Query 012103
Match_columns 471
No_of_seqs 326 out of 4427
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-58 6.9E-63 499.6 38.1 449 15-469 21-471 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.5E-50 2.1E-54 433.3 28.6 402 64-468 139-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-38 3.7E-43 297.8 7.9 389 66-458 53-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.8E-37 1E-41 288.2 5.6 366 65-435 78-448 (873)
5 KOG0444 Cytoskeletal regulator 100.0 6.3E-38 1.4E-42 296.3 -3.5 362 92-463 9-375 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 8.3E-38 1.8E-42 281.2 -10.4 385 66-468 69-544 (565)
7 KOG0444 Cytoskeletal regulator 100.0 9E-36 1.9E-40 281.8 -4.9 363 65-439 7-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 5.7E-35 1.2E-39 262.9 -10.7 389 66-471 46-525 (565)
9 KOG0618 Serine/threonine phosp 99.9 3.9E-30 8.4E-35 254.0 -2.8 379 67-461 47-487 (1081)
10 KOG0618 Serine/threonine phosp 99.9 6.9E-30 1.5E-34 252.2 -6.5 378 66-463 22-465 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.5E-24 3.3E-29 236.8 27.2 358 65-437 532-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.1E-24 4.5E-29 235.8 27.4 305 92-412 591-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.7E-26 1.9E-30 203.6 -4.2 385 64-460 66-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 1.6E-22 3.5E-27 206.0 16.8 266 137-447 201-466 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 1.9E-21 4.2E-26 198.2 18.2 265 115-423 202-466 (788)
16 PRK15370 E3 ubiquitin-protein 99.9 1.4E-20 3E-25 193.1 18.3 333 19-391 59-428 (754)
17 KOG4237 Extracellular matrix p 99.8 4.5E-23 9.7E-28 186.2 -3.8 382 69-463 50-477 (498)
18 PRK15370 E3 ubiquitin-protein 99.8 5.2E-20 1.1E-24 188.9 14.2 247 162-439 178-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.4E-20 2.9E-25 179.4 4.3 277 166-462 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 1.5E-20 3.2E-25 179.1 4.1 279 141-438 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2.3E-20 5.1E-25 150.0 -4.8 165 279-449 30-195 (264)
22 KOG0617 Ras suppressor protein 99.7 1.7E-19 3.6E-24 145.1 -6.6 154 258-415 32-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.4E-14 3E-19 148.4 12.9 149 19-174 368-527 (623)
24 COG4886 Leucine-rich repeat (L 99.4 1.1E-12 2.3E-17 128.7 8.0 197 239-443 97-294 (394)
25 KOG0532 Leucine-rich repeat (L 99.3 5.5E-14 1.2E-18 133.6 -4.0 177 262-447 78-254 (722)
26 COG4886 Leucine-rich repeat (L 99.3 6.8E-12 1.5E-16 123.0 9.1 193 118-343 97-290 (394)
27 KOG3207 Beta-tubulin folding c 99.2 6.3E-13 1.4E-17 122.7 -1.5 207 112-319 119-339 (505)
28 PLN03150 hypothetical protein; 99.2 2.3E-11 4.9E-16 125.0 9.3 112 356-467 420-532 (623)
29 KOG0532 Leucine-rich repeat (L 99.2 5.7E-13 1.2E-17 126.8 -3.3 168 216-391 80-247 (722)
30 KOG3207 Beta-tubulin folding c 99.2 2.4E-12 5.1E-17 118.9 0.2 160 232-391 118-284 (505)
31 KOG1259 Nischarin, modulator o 99.2 5.3E-12 1.1E-16 111.2 1.9 128 306-439 284-412 (490)
32 KOG1909 Ran GTPase-activating 99.1 8.1E-12 1.8E-16 112.4 1.0 245 207-462 26-310 (382)
33 KOG1909 Ran GTPase-activating 99.1 7E-12 1.5E-16 112.8 0.5 135 256-390 154-310 (382)
34 KOG1259 Nischarin, modulator o 99.1 1.4E-11 3.1E-16 108.5 2.2 133 279-417 281-414 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.8E-15 98.1 4.4 105 91-199 20-125 (175)
36 KOG4658 Apoptotic ATPase [Sign 99.0 1.3E-10 2.7E-15 122.2 3.8 86 86-172 567-652 (889)
37 PF14580 LRR_9: Leucine-rich r 99.0 4.5E-10 9.7E-15 94.8 5.9 126 327-458 16-148 (175)
38 KOG0531 Protein phosphatase 1, 99.0 5.8E-11 1.3E-15 116.7 -1.3 223 233-467 93-322 (414)
39 KOG4658 Apoptotic ATPase [Sign 99.0 6E-10 1.3E-14 117.1 5.7 249 157-410 566-827 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.9E-14 75.5 3.0 61 402-462 1-61 (61)
41 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.3E-14 73.2 3.0 60 379-438 2-61 (61)
42 PF08263 LRRNT_2: Leucine rich 98.8 8.9E-09 1.9E-13 65.3 4.2 40 22-61 2-43 (43)
43 KOG0531 Protein phosphatase 1, 98.8 8.4E-10 1.8E-14 108.5 -1.5 196 160-367 70-268 (414)
44 KOG2982 Uncharacterized conser 98.5 1.7E-08 3.6E-13 89.3 -0.2 209 86-296 41-263 (418)
45 KOG2120 SCF ubiquitin ligase, 98.5 1.1E-09 2.3E-14 96.7 -8.5 205 65-271 159-375 (419)
46 KOG2982 Uncharacterized conser 98.5 4.2E-08 9E-13 86.9 1.2 222 163-384 46-285 (418)
47 KOG2120 SCF ubiquitin ligase, 98.4 3.9E-09 8.4E-14 93.3 -6.2 84 212-295 186-273 (419)
48 COG5238 RNA1 Ran GTPase-activa 98.4 3.7E-08 7.9E-13 86.1 -1.5 160 208-367 89-285 (388)
49 KOG1859 Leucine-rich repeat pr 98.4 1.7E-08 3.7E-13 99.4 -4.2 176 277-463 104-292 (1096)
50 KOG1859 Leucine-rich repeat pr 98.3 8.5E-09 1.9E-13 101.5 -6.9 178 228-415 102-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.6E-12 83.0 0.4 245 207-463 26-316 (388)
52 KOG4579 Leucine-rich repeat (L 98.2 1.1E-07 2.5E-12 74.5 -2.0 83 330-415 53-136 (177)
53 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.8E-11 55.4 2.7 36 427-463 2-37 (44)
54 KOG4579 Leucine-rich repeat (L 98.1 2.6E-07 5.7E-12 72.5 -1.9 132 284-419 29-163 (177)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 50.4 3.7 35 404-439 3-37 (44)
56 KOG3665 ZYG-1-like serine/thre 97.8 8.4E-06 1.8E-10 84.1 1.8 135 162-298 122-266 (699)
57 PRK15386 type III secretion pr 97.8 9.7E-05 2.1E-09 70.5 8.3 135 302-460 48-187 (426)
58 KOG1644 U2-associated snRNP A' 97.7 6.7E-05 1.5E-09 63.3 6.0 105 91-197 43-150 (233)
59 KOG1644 U2-associated snRNP A' 97.7 9.3E-05 2E-09 62.5 6.6 85 114-200 42-126 (233)
60 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.5E-10 83.1 1.5 149 114-265 122-281 (699)
61 PRK15386 type III secretion pr 97.7 0.00016 3.5E-09 69.1 8.8 32 233-268 50-81 (426)
62 KOG4341 F-box protein containi 97.3 4.3E-06 9.3E-11 77.8 -6.9 83 91-173 139-227 (483)
63 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.5E-08 53.4 7.2 97 351-452 32-128 (129)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0023 5E-08 51.6 8.0 13 302-314 31-43 (129)
65 KOG4341 F-box protein containi 97.1 1.3E-05 2.8E-10 74.7 -6.3 85 305-389 345-437 (483)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00068 1.5E-08 59.8 3.3 12 113-124 64-75 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00054 1.2E-08 60.4 1.3 38 210-247 64-103 (260)
68 KOG2123 Uncharacterized conser 96.5 0.00028 6.1E-09 62.6 -2.3 66 376-443 39-105 (388)
69 KOG1947 Leucine rich repeat pr 96.3 0.00033 7.2E-09 70.7 -3.6 186 113-308 187-389 (482)
70 PF00560 LRR_1: Leucine Rich R 96.3 0.0014 3E-08 34.5 0.4 19 451-470 1-19 (22)
71 KOG1947 Leucine rich repeat pr 96.1 0.00092 2E-08 67.4 -1.6 15 351-365 359-373 (482)
72 KOG2123 Uncharacterized conser 96.0 0.00015 3.2E-09 64.3 -6.4 58 90-150 19-76 (388)
73 PF00560 LRR_1: Leucine Rich R 95.4 0.0073 1.6E-07 31.7 0.9 11 405-415 3-13 (22)
74 KOG4308 LRR-containing protein 95.3 0.00023 5E-09 70.5 -9.0 181 260-440 88-304 (478)
75 KOG4308 LRR-containing protein 94.6 0.00044 9.6E-09 68.5 -9.2 203 236-438 88-330 (478)
76 PF13504 LRR_7: Leucine rich r 94.5 0.02 4.3E-07 27.8 1.1 16 451-467 2-17 (17)
77 smart00370 LRR Leucine-rich re 93.7 0.05 1.1E-06 29.8 1.7 19 450-469 2-20 (26)
78 smart00369 LRR_TYP Leucine-ric 93.7 0.05 1.1E-06 29.8 1.7 19 450-469 2-20 (26)
79 PF13516 LRR_6: Leucine Rich r 90.3 0.12 2.6E-06 27.6 0.7 14 427-440 3-16 (24)
80 KOG0473 Leucine-rich repeat pr 86.7 0.017 3.6E-07 50.3 -6.5 84 64-150 41-124 (326)
81 smart00370 LRR Leucine-rich re 85.8 0.69 1.5E-05 25.1 1.9 12 404-415 4-15 (26)
82 smart00369 LRR_TYP Leucine-ric 85.8 0.69 1.5E-05 25.1 1.9 12 404-415 4-15 (26)
83 smart00364 LRR_BAC Leucine-ric 85.6 0.58 1.3E-05 25.5 1.4 17 451-468 3-19 (26)
84 KOG0473 Leucine-rich repeat pr 85.5 0.03 6.5E-07 48.8 -5.6 84 353-439 41-124 (326)
85 KOG3864 Uncharacterized conser 84.3 0.18 3.9E-06 43.1 -1.4 80 236-315 102-185 (221)
86 KOG3864 Uncharacterized conser 82.0 0.51 1.1E-05 40.5 0.4 80 356-435 103-185 (221)
87 KOG4242 Predicted myosin-I-bin 74.5 17 0.00037 35.7 8.1 226 213-439 216-481 (553)
88 smart00365 LRR_SD22 Leucine-ri 70.4 4.1 8.9E-05 22.3 1.8 14 450-463 2-15 (26)
89 KOG4242 Predicted myosin-I-bin 64.8 38 0.00082 33.4 8.2 17 115-131 215-231 (553)
90 smart00368 LRR_RI Leucine rich 63.3 5 0.00011 22.2 1.3 13 403-415 3-15 (28)
91 KOG3763 mRNA export factor TAP 45.5 11 0.00024 37.7 1.3 62 353-416 217-284 (585)
92 KOG3763 mRNA export factor TAP 43.0 13 0.00028 37.3 1.4 36 89-124 217-254 (585)
93 smart00367 LRR_CC Leucine-rich 40.8 21 0.00045 19.2 1.4 15 449-463 1-16 (26)
94 PF07172 GRP: Glycine rich pro 22.4 86 0.0019 23.6 2.5 13 1-13 1-13 (95)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-58 Score=499.56 Aligned_cols=449 Identities=32% Similarity=0.532 Sum_probs=363.8
Q ss_pred hccCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcE
Q 012103 15 PFFTCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHK 94 (471)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~ 94 (471)
..++...++|+.||++||+++.+|. ..+.+|..+.+||.|.||.|+. .++|+.|+|+++++.|.++.. +..+++|++
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~ 97 (968)
T PLN00113 21 LNFSMLHAEELELLLSFKSSINDPL-KYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSA-IFRLPYIQT 97 (968)
T ss_pred HHccCCCHHHHHHHHHHHHhCCCCc-ccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChH-HhCCCCCCE
Confidence 3445567899999999999997665 6679999888999999999986 679999999999999888765 999999999
Q ss_pred EeCCCCCCCcccccccc-CCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCC
Q 012103 95 LSLGFNSLYGEISKDLN-NCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173 (471)
Q Consensus 95 L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 173 (471)
|++++|.+.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+++..| ..++++++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCC-hHHhcCCCCCEEECccCc
Confidence 99999999988887654 899999999999999887663 457888899999888888777 778888888888888888
Q ss_pred CCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCc
Q 012103 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV 253 (471)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 253 (471)
+ ...+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++++++|++|++++|.+.+.+|.
T Consensus 176 l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 176 L-VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred c-cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 7 455678888888888888888888888888888888888888888888888888888888888888888888878888
Q ss_pred cccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCC
Q 012103 254 GLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEF 332 (471)
Q Consensus 254 ~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 332 (471)
.+.++++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 334 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC
Confidence 88888888888888888877665 67777888888888888887778777778888888888888877777777777888
Q ss_pred CEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccC
Q 012103 333 DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412 (471)
Q Consensus 333 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n 412 (471)
+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|
T Consensus 335 ~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 335 QVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 88888888877777777777777888888877777777777777777777777777777777777777777777777777
Q ss_pred ccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 413 QIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
++++.+|..+..++.|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 415 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~ 471 (968)
T PLN00113 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471 (968)
T ss_pred EeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc
Confidence 777777777777777777777777777777766666666666666666666666654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.5e-50 Score=433.30 Aligned_cols=402 Identities=32% Similarity=0.563 Sum_probs=255.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
...++.|+|++|.+.+.+|.. ++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..| .+.++++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 345777888888777666655 7777777777777777777777777777777777777777776666 66777777777
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNN 222 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 222 (471)
++++|.+.+..| ..+.++++|++|++++|.+ ...+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus 218 ~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 218 YLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred ECcCCccCCcCC-hhHhcCCCCCEEECcCcee-ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 777777776666 5666677777777776666 33455666666666666666666665566666666666666666666
Q ss_pred CCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCc------
Q 012103 223 ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFS------ 295 (471)
Q Consensus 223 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~------ 295 (471)
+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 555555555555555555555555555555555555555555555555444333 3333444444444444433
Q ss_pred ------------------cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC----
Q 012103 296 ------------------GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR---- 353 (471)
Q Consensus 296 ------------------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~---- 353 (471)
+.+|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+++.+|..+..+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 3334444444455555555555554444444444444455554444444444333333
Q ss_pred -------------------CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcc
Q 012103 354 -------------------GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQI 414 (471)
Q Consensus 354 -------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~ 414 (471)
++|+.|++++|++.+.+|..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 456 ~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 456 MLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 3455555555556566666666677777777777777777777777777777777777777
Q ss_pred ccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 415 EGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 415 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++.+|..+.++++|+.|++++|+++|.+|..+..+++|+.+++++|+++|.||+
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 777777777777777777777777777777777777777777777777777775
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-38 Score=297.83 Aligned_cols=389 Identities=19% Similarity=0.162 Sum_probs=328.1
Q ss_pred CEEEEEcCCCCCccccCcccccCC--CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQL--QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+-+|.+++.+. .+....+..+ +.-+.|++++|++....+..|.++++|+++++.+|.++..+.......+|+.|+
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 3455666665554 2211112221 245679999999998889999999999999999999985544555666799999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
|.+|.++.+.. ..++.++.|+.|||+.|.++..+. ..+..-.++++|++++|.++..-...|..+.+|..|.|+.|.+
T Consensus 132 L~~N~I~sv~s-e~L~~l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 132 LRHNLISSVTS-EELSALPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeccccccccH-HHHHhHhhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence 99999998877 889999999999999999954432 3445557899999999999976677899999999999999999
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL 302 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l 302 (471)
+...+..|.++++|+.|++..|++.-.-...|.++++|+.+.+..|.+...-. .|..+.++++|++..|+++..-..++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 95555677779999999999999984445678999999999999999986555 78889999999999999997667788
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcE
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 382 (471)
.++++|+.|++++|.+...-+..+..++.|+.|+|++|+++..-+..+..+..|+.|+++.|.+...-...|..+.+|+.
T Consensus 290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 99999999999999999888888999999999999999999777778888999999999999999777778899999999
Q ss_pred EEccCCcCcccccc---cccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEecc
Q 012103 383 FRVSNNSLKGTVPA---GIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLN 458 (471)
Q Consensus 383 L~L~~n~~~~~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 458 (471)
|||++|.+...|.+ .|.+++.|+.|++.+|++..+.-..|.++.+|+.|+|.+|.|...-|.+|..+ .|+.|.+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 99999999866543 47789999999999999997777899999999999999999988888888887 78877665
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-37 Score=288.17 Aligned_cols=366 Identities=22% Similarity=0.225 Sum_probs=321.5
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++.||+++|.+. .+....|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.|+..-. .+..++.||.||
T Consensus 78 ~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45688999999998 666666899999999999999997 677766666779999999999987666 889999999999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
|+.|.++.... ..+..-.++++|+|+.|+|+..+ ...|..+.+|..|.+++|.++...+..|.++++|+.|+|..|.+
T Consensus 156 LSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 156 LSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhchhhcccC-CCCCCCCCceEEeeccccccccc-cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce
Confidence 99999987665 77888899999999999996544 56788888999999999999966667888899999999999998
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL 302 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l 302 (471)
.-.---.|.++++|+.|.+..|.+...-...|-.+.++++|++..|++...-. ++-++++|+.|++++|.|....++.+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 73335578899999999999999987777788899999999999999986665 88899999999999999999889999
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccc---hhhhcCCC
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP---ATYANCLT 379 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~ 379 (471)
..+++|++|+|++|.++...+..+..+..|+.|+|+.|.++..-...+..+.+|+.|++++|.++..+. ..|..+++
T Consensus 314 sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~ 393 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS 393 (873)
T ss_pred hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh
Confidence 999999999999999997778889999999999999999985545567789999999999999886554 45788999
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
|+.|++.+|+++.....+|.+++.|+.|||.+|.|..+-|..|..+ .|..|.+..
T Consensus 394 LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 394 LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 9999999999995555789999999999999999999999999988 888887754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=6.3e-38 Score=296.27 Aligned_cols=362 Identities=25% Similarity=0.367 Sum_probs=265.8
Q ss_pred CcEEeCCCCCCC-ccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEcc
Q 012103 92 LHKLSLGFNSLY-GEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170 (471)
Q Consensus 92 L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 170 (471)
.|-.|+++|.++ +..|..+..++.++.|.|...++...+..++++.+|++|.+.+|++.... ..+..++.|+.+.+.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHhhh
Confidence 344444444444 23444445555555555555544433335555555555555555555443 356666677777777
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCc-cccCCCCCCeEeeccccccc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPS-EIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~ 249 (471)
+|++....+|..+..+..|+.|++++|++. +.|..+..-+++-+|+|++|+|. .+|. .+-++..|-.|++++|++.
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-
Confidence 777766677777777777888888887777 56777777777778888888777 4444 4456777777888888776
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCc-cccchhccCCCCCCEEEcccCcCcccCchhhc
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFS-GEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (471)
.+|..+..+.+|+.|.+++|.+...-- .+..+++|+.|.+++.+-+ ..+|.++..+.+|+.+|++.|.+. .+|+.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 667777777778888888877653222 4555677777888776544 467888888888888999988887 7888888
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCE
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNI 406 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~ 406 (471)
++.+|+.|+|++|+++ .+........++++|+++.|+++ .+|..++.++.|+.|+..+|+++ +-||.+++.+..|++
T Consensus 243 ~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 8888999999999887 55555566678889999999888 78888888899999988888876 457888888999999
Q ss_pred eecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+..++|.+. .+|+.++.|..|+.|.|++|++. ++|++|--++.|++||+..|+-.
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 999988887 78889999999999999999988 88999988899999999988755
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-38 Score=281.18 Aligned_cols=385 Identities=24% Similarity=0.365 Sum_probs=279.5
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.++.+++.++.+. ++|++ ++.+..++.++.++|++. .+|..+..+.+|+.+++++|.+...++.++.+-.|+.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~a-ig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAA-IGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHH-HHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 3566777777776 66665 777777777777777776 56777777788888888888887777777778888888888
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|++...++ .+.++.+|..+++.+|++ ...|....+++.|++++...|-+. .+|+.++.+.+|..|++.+|++.
T Consensus 146 ~N~i~slp~--~~~~~~~l~~l~~~~n~l--~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 146 NNQISSLPE--DMVNLSKLSKLDLEGNKL--KALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR- 219 (565)
T ss_pred ccccccCch--HHHHHHHHHHhhccccch--hhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-
Confidence 887776553 677777888888888877 344555555788888888777776 67888888888888888888887
Q ss_pred cCCccccCCCCCCeEeeccccccccCCcc-ccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
.+| .|.+|..|+++.++.|.+. .+|.. ..+++++..||+..|++...+..+.-+.+|++||+++|.++ .+|..+++
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 566 6788888888888888887 44444 45888889999999998866667777888999999999998 66778888
Q ss_pred CCCCCEEEcccCcCcc-------------------------------------cCch-h---hcCCCC------------
Q 012103 305 FKKLVNLSLYTNKLTG-------------------------------------ALPQ-E---LGSWAE------------ 331 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~-------------------------------------~~~~-~---~~~~~~------------ 331 (471)
+ +|+.|.+.+|.+.. ..+. . .....+
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 88888888886531 0000 0 000111
Q ss_pred --------------CCEEeccCCccc-----------------------ccCchhhcCCCCCceeeccCCccccccchhh
Q 012103 332 --------------FDFIDVSENLLT-----------------------GPIPPDMCKRGTMRDLLMLQNKFTGEIPATY 374 (471)
Q Consensus 332 --------------L~~L~L~~n~l~-----------------------~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~ 374 (471)
...++++.|++. +.+|..++.+++|..|++++|.+. .+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 234444444442 122233445566666666666555 566666
Q ss_pred hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCE
Q 012103 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVV 454 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 454 (471)
+.+..|+.++++.|+|. .+|.++.....++.+-.++|++....|..+.++..|..|++.+|.+. .+|..++++++|++
T Consensus 455 ~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeE
Confidence 66666777777777666 56666666666666666667777666667899999999999999999 89999999999999
Q ss_pred EeccCCcCcccCCC
Q 012103 455 IKLNNNQLTGKIPA 468 (471)
Q Consensus 455 L~l~~n~~sg~ip~ 468 (471)
|+++||+|. .|.
T Consensus 533 LeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 533 LELDGNPFR--QPR 544 (565)
T ss_pred EEecCCccC--CCH
Confidence 999999998 554
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=9e-36 Score=281.76 Aligned_cols=363 Identities=26% Similarity=0.377 Sum_probs=321.2
Q ss_pred CCEEEEEcCCCCCccc-cCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGT-LPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~-l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
.-|+.+|+++|.++|. +|.+ ...+++++.|.|...++. .+|..++.+.+|++|.+++|++......+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 4589999999999954 5654 999999999999988886 789999999999999999999998888999999999999
Q ss_pred ccCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCc-cccCCCCCcEEEcccC
Q 012103 144 LNLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPV-EIGNLTELINLELSDN 221 (471)
Q Consensus 144 l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n 221 (471)
+.+|++.. .+| ..+..+..|..|+|++|++ .+.|..+..-+++-+|++++|++. .+|. -|.+++.|-.|+|++|
T Consensus 85 ~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL--~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 85 VRDNNLKNSGIP-TDIFRLKDLTILDLSHNQL--REVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred hhccccccCCCC-chhcccccceeeecchhhh--hhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccc
Confidence 99999863 345 6888999999999999998 567999999999999999999998 5554 5678899999999999
Q ss_pred cCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCc--cccccCCCCCCCCEEEccCCcCccccc
Q 012103 222 NISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLE--GDLSEVRFLTNLVTLQLFKNQFSGEVP 299 (471)
Q Consensus 222 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~ 299 (471)
.+. .+|..+..+..|++|.+++|.+...--..+..+++|+.|.+++.+-+ ..++.+..+.+|..++++.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 998 78888999999999999999886433344567788889999987654 23347888999999999999998 889
Q ss_pred hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc-ccchhhhcCC
Q 012103 300 AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG-EIPATYANCL 378 (471)
Q Consensus 300 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~ 378 (471)
+.+..+++|+.|+|++|+++ .+....+.+.+|+.|+++.|+++ .+|.+++.++.|+.|...+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 99999999999999999998 55556677889999999999998 899999999999999999998764 3788999999
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 379 TLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
.|+++...+|.+. .+|+++..|..|+.|.|+.|++. .+|+.+.-++.|..|++..|.--
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 9999999999998 89999999999999999999987 68999999999999999999665
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=5.7e-35 Score=262.92 Aligned_cols=389 Identities=24% Similarity=0.368 Sum_probs=329.1
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.+..+.+++|.+. .+..+ +.++..|.++++++|++. .+|.+++.+..++.++.++|+++..++.+..+.+|+.++++
T Consensus 46 ~l~~lils~N~l~-~l~~d-l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLRED-LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHh-hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 3567899999988 66555 899999999999999997 67889999999999999999999888899999999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|.+....+ .++.+..|+.++..+|++ ...|..+..+.++..+++.+|++....|..+ .++.|++++...|-++
T Consensus 123 ~n~~~el~~--~i~~~~~l~dl~~~~N~i--~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 123 SNELKELPD--SIGRLLDLEDLDATNNQI--SSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccceeecCc--hHHHHhhhhhhhcccccc--ccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-
Confidence 999997765 889999999999999998 5579999999999999999999995544444 4999999999999887
Q ss_pred cCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
.+|+.++.+.+|..|++..|++. .+| .|.++..|.+++++.|++.-.+. ....++++..||+..|++. +.|+.+.-
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 89999999999999999999998 667 68999999999999999985555 5668999999999999999 88999999
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc----------------------------------------
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG---------------------------------------- 344 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~---------------------------------------- 344 (471)
+.+|++||+++|.++ ..|..++++ +|++|-+.+|.+..
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 999999999999999 678889998 99999999998731
Q ss_pred ------------------------cCchhhcCCC---CCceeeccCCcccc-----------------------ccchhh
Q 012103 345 ------------------------PIPPDMCKRG---TMRDLLMLQNKFTG-----------------------EIPATY 374 (471)
Q Consensus 345 ------------------------~~p~~~~~~~---~L~~L~l~~n~~~~-----------------------~~~~~~ 374 (471)
.+|...+... -....+++.|++.. -+|..+
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l 431 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLEL 431 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHH
Confidence 1111111111 13455555555441 344556
Q ss_pred hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCE
Q 012103 375 ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVV 454 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 454 (471)
+.+++|..|++++|-+. .+|..++.+..|+.++++.|+|. .+|+.++....++.+-.++|+++...|..+..+.+|++
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 67888999999998888 78888888888999999999887 67888888888888888889999777777999999999
Q ss_pred EeccCCcCcccCCCCCC
Q 012103 455 IKLNNNQLTGKIPASIY 471 (471)
Q Consensus 455 L~l~~n~~sg~ip~~~~ 471 (471)
|||.+|.+. .||..+|
T Consensus 510 LDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILG 525 (565)
T ss_pred eccCCCchh-hCChhhc
Confidence 999999999 8998664
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=3.9e-30 Score=253.98 Aligned_cols=379 Identities=25% Similarity=0.307 Sum_probs=213.9
Q ss_pred EEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccC
Q 012103 67 VQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNL 146 (471)
Q Consensus 67 v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 146 (471)
+..||++++.+. .+|.. +..+++|+.|+++.|.+. ..|.+..++.+|+++.|.+|.+...+..+..+++|++|++++
T Consensus 47 L~~l~lsnn~~~-~fp~~-it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQ-ITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eEEeeccccccc-cCCch-hhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 677888877765 66654 777777777777777765 445666666677777777766665555666666677776666
Q ss_pred CCCcccCCc--------------------------------------ccccCCCCCcE-EEccCCCCCCCCCCccccCCC
Q 012103 147 SGFSGVFPW--------------------------------------MSLGNMTNLVS-LSVGDNPFDPTPFPDQVVKLN 187 (471)
Q Consensus 147 n~l~~~~~~--------------------------------------~~~~~l~~L~~-L~l~~n~~~~~~~~~~l~~l~ 187 (471)
|++...++. .......++++ |+|++|.+. -..+..+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~----~~dls~~~ 199 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME----VLDLSNLA 199 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----hhhhhhcc
Confidence 655432210 00011123333 666666652 12233444
Q ss_pred CCCEEEcccccCcc--------------------cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc
Q 012103 188 KLNWLYLTNCSIDG--------------------QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 188 ~L~~L~l~~n~l~~--------------------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+|+.+....|++.. ..+. ..-.+|+.+++++|++. .+|+++..+.+|+.+....|.+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence 45555444444431 1110 11124555666665555 3455555566666666666655
Q ss_pred cccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC-CC-CCCEEEcccCcCcccCch-
Q 012103 248 SGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK-FK-KLVNLSLYTNKLTGALPQ- 324 (471)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-~~-~L~~L~L~~n~l~~~~~~- 324 (471)
. .+|..+...++|+.+.+.+|.++-.++.....++|++|++..|++. .+|+.+.. .. +++.+..+.|++. ..|.
T Consensus 277 ~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~ 353 (1081)
T KOG0618|consen 277 V-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSY 353 (1081)
T ss_pred H-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccc
Confidence 3 4555555555566666666655555555555666666666666665 33332211 11 1344444444443 1121
Q ss_pred hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCC
Q 012103 325 ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEV 404 (471)
Q Consensus 325 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L 404 (471)
.-...+.|+.|++.+|.++...-+.+.++..|+.|++++|++.......+.++..|+.|+|++|+++ .+|..+..++.|
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L 432 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL 432 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence 1122345666666777666555555666667777777777666333345566667777777777776 666666667777
Q ss_pred CEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 405 NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 405 ~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
++|...+|++. ..| .+..++.|+.+|++.|+++...-..-...++|++||++||.
T Consensus 433 ~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 433 HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77777777766 344 56667777777777777754322222233667777777765
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=6.9e-30 Score=252.24 Aligned_cols=378 Identities=24% Similarity=0.326 Sum_probs=268.6
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
.++.++++.|.+- ..|.+.+.+.-+|+.|++++|.+. ..|..+..++.|+.|.++.|.+...+..+.++.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheec
Confidence 3677788877765 444444555556999999998885 67888889999999999999998776688899999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE-------------------cccccCcccCCcc
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY-------------------LTNCSIDGQIPVE 206 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~-------------------l~~n~l~~~~~~~ 206 (471)
.|.+... | ..+..+.+|++|+++.|++ ..+|..+..+..+..+. +..|.+.+.++..
T Consensus 100 ~n~l~~l-P-~~~~~lknl~~LdlS~N~f--~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~ 175 (1081)
T KOG0618|consen 100 NNRLQSL-P-ASISELKNLQYLDLSFNHF--GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID 175 (1081)
T ss_pred cchhhcC-c-hhHHhhhcccccccchhcc--CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc
Confidence 8887754 4 6888999999999999998 44555555554444444 4444444555555
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccc--------------------cccCCccccCCCCCCEEeC
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQL--------------------SGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l--------------------~~~~~~~l~~l~~L~~L~l 266 (471)
+..+++ .+++.+|.+. .. .+..+.+|+.+....|++ +...+ -.-..+|+++++
T Consensus 176 i~~l~~--~ldLr~N~~~-~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~di 248 (1081)
T KOG0618|consen 176 IYNLTH--QLDLRYNEME-VL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDI 248 (1081)
T ss_pred hhhhhe--eeecccchhh-hh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeec
Confidence 555544 5777777665 11 122333333333333333 21111 012345666667
Q ss_pred CCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccC
Q 012103 267 STNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPI 346 (471)
Q Consensus 267 ~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 346 (471)
+.|++++.+.++..+.+|+.+...+|.++ .+|..+....+|+.|++.+|.+. .+|....+.+.|++|+|..|++. ..
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~l 325 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SL 325 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-cc
Confidence 76666655556666677777777777764 55666666666666666666666 66666777778888888888775 33
Q ss_pred chhh--------------------------cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-cccc
Q 012103 347 PPDM--------------------------CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGIW 399 (471)
Q Consensus 347 p~~~--------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~ 399 (471)
|..+ ...+.|+.|.+.+|.+++.....+.++++|+.|+|++|++. .+| ..+.
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~ 404 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLR 404 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHh
Confidence 3311 11345677888888888877777888899999999999998 454 4577
Q ss_pred CCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 400 GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 400 ~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
++..|+.|+||+|+++ .+|+.+.++..|+.|...+|++. ..| .+.++++|+++|++.|+++
T Consensus 405 kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 8889999999999998 57788889999999999999998 788 7889999999999999998
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.5e-24 Score=236.77 Aligned_cols=358 Identities=17% Similarity=0.172 Sum_probs=220.9
Q ss_pred CCEEEEEcCCCCCc-cccCcccccCCCCCcEEeCCCCC------CCccccccccCCC-CCCEEeCCCCcCCccCCCCCCC
Q 012103 65 SFVQEIELSNRNLK-GTLPFDSICQLQALHKLSLGFNS------LYGEISKDLNNCV-KLQYLDLGNNVFSGSFPEISSL 136 (471)
Q Consensus 65 ~~v~~L~L~~~~l~-g~l~~~~~~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~l~~l 136 (471)
..|+.+.+....+. -.+...+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+...+..+ ..
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 34555555433332 12444557888888888886543 2334566666664 5888888888776554444 46
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINL 216 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 216 (471)
.+|+.|++.++.+.... ..+..+++|+.|+++++.. ...+| .+..+++|+.|++++|.....+|..+..+++|+.|
T Consensus 611 ~~L~~L~L~~s~l~~L~--~~~~~l~~Lk~L~Ls~~~~-l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLW--DGVHSLTGLRNIDLRGSKN-LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCccccccc--cccccCCCCCEEECCCCCC-cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 78888888888776532 4567778888888877653 23334 36677788888888777666777777888888888
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc-
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS- 295 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~- 295 (471)
++++|...+.+|..+ ++++|++|++++|...+.+|.. .++|++|++++|.+...+.. ..+++|++|++.++...
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc-ccccccccccccccchhh
Confidence 888765555666654 6777888888777654444432 35677777777776533222 24566777766653321
Q ss_pred ------cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 296 ------GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 296 ------~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
...+......++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 0111112223566666666666555666666666667777766664434555544 456666666666644434
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
+|.. .++|+.|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 4332 245666666666666 556666666666666666644333455555666666666666653
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2.1e-24 Score=235.76 Aligned_cols=305 Identities=21% Similarity=0.215 Sum_probs=137.6
Q ss_pred CcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccC
Q 012103 92 LHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171 (471)
Q Consensus 92 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 171 (471)
|+.|++.++.+. .+|..+ ...+|++|++.++.+...+..+..+++|+.|+++++...+..| .+..+++|+.|++++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecC
Confidence 555555554443 334333 2345555555555554433344445555555555444333333 244455555555555
Q ss_pred CCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccC
Q 012103 172 NPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL 251 (471)
Q Consensus 172 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 251 (471)
|.. ...+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+. .+
T Consensus 667 c~~-L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~l 740 (1153)
T PLN03210 667 CSS-LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EF 740 (1153)
T ss_pred CCC-ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cc
Confidence 433 23344455555555555555544333444333 4455555555554433333321 234455555555543 33
Q ss_pred CccccCCCCCCEEeCCCCcCccc-------cc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 252 PVGLRNLTNLANFDASTNFLEGD-------LS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 252 ~~~l~~l~~L~~L~l~~n~~~~~-------~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
|..+ .+++|++|++.++..... .+ ....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|
T Consensus 741 P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 741 PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 3322 344444444443221100 00 11123445555555554444455555555555555555543333444
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+ .+++|+.|++++|.....+|.. ..+++.|++++|.+. .+|.++..+++|+.|++++|+--..+|..+..++.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 333 3445555555554333233321 234555555555554 34445555555555555553322234444444555
Q ss_pred CCEeecccC
Q 012103 404 VNIIDIALN 412 (471)
Q Consensus 404 L~~L~ls~n 412 (471)
|+.+++++|
T Consensus 895 L~~L~l~~C 903 (1153)
T PLN03210 895 LETVDFSDC 903 (1153)
T ss_pred CCeeecCCC
Confidence 555555554
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=8.7e-26 Score=203.58 Aligned_cols=385 Identities=21% Similarity=0.204 Sum_probs=231.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCC-CcCCccCC-CCCCCCCCCE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGN-NVFSGSFP-EISSLNELQH 141 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~l~~l~~L~~ 141 (471)
+...++|+|..|.|+ .+|+.+|..+++||.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+..+. .|.++..|+.
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 466799999999998 89999999999999999999999999999999999887776666 88887766 8889999999
Q ss_pred EEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc-cccCCCCCCEEEcccccCc------------ccCCcccc
Q 012103 142 LYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD-QVVKLNKLNWLYLTNCSID------------GQIPVEIG 208 (471)
Q Consensus 142 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~l~~n~l~------------~~~~~~l~ 208 (471)
|.+.-|++.-... ..+..+++|..|.+.+|.+ ..++. .+..+..++.+.+..|.+. ...|..++
T Consensus 145 LllNan~i~Cir~-~al~dL~~l~lLslyDn~~--q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 145 LLLNANHINCIRQ-DALRDLPSLSLLSLYDNKI--QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred HhcChhhhcchhH-HHHHHhhhcchhcccchhh--hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 9998888876665 7888889999999998887 33444 5667777777777766521 11122222
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeE---eeccccccccCC-ccccCCCCCCEEeCCCCcCccccc-cCCCCCC
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRL---ELYNNQLSGKLP-VGLRNLTNLANFDASTNFLEGDLS-EVRFLTN 283 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L---~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~ 283 (471)
...-..-..+.+..+..+.+..+.. .++.+ ..+.+...+..| ..|..+++|+.|++++|+++..-+ +|.....
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 2211111122222222111111110 11111 111111211222 224556666666666666655444 5556666
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccccc-----Cchhh--------
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP-----IPPDM-------- 350 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-----~p~~~-------- 350 (471)
+++|.+..|++...--..+.++..|++|+|.+|+++...|..|.....|..|++-.|.+.-. +.+|+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 66666666665543334455556666666666666655555555556666666655544210 00011
Q ss_pred ---cCCCCCceeeccCCcccc---ccchh---------hhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 351 ---CKRGTMRDLLMLQNKFTG---EIPAT---------YANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 351 ---~~~~~L~~L~l~~n~~~~---~~~~~---------~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.....++.+.+++..+.. ..|+. =..|+.+.++.=..|+....+|..+. ..-+.+.+.+|.++
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc
Confidence 112234445554433221 11111 12244454443233333335565443 23467888888888
Q ss_pred cccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCC
Q 012103 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNN 460 (471)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 460 (471)
.+|.. .+.+| .+++++|+++-.--..|.++++|.++-|++|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 45555 56677 8999999998666677888899999988876
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=1.6e-22 Score=206.04 Aligned_cols=266 Identities=24% Similarity=0.320 Sum_probs=154.9
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINL 216 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 216 (471)
..-..|+++.+.++.. | ..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|.. .++|+.|
T Consensus 201 ~~~~~LdLs~~~LtsL-P-~~l~--~~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCCcC-C-cchh--cCCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccC-cccCc---cccccee
Confidence 3455677777777643 3 2332 36777777777763 2343 2466777777777776 34432 3467777
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
++++|.+. .+|.. ...|+.|++++|.++ .+|. ..++|+.|++++|++.+.... ..+|+.|++++|.++
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~- 335 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT- 335 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCCC---cccccccccccCccc-
Confidence 77777766 34432 245667777777766 3443 235677777777766643221 234666667777666
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhc
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN 376 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 376 (471)
.+|.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|.+++ +|..
T Consensus 336 ~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l--- 400 (788)
T PRK15387 336 SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL--- 400 (788)
T ss_pred ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---
Confidence 34431 135667777777766 34432 235666666666665 45542 2356666666666663 3332
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhh
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEIS 447 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~ 447 (471)
.++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+.
T Consensus 401 ~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 245666666666666 34542 234566666666665 4566666666666666666666666666553
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.9e-21 Score=198.19 Aligned_cols=265 Identities=21% Similarity=0.265 Sum_probs=151.4
Q ss_pred CCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEc
Q 012103 115 KLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYL 194 (471)
Q Consensus 115 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 194 (471)
.-..|+++++.++..++.+. ++|+.|++.+|+++.... ..++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~-----lp~~Lk~LdLs~N~Lt--sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLT--SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC-----CCCCCcEEEecCCccC--cccCc---ccccceeec
Confidence 45566777776665444443 356667777766664321 2456677777776663 23322 346666667
Q ss_pred ccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccc
Q 012103 195 TNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD 274 (471)
Q Consensus 195 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 274 (471)
++|.+. .+|.. .++|+.|++++|.++ .+|.. .++|++|++++|.+++ +|.. ...|+.|++++|.+.+.
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSL 337 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccccc
Confidence 666665 33332 235666667776666 34432 3456677777766663 3332 23455666666666542
Q ss_pred cccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCC
Q 012103 275 LSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354 (471)
Q Consensus 275 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~ 354 (471)
+. ...+|++|++++|+++ .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++ .+|.. .+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PS 402 (788)
T ss_pred cc---cccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---cc
Confidence 21 1245667777777666 33432 235666666666666 34432 235666777777666 34432 24
Q ss_pred CCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..++.|+.|++++|++++..+..+.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 56667777776663 4432 234566667777766 5666666666777777777777666555553
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=1.4e-20 Score=193.08 Aligned_cols=333 Identities=19% Similarity=0.258 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCC----CCCCCCCCceeec----------------eEeCCCCCCEEEEEcCCCCCc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFS----SWVSNNHFCNFTG----------------ITCNSDSSFVQEIELSNRNLK 78 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~----~w~~~~~~c~~~g----------------v~c~~~~~~v~~L~L~~~~l~ 78 (471)
...++|.+.+++..+.+..|. ... .|...+++|.-+. |.|. .+.|+.+..-+....
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~--~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~--~~~vt~l~~~g~~~~ 134 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPA--YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG--GKSVTYTRVTESEQA 134 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCc--hhhccccccCCCCcccccCCcchhhheeeecCCceEEecC--CCccccccccccccc
Confidence 345789999999999997773 344 4999999997654 4454 355666655543222
Q ss_pred cccCcccccCCCCCcEEeC-----CCCCCCccc---ccc---c--cCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEcc
Q 012103 79 GTLPFDSICQLQALHKLSL-----GFNSLYGEI---SKD---L--NNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLN 145 (471)
Q Consensus 79 g~l~~~~~~~l~~L~~L~l-----~~~~~~~~~---~~~---~--~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 145 (471)
..- ..-..-..-+. ..+.-.+.. ..+ + +-..+.+.|+++++.++..+..+. ++|+.|+++
T Consensus 135 ~~~-----~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 135 SSA-----SGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILD 207 (754)
T ss_pred ccC-----CCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccc--cCCcEEEec
Confidence 110 00000000000 000000000 000 1 111356778887777776544443 467788888
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCC
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISG 225 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 225 (471)
+|.++.... .+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++.
T Consensus 208 ~N~LtsLP~--~l~--~nL~~L~Ls~N~Lt--sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~- 275 (754)
T PRK15370 208 NNELKSLPE--NLQ--GNIKTLYANSNQLT--SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS- 275 (754)
T ss_pred CCCCCcCCh--hhc--cCCCEEECCCCccc--cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-
Confidence 887775432 222 47888888888773 3455442 46788888888877 5666554 46888888888877
Q ss_pred cCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCC
Q 012103 226 EIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKF 305 (471)
Q Consensus 226 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 305 (471)
.+|..+. .+|++|++++|.++ .+|..+. +.|+.|++++|.++..+..+ .++|+.|++++|.+++ +|..+.
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~-- 345 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASLP-- 345 (754)
T ss_pred ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhhc--
Confidence 4666543 47888888888877 3444332 46778888888877543322 3678888888888874 565543
Q ss_pred CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhh----hcCCCCc
Q 012103 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY----ANCLTLQ 381 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~~~~L~ 381 (471)
++|+.|++++|.+. .+|..+. +.|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|..+ ..++.+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~ 418 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT 418 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc
Confidence 67888888888887 4665543 57888888888887 6776654 36888888888887 444433 3457788
Q ss_pred EEEccCCcCc
Q 012103 382 RFRVSNNSLK 391 (471)
Q Consensus 382 ~L~L~~n~~~ 391 (471)
.+++.+|.+.
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 8888888887
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-23 Score=186.18 Aligned_cols=382 Identities=18% Similarity=0.196 Sum_probs=257.5
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccC-
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNL- 146 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~- 146 (471)
.++-++.+++ .+|.+ --+.-..++|..|+|+..-+.+|+.+++||.|||++|.|+.+-| +|.+++.|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 3455556665 55543 12346779999999998778899999999999999999998888 899999998887777
Q ss_pred CCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC--
Q 012103 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS-- 224 (471)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-- 224 (471)
|+++.... ..|.++..|+-|.+..|++. -...+.+..++++..|.+.+|.+...-..+|..+.+++.+.+..|.+.
T Consensus 126 NkI~~l~k-~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 126 NKITDLPK-GAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred Cchhhhhh-hHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 88887665 89999999999999999883 334578889999999999999988443447888889999998887632
Q ss_pred ----------CcCCccccCCCCCCeEeeccccccccCCccccC-CCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccC
Q 012103 225 ----------GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRN-LTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFK 291 (471)
Q Consensus 225 ----------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~ 291 (471)
...|..+++.....-..+.+.++...-+..+.. +..+.+-..+.+...+..| .+..+++|+.|++++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 122333344443444444444443222222221 1122211222333333444 678889999999999
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc--
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE-- 369 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~-- 369 (471)
|++++.-+.+|....++++|.|..|++...-...+.++..|+.|+|.+|+++...|.+|.....|..|.+-.|.+.-.
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc
Confidence 999888788888888899999999988755555677888889999999998877777888888888888887755421
Q ss_pred ---cchhh-----------hcCCCCcEEEccCCcCcc---cccc---------cccCCCCCCEe-ecccCccccccchhh
Q 012103 370 ---IPATY-----------ANCLTLQRFRVSNNSLKG---TVPA---------GIWGLPEVNII-DIALNQIEGPITKDI 422 (471)
Q Consensus 370 ---~~~~~-----------~~~~~L~~L~L~~n~~~~---~~~~---------~~~~~~~L~~L-~ls~n~~~~~~~~~~ 422 (471)
+.+|+ +.-..++.+.+++..+.+ .-|+ +-..++.+.++ ..|+..+. .+|..+
T Consensus 364 l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~i 442 (498)
T KOG4237|consen 364 LAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGI 442 (498)
T ss_pred hHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCC
Confidence 11111 111234455555544431 1111 11223333333 33333333 344332
Q ss_pred hccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 423 ENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
. ..-.++++.+|.++ .+|.. .+..| .+|+++|+++
T Consensus 443 P--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 443 P--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred C--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 2 23457899999999 77777 56778 9999999998
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=5.2e-20 Score=188.92 Aligned_cols=247 Identities=23% Similarity=0.364 Sum_probs=162.5
Q ss_pred CCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEe
Q 012103 162 TNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLE 241 (471)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 241 (471)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|..+. ..|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt--sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT--TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC--cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35677888887773 3555442 47888888888887 4565543 47888888888877 5665543 3688888
Q ss_pred eccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc
Q 012103 242 LYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321 (471)
Q Consensus 242 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 321 (471)
+++|.+. .+|..+. ++|+.|++++|.+...+..+ .++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-A 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-c
Confidence 8888877 5565543 46788888888777433333 257788888888777 3444332 36777777777777 3
Q ss_pred CchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCC
Q 012103 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGL 401 (471)
Q Consensus 322 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 401 (471)
+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 45433 256777777777776 4665553 57777777777776 455544 256777777777777 4555443
Q ss_pred CCCCEeecccCccccccchhh----hccCCCCeeeCCCCcCc
Q 012103 402 PEVNIIDIALNQIEGPITKDI----ENAKALNLLFAEYNRLS 439 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~----~~l~~L~~L~l~~n~l~ 439 (471)
..|+.|++++|++. .+|..+ ..++.+..+++.+|.++
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35777777777776 344433 33466677777777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.4e-20 Score=179.40 Aligned_cols=277 Identities=19% Similarity=0.213 Sum_probs=159.4
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc----cCCccccCCCCCcEEEcccCcCCC------cCCccccCCC
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG----QIPVEIGNLTELINLELSDNNISG------EIPSEIGNLV 235 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~------~~p~~~~~l~ 235 (471)
.|+|..+.+........+..+.+|++++++++.++. .++..+...++++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 356666666545555555666667777777777642 234445556667777776665542 1122333344
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc----ccchhccCC-CCCCE
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG----EVPAELGKF-KKLVN 310 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~~-~~L~~ 310 (471)
+|++|++++|.+.+..+..+..+.. . ++|++|++++|.+++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 4444444444443322222222211 1 336666666665552 122334444 56666
Q ss_pred EEcccCcCccc----CchhhcCCCCCCEEeccCCcccc----cCchhhcCCCCCceeeccCCccccc----cchhhhcCC
Q 012103 311 LSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTG----PIPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCL 378 (471)
Q Consensus 311 L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~ 378 (471)
|++++|.+++. ++..+..+..|++|++++|.+++ .++..+...++|+.|++++|.+.+. +...+..++
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 77766666532 23334455667777777776653 2233344456777777777766532 334455677
Q ss_pred CCcEEEccCCcCccccccccc-----CCCCCCEeecccCcccc----ccchhhhccCCCCeeeCCCCcCccc----chhh
Q 012103 379 TLQRFRVSNNSLKGTVPAGIW-----GLPEVNIIDIALNQIEG----PITKDIENAKALNLLFAEYNRLSGE----LPEE 445 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~-----~~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~ 445 (471)
+|++|++++|.+++.....+. ..+.|+.|++++|.+++ .+...+..+++|+.+++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 788888888877753222211 24678888888888863 2344556667888888888888754 4444
Q ss_pred hhcC-CCCCEEeccCCcC
Q 012103 446 ISKA-TSLVVIKLNNNQL 462 (471)
Q Consensus 446 l~~l-~~L~~L~l~~n~~ 462 (471)
+... +.|+.+++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 6788888888875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=1.5e-20 Score=179.11 Aligned_cols=279 Identities=20% Similarity=0.232 Sum_probs=166.2
Q ss_pred EEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCC---CCCccccCCCCCCEEEcccccCcc------cCCccccCCC
Q 012103 141 HLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPT---PFPDQVVKLNKLNWLYLTNCSIDG------QIPVEIGNLT 211 (471)
Q Consensus 141 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~------~~~~~l~~l~ 211 (471)
.|+|..+.+++..-...+..+++|+.++++++.++.. .++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4677777777432225567778899999999988432 245566778889999999988762 2345677788
Q ss_pred CCcEEEcccCcCCCcCCccccCCCC---CCeEeecccccccc----CCccccCC-CCCCEEeCCCCcCccccccCCCCCC
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVK---LWRLELYNNQLSGK----LPVGLRNL-TNLANFDASTNFLEGDLSEVRFLTN 283 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~ 283 (471)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+.+. +...+..+ ++|+++++++|.+++...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------- 154 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------- 154 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH-------
Confidence 9999999999998666666655555 88888888877631 22233444 556666666665552111
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEeccCCccccc----CchhhcCCCC
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTGP----IPPDMCKRGT 355 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~ 355 (471)
..++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++. ++..+..+++
T Consensus 155 ------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 155 ------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred ------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 01122233334445555555444421 122233334555555555554321 2223344556
Q ss_pred CceeeccCCccccccchhhh-----cCCCCcEEEccCCcCcc----cccccccCCCCCCEeecccCccccc----cchhh
Q 012103 356 MRDLLMLQNKFTGEIPATYA-----NCLTLQRFRVSNNSLKG----TVPAGIWGLPEVNIIDIALNQIEGP----ITKDI 422 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~ls~n~~~~~----~~~~~ 422 (471)
|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+... ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 66666666665542222221 13577777777777752 2334455567788888888877754 33444
Q ss_pred hcc-CCCCeeeCCCCcC
Q 012103 423 ENA-KALNLLFAEYNRL 438 (471)
Q Consensus 423 ~~l-~~L~~L~l~~n~l 438 (471)
... +.++++++.+|.+
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 444 6777777777653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=2.3e-20 Score=149.99 Aligned_cols=165 Identities=23% Similarity=0.402 Sum_probs=103.7
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
-.+.+++.|.+++|.++ .+|..++.+.+|+.|++.+|++. .+|.++..++.|+.|+++-|++. ..|..++.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34455666666666666 45555666666666666666666 55666666666666666666665 56666666666666
Q ss_pred eeccCCcccc-ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 359 LLMLQNKFTG-EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 359 L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
|++..|++.. .+|..|..+..|..|++.+|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 6666665543 35555666666666666666666 56666666666666666666655 456666666666666666666
Q ss_pred CcccchhhhhcC
Q 012103 438 LSGELPEEISKA 449 (471)
Q Consensus 438 l~~~~p~~l~~l 449 (471)
++ .+|.+++++
T Consensus 185 l~-vlppel~~l 195 (264)
T KOG0617|consen 185 LT-VLPPELANL 195 (264)
T ss_pred ee-ecChhhhhh
Confidence 66 555555554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=1.7e-19 Score=145.09 Aligned_cols=154 Identities=27% Similarity=0.415 Sum_probs=76.6
Q ss_pred CCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEec
Q 012103 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337 (471)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (471)
+.+++.|.+++|+++..+|.+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..++.++.|+.||+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 34444445555555544444445555555555555554 44445555555555555555544 44445555555555555
Q ss_pred cCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 338 SENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 338 ~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.+|++. ..+|..+..+..|+.|.+++|.+. .+|...+++++|+.|.+.+|.+- .+|..++.+++|+.|.+++|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 555443 234444444445555555555544 44444455555555555555544 44555555555555555555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=148.45 Aligned_cols=149 Identities=34% Similarity=0.515 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----eeeceEeCCCC----CCEEEEEcCCCCCccccCcccccCC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFC-----NFTGITCNSDS----SFVQEIELSNRNLKGTLPFDSICQL 89 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~gv~c~~~~----~~v~~L~L~~~~l~g~l~~~~~~~l 89 (471)
...++|+.||+++|+++..+. ..+|.. ++| .|.||.|.... ..|+.|+|+++.+.|.+|.. +..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~---~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~-i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPL---RFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND-ISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcCCcc---cCCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-HhCC
Confidence 446789999999999987653 247964 344 79999996321 25899999999999999876 9999
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCC-CCCcEE
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNM-TNLVSL 167 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L 167 (471)
++|+.|++++|.+.|.+|..+..+++|+.|+|++|.++|.+| .+.++++|++|++++|.+++..| ..+... .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceE
Confidence 999999999999999999999999999999999999999888 78899999999999999998888 555543 456667
Q ss_pred EccCCCC
Q 012103 168 SVGDNPF 174 (471)
Q Consensus 168 ~l~~n~~ 174 (471)
++.+|..
T Consensus 521 ~~~~N~~ 527 (623)
T PLN03150 521 NFTDNAG 527 (623)
T ss_pred EecCCcc
Confidence 7766653
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.37 E-value=1.1e-12 Score=128.70 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=102.3
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCC-CCCEEEccCCcCccccchhccCCCCCCEEEcccCc
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLT-NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK 317 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~ 317 (471)
.+....+.+.... ..+...+.++.+++.+|.++...+...... +|+.|++++|.+. .+|..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 4555555543222 223344556666666666654444444442 5666666666665 344445556666666666666
Q ss_pred CcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccccc
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAG 397 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 397 (471)
+. .+|......+.|+.|++++|++. .+|........|+.+.+++|++. ..+..+..+..+..+.+.+|++. .++..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 65 34433334555666666666665 55544434444566666655433 23344455555555555555555 22444
Q ss_pred ccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 398 IWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 398 ~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
+..++.+++|++++|+++...+ +..+..++.|++++|.+....|
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 4455555555555555553322 4555555555555555554333
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.32 E-value=5.5e-14 Score=133.56 Aligned_cols=177 Identities=25% Similarity=0.361 Sum_probs=94.9
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCc
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 341 (471)
...|++.|++...+..+..+-.|+.+.++.|.+. .+|..+.++..|.+++++.|++. ..|..+..++ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3455555555533334444445555555555555 45555555555555555555555 4444444443 5555555555
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD 421 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 421 (471)
++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|.+. .+|..+..+ .|..||++.|++. .+|-+
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 54 55555555555555555555555 44555555555555555555555 444444432 3555555555555 35555
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhh
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEIS 447 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~ 447 (471)
|.+++.|++|.|.+|.+. .-|..++
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHH
Confidence 555555555555555555 4444443
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=6.8e-12 Score=123.04 Aligned_cols=193 Identities=32% Similarity=0.485 Sum_probs=87.6
Q ss_pred EEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCC-CCcEEEccCCCCCCCCCCccccCCCCCCEEEccc
Q 012103 118 YLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMT-NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196 (471)
Q Consensus 118 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 196 (471)
.+++..+.+...+..+..++.++.|++.+|.++...+ ...... +|+.|++++|.+ ..+|..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i--~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKI--ESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCcc--ccccchhhcccccccccch--hhhhhhhhccccccccccCC
Confidence 4566666554444444444556666666655554433 223332 555555555554 22233444555555555555
Q ss_pred ccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc
Q 012103 197 CSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276 (471)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (471)
|++. .+|...+..++|+.|++++|.+. .+|........|+++.+++| .....+.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N------------------------~~~~~~~ 226 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNN------------------------SIIELLS 226 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCC------------------------cceecch
Confidence 5554 23333334444555555555544 34433333333444444444 3222222
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
.+..+.++..+.+.+|++. .++..++.++.+++|++++|.+. .++. ++...+++.|++++|.+.
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccc
Confidence 3333344444444444443 22334444444555555555444 2222 444444555555555444
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.3e-13 Score=122.68 Aligned_cols=207 Identities=20% Similarity=0.210 Sum_probs=100.7
Q ss_pred CCCCCCEEeCCCCcCCccCC--CCCCCCCCCEEEccCCCCcccCCc-ccccCCCCCcEEEccCCCCCCCCCCccccCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP--EISSLNELQHLYLNLSGFSGVFPW-MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNK 188 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 188 (471)
++.+|+.+.|.++.+..... ....+++++.|++++|-+..-.+. .....+++|+.|+++.|++....-...-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34455555555554432221 333455555555555544432221 123445555666665555421111111123455
Q ss_pred CCEEEcccccCccc-CCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCC--ccccCCCCCCEEe
Q 012103 189 LNWLYLTNCSIDGQ-IPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP--VGLRNLTNLANFD 265 (471)
Q Consensus 189 L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~ 265 (471)
|+.|.++.|+++.. +-..+..+|+|+.|++..|............++.|++|+|++|.+. ..+ ...+.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 66666666666532 1222345566666666666422222233344556666666666554 222 3345566666666
Q ss_pred CCCCcCccccc-c------CCCCCCCCEEEccCCcCcc-ccchhccCCCCCCEEEcccCcCc
Q 012103 266 ASTNFLEGDLS-E------VRFLTNLVTLQLFKNQFSG-EVPAELGKFKKLVNLSLYTNKLT 319 (471)
Q Consensus 266 l~~n~~~~~~~-~------~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~L~~n~l~ 319 (471)
++.+.++..-. + ...+++|++|++..|++.. .....+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666553211 2 2445667777777776631 11123344556666666566554
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2.3e-11 Score=124.96 Aligned_cols=112 Identities=22% Similarity=0.408 Sum_probs=94.5
Q ss_pred CceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
++.|++++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|++.+.+|+.+.++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888888889888888888888888888888999999988888888888888899999998
Q ss_pred CcCcccchhhhhcC-CCCCEEeccCCcCcccCC
Q 012103 436 NRLSGELPEEISKA-TSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 436 n~l~~~~p~~l~~l-~~L~~L~l~~n~~sg~ip 467 (471)
|+++|.+|..+... .++..+++.+|+..+.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888888764 466788888887665454
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=5.7e-13 Score=126.76 Aligned_cols=168 Identities=29% Similarity=0.455 Sum_probs=79.3
Q ss_pred EEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCc
Q 012103 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 216 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~ 295 (471)
.+++.|.+. ++|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|++...+..+..++ |+.|.+++|+++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence 344444443 44444444444444444444444 344444444444444444444443332222222 455555555554
Q ss_pred cccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhh
Q 012103 296 GEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYA 375 (471)
Q Consensus 296 ~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 375 (471)
.+|..++..+.|..||.+.|.+. .+|..++++..|+.|++..|.+. .+|+.++.+ .|..||++.|+++ .+|..|.
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr 231 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFR 231 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhh
Confidence 44444444445555555555554 34444455555555555555554 444444422 3455555555555 4455555
Q ss_pred cCCCCcEEEccCCcCc
Q 012103 376 NCLTLQRFRVSNNSLK 391 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~ 391 (471)
+|..|++|-|.+|.+.
T Consensus 232 ~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhheeeeeccCCCC
Confidence 5555555555555554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-12 Score=118.93 Aligned_cols=160 Identities=18% Similarity=0.144 Sum_probs=74.0
Q ss_pred cCCCCCCeEeeccccccccCC-ccccCCCCCCEEeCCCCcCccccc---cCCCCCCCCEEEccCCcCccccch-hccCCC
Q 012103 232 GNLVKLWRLELYNNQLSGKLP-VGLRNLTNLANFDASTNFLEGDLS---EVRFLTNLVTLQLFKNQFSGEVPA-ELGKFK 306 (471)
Q Consensus 232 ~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~-~l~~~~ 306 (471)
.++.+|+.+.+.++.+..... .....+++++.||++.|-+..-.+ ....+++|+.|+++.|.+..-... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456777777777776652211 244566667777777666554322 334456666666666655421110 011234
Q ss_pred CCCEEEcccCcCcc-cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc-cchhhhcCCCCcEEE
Q 012103 307 KLVNLSLYTNKLTG-ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE-IPATYANCLTLQRFR 384 (471)
Q Consensus 307 ~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 384 (471)
+|+.|.++.|.++- .+...+..+|+|+.|++..|.....-......+..|+.|+|++|++-.. .....+.++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 55555555555541 1222234445555555555531111111112233445555555444311 112233444444444
Q ss_pred ccCCcCc
Q 012103 385 VSNNSLK 391 (471)
Q Consensus 385 L~~n~~~ 391 (471)
++.+.+.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 4444444
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=5.3e-12 Score=111.18 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEc
Q 012103 306 KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRV 385 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 385 (471)
..|+++|+++|.++ .+.++..-.|.++.|+++.|.+. .+. .+..+++|+.|++++|.++ .+..+-..+.++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 44455555555544 33334444444555555555443 221 2344444555555555444 23333334444444555
Q ss_pred cCCcCcccccccccCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCc
Q 012103 386 SNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 386 ~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++|.+. .+ .++..+-+|..||+++|+|... .-..++++|.|+.+.+.+|.+.
T Consensus 360 a~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 544443 11 1233444444444444444321 1123344444444444444444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=8.1e-12 Score=112.36 Aligned_cols=245 Identities=19% Similarity=0.266 Sum_probs=138.8
Q ss_pred ccCCCCCcEEEcccCcCCCc----CCccccCCCCCCeEeeccc---cccccCCc-------cccCCCCCCEEeCCCCcCc
Q 012103 207 IGNLTELINLELSDNNISGE----IPSEIGNLVKLWRLELYNN---QLSGKLPV-------GLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n---~l~~~~~~-------~l~~l~~L~~L~l~~n~~~ 272 (471)
+..+..++.+++++|.+... +...+...++|+..+++.- +....+|+ .+..+++|+++++|+|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 44566777788887776532 2333445566666666531 11112222 2334456666666666554
Q ss_pred cccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc---
Q 012103 273 GDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--- 344 (471)
Q Consensus 273 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--- 344 (471)
.... .++.+.+|++|.+.+|.+...--..++. .|..+. ...-.+.-+.|+.+....|++..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 3221 2344555555555555554211111110 011111 01112334567777777777642
Q ss_pred -cCchhhcCCCCCceeeccCCcccc----ccchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccc
Q 012103 345 -PIPPDMCKRGTMRDLLMLQNKFTG----EIPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 345 -~~p~~~~~~~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
.+...+...+.|+.+.+..|.|.. .+...+..|++|+.|||.+|-++.. +...+..++.|+.+++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 222345566777888887776653 2334577788888888888887732 3445666778888888888777
Q ss_pred cccchhhh-----ccCCCCeeeCCCCcCcc----cchhhhhcCCCCCEEeccCCcC
Q 012103 416 GPITKDIE-----NAKALNLLFAEYNRLSG----ELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 416 ~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
......+. ..++|+.+.+.+|.|+. .+..++...+.|..|+|++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 65443332 35788888888888763 3334455567888888888887
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=7e-12 Score=112.78 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=74.7
Q ss_pred cCCCCCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccc----cchhccCCCCCCEEEcccCcCccc----C
Q 012103 256 RNLTNLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGA----L 322 (471)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~----~ 322 (471)
..-+.|+.+...+|++..... .+...+.|+.+.++.|.+... +...+..+++|+.|||.+|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 345567777777776654322 445556777777777766532 223456677777777777776532 2
Q ss_pred chhhcCCCCCCEEeccCCcccccCchhh-----cCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcC
Q 012103 323 PQELGSWAEFDFIDVSENLLTGPIPPDM-----CKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSL 390 (471)
Q Consensus 323 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~-----~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~ 390 (471)
...+..+++|+.|++++|.+...-...+ ...+.|+.+.+.+|.++.. +..+....+.|..|+|++|++
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2344556667777777776653322221 2245566666666655532 222333445555555555555
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.4e-11 Score=108.50 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=99.7
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
..+..|+++++++|.++ .+.++..-.|.++.|++++|.+.. +. .+..+++|..||+++|.++ .+..+-..+.+++.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34566788888888887 667777777888888888888872 22 3677788888888888886 55556666778888
Q ss_pred eeccCCccccccchhhhcCCCCcEEEccCCcCccc-ccccccCCCCCCEeecccCccccc
Q 012103 359 LLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT-VPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 359 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
|.+++|.+.. ...+..+.+|..||+++|+|... --..++++|.|+.+.+.+|++.+.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 8888887762 24567778888889999888732 124578888899999999988764
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.3e-10 Score=98.05 Aligned_cols=105 Identities=26% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCcEEeCCCCCCCcccccccc-CCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLN-NCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
.++.|+|++|.|+.. +.++ .+.+|+.|++++|.++.. ..+..+++|+.|++++|.++...+ .....+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEEC
Confidence 445555555555421 1232 344555555555555432 234444444444554444443211 11123444555555
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccC
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSI 199 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 199 (471)
++|++.....-..+..+++|++|++.+|.+
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 544443322223333444444444444433
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.03 E-value=1.3e-10 Score=122.17 Aligned_cols=86 Identities=26% Similarity=0.307 Sum_probs=43.1
Q ss_pred ccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCc
Q 012103 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (471)
|..++.|++||+++|.--+.+|..++.+-+||+|+++++.+...|..+.+++.|.+|++..+.....++ .....+++|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-chhhhccccc
Confidence 444555555555554444455555555555555555555555444455555555555555544333333 3333455555
Q ss_pred EEEccCC
Q 012103 166 SLSVGDN 172 (471)
Q Consensus 166 ~L~l~~n 172 (471)
+|.+...
T Consensus 646 ~L~l~~s 652 (889)
T KOG4658|consen 646 VLRLPRS 652 (889)
T ss_pred EEEeecc
Confidence 5555433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=4.5e-10 Score=94.80 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=47.8
Q ss_pred cCCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc-cCCCCC
Q 012103 327 GSWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI-WGLPEV 404 (471)
Q Consensus 327 ~~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~-~~~~~L 404 (471)
.+...+++|+|.+|.++ .+. .+. .+.+|+.|++++|.+.. + +.+..++.|++|++++|+++ .++..+ ..+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 34456788888888886 343 444 46788888888888884 3 34667888888888888888 454444 357888
Q ss_pred CEeecccCccccc-cchhhhccCCCCeeeCCCCcCcccch----hhhhcCCCCCEEecc
Q 012103 405 NIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP----EEISKATSLVVIKLN 458 (471)
Q Consensus 405 ~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~l~ 458 (471)
+.|++++|+|... .-..+..+++|+.|++.+|.+... + ..+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 8888888888753 224566788888888888888732 2 235667888887743
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=5.8e-11 Score=116.68 Aligned_cols=223 Identities=25% Similarity=0.272 Sum_probs=104.8
Q ss_pred CCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEE
Q 012103 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312 (471)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 312 (471)
.+.+|+.+++.+|.+.+. ...+..+++|++|++++|.++. +..+..++.|+.|++++|.++.. ..+..++.|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchhhc-ccchhhhhcchheecccccccc-ccchhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 334444444444444321 1113344455555555554442 22233334455555555555421 1222345555555
Q ss_pred cccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCC--CCcEEEccCCc
Q 012103 313 LYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCL--TLQRFRVSNNS 389 (471)
Q Consensus 313 L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~n~ 389 (471)
+++|.+...-+ . ...+..++.+.+++|.+. ....+.....+..+++..|.++..-+ +..++ .|+.+++.+|+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 55555553222 1 344555666666666554 11223333344444555555542211 11122 25666666666
Q ss_pred CcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc---cchhh-hhcCCCCCEEeccCCcCccc
Q 012103 390 LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG---ELPEE-ISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 390 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~---~~p~~-l~~l~~L~~L~l~~n~~sg~ 465 (471)
+. .++..+..+..+..+++.+|++... ..+...+.+..+....|.+.. ..... ....+.++.+.+.+|++...
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 66 3334555566666666666666533 223444555556666665541 11111 34456666666666666544
Q ss_pred CC
Q 012103 466 IP 467 (471)
Q Consensus 466 ip 467 (471)
.+
T Consensus 321 ~~ 322 (414)
T KOG0531|consen 321 SS 322 (414)
T ss_pred cc
Confidence 43
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.96 E-value=6e-10 Score=117.12 Aligned_cols=249 Identities=20% Similarity=0.258 Sum_probs=110.5
Q ss_pred cccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCC
Q 012103 157 SLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK 236 (471)
Q Consensus 157 ~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 236 (471)
.|..++.|++||+++|.- ...+|..++.+-+||+|+++++.+. .+|..+.++..|.+|++..+.....+|.....+.+
T Consensus 566 ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 355555555555555432 3445555666666666666665555 55556666666666666555443334444444566
Q ss_pred CCeEeecccccc--ccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCC----EEEccCCcCccccchhccCCCCCCE
Q 012103 237 LWRLELYNNQLS--GKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLV----TLQLFKNQFSGEVPAELGKFKKLVN 310 (471)
Q Consensus 237 L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~ 310 (471)
|++|.+...... ...-..+.++.+|+.+....... .....+..++.|. .+.+.++... ..+..+..+.+|+.
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEE 721 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcce
Confidence 666655544321 11112223334444433322221 0001111112121 2222222222 33344555666666
Q ss_pred EEcccCcCcccCchhhcC------CCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 311 LSLYTNKLTGALPQELGS------WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 311 L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
|.+.++.+.......... ++++..+.+.++..- ..+.+....++|+.|.+..+.....+......+..++.+.
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i 800 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELI 800 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEE
Confidence 666666654221111000 122222222232221 2233333456677777766655555555555555555554
Q ss_pred ccCCcCccc-ccccccCCCCCCEeecc
Q 012103 385 VSNNSLKGT-VPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 385 L~~n~~~~~-~~~~~~~~~~L~~L~ls 410 (471)
+..+.+.+. .-...+.++++..+.+.
T Consensus 801 ~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 801 LPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred ecccccccceeeecCCCCceeEecccC
Confidence 555554433 22333344444443333
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.3e-09 Score=75.52 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred CCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|+|++|++++|++....+..|.++++|+.|++++|+++...|+.|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3456666666666655555666666666666666666655556666666666666666654
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.8e-09 Score=73.20 Aligned_cols=60 Identities=25% Similarity=0.358 Sum_probs=32.8
Q ss_pred CCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcC
Q 012103 379 TLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRL 438 (471)
Q Consensus 379 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l 438 (471)
+|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555533334555555555555555555555555555555555555555543
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.78 E-value=8.9e-09 Score=65.27 Aligned_cols=40 Identities=35% Similarity=0.772 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCceeeceEeC
Q 012103 22 SDELQILLNLKTSLKDSKSSIFSSWVSN--NHFCNFTGITCN 61 (471)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~gv~c~ 61 (471)
++|++||++||.++..++...+.+|..+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986445889999977 799999999995
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=8.4e-10 Score=108.50 Aligned_cols=196 Identities=27% Similarity=0.269 Sum_probs=97.1
Q ss_pred CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.+..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhh
Confidence 34556666666666622 22345666777777777777763 3222556667777777777766332 2344555666
Q ss_pred EeeccccccccCCccccCCCCCCEEeCCCCcCcccccc-CCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSE-VRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
|++.+|.+... ..+..++.|+.+++++|.+...-.. ...+.+++.+++.+|.+... ..+.....+..+++..|.+
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 66666666521 2234455666666666655432221 24455555555555555421 1122222333334444444
Q ss_pred cccCchhhcCCC--CCCEEeccCCcccccCchhhcCCCCCceeeccCCccc
Q 012103 319 TGALPQELGSWA--EFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 319 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
+..-+ +.... .|+.+++++|.+. .++..+..+..+..+++.+|++.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 42111 11111 1455555555554 22233344444555555555444
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.7e-08 Score=89.33 Aligned_cols=209 Identities=18% Similarity=0.142 Sum_probs=116.3
Q ss_pred ccCCCCCcEEeCCCCCCCc--cccccccCCCCCCEEeCCCCcCCccCC---CCCCCCCCCEEEccCCCCcccCCcccc-c
Q 012103 86 ICQLQALHKLSLGFNSLYG--EISKDLNNCVKLQYLDLGNNVFSGSFP---EISSLNELQHLYLNLSGFSGVFPWMSL-G 159 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~-~ 159 (471)
++..+.++.+.+.++.+.. .....-..++.++.+||.+|.++.-.. -+.++|.|++|+++.|++...+. .+ .
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~ 118 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPL 118 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcc
Confidence 4444555566666665532 222222355778888888888764322 45678888888888888876543 22 4
Q ss_pred CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCccc--CCccccCC-CCCcEEEcccCcCCC--cCCccccCC
Q 012103 160 NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQ--IPVEIGNL-TELINLELSDNNISG--EIPSEIGNL 234 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~p~~~~~l 234 (471)
...+|++|.|.+..+.-......+..+|.++.|.++.|.+... -....... +.++++....|.... .+...-.-+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 5668888888887774333445566777888887777743210 00111111 234444443332210 000111224
Q ss_pred CCCCeEeecccccccc-CCccccCCCCCCEEeCCCCcCccc--cccCCCCCCCCEEEccCCcCcc
Q 012103 235 VKLWRLELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEGD--LSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 235 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
+++..+.+..|.+... .......++.+..|+++.+++..- +..+..+++|+.|.++++.+..
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 5566666666655422 223344455666777777776542 2266677777777777777663
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.1e-09 Score=96.75 Aligned_cols=205 Identities=18% Similarity=0.165 Sum_probs=126.5
Q ss_pred CCEEEEEcCCCCCccccCcccccCC-CCCcEEeCCCCCCCcc-ccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQL-QALHKLSLGFNSLYGE-ISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQH 141 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l-~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~ 141 (471)
..|..+.+....+...--++.+.-+ ..|++||+++..++.. +-.-++.|.+|+.|++.++++...+. .+.+-.+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 3466666654333321011112222 2488888888777642 23345678888888888888887666 7788888888
Q ss_pred EEccCCC-CcccCCcccccCCCCCcEEEccCCCCCCCCCCccccC-CCCCCEEEcccccCc---ccCCccccCCCCCcEE
Q 012103 142 LYLNLSG-FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVK-LNKLNWLYLTNCSID---GQIPVEIGNLTELINL 216 (471)
Q Consensus 142 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L 216 (471)
|+++.+. ++...-...+.+++.|..|+++.|......+...+.. -++|..|+++++.-. ..+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 8888764 3322111345778888888888887643322222222 256788888876422 1222334678888889
Q ss_pred EcccCcC-CCcCCccccCCCCCCeEeeccccccccCCcc---ccCCCCCCEEeCCCCcC
Q 012103 217 ELSDNNI-SGEIPSEIGNLVKLWRLELYNNQLSGKLPVG---LRNLTNLANFDASTNFL 271 (471)
Q Consensus 217 ~L~~n~l-~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~ 271 (471)
||++|.. +......+.+++.|++|.++.|.. ..|.. +...+.|.+|++-++--
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccC
Confidence 8888653 323334566788888888887754 34443 46678888888876543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.2e-08 Score=86.89 Aligned_cols=222 Identities=18% Similarity=0.124 Sum_probs=124.3
Q ss_pred CCcEEEccCCCCCCCCCCcccc-CCCCCCEEEcccccCcc--cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDG--QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.++.+.+.++.+........++ .+..++.+++..|.++. .+...+.++|+|+.|+++.|.+...+-..-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444445555553333233332 34567777777777662 34444567778888888877776433221134567788
Q ss_pred Eeecccccccc-CCccccCCCCCCEEeCCCCcCcc---ccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEE
Q 012103 240 LELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEG---DLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLS 312 (471)
Q Consensus 240 L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~---~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~ 312 (471)
|.+.+..+... ....+..+|.+++++++.|.+.- +-. .-...+.++++++..|...- .....-..+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 88877766532 23345677777888888774321 111 11122455566655554321 1111122356777778
Q ss_pred cccCcCcccC-chhhcCCCCCCEEeccCCcccccC-chhhcCCCCCceeeccCCccccccch------hhhcCCCCcEEE
Q 012103 313 LYTNKLTGAL-PQELGSWAEFDFIDVSENLLTGPI-PPDMCKRGTMRDLLMLQNKFTGEIPA------TYANCLTLQRFR 384 (471)
Q Consensus 313 L~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~~~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~ 384 (471)
+..|.+...- ......++.+..|+|+.+++..-. -..+.+++.|..|.++++.+...+.. .++.+++++.|+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 8888775422 223455666778888888775211 12456677888888888877643322 235566666664
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.9e-09 Score=93.31 Aligned_cols=84 Identities=19% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCcEEEcccCcCCCc-CCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc---cCCCCCCCCEE
Q 012103 212 ELINLELSDNNISGE-IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS---EVRFLTNLVTL 287 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L 287 (471)
.|+.+||++..++.. +-..+..|.+|+.|.+.++++...+...+....+|+.++++.+.--.... .+++++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777777666531 22234567777777777777776666666777777777776653211111 34455555555
Q ss_pred EccCCcCc
Q 012103 288 QLFKNQFS 295 (471)
Q Consensus 288 ~l~~n~l~ 295 (471)
+++.|.++
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 55555544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=3.7e-08 Score=86.12 Aligned_cols=160 Identities=23% Similarity=0.170 Sum_probs=85.5
Q ss_pred cCCCCCcEEEcccCcCCCcCCcc----ccCCCCCCeEeecccccccc----CC---------ccccCCCCCCEEeCCCCc
Q 012103 208 GNLTELINLELSDNNISGEIPSE----IGNLVKLWRLELYNNQLSGK----LP---------VGLRNLTNLANFDASTNF 270 (471)
Q Consensus 208 ~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l~~~----~~---------~~l~~l~~L~~L~l~~n~ 270 (471)
-.|++|+..+|+.|.+....|.. ++.-..|++|.+++|.+... +. ....+-|.|+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555555555555554433332 22334555555555544211 11 112345677777777777
Q ss_pred Cccccc-----cCCCCCCCCEEEccCCcCccccc-----hhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEe
Q 012103 271 LEGDLS-----EVRFLTNLVTLQLFKNQFSGEVP-----AELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFID 336 (471)
Q Consensus 271 ~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~-----~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ 336 (471)
+..... .+.....|+.+.+..|.|..... ..+..+.+|+.||+++|.++-. +...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 653222 23334577888888887763321 1234567788888888877632 223445666777777
Q ss_pred ccCCcccccCchhh------cCCCCCceeeccCCccc
Q 012103 337 VSENLLTGPIPPDM------CKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 337 L~~n~l~~~~p~~~------~~~~~L~~L~l~~n~~~ 367 (471)
+.+|-++..-..++ ...++|..|....|...
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 77776653322221 12345566666555443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=1.7e-08 Score=99.43 Aligned_cols=176 Identities=25% Similarity=0.308 Sum_probs=118.8
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCC-CCCCEEEcccCcCc----------ccCchhhcCCCCCCEEeccCCccccc
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKF-KKLVNLSLYTNKLT----------GALPQELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~L~~n~l~----------~~~~~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
.+..+.+|+.|.+.++.+... ..+..+ ..|++|-. .|.++ |.+..+ ..+..|...+.+.|.++ .
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns-~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS-PVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc-hhhhhHhhhhcchhhHH-h
Confidence 556678899999999988731 111111 13333322 12221 111111 12346778888888887 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccc-cccCCCCCCEeecccCccccccchhhhc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPA-GIWGLPEVNIIDIALNQIEGPITKDIEN 424 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~~~~~~~L~~L~ls~n~~~~~~~~~~~~ 424 (471)
...++.-++.++.|+|++|+++... .+..|+.|+.|||+.|.+. .+|. ....+. |+.|.+++|.++.. ..+.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 6667777888899999999888443 6778889999999999988 5554 233444 88999999988743 46788
Q ss_pred cCCCCeeeCCCCcCccc-chhhhhcCCCCCEEeccCCcCc
Q 012103 425 AKALNLLFAEYNRLSGE-LPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 425 l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+.+|+-||+++|-|.+- --+.++.+..|++|.|.||++.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88999999999977641 1233566677888999999876
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=8.5e-09 Score=101.50 Aligned_cols=178 Identities=25% Similarity=0.295 Sum_probs=101.6
Q ss_pred CccccCCCCCCeEeeccccccccCCccccCC-CCCCEEeCCCCcCc----------cccccCCCCCCCCEEEccCCcCcc
Q 012103 228 PSEIGNLVKLWRLELYNNQLSGKLPVGLRNL-TNLANFDASTNFLE----------GDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 228 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~----------~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
|-.+..+.+|++|.+.++.+.. ...+..+ ..|++|-. .|.+. |++..--....|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 6677888999999999988863 1111111 12233222 22111 11111111245667777777776
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhhh
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATYA 375 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~~ 375 (471)
....++.-++.++.|+|+.|+++.. ..+..++.|++|||++|.++ .+|.. ...+ .|+.|.+++|.++.. ..+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 5556666677777777777777632 25666777777777777776 55532 2223 377777777766521 2345
Q ss_pred cCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccc
Q 012103 376 NCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~ 415 (471)
++.+|+.||+++|-+.+.-. ..++.+..|+.|+|.+|++-
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66667777777766653211 12344556666666666654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=1.2e-07 Score=82.99 Aligned_cols=245 Identities=19% Similarity=0.221 Sum_probs=120.9
Q ss_pred ccCCCCCcEEEcccCcCCCcCCcc----ccCCCCCCeEeeccccc---cccCC-------ccccCCCCCCEEeCCCCcCc
Q 012103 207 IGNLTELINLELSDNNISGEIPSE----IGNLVKLWRLELYNNQL---SGKLP-------VGLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~n~~~ 272 (471)
+.-+..+..++|++|.+...-..+ +++-.+|+...++.--. ...++ ..+..+++|+.++++.|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344667888888888776543333 33445666666554211 11111 23455667777777776665
Q ss_pred cccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc
Q 012103 273 GDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347 (471)
Q Consensus 273 ~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 347 (471)
...+ .++..+.|++|.+++|.+...--..++. .|.+ +.+| .-...-|.|+.+.+..|++. ..|
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~--la~n-------KKaa~kp~Le~vicgrNRle-ngs 173 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFH--LAYN-------KKAADKPKLEVVICGRNRLE-NGS 173 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHH--HHHH-------hhhccCCCceEEEeccchhc-cCc
Confidence 4333 3455566666666666554211111110 0000 0000 01122345556666665553 111
Q ss_pred h-----hhcCCCCCceeeccCCccccc-----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCc
Q 012103 348 P-----DMCKRGTMRDLLMLQNKFTGE-----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQ 413 (471)
Q Consensus 348 ~-----~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~ 413 (471)
. .+..-.+|+.+.+..|.|... +...+..+.+|+.||+.+|.++-. +...+...+.|+.|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1 122234566666666655432 122344566777777777766521 22233444556777777776
Q ss_pred cccccchhh----h--ccCCCCeeeCCCCcCcccchhhh-------hcCCCCCEEeccCCcCc
Q 012103 414 IEGPITKDI----E--NAKALNLLFAEYNRLSGELPEEI-------SKATSLVVIKLNNNQLT 463 (471)
Q Consensus 414 ~~~~~~~~~----~--~l~~L~~L~l~~n~l~~~~p~~l-------~~l~~L~~L~l~~n~~s 463 (471)
++....+.+ . ..++|..|...+|.+.+.+...+ ..+|-|..+.+.||+|+
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 654433222 1 23666777777776654332221 22455666666666665
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.1e-07 Score=74.45 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=41.6
Q ss_pred CCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
..|..++|++|.+. .+|+.+. .++..+.+++++|.++ .+|..++.++.|+.++++.|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444555555554 3343332 2334555555555555 34444555555555555555555 4444444455555555
Q ss_pred cccCccc
Q 012103 409 IALNQIE 415 (471)
Q Consensus 409 ls~n~~~ 415 (471)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.18 E-value=1.3e-06 Score=55.38 Aligned_cols=36 Identities=31% Similarity=0.499 Sum_probs=16.8
Q ss_pred CCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 427 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 34444555555555555555554
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.6e-07 Score=72.46 Aligned_cols=132 Identities=15% Similarity=0.174 Sum_probs=82.8
Q ss_pred CCEEEccCCcCccccc---hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceee
Q 012103 284 LVTLQLFKNQFSGEVP---AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLL 360 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 360 (471)
+..++++.|++- .++ ..+.....|+.+++++|.+...-+.....++.++.+++++|.+. .+|+.+..++.|+.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 455667777654 222 23344456667778888777433333345567777888888776 7777777777888888
Q ss_pred ccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 361 MLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 361 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
++.|.+. ..|..+..+.++..|+..+|.+. .+|..+...+..-..++.++.+.+.-+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888777 55566666777777777777776 555444333334444555555555443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.6e-05 Score=50.35 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=13.5
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
|++|++++|+|+. +|..+.++++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 3444444444442 2323444444444444444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.79 E-value=8.4e-06 Score=84.12 Aligned_cols=135 Identities=23% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCCcEEEccCCCCCCCCCCcccc-CCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 162 TNLVSLSVGDNPFDPTPFPDQVV-KLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 162 ~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
.+|++|++++...-....|..++ .+|.|+.|.+.+-.+.. .+-.-..++++|..||+++++++. + ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 35555566555443344444443 35666666666554432 122233456666666666666652 2 45566666666
Q ss_pred Eeeccccccc-cCCccccCCCCCCEEeCCCCcCccccc-------cCCCCCCCCEEEccCCcCcccc
Q 012103 240 LELYNNQLSG-KLPVGLRNLTNLANFDASTNFLEGDLS-------EVRFLTNLVTLQLFKNQFSGEV 298 (471)
Q Consensus 240 L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~-------~~~~~~~L~~L~l~~n~l~~~~ 298 (471)
|.+.+=.+.. ..-..+.++++|+.||+|......... .-..+|+|+.||.+++.+...+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 6665544431 111234566677777776654433221 1223567777777766666543
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=9.7e-05 Score=70.52 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=77.8
Q ss_pred ccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc
Q 012103 302 LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 381 (471)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|+.|.+++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 455788999999999887 5562 23469999999854333667555 35899999998843324443 577
Q ss_pred EEEccCCcCc--ccccccccCCCCCCEeecccCcccc--ccchhhhcc-CCCCeeeCCCCcCcccchhhhhcCCCCCEEe
Q 012103 382 RFRVSNNSLK--GTVPAGIWGLPEVNIIDIALNQIEG--PITKDIENA-KALNLLFAEYNRLSGELPEEISKATSLVVIK 456 (471)
Q Consensus 382 ~L~L~~n~~~--~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 456 (471)
.|++.++... +.+|. +|+.|.+.+++... .+|. .+ ++|+.|++++|... ..|+.+. .+|+.|.
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 7777765543 13343 34455543322110 0110 11 45666666665544 2333332 3556666
Q ss_pred ccCC
Q 012103 457 LNNN 460 (471)
Q Consensus 457 l~~n 460 (471)
++.|
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 6554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.74 E-value=6.7e-05 Score=63.29 Aligned_cols=105 Identities=22% Similarity=0.203 Sum_probs=52.6
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCC-CCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEIS-SLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+...+|+++|.+.. ...|..++.|..|.+.+|+|+..-|.+. .+++|..|.+.+|.+........+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44555666665532 1235555666666666666665555333 34455566665555543322234455556666665
Q ss_pred cCCCCCCCCCC--ccccCCCCCCEEEcccc
Q 012103 170 GDNPFDPTPFP--DQVVKLNKLNWLYLTNC 197 (471)
Q Consensus 170 ~~n~~~~~~~~--~~l~~l~~L~~L~l~~n 197 (471)
-+|......-. ..+..+|+|+.||++.-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 55554221111 12344555555555543
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=9.3e-05 Score=62.46 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=54.8
Q ss_pred CCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE
Q 012103 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY 193 (471)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 193 (471)
.....+||++|.+. ..+.+.+++.|..|.+++|.++...| ..-.-+++|+.|.+.+|++.....-..+..+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 35667888888775 34456677777788888887777666 44445566777777777764433344455566666666
Q ss_pred cccccCc
Q 012103 194 LTNCSID 200 (471)
Q Consensus 194 l~~n~l~ 200 (471)
+-+|...
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 6555554
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.2e-05 Score=83.09 Aligned_cols=149 Identities=20% Similarity=0.228 Sum_probs=89.5
Q ss_pred CCCCEEeCCCCcCC-ccCC-CC-CCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 114 VKLQYLDLGNNVFS-GSFP-EI-SSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 114 ~~L~~L~l~~n~l~-~~~~-~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.+|++||+++.... ..++ .+ ..+|+|+.|.+.+-.+....-.....++++|..||++++.++.. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 57888888775432 2222 33 35788888888776654322114456778888888888877332 5677788888
Q ss_pred EEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCcC--C----ccccCCCCCCeEeeccccccccCCcc-ccCCCCCC
Q 012103 191 WLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGEI--P----SEIGNLVKLWRLELYNNQLSGKLPVG-LRNLTNLA 262 (471)
Q Consensus 191 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--p----~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~ 262 (471)
+|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..++.|+.||.+++.+.+..-+. +...++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88777766552 22235667888888888876543211 1 11123678888888887776543322 23344444
Q ss_pred EEe
Q 012103 263 NFD 265 (471)
Q Consensus 263 ~L~ 265 (471)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00016 Score=69.06 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=16.2
Q ss_pred CCCCCCeEeeccccccccCCccccCCCCCCEEeCCC
Q 012103 233 NLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268 (471)
Q Consensus 233 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (471)
.+.++++|++++|.++ .+|. -..+|++|.+++
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsn 81 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIEN 81 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccC
Confidence 3456666666666554 3331 122455555554
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.32 E-value=4.3e-06 Score=77.82 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=40.8
Q ss_pred CCcEEeCCCCCCCcc--ccccccCCCCCCEEeCCCCcCCccCC--CC-CCCCCCCEEEccCCC-CcccCCcccccCCCCC
Q 012103 91 ALHKLSLGFNSLYGE--ISKDLNNCVKLQYLDLGNNVFSGSFP--EI-SSLNELQHLYLNLSG-FSGVFPWMSLGNMTNL 164 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~--~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 164 (471)
.|+.|.++++.=.+. +-.....++++++|++.++....... .+ ..+++|+++++..|. ++...-......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566677766554332 22234566677776666664222111 12 345666666666532 2222110122345666
Q ss_pred cEEEccCCC
Q 012103 165 VSLSVGDNP 173 (471)
Q Consensus 165 ~~L~l~~n~ 173 (471)
++++++.+.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 666666654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.0012 Score=53.36 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=29.8
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++++.+.+..+ +...-...|.++++++.+.+.+ .+...-...|..+++|+.+++..+ +.......+.++ .++.
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~ 107 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKE 107 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--E
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceE
Confidence 33334444444432 3322233344444455555433 222122233444455555555433 332223334444 5555
Q ss_pred eeCCCCcCcccchhhhhcCCCC
Q 012103 431 LFAEYNRLSGELPEEISKATSL 452 (471)
Q Consensus 431 L~l~~n~l~~~~p~~l~~l~~L 452 (471)
+.+.. .+...-...|.++++|
T Consensus 108 i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 108 INIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EE-TT-B-SS----GGG-----
T ss_pred EEECC-CccEECCccccccccC
Confidence 55443 2222333344444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.0023 Score=51.61 Aligned_cols=13 Identities=8% Similarity=0.217 Sum_probs=4.4
Q ss_pred ccCCCCCCEEEcc
Q 012103 302 LGKFKKLVNLSLY 314 (471)
Q Consensus 302 l~~~~~L~~L~L~ 314 (471)
+..+++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3333344444443
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.09 E-value=1.3e-05 Score=74.69 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=41.6
Q ss_pred CCCCCEEEcccCcCc--ccCchhhcCCCCCCEEeccCCcccccC-----chhhcCCCCCceeeccCCccc-cccchhhhc
Q 012103 305 FKKLVNLSLYTNKLT--GALPQELGSWAEFDFIDVSENLLTGPI-----PPDMCKRGTMRDLLMLQNKFT-GEIPATYAN 376 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~~~~-----p~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~ 376 (471)
++.|+.+++..+... +.+.+.-.+++.|+.+.++.+...... ...-+....++.+.++++... ...-+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 455555555554432 122222344555666666655432111 122234455666666666433 233445556
Q ss_pred CCCCcEEEccCCc
Q 012103 377 CLTLQRFRVSNNS 389 (471)
Q Consensus 377 ~~~L~~L~L~~n~ 389 (471)
|++|+.+++-+++
T Consensus 425 c~~Leri~l~~~q 437 (483)
T KOG4341|consen 425 CRNLERIELIDCQ 437 (483)
T ss_pred Ccccceeeeechh
Confidence 6666666666544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00068 Score=59.77 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.0
Q ss_pred CCCCCEEeCCCC
Q 012103 113 CVKLQYLDLGNN 124 (471)
Q Consensus 113 l~~L~~L~l~~n 124 (471)
+++|++|+++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 334444444444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.00054 Score=60.43 Aligned_cols=38 Identities=37% Similarity=0.450 Sum_probs=15.6
Q ss_pred CCCCcEEEcccC--cCCCcCCccccCCCCCCeEeeccccc
Q 012103 210 LTELINLELSDN--NISGEIPSEIGNLVKLWRLELYNNQL 247 (471)
Q Consensus 210 l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l 247 (471)
+++|+.|.++.| .+.+.++.....+++|+++.+++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444 33333333233334444444444444
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.00028 Score=62.58 Aligned_cols=66 Identities=20% Similarity=0.201 Sum_probs=28.5
Q ss_pred cCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCcccch
Q 012103 376 NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 376 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
.|+.|++|.|+-|+|+ .+ ..+..|++|+.|+|..|.|.+. .-..+.++++|+.|+|..|...|.-+
T Consensus 39 kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 3444444444444444 11 1133444444444444444431 11233455555555555555544433
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.00033 Score=70.68 Aligned_cols=186 Identities=19% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCCCCEEeCCCCcCCc---cCCCCCCCCCCCEEEccCC-CCcccC---CcccccCCCCCcEEEccCCC-CCCCCCCcccc
Q 012103 113 CVKLQYLDLGNNVFSG---SFPEISSLNELQHLYLNLS-GFSGVF---PWMSLGNMTNLVSLSVGDNP-FDPTPFPDQVV 184 (471)
Q Consensus 113 l~~L~~L~l~~n~l~~---~~~~l~~l~~L~~L~l~~n-~l~~~~---~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~l~ 184 (471)
++.|+.|.+..+.-.. ..+....++.|+.|+++++ ...... .......+++|+.|+++.+. ++...+.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666653322 1234456666777776652 111111 11233445677777777776 43332222233
Q ss_pred CCCCCCEEEccccc-Cccc-CCccccCCCCCcEEEcccCcCCCc--CCccccCCCCCCeEeeccccccccCCccccCCCC
Q 012103 185 KLNKLNWLYLTNCS-IDGQ-IPVEIGNLTELINLELSDNNISGE--IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN 260 (471)
Q Consensus 185 ~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 260 (471)
.+++|++|.+.+|. ++.. +......+++|++|+++++..... +.....++++++.+.+....- ++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Ccc
Confidence 46777777766666 4422 222335667788888877654311 222233455555544332211 233
Q ss_pred CCEEeCCCCcCcc--ccc--cCCCCCCCCEEEccCCcCcccc-chhccCCCCC
Q 012103 261 LANFDASTNFLEG--DLS--EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKL 308 (471)
Q Consensus 261 L~~L~l~~n~~~~--~~~--~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L 308 (471)
++.+.+....... ... ....++.++.+.+..+...... ...+..++.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 3333333322211 111 4556677777777776633222 2344445555
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.25 E-value=0.0014 Score=34.45 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=14.0
Q ss_pred CCCEEeccCCcCcccCCCCC
Q 012103 451 SLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip~~~ 470 (471)
+|++|++++|+|+ .||++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 3677778888777 777765
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.09 E-value=0.00092 Score=67.43 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=7.4
Q ss_pred cCCCCCceeeccCCc
Q 012103 351 CKRGTMRDLLMLQNK 365 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~ 365 (471)
..++.++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344555555555444
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.00015 Score=64.31 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=24.5
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCc
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFS 150 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~ 150 (471)
.+.++|++-+|.++.. ....+++.|++|.|+-|+|+.. ..+.+|++|++|+|..|.+.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc
Confidence 3444445544444321 1123445555555555554421 22333444444444444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.38 E-value=0.0073 Score=31.66 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=4.6
Q ss_pred CEeecccCccc
Q 012103 405 NIIDIALNQIE 415 (471)
Q Consensus 405 ~~L~ls~n~~~ 415 (471)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.33 E-value=0.00023 Score=70.45 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccccchhc----cCC-CCCCEEEcccCcCccc----Cchh
Q 012103 260 NLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGEVPAEL----GKF-KKLVNLSLYTNKLTGA----LPQE 325 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l----~~~-~~L~~L~L~~n~l~~~----~~~~ 325 (471)
.+..+.+.+|.+..... .+...+.|..|++++|.+.+.....+ ... ..+++|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36778888887764322 56677888889999998874332222 222 4567777877877643 3445
Q ss_pred hcCCCCCCEEeccCCcccc----cCchhhc----CCCCCceeeccCCcccccc----chhhhcCCC-CcEEEccCCcCcc
Q 012103 326 LGSWAEFDFIDVSENLLTG----PIPPDMC----KRGTMRDLLMLQNKFTGEI----PATYANCLT-LQRFRVSNNSLKG 392 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n~l~~----~~p~~~~----~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~L~~n~~~~ 392 (471)
+.....++.++++.|.+.. .++..+. ...+++.|.+.++.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556778888888887631 1222222 3556777777777666321 122333344 5557777777764
Q ss_pred c----ccccccCC-CCCCEeecccCccccccc----hhhhccCCCCeeeCCCCcCcc
Q 012103 393 T----VPAGIWGL-PEVNIIDIALNQIEGPIT----KDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 393 ~----~~~~~~~~-~~L~~L~ls~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~ 440 (471)
. ....+..+ ..++.++++.|.|++... ..+..++.++.+.+++|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 22334444 556777777777766433 334455677777777777654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.64 E-value=0.00044 Score=68.49 Aligned_cols=203 Identities=22% Similarity=0.246 Sum_probs=138.9
Q ss_pred CCCeEeeccccccccC----CccccCCCCCCEEeCCCCcCccccc-----cCCCC-CCCCEEEccCCcCccc----cchh
Q 012103 236 KLWRLELYNNQLSGKL----PVGLRNLTNLANFDASTNFLEGDLS-----EVRFL-TNLVTLQLFKNQFSGE----VPAE 301 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~-~~L~~L~l~~n~l~~~----~~~~ 301 (471)
.+..+.+.+|.+.... ...+...+.|+.++++.|.+..... .+... ..+++|++..|.+++. +.+.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 4778888888886433 3446778899999999999874321 33333 6677888888888754 3455
Q ss_pred ccCCCCCCEEEcccCcCcc----cCchhhc----CCCCCCEEeccCCcccccC----chhhcCCCC-CceeeccCCcccc
Q 012103 302 LGKFKKLVNLSLYTNKLTG----ALPQELG----SWAEFDFIDVSENLLTGPI----PPDMCKRGT-MRDLLMLQNKFTG 368 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~----~~~~~~~----~~~~L~~L~L~~n~l~~~~----p~~~~~~~~-L~~L~l~~n~~~~ 368 (471)
+.....++.++++.|.+.. .++..+. ...++++|++.+|.++... ...+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6667889999999998841 1233333 4678999999999886321 123344444 6779999998875
Q ss_pred c----cchhhhcC-CCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccccc----hhhhccCCCCeeeCCC
Q 012103 369 E----IPATYANC-LTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGPIT----KDIENAKALNLLFAEY 435 (471)
Q Consensus 369 ~----~~~~~~~~-~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~----~~~~~l~~L~~L~l~~ 435 (471)
. ....+..+ +.++.++++.|.|++. +...+..+++++.+.++.|.+..... ........+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 4 23344555 6789999999999854 34456778899999999999886422 2333445666666665
Q ss_pred CcC
Q 012103 436 NRL 438 (471)
Q Consensus 436 n~l 438 (471)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.55 E-value=0.02 Score=27.84 Aligned_cols=16 Identities=44% Similarity=0.775 Sum_probs=7.7
Q ss_pred CCCEEeccCCcCcccCC
Q 012103 451 SLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip 467 (471)
+|++|++++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 5667777777765 444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.65 E-value=0.05 Score=29.77 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=12.2
Q ss_pred CCCCEEeccCCcCcccCCCC
Q 012103 450 TSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 450 ~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|+|++|+|+ .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 66654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.65 E-value=0.05 Score=29.77 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=12.2
Q ss_pred CCCCEEeccCCcCcccCCCC
Q 012103 450 TSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 450 ~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|+|++|+|+ .||..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 66654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.35 E-value=0.12 Score=27.56 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=5.0
Q ss_pred CCCeeeCCCCcCcc
Q 012103 427 ALNLLFAEYNRLSG 440 (471)
Q Consensus 427 ~L~~L~l~~n~l~~ 440 (471)
+|+.|++++|+|++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444433
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.68 E-value=0.017 Score=50.27 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+|+.||++.+.+. .+... +.-+..+..|+++.|.+. -.|..+.....++.+++..|..+..+-+....+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 456777777776655 34433 555666666777766654 456666666666666666666665544666666666666
Q ss_pred ccCCCCc
Q 012103 144 LNLSGFS 150 (471)
Q Consensus 144 l~~n~l~ 150 (471)
+..+.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.84 E-value=0.69 Score=25.10 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=4.9
Q ss_pred CCEeecccCccc
Q 012103 404 VNIIDIALNQIE 415 (471)
Q Consensus 404 L~~L~ls~n~~~ 415 (471)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.84 E-value=0.69 Score=25.10 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=4.9
Q ss_pred CCEeecccCccc
Q 012103 404 VNIIDIALNQIE 415 (471)
Q Consensus 404 L~~L~ls~n~~~ 415 (471)
|++|++++|++.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444443
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.59 E-value=0.58 Score=25.48 Aligned_cols=17 Identities=47% Similarity=0.710 Sum_probs=11.7
Q ss_pred CCCEEeccCCcCcccCCC
Q 012103 451 SLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 451 ~L~~L~l~~n~~sg~ip~ 468 (471)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4667777777777 6665
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.45 E-value=0.03 Score=48.77 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=40.7
Q ss_pred CCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeee
Q 012103 353 RGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 353 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 432 (471)
....+.||++.|++. ..-..|.-++.++.++++.|.+. ..|..+.....+..+++..|..+ ..|..++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344455555555444 22233333444555555555554 44544444444445555555444 3444555555555555
Q ss_pred CCCCcCc
Q 012103 433 AEYNRLS 439 (471)
Q Consensus 433 l~~n~l~ 439 (471)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 5555443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=0.18 Score=43.12 Aligned_cols=80 Identities=20% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc--cC-CCCCCCCEEEccCC-cCccccchhccCCCCCCEE
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EV-RFLTNLVTLQLFKN-QFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~-~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L 311 (471)
.++.++.+++.+....-+.+.+++.++.|.+.++.--++.. .+ ...++|+.|++++| +|+...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34445555554444433444444455555544443322111 11 12355666666644 3454444555555666665
Q ss_pred Eccc
Q 012103 312 SLYT 315 (471)
Q Consensus 312 ~L~~ 315 (471)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.95 E-value=0.51 Score=40.47 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=37.0
Q ss_pred CceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-ccc-cCCCCCCEeecccC-ccccccchhhhccCCCCeee
Q 012103 356 MRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGI-WGLPEVNIIDIALN-QIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 356 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~-~~~~~L~~L~ls~n-~~~~~~~~~~~~l~~L~~L~ 432 (471)
++.++-++..|..+-.+.+.+++.++.|.+.+|+--+..- ..+ .-.++|+.|++++| +|++..-..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4444444444444444444555555555555444322110 000 12345666666654 34444444555555555555
Q ss_pred CCC
Q 012103 433 AEY 435 (471)
Q Consensus 433 l~~ 435 (471)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.50 E-value=17 Score=35.73 Aligned_cols=226 Identities=16% Similarity=0.068 Sum_probs=100.1
Q ss_pred CcEEEcccCcCCCcCCccccCC---CCCCeEeeccccccc---cCCccccCCCCCCEEeCCCCcCcc--------ccc-c
Q 012103 213 LINLELSDNNISGEIPSEIGNL---VKLWRLELYNNQLSG---KLPVGLRNLTNLANFDASTNFLEG--------DLS-E 277 (471)
Q Consensus 213 L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~~---~~~~~l~~l~~L~~L~l~~n~~~~--------~~~-~ 277 (471)
+.+++++.|.....+|..+..+ ..++.++.+...+.- .-+-..+.-++++..+++.|.... ... .
T Consensus 216 lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~ 295 (553)
T KOG4242|consen 216 LTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDT 295 (553)
T ss_pred ccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccc
Confidence 5666666666665555443221 234455554443321 111223344566666666654421 001 2
Q ss_pred CCCCCCCCEEEccCCcCccccchhc-cCC-----CCCCEEEcccCcCccc-CchhhcCCCCCCEEeccCCcccccCchh-
Q 012103 278 VRFLTNLVTLQLFKNQFSGEVPAEL-GKF-----KKLVNLSLYTNKLTGA-LPQELGSWAEFDFIDVSENLLTGPIPPD- 349 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~~~~~~l-~~~-----~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~- 349 (471)
++.-.++ +|++..+....+-+.++ -.+ +.=-++|++.|...+. ....-.+-..++.|.+.+|.+.|..-..
T Consensus 296 fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vg 374 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVG 374 (553)
T ss_pred cCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccccc
Confidence 3333445 66665555443222111 000 0112345555444321 1111111234677777777766544322
Q ss_pred -hcCCCCCceeeccCCccc-----cccch----hhhcCCCCcEEEccCCcCccccc---ccccCCCCCCEeecccCcccc
Q 012103 350 -MCKRGTMRDLLMLQNKFT-----GEIPA----TYANCLTLQRFRVSNNSLKGTVP---AGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 350 -~~~~~~L~~L~l~~n~~~-----~~~~~----~~~~~~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~ls~n~~~~ 416 (471)
....+..+.+.+.+-.-. +.... .-....-+..+.++.+..+.... ......+.++.|++++|....
T Consensus 375 k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 375 KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCccc
Confidence 222344555555432210 00000 00112235666666666653222 223445667777887776543
Q ss_pred ----ccchhhhccCCCCeeeCCCCcCc
Q 012103 417 ----PITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 417 ----~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
.+|.....-..++.+..+.|...
T Consensus 455 ~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 455 GGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred CCCCcCccccCCCCccCCCCCCCCCcc
Confidence 23344444445566666666543
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.37 E-value=4.1 Score=22.25 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.3
Q ss_pred CCCCEEeccCCcCc
Q 012103 450 TSLVVIKLNNNQLT 463 (471)
Q Consensus 450 ~~L~~L~l~~n~~s 463 (471)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777776
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.77 E-value=38 Score=33.43 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCCEEeCCCCcCCccCC
Q 012103 115 KLQYLDLGNNVFSGSFP 131 (471)
Q Consensus 115 ~L~~L~l~~n~l~~~~~ 131 (471)
.+.+++++.|.....++
T Consensus 215 ~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIP 231 (553)
T ss_pred cccccccccCCCCccch
Confidence 45566666665555444
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.27 E-value=5 Score=22.23 Aligned_cols=13 Identities=15% Similarity=0.394 Sum_probs=5.8
Q ss_pred CCCEeecccCccc
Q 012103 403 EVNIIDIALNQIE 415 (471)
Q Consensus 403 ~L~~L~ls~n~~~ 415 (471)
.|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.47 E-value=11 Score=37.74 Aligned_cols=62 Identities=10% Similarity=0.041 Sum_probs=28.7
Q ss_pred CCCCceeeccCCccccc--cchhhhcCCCCcEEEccCC--cCccccccccc--CCCCCCEeecccCcccc
Q 012103 353 RGTMRDLLMLQNKFTGE--IPATYANCLTLQRFRVSNN--SLKGTVPAGIW--GLPEVNIIDIALNQIEG 416 (471)
Q Consensus 353 ~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~n--~~~~~~~~~~~--~~~~L~~L~ls~n~~~~ 416 (471)
.+.+..+.+++|++... +...-...|+|+.|+|++| .+.. ...+. ....|+.|.+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 44566666777665421 1111123456666666666 2221 11111 12335566666665553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.04 E-value=13 Score=37.28 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=16.0
Q ss_pred CCCCcEEeCCCCCCCcc--ccccccCCCCCCEEeCCCC
Q 012103 89 LQALHKLSLGFNSLYGE--ISKDLNNCVKLQYLDLGNN 124 (471)
Q Consensus 89 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n 124 (471)
.+.+..+++++|++... +..--...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555555554321 1111123355555555555
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=40.82 E-value=21 Score=19.18 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.2
Q ss_pred CCCCCEEeccCCc-Cc
Q 012103 449 ATSLVVIKLNNNQ-LT 463 (471)
Q Consensus 449 l~~L~~L~l~~n~-~s 463 (471)
+++|+.|+|++|. ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4678888888884 44
No 94
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.40 E-value=86 Score=23.55 Aligned_cols=13 Identities=31% Similarity=0.260 Sum_probs=6.8
Q ss_pred CcchhHHHHHHHH
Q 012103 1 MSTSKISLCLLLC 13 (471)
Q Consensus 1 m~~~~~~~~~~~~ 13 (471)
|+..+++++.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8855544444443
Done!