D+
Sbjct: 249 LDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQGGN----LQRFDV 295
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 165/379 (43%), Gaps = 56/379 (14%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 14 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 70
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 71 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 122
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE-------------IGNLTELINLELSD 220
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 123 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS 181
Query: 221 NNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE 277
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 182 NKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT 233
Query: 278 VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337
+ LTNL L L NQ S P L KL L L N+++ P L +++
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPA 396
+EN L D+ +++L L F + + LT LQR SNN + +
Sbjct: 290 NENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV--S 342
Query: 397 GIWGLPEVNIIDIALNQIE 415
+ L +N + NQI
Sbjct: 343 SLANLTNINWLSAGHNQIS 361
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 100/380 (26%), Positives = 165/380 (43%), Gaps = 57/380 (15%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 14 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 70
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 71 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 122
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE--------------IGNLTELINLELS 219
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 123 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDIS 181
Query: 220 DNNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 182 SNKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIG 233
Query: 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFID 336
+ LTNL L L NQ S P L KL L L N+++ P L ++
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 337 VSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVP 395
++EN L D+ +++L L F + + LT LQR SNN +
Sbjct: 290 LNENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV-- 342
Query: 396 AGIWGLPEVNIIDIALNQIE 415
+ + L +N + NQI
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 165/379 (43%), Gaps = 56/379 (14%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 18 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 74
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 75 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 126
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE-------------IGNLTELINLELSD 220
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 127 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 185
Query: 221 NNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE 277
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 186 NKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT 237
Query: 278 VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337
+ LTNL L L NQ S P L KL L L N+++ P L +++
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 293
Query: 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPA 396
+EN L D+ +++L L F + + LT LQR +NN + +
Sbjct: 294 NENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV--S 346
Query: 397 GIWGLPEVNIIDIALNQIE 415
+ L +N + NQI
Sbjct: 347 SLANLTNINWLSAGHNQIS 365
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 164/379 (43%), Gaps = 56/379 (14%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 75
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 76 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 127
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE-------------IGNLTELINLELSD 220
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 128 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186
Query: 221 NNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE 277
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 187 NKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT 238
Query: 278 VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337
+ LTNL L L NQ S P L KL L L N+++ P L +++
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294
Query: 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPA 396
+EN L D+ +++L L F + + LT LQR NN + +
Sbjct: 295 NENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--S 347
Query: 397 GIWGLPEVNIIDIALNQIE 415
+ L +N + NQI
Sbjct: 348 SLANLTNINWLSAGHNQIS 366
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 164/379 (43%), Gaps = 56/379 (14%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 14 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 70
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 71 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 122
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE-------------IGNLTELINLELSD 220
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 123 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS 181
Query: 221 NNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE 277
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 182 NKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIGT 233
Query: 278 VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337
+ LTNL L L NQ S P L KL L L N+++ P L +++
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 289
Query: 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVPA 396
+EN L D+ +++L L F + + LT LQR NN + +
Sbjct: 290 NENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--S 342
Query: 397 GIWGLPEVNIIDIALNQIE 415
+ L +N + NQI
Sbjct: 343 SLANLTNINWLSAGHNQIS 361
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 164/380 (43%), Gaps = 57/380 (15%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 14 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 70
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 71 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 122
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE--------------IGNLTELINLELS 219
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 123 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDIS 181
Query: 220 DNNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 182 SNKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIG 233
Query: 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFID 336
+ LTNL L L NQ S P L KL L L N+++ P L ++
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 337 VSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVP 395
++EN L D+ +++L L F + + LT LQR NN +
Sbjct: 290 LNENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-- 342
Query: 396 AGIWGLPEVNIIDIALNQIE 415
+ + L +N + NQI
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 99/380 (26%), Positives = 164/380 (43%), Gaps = 57/380 (15%)
Query: 62 SDSSFVQEIE--LSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYL 119
+D++ ++++ L N+ T+ + Q+ L LG S+ G + LNN ++ +
Sbjct: 14 TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINF- 70
Query: 120 DLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPF 179
NN + P + +L +L + +N + + + P L N+TNL L++ +N
Sbjct: 71 --SNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDI-- 122
Query: 180 PDQVVKLNKLNWLYLTNCSID------GQIPVE--------------IGNLTELINLELS 219
D + L LN L L++ +I G ++ + NLT L L++S
Sbjct: 123 -DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDIS 181
Query: 220 DNNISGEIPSEIGNLVKLWRLE---LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276
N +S +I L KL LE NNQ+S P+G+ LTNL + N L+ D+
Sbjct: 182 SNKVS-----DISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK-DIG 233
Query: 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFID 336
+ LTNL L L NQ S P L KL L L N+++ P L ++
Sbjct: 234 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 289
Query: 337 VSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT-LQRFRVSNNSLKGTVP 395
++EN L D+ +++L L F + + LT LQR NN +
Sbjct: 290 LNENQL-----EDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-- 342
Query: 396 AGIWGLPEVNIIDIALNQIE 415
+ + L +N + NQI
Sbjct: 343 SSLANLTNINWLSAGHNQIS 362
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 114/275 (41%), Gaps = 55/275 (20%)
Query: 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169
L+N VKL L +G N + + +L L+ LYLN S + P L N+T SL++
Sbjct: 84 LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISP---LANLTKXYSLNL 139
Query: 170 GDNP--FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEI 227
G N D +P + LN+L +T + P I NLT+L +L L+ N I
Sbjct: 140 GANHNLSDLSPLSNXT----GLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193
Query: 228 P--------------------SEIGNLVKLWRLELYNNQLSGKLPVG------------- 254
P + + N +L L++ NN+++ P+
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253
Query: 255 -------LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
+++LT L + +N + D+S + L+ L +L L NQ E +G
Sbjct: 254 QISDINAVKDLTKLKXLNVGSNQI-SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTN 312
Query: 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLL 342
L L L N +T P L S ++ D D + ++
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKXDSADFANQVI 345
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 81/206 (39%), Gaps = 36/206 (17%)
Query: 53 CNFTGITCNSDS---------SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFN--S 101
C+ T I CNS S +EL + L+ +LP +L L KLSL N S
Sbjct: 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 102 LYGEISKDLNNCVKLQYLDLGNN---VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSL 158
G S+ L+YLDL N S +F + L L + NL S ++SL
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 159 GNM---------------------TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNC 197
N+ ++L L + N F PD +L L +L L+ C
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 198 SIDGQIPVEIGNLTELINLELSDNNI 223
++ P +L+ L L +S NN
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 13/128 (10%)
Query: 116 LQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF- 174
++ LDL + + P ++ L+ LQ LYL+L+ + + P L +TNL LS+G+N
Sbjct: 115 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNNQVN 170
Query: 175 DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNL 234
D TP L+KL L + I P + +L LI + L DN IS P + NL
Sbjct: 171 DLTPL----ANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANL 222
Query: 235 VKLWRLEL 242
L+ + L
Sbjct: 223 SNLFIVTL 230
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269
L LI LEL DN I+ P + NL K+ LEL N L K + L ++ D ++
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTST 123
Query: 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323
+ D++ + L+NL L L NQ + P L L LS+ N++ P
Sbjct: 124 QIT-DVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP 174
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 99/239 (41%), Gaps = 36/239 (15%)
Query: 84 DSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEI-SSLNELQ-H 141
D LQ L+ L L N + K + KLQ L + N P + SSL EL+ H
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIH 131
Query: 142 LYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG 201
GVF + N+ + +G NP + + F KLN+L ++ + G
Sbjct: 132 DNRIRKVPKGVF-----SGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186
Query: 202 QIPVEIGNLTELIN-LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN 260
IP +L E +N L L N I ++ KL+RL L +NQ +R + N
Sbjct: 187 -IP---KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ--------IRMIEN 234
Query: 261 LANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
G LS FL L L L N+ S VPA L K L + L+TN +T
Sbjct: 235 ------------GSLS---FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 26/188 (13%)
Query: 192 LYLTNCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249
L + CS G +P EI T L L+L +N+IS + L L+ L L NN++S
Sbjct: 35 LRVVQCSDLGLKAVPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 250 KLPVGLRNLTNLANFDASTNFLEGDLSEV--RFLTNLVTLQLFKNQFSGEVPAELGKFKK 307
L L S N L E+ ++LV L++ N+ +VP G F
Sbjct: 93 IHEKAFSPLRKLQKLYISKNH----LVEIPPNLPSSLVELRIHDNRIR-KVPK--GVFSG 145
Query: 308 LVNLSLYTNKLTGALPQELGSW--AEFD-----FIDVSENLLTGPIPPDMCKRGTMRDLL 360
L N++ G P E + FD ++ +SE LTG IP D+ + T+ +L
Sbjct: 146 LRNMNCIE---MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPE--TLNELH 199
Query: 361 MLQNKFTG 368
+ NK
Sbjct: 200 LDHNKIQA 207
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242
+ K + L LYL S+ ++P EI NL+ L L+LS N ++ +P+E+G+ +L
Sbjct: 243 IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF 300
Query: 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP 299
++N ++ LP NL NL N LE ++ ++ L + E+P
Sbjct: 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 230 EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289
+I N + + + Y++QL L +L+NL F+ S N + D FLT L L
Sbjct: 208 DIENRMVMPKDSKYDDQLWHAL-----DLSNLQIFNISANIFKYD-----FLTRLY---L 254
Query: 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
N + E+PAE+ L L L N+LT +LP ELGS + + +N++T
Sbjct: 255 NGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIW-GLPEVNIIDIALNQIEGP 417
L + N+ T P + + + L+ + +N L G +P G++ L ++ ++D+ NQ+
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 418 ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462
+ + L LF N+L+ ELP I + T L + L+ NQL
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 196 NCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL 255
+C V G T L L DN I+ P +L+ L L L +NQL G LPVG+
Sbjct: 25 DCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 256 -RNLTNLANFDASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSL 313
+LT L D TN L S V L +L L + N+ + E+P + + L +L+L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 314 YTNKL 318
N+L
Sbjct: 143 DQNQL 147
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLS---LYTNKLTGALPQEL-GSWAEFDFIDV 337
TN L L NQ + P G F L+NL L +N+L GALP + S + +D+
Sbjct: 40 TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 338 SENLLTGPIPPDMCKR-GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPA 396
N LT +P + R +++L M NK T E+P L + N LK ++P
Sbjct: 96 GTNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH 152
Query: 397 G 397
G
Sbjct: 153 G 153
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L+ L+ L LT I P LT L NL + ++ IG L+ L +L + +N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 246 QL-SGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFL 281
+ S KLP NLTNL + D S N+++ +++++FL
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 42/250 (16%)
Query: 78 KGTLPFDSICQLQ-----ALHKLSLGFNSLYGEI--SKDLNNCVKLQYLDLGNNVFS--G 128
+ L F C +L L L FN G I S + +LQ+LD ++
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVT 415
Query: 129 SFPEISSLNELQHLYLNLS------GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
F SL +L LYL++S F G+F LG +T+L +L + N F +
Sbjct: 416 EFSAFLSLEKL--LYLDISYTNTKIDFDGIF----LG-LTSLNTLKMAGNSFKDNTLSNV 468
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242
L +L L+ C ++ L L L +S NN+ S L L L+
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 243 YNNQLSG------KLPVGLR--NLTN--LANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292
N++ P L NLTN +A FL+ + +FL N+
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNV-------E 581
Query: 293 QFSGEVPAEL 302
Q + P E+
Sbjct: 582 QMTCATPVEM 591
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L+ L+ L LT I P LT L NL + ++ IG L+ L +L + +N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 246 QL-SGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFL 281
+ S KLP NLTNL + D S N+++ +++++FL
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 171
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 42/250 (16%)
Query: 78 KGTLPFDSICQLQ-----ALHKLSLGFNSLYGEI--SKDLNNCVKLQYLDLGNNVFS--G 128
+ L F C +L L L FN G I S + +LQ+LD ++
Sbjct: 354 RNALSFSGCCSYSDLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVT 410
Query: 129 SFPEISSLNELQHLYLNLS------GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ 182
F SL +L LYL++S F G+F LG +T+L +L + N F +
Sbjct: 411 EFSAFLSLEKL--LYLDISYTNTKIDFDGIF----LG-LTSLNTLKMAGNSFKDNTLSNV 463
Query: 183 VVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242
L +L L+ C ++ L L L +S NN+ S L L L+
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 523
Query: 243 YNNQLSG------KLPVGLR--NLTN--LANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292
N++ P L NLTN +A FL+ + +FL N+
Sbjct: 524 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNV-------E 576
Query: 293 QFSGEVPAEL 302
Q + P E+
Sbjct: 577 QMTCATPVEM 586
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L KL WL L + +LTEL L L++N ++ +L +L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 246 QLSGKLPVGL-RNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLFKNQFSGEVPAELG 303
QL LP G+ LT L +TN L+ LTNL TL L NQ
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 304 KFKKLVNLSLYTNKL 318
+ KL ++L+ N+
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 78/204 (38%), Gaps = 32/204 (15%)
Query: 117 QYLDLGNNVFSGSFPEIS--SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF 174
+ LDL +N S S P + L +L+ LYLN + P + NL +L V DN
Sbjct: 40 KKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
Query: 175 DPTPFP--DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIG 232
P DQ+V L +L L + P +LT+L L L N +
Sbjct: 98 QALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292
L L L LYNNQL ++P G FD LT L TL+L N
Sbjct: 155 KLTSLKELRLYNNQLK-RVPEGA--------FDK--------------LTELKTLKLDNN 191
Query: 293 QFSGEVPAELGKFKKLVNLSLYTN 316
Q +KL L L N
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 65/161 (40%), Gaps = 9/161 (5%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE---LSDNNISGEIPSEIGNLVKLWRLE 241
+L KL LYL + + +P G EL NLE ++DN + LV L L
Sbjct: 59 RLTKLRLLYLNDNKLQ-TLPA--GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115
Query: 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVP 299
L NQL P +LT L N L+ L + F LT+L L+L+ NQ
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 300 AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340
K +L L L N+L S + + + EN
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 28/186 (15%)
Query: 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEG- 273
L+L N +S L KL L L +N+L LP G+ + L NL + N L+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQAL 100
Query: 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFD 333
+ L NL L+L +NQ P KL LSL N+L +LP+ + FD
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV-----FD 154
Query: 334 FIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393
K ++++L + N+ + L+ ++ NN LK
Sbjct: 155 ------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-R 195
Query: 394 VPAGIW 399
VP G +
Sbjct: 196 VPEGAF 201
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 67 VQEIELSNRNLKGTLP--FDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNN 124
+ E+ L LK P FDS+ +L L SLG+N L + L+ L L NN
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYL---SLGYNELQSLPKGVFDKLTSLKELRLYNN 167
Query: 125 ----VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT 177
V G+F L EL+ L L+ + V P + ++ L L + +NP+D T
Sbjct: 168 QLKRVPEGAF---DKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDCT 220
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 17/179 (9%)
Query: 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR-GTM 356
+PA+ K L L +NKL+ + + + +++N L +P + K +
Sbjct: 35 IPADTKK------LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87
Query: 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416
L + NK + + L R+ N LK P L ++ + + N+++
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 417 ---PITKDIENAKALNLLFAEYNRLSGELPE-EISKATSLVVIKLNNNQLTGKIPASIY 471
+ + + K L L YN +PE K T L +KL+NNQL ++P +
Sbjct: 148 LPKGVFDKLTSLKELRL----YNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 80 TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF----SGSFPEISS 135
LP QL L +L L N L + ++ KL YL LG N G F +++S
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 136 LNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTP 178
L EL+ LY N P + +T L +L + +N P
Sbjct: 159 LKELR-LYNNQLKR---VPEGAFDKLTELKTLKLDNNQLKRVP 197
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245
L KL WL L + +LTEL L L++N ++ +L +L +L L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 246 QLSGKLPVGL-RNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLFKNQFSGEVPAELG 303
QL LP G+ LT L +TN L+ LTNL TL L NQ
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 304 KFKKLVNLSLYTNKL 318
+ KL ++L+ N+
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 73/186 (39%), Gaps = 11/186 (5%)
Query: 122 GNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP----FDPT 177
GN + S L L+L+ + +G+ + +T L L + DN DPT
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDA-AAFTGLTLLEQLDLSDNAQLRVVDPT 98
Query: 178 PFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL 237
F L L+ L+L C + P L L L L DNN+ + +L L
Sbjct: 99 TF----RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 238 WRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLFKNQFSG 296
L L+ N++ R L +L N + R L L+TL LF N S
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS- 213
Query: 297 EVPAEL 302
+PAE+
Sbjct: 214 MLPAEV 219
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 35/147 (23%)
Query: 115 KLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPF 174
++ LDL + + P ++ L+ LQ LYL+L+ + + P L +TNL LS+G+
Sbjct: 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGN--- 160
Query: 175 DPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNL 234
QV L L NL++L L+ DN IS P + +L
Sbjct: 161 ------AQVSDLTPL------------------ANLSKLTTLKADDNKISDISP--LASL 194
Query: 235 VKLWRLELYNNQLSGKLPVGLRNLTNL 261
L + L NNQ+S P L N +NL
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNL 219
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269
L LI LEL DN I+ P + NL K+ LEL N L K + L ++ D ++
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTST 117
Query: 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVP 299
+ D++ + L+NL L L NQ + P
Sbjct: 118 QIT-DVTPLAGLSNLQVLYLDLNQITNISP 146
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 57/147 (38%), Gaps = 24/147 (16%)
Query: 101 SLYGEISKDLNNCVKLQYLDLGNN---VFSGSFPEISSLNELQHLYLNLSGFSGVFPWMS 157
S G S+ + L+YLDL N S +F + L L + NL S ++S
Sbjct: 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443
Query: 158 LGNM---------------------TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196
L N+ ++L L + N F PD +L L +L L+
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 197 CSIDGQIPVEIGNLTELINLELSDNNI 223
C ++ P +L+ L L +S NN
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 113 CVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++ D
Sbjct: 38 CMELNFYKIPDNLPFSTKNLDLS-FNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIED 93
Query: 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
+ L+ L+ L LT I L+ L L + N++ I
Sbjct: 94 GAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 144
Query: 232 GNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTN 269
G+L L L + +N + S KLP NLTNL + D S+N
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL-YLNLS-- 147
+L L L FN + +S + +L++LD ++ E S L++L YL++S
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 431
Query: 148 ----GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI 203
F+G+F +++L L + N F PD +L L +L L+ C ++
Sbjct: 432 HTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 204 PVEIGNLTELINLELSDNNI 223
P +L+ L L +S NN
Sbjct: 487 PTAFNSLSSLQVLNMSHNNF 506
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 113 CVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++ D
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLS-FNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIED 69
Query: 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
+ L+ L+ L LT I L+ L L + N++ I
Sbjct: 70 GAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 232 GNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTN 269
G+L L L + +N + S KLP NLTNL + D S+N
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 14/169 (8%)
Query: 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHL-YLNLS-- 147
+L L L FN + +S + +L++LD ++ E S L++L YL++S
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 431
Query: 148 ----GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQI 203
F+G+F +++L L + N F PD +L L +L L+ C ++
Sbjct: 432 HTRVAFNGIF-----NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP 252
P +L+ L L ++ N + L L ++ L+ N P
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 113 CVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++ D
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLS-FNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIED 69
Query: 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
+ L+ L+ L LT I L+ L L + N++ I
Sbjct: 70 GAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 232 GNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTN 269
G+L L L + +N + S KLP NLTNL + D S+N
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 124 NVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV 183
N+ S + + NEL + ++ S + + + N+ L++G N +
Sbjct: 25 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SAL 81
Query: 184 VKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243
+L L +L LT + LT L L L +N + L L L L
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 244 NNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPA 300
+NQL LP G+ LTNL D S N L+ L E F LT L L+L++NQ VP
Sbjct: 142 HNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKS-VPD 198
Query: 301 ELGKFKKLVNL 311
G F +L +L
Sbjct: 199 --GVFDRLTSL 207
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 206 EIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLANF 264
E+ NLT LI L+ N + L L L L NQL LP G+ LTNL
Sbjct: 83 ELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYL 138
Query: 265 DASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318
+ + N L+ L + F LTNL L L NQ K +L +L LY N+L
Sbjct: 139 NLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 7/157 (4%)
Query: 164 LVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223
L L + DN + P L +L+ L+L C + P L L L L DN +
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 224 SG---EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVR 279
+ ++GNL L+ L+ N++S R L +L N + R
Sbjct: 141 QALPDDTFRDLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTN 316
L L+TL LF N S L + L L L N
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 60/157 (38%), Gaps = 7/157 (4%)
Query: 164 LVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223
L L + DN + P L +L+ L+L C + P L L L L DN +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 224 SG---EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVR 279
+ ++GNL L+ L+ N++S R L +L N + R
Sbjct: 142 QALPDDTFRDLGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTN 316
L L+TL LF N S L + L L L N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSL-GFNSLYGEISKDLNNCVKLQYLDLGNNV 125
+++IE+S ++ + D L LH++ + N+L + N LQYL L +N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL-LISNT 114
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
P++ ++ LQ + L++ N+ ++ N F F ++
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD--------------NINIHTIERNSFVGLSFESVILW 160
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
LNK + NC+ +G T+L L LSDNN E+P+++
Sbjct: 161 LNKNGIQEIHNCAFNG---------TQLDELNLSDNNNLEELPNDV 197
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 118 YLDLGNNVFSGS-FPEISSLNELQHLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGDNPFD 175
+L+ NVF+ S F S+L LQ L L +G F + NM++L +L V N +
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 176 PTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235
+ + L L++ + G + + ++++L NN IP ++ +L
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NNRIMSIPKDVTHLQ 473
Query: 236 KLWRLELYNNQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQF 294
L L + +NQL +P G+ LT+L N + +R+L+ + N+
Sbjct: 474 ALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI------NKH 526
Query: 295 SGEVPAELG 303
SG V G
Sbjct: 527 SGVVRNSAG 535
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPE 444
+S+N L G+V + P+V ++D+ N+I I KD+ + +AL L N+L
Sbjct: 435 LSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDG 491
Query: 445 EISKATSLVVIKLNNNQLTGKIPASIY 471
+ TSL I L++N P Y
Sbjct: 492 VFDRLTSLQYIWLHDNPWDCTCPGIRY 518
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 201 GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLT 259
+P I T++ L L DN I+ P L +L RL+L NNQL+ LP G+ LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 260 NLANFDASTNFLE----GDLSEVRFLTNL 284
L + N L+ G +R LT++
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 69/176 (39%), Gaps = 10/176 (5%)
Query: 197 CSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLR 256
C G+ V G + L+L N++ L L +L L N+L LP G+
Sbjct: 14 CYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVF 72
Query: 257 N-LTNLANFDASTNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314
N LT+L + STN L+ + V LT L L L NQ K +L +L LY
Sbjct: 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEI 370
N+L +I + +N P C +R L NK +G +
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDN-------PWDCTCPGIRYLSEWINKHSGVV 181
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 185 KLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244
+L L +L LT + LT L L L +N + L L L LY+
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 245 NQLSGKLPVGL-RNLTNLANFDASTNFLEGDLSEVRF--LTNLVTLQLFKNQFSGEVPAE 301
NQL LP G+ LTNL D N L+ L E F LT L L L NQ VP
Sbjct: 143 NQLQS-LPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS-VPD- 198
Query: 302 LGKFKKLVNLS 312
G F +L +L+
Sbjct: 199 -GVFDRLTSLT 208
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 110/279 (39%), Gaps = 20/279 (7%)
Query: 75 RNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFS----GSF 130
+N TL D L +L L N + NN L+ L L +N G F
Sbjct: 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100
Query: 131 PEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK-LNKL 189
+S+L +L ++ + + +M ++ NL SL VGDN D + LN L
Sbjct: 101 TGLSNLTKLD---ISENKIVILLDYM-FQDLYNLKSLEVGDN--DLVYISHRAFSGLNSL 154
Query: 190 NWLYLTNCSIDGQIPVE-IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL----YN 244
L L C++ IP E + +L LI L L NI+ L +L LE+ Y
Sbjct: 155 EQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 245 NQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304
+ ++ GL NLT+L+ N VR L L L L N S + L +
Sbjct: 214 DTMTPNCLYGL-NLTSLS--ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343
+L + L +L P ++VS N LT
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 201 GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLT 259
+P I T++ L L DN I+ P L +L RL+L NNQL+ LP G+ LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 260 NLANFDASTNFLE----GDLSEVRFLTNL 284
L + N L+ G ++ LT++
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 201 GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLT 259
+P I T++ L L DN I+ P L +L RL+L NNQL+ LP G+ LT
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 86
Query: 260 NLANFDASTNFLE----GDLSEVRFLTNL 284
L + N L+ G ++ LT++
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 112 NCVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++
Sbjct: 13 QCMELNFYKIPDNLPFSTKNLDLS-FNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIE 68
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
D + L+ L+ L LT I L+ L L + N++
Sbjct: 69 DGAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 119
Query: 231 IGNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTNFLEG 273
IG+L L L + +N + S KLP NLTNL + D S+N ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 112 NCVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++
Sbjct: 15 QCMELNFYKIPDNLPFSTKNLDLS-FNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIE 70
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
D + L+ L+ L LT I L+ L L + N++
Sbjct: 71 DGAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP 121
Query: 231 IGNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTNFLEG 273
IG+L L L + +N + S KLP NLTNL + D S+N ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N+LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N+LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N+LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N+LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 135 SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194
S N L+HL + S FS FP + + +++ ++ D + L+ L+ L L
Sbjct: 37 SFNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIEDGAYQ---------SLSHLSTLIL 84
Query: 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL-SGKLPV 253
T I L+ L L + N++ IG+L L L + +N + S KLP
Sbjct: 85 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 144
Query: 254 GLRNLTNLANFDASTNFLEG 273
NLTNL + D S+N ++
Sbjct: 145 YFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 15/164 (9%)
Query: 112 NCVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++
Sbjct: 15 QCMELNFYKIPDNLPFSTKNLDLS-WNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIE 70
Query: 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSE 230
D + L+ L+ L LT I L+ L L + N++
Sbjct: 71 DGAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 121
Query: 231 IGNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTNFLEG 273
IG+L L L + +N + S KLP NLTNL + D S+N ++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 113 CVKLQYLDLGNNV-FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171
C++L + + +N+ FS ++S N L+HL + S FS FP + + +++ ++ D
Sbjct: 15 CMELNFYKIPDNLPFSTKNLDLS-WNPLRHLG-SYSFFS--FPELQVLDLSRCEIQTIED 70
Query: 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
+ L+ L+ L LT I L+ L L + N++ I
Sbjct: 71 GAYQ---------SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 121
Query: 232 GNLVKLWRLELYNNQL-SGKLPVGLRNLTNLANFDASTNFLEG 273
G+L L L + +N + S KLP NLTNL + D S+N ++
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 139 LQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS 198
L+HL+L +G S + ++ + N+ NL SL +G N FP N L L N +
Sbjct: 104 LKHLFLIQTGISNL-EFIPVHNLENLESLYLGSNHISSIKFPKDFPARN-LKVLDFQNNA 161
Query: 199 IDGQIPVEIGNLTELINLEL--SDNNISG 225
I ++ +L + INL L + NN+ G
Sbjct: 162 IHYISREDMRSLEQAINLSLNFNGNNVKG 190
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 403 EVNIIDIALNQIEG-PITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461
++ II I N ++ P+ ++ K L L YN+L G+LP L + L NQ
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364
Query: 462 LTGKIPA 468
+T +IPA
Sbjct: 365 IT-EIPA 370
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAEL 302
YNN + + L+ L + N LEG L L +L L NQ + E+PA
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANF 372
Query: 303 GKFKKLV-NLSLYTNKL 318
F + V NLS NKL
Sbjct: 373 CGFTEQVENLSFAHNKL 389
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 253 VGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312
V + L+ + NF+ + ++ L+ ++F TNL L L NQ S P L KL LS
Sbjct: 35 VSQKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91
Query: 313 LYTNKL 318
+ N+L
Sbjct: 92 VNRNRL 97
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 232 GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG-DLSEVRFLTNLVTLQLF 290
G L L L+L +NQL LP+ + L L D S N L L +R L L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLT 319
N+ P L KL LSL N LT
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSL-GFNSLYGEISKDLNNCVKLQYLDLGNNV 125
+++IE+S ++ + D L LH++ + N+L + N LQYL L +N
Sbjct: 56 LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL-LISNT 114
Query: 126 FSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK 185
P++ ++ LQ + L++ N+ ++ N F F ++
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD--------------NINIHTIERNSFVGLSFESVILW 160
Query: 186 LNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEI 231
LNK + N + +G T+L L LSDNN E+P+++
Sbjct: 161 LNKNGIQEIHNSAFNG---------TQLDELNLSDNNNLEELPNDV 197
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL-RNLTNLA 262
P +LT+L L L+ N ++ L KL L L+ NQL +P+G+ NL +L
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLT 115
Query: 263 NFDASTNFLEGDLSEVRFLTNLV 285
+ N + + S++ +L N +
Sbjct: 116 HIYLFNNPWDCECSDILYLKNWI 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,137,377
Number of Sequences: 62578
Number of extensions: 549166
Number of successful extensions: 1532
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 253
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)