Query 012103
Match_columns 471
No_of_seqs 326 out of 4427
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 21:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012103.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012103hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.6E-62 2.6E-66 514.1 36.2 447 18-470 7-558 (768)
2 4eco_A Uncharacterized protein 100.0 4.1E-57 1.4E-61 467.6 30.2 430 19-463 26-600 (636)
3 3rgz_A Protein brassinosteroid 100.0 1.5E-54 5.1E-59 458.4 31.6 401 65-469 223-723 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 2.2E-54 7.7E-59 454.6 30.5 424 19-463 265-840 (876)
5 3t6q_A CD180 antigen; protein- 100.0 6.9E-49 2.4E-53 405.8 38.9 400 64-468 32-541 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-47 3.7E-52 396.9 35.3 397 64-468 31-538 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.7E-47 9.4E-52 393.8 37.9 399 65-467 57-564 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 1.1E-46 3.7E-51 386.6 33.2 400 64-468 27-536 (570)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-46 1.1E-50 398.6 31.6 413 52-469 13-545 (844)
10 1ziw_A TOLL-like receptor 3; i 100.0 5E-45 1.7E-49 381.9 39.0 398 64-464 24-518 (680)
11 4eco_A Uncharacterized protein 100.0 1.6E-46 5.5E-51 388.4 25.6 370 90-470 81-585 (636)
12 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-45 1.5E-49 377.4 33.4 392 64-467 55-562 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-45 5.4E-50 376.2 26.7 402 52-467 3-514 (549)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-43 4.9E-48 370.8 39.2 400 66-469 50-578 (680)
15 4ecn_A Leucine-rich repeat pro 100.0 1.2E-44 4.3E-49 380.7 27.4 371 90-471 323-826 (876)
16 2z7x_B TOLL-like receptor 1, v 100.0 8.3E-44 2.8E-48 360.9 30.3 387 65-466 21-484 (520)
17 2z63_A TOLL-like receptor 4, v 100.0 5.7E-43 1.9E-47 359.0 32.1 393 69-470 11-514 (570)
18 2z81_A CD282 antigen, TOLL-lik 100.0 8.1E-43 2.8E-47 356.1 29.9 394 58-470 2-493 (549)
19 3j0a_A TOLL-like receptor 5; m 100.0 1E-42 3.6E-47 371.6 32.0 395 68-469 7-523 (844)
20 3v47_A TOLL-like receptor 5B a 100.0 2.1E-42 7.2E-47 344.8 30.6 378 70-468 15-413 (455)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-42 2.1E-46 350.2 30.4 382 68-467 34-514 (562)
22 3v47_A TOLL-like receptor 5B a 100.0 1.2E-41 4E-46 339.4 30.1 377 52-443 7-412 (455)
23 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-41 2.5E-45 347.7 33.8 397 64-464 51-581 (635)
24 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-42 1E-46 325.7 20.5 292 19-341 2-302 (313)
25 2z7x_B TOLL-like receptor 1, v 100.0 3E-41 1E-45 342.2 29.0 365 64-443 44-485 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-39 4.1E-44 333.3 30.3 366 64-443 51-514 (562)
27 1o6v_A Internalin A; bacterial 100.0 6.9E-39 2.4E-43 319.9 33.0 344 65-440 46-389 (466)
28 1o6v_A Internalin A; bacterial 100.0 7.5E-39 2.6E-43 319.7 33.0 347 87-464 43-389 (466)
29 4g8a_A TOLL-like receptor 4; l 100.0 3E-38 1E-42 328.0 37.0 395 69-470 35-562 (635)
30 1jl5_A Outer protein YOPM; leu 100.0 7.5E-40 2.6E-44 324.3 23.4 363 64-470 10-418 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-39 2E-43 318.2 29.0 345 65-470 42-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 7.8E-37 2.7E-41 306.3 28.6 347 93-446 14-363 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2E-36 6.8E-41 300.0 29.9 322 64-446 63-394 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 2.4E-36 8.1E-41 294.8 28.8 348 43-416 3-353 (390)
35 2id5_A Lingo-1, leucine rich r 100.0 6.3E-36 2.2E-40 299.7 32.7 348 69-423 15-364 (477)
36 3oja_B Anopheles plasmodium-re 100.0 5.6E-36 1.9E-40 307.8 30.4 349 40-417 6-360 (597)
37 1jl5_A Outer protein YOPM; leu 100.0 9.2E-35 3.1E-39 287.8 33.9 349 65-470 71-436 (454)
38 3o6n_A APL1; leucine-rich repe 100.0 1.1E-34 3.7E-39 283.0 28.0 311 112-441 43-354 (390)
39 4fmz_A Internalin; leucine ric 100.0 3.5E-34 1.2E-38 275.0 30.8 307 86-439 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 4.7E-34 1.6E-38 274.1 31.4 307 110-463 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3E-34 1E-38 294.9 27.8 311 112-441 49-360 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 6.2E-35 2.1E-39 275.5 18.0 251 188-464 51-306 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 9.5E-37 3.3E-41 304.5 0.4 351 65-416 3-412 (461)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-36 7.5E-41 301.8 1.3 377 89-465 2-442 (461)
45 4fcg_A Uncharacterized protein 100.0 3.3E-34 1.1E-38 272.1 12.8 279 19-319 23-314 (328)
46 1xku_A Decorin; proteoglycan, 100.0 5.8E-32 2E-36 257.6 28.1 268 187-461 52-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-31 6.3E-36 254.1 30.3 293 91-436 32-329 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 3.5E-32 1.2E-36 259.3 25.0 267 187-461 54-331 (332)
49 2ft3_A Biglycan; proteoglycan, 100.0 1E-31 3.5E-36 256.1 25.8 289 91-437 34-331 (332)
50 2z80_A TOLL-like receptor 2, v 100.0 2.7E-30 9.2E-35 248.4 19.6 280 46-344 23-315 (353)
51 3ogk_B Coronatine-insensitive 100.0 8.5E-33 2.9E-37 284.6 1.0 376 88-465 110-528 (592)
52 2z80_A TOLL-like receptor 2, v 100.0 7.4E-30 2.5E-34 245.3 18.2 276 161-441 30-316 (353)
53 2z66_A Variable lymphocyte rec 100.0 5.1E-29 1.7E-33 234.7 22.4 262 187-449 28-297 (306)
54 2z66_A Variable lymphocyte rec 100.0 9.7E-30 3.3E-34 239.6 17.5 278 190-470 10-294 (306)
55 4fcg_A Uncharacterized protein 100.0 7.4E-29 2.5E-33 235.3 20.0 235 210-463 80-314 (328)
56 3ogk_B Coronatine-insensitive 100.0 5.1E-31 1.7E-35 271.4 1.5 406 52-465 41-503 (592)
57 1ozn_A Reticulon 4 receptor; N 100.0 3.1E-28 1.1E-32 226.8 19.9 268 165-460 14-284 (285)
58 1ozn_A Reticulon 4 receptor; N 100.0 9.9E-28 3.4E-32 223.4 20.9 224 140-368 14-239 (285)
59 3zyi_A Leucine-rich repeat-con 100.0 2.5E-27 8.4E-32 235.4 24.3 247 188-439 55-303 (452)
60 3zyj_A Leucine-rich repeat-con 100.0 2.1E-27 7.1E-32 235.1 23.6 247 188-439 44-292 (440)
61 1wwl_A Monocyte differentiatio 100.0 1.2E-29 4E-34 239.5 6.5 245 210-464 42-310 (312)
62 3zyj_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 233.0 24.8 248 163-416 44-293 (440)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.4E-29 4.7E-34 239.6 6.7 266 164-443 12-280 (317)
64 3zyi_A Leucine-rich repeat-con 100.0 4.4E-27 1.5E-31 233.6 25.0 248 163-416 55-304 (452)
65 2p1m_B Transport inhibitor res 100.0 8.1E-31 2.8E-35 270.0 -2.5 394 65-463 66-519 (594)
66 3g06_A SSPH2 (leucine-rich rep 100.0 1.3E-26 4.5E-31 236.3 26.3 268 138-450 41-308 (622)
67 3g06_A SSPH2 (leucine-rich rep 100.0 2.6E-26 8.8E-31 234.2 28.0 270 114-427 40-309 (622)
68 1wwl_A Monocyte differentiatio 99.9 4.9E-29 1.7E-33 235.2 4.9 254 158-440 39-310 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-28 3.7E-33 233.4 6.4 237 159-410 31-270 (317)
70 2o6q_A Variable lymphocyte rec 99.9 6.2E-26 2.1E-30 209.4 22.3 215 50-271 2-217 (270)
71 3oja_A Leucine-rich immune mol 99.9 1.4E-27 4.9E-32 238.5 10.8 234 188-434 35-270 (487)
72 2p1m_B Transport inhibitor res 99.9 3.4E-29 1.1E-33 257.9 -3.6 392 65-462 105-543 (594)
73 3oja_A Leucine-rich immune mol 99.9 1.6E-26 5.3E-31 231.0 15.4 236 210-458 33-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 204.5 19.7 225 215-443 11-241 (276)
75 3rfs_A Internalin B, repeat mo 99.9 2.3E-25 7.9E-30 205.7 14.8 227 213-451 21-247 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 2E-24 6.9E-29 200.0 20.8 223 192-418 12-240 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1.1E-23 3.6E-28 194.4 22.2 201 236-439 17-218 (270)
78 2ca6_A RAN GTPase-activating p 99.9 1E-25 3.5E-30 219.1 8.5 248 203-466 24-319 (386)
79 1p9a_G Platelet glycoprotein I 99.9 8.8E-24 3E-28 196.6 21.2 201 257-463 8-208 (290)
80 2ast_B S-phase kinase-associat 99.9 5.5E-25 1.9E-29 209.9 12.4 232 235-470 70-313 (336)
81 3rfs_A Internalin B, repeat mo 99.9 3.2E-24 1.1E-28 198.0 16.7 210 207-427 37-247 (272)
82 3goz_A Leucine-rich repeat-con 99.9 3.1E-25 1.1E-29 213.6 9.9 253 166-419 2-301 (362)
83 3goz_A Leucine-rich repeat-con 99.9 3.4E-25 1.2E-29 213.4 7.1 280 191-470 2-344 (362)
84 1p9a_G Platelet glycoprotein I 99.9 7.8E-23 2.7E-27 190.2 21.4 201 209-415 8-208 (290)
85 2ca6_A RAN GTPase-activating p 99.9 3.8E-25 1.3E-29 215.1 5.9 245 177-442 22-319 (386)
86 2ast_B S-phase kinase-associat 99.9 2.2E-24 7.5E-29 205.7 9.6 233 211-448 70-315 (336)
87 3m19_A Variable lymphocyte rec 99.9 1.3E-22 4.6E-27 184.9 19.0 190 51-249 3-193 (251)
88 4glp_A Monocyte differentiatio 99.9 2.3E-23 8E-28 196.1 13.3 199 260-464 92-308 (310)
89 3m19_A Variable lymphocyte rec 99.9 2.5E-22 8.6E-27 183.1 18.5 180 260-441 15-194 (251)
90 4glp_A Monocyte differentiatio 99.9 1.2E-22 4E-27 191.3 16.7 199 236-440 92-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 1.6E-22 5.4E-27 183.0 15.4 196 260-461 32-237 (239)
92 1h6u_A Internalin H; cell adhe 99.9 4E-22 1.4E-26 187.3 18.0 207 217-440 25-231 (308)
93 1h6u_A Internalin H; cell adhe 99.9 4.5E-22 1.5E-26 186.9 17.1 196 207-417 37-232 (308)
94 2xwt_C Thyrotropin receptor; s 99.9 7.4E-22 2.5E-26 178.6 17.5 196 90-292 31-236 (239)
95 2o6s_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 169.3 14.6 176 282-468 28-203 (208)
96 2o6s_A Variable lymphocyte rec 99.9 4.7E-21 1.6E-25 169.4 13.1 177 285-471 10-186 (208)
97 3cvr_A Invasion plasmid antige 99.8 7E-21 2.4E-25 191.8 15.4 188 236-450 60-254 (571)
98 3cvr_A Invasion plasmid antige 99.8 2.1E-20 7.3E-25 188.3 15.8 199 43-273 33-244 (571)
99 4ay9_X Follicle-stimulating ho 99.8 2.9E-20 9.8E-25 178.0 14.9 240 190-437 12-257 (350)
100 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 171.0 18.9 122 93-218 12-135 (350)
101 3e6j_A Variable lymphocyte rec 99.8 5.6E-19 1.9E-23 158.3 18.0 165 43-226 9-174 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-19 8.2E-24 159.6 14.6 155 285-442 14-169 (220)
103 1h6t_A Internalin B; cell adhe 99.8 4.6E-19 1.6E-23 164.9 16.1 187 239-440 28-214 (291)
104 2xot_A Amphoterin-induced prot 99.8 5.1E-19 1.7E-23 170.0 15.4 176 262-439 21-202 (361)
105 2v9t_B SLIT homolog 2 protein 99.8 6.2E-19 2.1E-23 157.0 14.8 152 285-439 14-165 (220)
106 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.2E-23 155.5 15.8 156 283-442 20-175 (229)
107 1m9s_A Internalin B; cell inva 99.8 7.2E-19 2.4E-23 179.1 14.3 192 212-418 22-213 (605)
108 4ezg_A Putative uncharacterize 99.8 1.3E-18 4.5E-23 152.1 13.7 155 303-464 41-195 (197)
109 1h6t_A Internalin B; cell adhe 99.8 2.1E-18 7.3E-23 160.4 15.9 171 208-391 43-213 (291)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-18 9.1E-23 152.8 15.6 156 262-419 14-170 (220)
111 2v9t_B SLIT homolog 2 protein 99.8 3.1E-18 1.1E-22 152.4 15.2 153 262-416 14-166 (220)
112 1m9s_A Internalin B; cell inva 99.8 4E-18 1.4E-22 173.6 17.5 190 189-393 23-212 (605)
113 4b8c_D Glucose-repressible alc 99.8 4.4E-20 1.5E-24 192.7 2.3 260 20-295 129-404 (727)
114 2xot_A Amphoterin-induced prot 99.8 6.5E-18 2.2E-22 162.3 16.6 177 237-416 20-203 (361)
115 4ezg_A Putative uncharacterize 99.8 5.6E-18 1.9E-22 148.1 13.1 150 282-439 44-194 (197)
116 1xeu_A Internalin C; cellular 99.7 9.8E-18 3.3E-22 153.4 10.3 170 258-441 18-187 (263)
117 1w8a_A SLIT protein; signaling 99.7 2.1E-17 7.2E-22 143.7 11.8 132 309-443 11-143 (192)
118 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.9E-24 183.9 -4.5 195 256-456 346-566 (567)
119 2ell_A Acidic leucine-rich nuc 99.7 4E-17 1.4E-21 138.8 10.6 137 330-469 24-165 (168)
120 1dce_A Protein (RAB geranylger 99.7 2.9E-19 9.7E-24 181.0 -3.2 182 279-467 346-550 (567)
121 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.5E-22 150.8 9.4 169 210-392 18-186 (263)
122 4b8c_D Glucose-repressible alc 99.7 9.4E-18 3.2E-22 175.1 5.3 178 277-464 219-405 (727)
123 3sb4_A Hypothetical leucine ri 99.7 2.7E-17 9.2E-22 155.9 7.5 103 329-433 225-328 (329)
124 2je0_A Acidic leucine-rich nuc 99.7 1.6E-16 5.3E-21 132.2 9.9 128 330-459 17-149 (149)
125 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 8.8E-21 133.8 11.0 132 306-439 24-160 (168)
126 1w8a_A SLIT protein; signaling 99.7 4.9E-16 1.7E-20 135.0 12.5 171 285-463 11-183 (192)
127 3sb4_A Hypothetical leucine ri 99.7 2E-16 6.8E-21 149.9 10.1 283 161-457 24-328 (329)
128 2wfh_A SLIT homolog 2 protein 99.7 8.6E-16 2.9E-20 133.5 13.0 127 309-439 13-139 (193)
129 2o6r_A Variable lymphocyte rec 99.7 7.2E-16 2.5E-20 132.2 12.3 133 308-443 9-141 (177)
130 2je0_A Acidic leucine-rich nuc 99.6 6.3E-16 2.1E-20 128.6 10.8 127 306-434 17-148 (149)
131 4fs7_A Uncharacterized protein 99.6 7.7E-14 2.6E-18 135.5 24.4 332 80-455 61-393 (394)
132 2wfh_A SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 128.0 13.1 128 285-416 13-140 (193)
133 2o6r_A Variable lymphocyte rec 99.6 9.6E-15 3.3E-19 125.1 13.5 133 284-419 9-141 (177)
134 1ds9_A Outer arm dynein; leuci 99.6 2.6E-17 9E-22 144.0 -3.3 153 304-463 16-185 (198)
135 4fdw_A Leucine rich hypothetic 99.6 1.6E-13 5.5E-18 132.9 21.8 262 161-437 112-381 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-15 1.9E-19 126.5 9.8 133 302-439 15-153 (176)
137 4fs7_A Uncharacterized protein 99.6 5.5E-13 1.9E-17 129.5 25.1 321 65-430 71-392 (394)
138 4fdw_A Leucine rich hypothetic 99.6 6.1E-13 2.1E-17 128.8 22.7 237 212-459 136-379 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.1E-14 7.1E-19 122.9 10.5 130 328-462 17-152 (176)
140 1ds9_A Outer arm dynein; leuci 99.5 3.4E-16 1.2E-20 136.8 -3.6 150 283-439 19-185 (198)
141 3g39_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 116.4 10.3 107 332-441 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.9E-13 9.9E-18 115.3 10.1 105 333-440 15-119 (174)
143 3un9_A NLR family member X1; l 99.4 2.7E-14 9.2E-19 137.0 3.4 96 354-449 155-262 (372)
144 3g39_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 112.3 11.1 109 307-418 10-118 (170)
145 3un9_A NLR family member X1; l 99.4 5.1E-14 1.7E-18 135.0 3.9 159 306-464 72-253 (372)
146 2r9u_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 111.7 10.4 107 308-417 14-120 (174)
147 4gt6_A Cell surface protein; l 99.4 1.3E-10 4.5E-15 112.7 24.1 132 324-462 259-390 (394)
148 4gt6_A Cell surface protein; l 99.4 3.1E-10 1.1E-14 110.0 25.9 333 81-439 54-391 (394)
149 2ifg_A High affinity nerve gro 99.2 4E-11 1.4E-15 114.2 10.3 105 333-440 11-117 (347)
150 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 114.3 8.9 106 309-417 11-118 (347)
151 4h09_A Hypothetical leucine ri 99.1 4.1E-08 1.4E-12 94.5 25.4 130 277-410 212-341 (379)
152 2ra8_A Uncharacterized protein 99.0 4.7E-10 1.6E-14 106.6 9.6 199 259-461 107-341 (362)
153 2ra8_A Uncharacterized protein 99.0 6.8E-10 2.3E-14 105.4 9.3 180 254-437 134-341 (362)
154 4h09_A Hypothetical leucine ri 99.0 2E-07 6.7E-12 89.7 26.6 315 109-450 41-356 (379)
155 1io0_A Tropomodulin; LRR prote 98.8 5.4E-09 1.8E-13 89.6 5.8 116 324-439 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.5E-08 5.3E-13 86.8 5.5 114 349-462 31-163 (185)
157 3rw6_A Nuclear RNA export fact 98.7 7.5E-11 2.6E-15 106.3 -9.5 21 52-72 77-97 (267)
158 3rw6_A Nuclear RNA export fact 98.5 4.4E-08 1.5E-12 88.2 4.0 80 375-456 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.1E-11 73.2 4.8 84 354-437 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 70.6 3.8 83 331-413 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 3.1E-05 1.1E-09 65.9 6.0 114 326-439 37-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 8.5E-05 2.9E-09 63.1 6.5 113 302-414 37-169 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0025 8.6E-08 50.4 5.5 57 381-439 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.007 2.4E-07 47.8 6.2 57 357-415 11-68 (130)
165 2lz0_A Uncharacterized protein 46.1 17 0.00057 26.5 3.3 46 390-436 8-53 (100)
166 2lz0_A Uncharacterized protein 37.5 44 0.0015 24.2 4.4 14 206-219 15-28 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.6e-62 Score=514.14 Aligned_cols=447 Identities=30% Similarity=0.451 Sum_probs=331.3
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccc---cCc-----------
Q 012103 18 TCINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGT---LPF----------- 83 (471)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~---l~~----------- 83 (471)
+++.++|++||++||+++.+|. .+++|..+.+||.|.||+|+ .++|++|+|++..+.|. +++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 4456789999999999998764 78999988999999999998 68999999999999886 442
Q ss_pred -----------ccccCCCCCcEEeCCCCCCCccccc--cccCCCCCCEEeCCCCcCCccCC-CC-CCCCCCCEEEccCCC
Q 012103 84 -----------DSICQLQALHKLSLGFNSLYGEISK--DLNNCVKLQYLDLGNNVFSGSFP-EI-SSLNELQHLYLNLSG 148 (471)
Q Consensus 84 -----------~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~l-~~l~~L~~L~l~~n~ 148 (471)
..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+..+ .+ .++++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 3488899999999999999988888 88999999999999998887666 33 566666666666666
Q ss_pred CcccCCc------------------------ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC
Q 012103 149 FSGVFPW------------------------MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP 204 (471)
Q Consensus 149 l~~~~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 204 (471)
+++..+. ..+..+++|++|++++|.+. ..+|. +..+++|++|++++|.+++.+|
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCC-SCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCC-CCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 5543320 01245566666666666662 23333 6666666666666666665555
Q ss_pred ccccCCCCCcEEEcccCcCC----------------------CcCCccccCC-CCCCeEeeccccccccCCccccCCCCC
Q 012103 205 VEIGNLTELINLELSDNNIS----------------------GEIPSEIGNL-VKLWRLELYNNQLSGKLPVGLRNLTNL 261 (471)
Q Consensus 205 ~~l~~l~~L~~L~L~~n~l~----------------------~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L 261 (471)
..+..+++|++|++++|.+. +.+|..+... ++|++|++++|.+++.+|..+.++++|
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L 320 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred HHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence 55555555555555555444 3455555443 667777777777766667777777777
Q ss_pred CEEeCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccC---------------------------CCCCCEEE
Q 012103 262 ANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGK---------------------------FKKLVNLS 312 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~---------------------------~~~L~~L~ 312 (471)
++|++++|.+.+.++ .+..+++|++|++++|.+++.+|..+.. +++|++|+
T Consensus 321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~ 400 (768)
T 3rgz_A 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400 (768)
T ss_dssp CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence 777777777765555 3666666777777666666555544433 34566666
Q ss_pred cccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcc
Q 012103 313 LYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG 392 (471)
Q Consensus 313 L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~ 392 (471)
+++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 66666666666677777777777777777777777777777888888888888887788888888888888888888888
Q ss_pred cccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 393 TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 393 ~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
.+|..+..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+..+++|+.|++++|+++|.||.++
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888888765
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-57 Score=467.61 Aligned_cols=430 Identities=20% Similarity=0.271 Sum_probs=379.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCcee---eceEeCCCCCCEEEEEcCCCCCccccCcccccC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIF-------SSWVSNNHFCNF---TGITCNSDSSFVQEIELSNRNLKGTLPFDSICQ 88 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~~---~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~ 88 (471)
+...+|++||.++|.++.++.|... .+|..+.++|.| .||.|+. .++|++|+|+++++.|.+|+. +++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~-l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDA-IGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGG-GGG
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChH-Hhc
Confidence 3345799999999999987766543 389999999999 9999987 589999999999999999976 999
Q ss_pred CCCCcEEeCCCCCC------------------------------------------------------------------
Q 012103 89 LQALHKLSLGFNSL------------------------------------------------------------------ 102 (471)
Q Consensus 89 l~~L~~L~l~~~~~------------------------------------------------------------------ 102 (471)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999999843
Q ss_pred ------------CccccccccCCCCCCEEeCCCCcCCc------------------cCCCCC--CCCCCCEEEccCCCCc
Q 012103 103 ------------YGEISKDLNNCVKLQYLDLGNNVFSG------------------SFPEIS--SLNELQHLYLNLSGFS 150 (471)
Q Consensus 103 ------------~~~~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~l~--~l~~L~~L~l~~n~l~ 150 (471)
++ +|..++++++|++|++++|.+++ .+..+. ++++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 34 78889999999999999999999 444888 9999999999999999
Q ss_pred ccCCcccccCCCCCcEEEccCCC-CCCC-CCCccccCC------CCCCEEEcccccCcccCCc--cccCCCCCcEEEccc
Q 012103 151 GVFPWMSLGNMTNLVSLSVGDNP-FDPT-PFPDQVVKL------NKLNWLYLTNCSIDGQIPV--EIGNLTELINLELSD 220 (471)
Q Consensus 151 ~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~ 220 (471)
+..| ..++++++|++|++++|+ + .+ .+|..++.+ ++|++|++++|.++ .+|. .+..+++|+.|++++
T Consensus 263 ~~~p-~~l~~l~~L~~L~Ls~n~~l-~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 263 TKLP-TFLKALPEMQLINVACNRGI-SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCC-TTTTTCSSCCEEECTTCTTS-CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred ccCh-HHHhcCCCCCEEECcCCCCC-ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 9999 899999999999999998 7 34 578877776 99999999999999 8888 899999999999999
Q ss_pred CcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCC-CCEEeCCCCcCccccccCCCCC--CCCEEEccCCcCccc
Q 012103 221 NNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN-LANFDASTNFLEGDLSEVRFLT--NLVTLQLFKNQFSGE 297 (471)
Q Consensus 221 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~l~~n~l~~~ 297 (471)
|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++..+..+...+ +|++|++++|.+++.
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCc
Confidence 99998999 8999999999999999999 78888999999 9999999999984444555544 899999999999998
Q ss_pred cchhcc-------CCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCC--------CCceeec
Q 012103 298 VPAELG-------KFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRG--------TMRDLLM 361 (471)
Q Consensus 298 ~~~~l~-------~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~--------~L~~L~l 361 (471)
.|..+. .+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+|....... +|+.|++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 888887 7789999999999999 4554 4566899999999999998 7776554322 8999999
Q ss_pred cCCccccccchhhh--cCCCCcEEEccCCcCcccccccccCCCCCCEeec------ccCccccccchhhhccCCCCeeeC
Q 012103 362 LQNKFTGEIPATYA--NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI------ALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 362 ~~n~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l------s~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|++.+.+|..+.++++|+.|++
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEEC
Confidence 999999 7888776 99999999999999996 8999999999999999 568889999999999999999999
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
++|++ +.+|..+. ++|+.|++++|++.
T Consensus 574 s~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 99999 58898866 79999999999887
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-54 Score=458.41 Aligned_cols=401 Identities=31% Similarity=0.489 Sum_probs=290.1
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-------------
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP------------- 131 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------- 131 (471)
..+++|+++++.+.|.+|.. +..+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L 299 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEE
T ss_pred CCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEE
Confidence 45666777776666555543 666666666666666655544432 44444555555444444433
Q ss_pred -------------CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCC-CCCEEEcccc
Q 012103 132 -------------EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN-KLNWLYLTNC 197 (471)
Q Consensus 132 -------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n 197 (471)
.+.++++|++|++++|.+++..|...+.++++|++|++++|.+ .+.+|..+..++ +|++|++++|
T Consensus 300 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~~L~~L~Ls~N 378 (768)
T 3rgz_A 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF-SGELPESLTNLSASLLTLDLSSN 378 (768)
T ss_dssp ECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-EECCCTTHHHHTTTCSEEECCSS
T ss_pred ECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-CccccHHHHhhhcCCcEEEccCC
Confidence 3444444444444444444444422244444455555544444 223344444443 4555555555
Q ss_pred cCcccCCccccC--CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc
Q 012103 198 SIDGQIPVEIGN--LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL 275 (471)
Q Consensus 198 ~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (471)
.+.+.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+.+..
T Consensus 379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 458 (768)
T 3rgz_A 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458 (768)
T ss_dssp EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC
Confidence 555444444444 556777777777777777777777788888888888887777777888888888888888887766
Q ss_pred c-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCC
Q 012103 276 S-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRG 354 (471)
Q Consensus 276 ~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~ 354 (471)
+ .+..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|..++.++
T Consensus 459 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 6 677778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCceeeccCCccccccchhh------------------------------------------------------------
Q 012103 355 TMRDLLMLQNKFTGEIPATY------------------------------------------------------------ 374 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~------------------------------------------------------------ 374 (471)
+|+.|++++|++.+.+|..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 88888888888776666543
Q ss_pred ----------hcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchh
Q 012103 375 ----------ANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPE 444 (471)
Q Consensus 375 ----------~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 444 (471)
..+++|+.|++++|+++|.+|..++.++.|+.|++++|+++|.+|..++++++|+.|++++|+++|.+|+
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 3356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCEEeccCCcCcccCCCC
Q 012103 445 EISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
.+..++.|++|++++|+++|.||+.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred HHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999974
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-54 Score=454.63 Aligned_cols=424 Identities=21% Similarity=0.277 Sum_probs=356.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--cee------------eceEeCCCCCCEEEEEcCCCCCcc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNN-----HF--CNF------------TGITCNSDSSFVQEIELSNRNLKG 79 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~gv~c~~~~~~v~~L~L~~~~l~g 79 (471)
++..+|++||++||+++.+| +|+.+. ++ |.| .||.|+. .++|++|+|+++++.|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG 337 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred ccchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence 34568999999999999776 564332 45 999 9999997 7899999999999999
Q ss_pred ccCcccccCCCCCcEEeC-CCCCCCcc-----------------------------------------------------
Q 012103 80 TLPFDSICQLQALHKLSL-GFNSLYGE----------------------------------------------------- 105 (471)
Q Consensus 80 ~l~~~~~~~l~~L~~L~l-~~~~~~~~----------------------------------------------------- 105 (471)
.+|+. ++++++|++|++ ++|.+.|.
T Consensus 338 ~ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RVPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cCchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 99976 999999999999 77654333
Q ss_pred -----------------------ccccccCCCCCCEEeCCCCcCCc------------------cCCCCC--CCCCCCEE
Q 012103 106 -----------------------ISKDLNNCVKLQYLDLGNNVFSG------------------SFPEIS--SLNELQHL 142 (471)
Q Consensus 106 -----------------------~~~~~~~l~~L~~L~l~~n~l~~------------------~~~~l~--~l~~L~~L 142 (471)
+|..++++++|++|+|++|.+++ .++.+. ++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 77888999999999999999998 344766 89999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCC-CCCC-CCCccccCC-------CCCCEEEcccccCcccCCc--cccCCC
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP-FDPT-PFPDQVVKL-------NKLNWLYLTNCSIDGQIPV--EIGNLT 211 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~l~~l~ 211 (471)
++++|.+.+..| ..+.++++|++|++++|+ + .+ .+|..+..+ ++|++|++++|.+. .+|. .+..++
T Consensus 497 ~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 497 ELYNCPNMTQLP-DFLYDLPELQSLNIACNRGI-SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEESCTTCCSCC-GGGGGCSSCCEEECTTCTTS-CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred ECcCCCCCccCh-HHHhCCCCCCEEECcCCCCc-ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 999999999888 889999999999999998 6 33 466655544 49999999999999 7888 899999
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCC-CCEEeCCCCcCccccccCCCCC--CCCEEE
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTN-LANFDASTNFLEGDLSEVRFLT--NLVTLQ 288 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~~--~L~~L~ 288 (471)
+|+.|++++|.+. .+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.+...+..+...+ +|+.|+
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEE
Confidence 9999999999998 788 7889999999999999998 78888888888 9999999999884443555544 499999
Q ss_pred ccCCcCccccchhc---c--CCCCCCEEEcccCcCcccCchhh-cCCCCCCEEeccCCcccccCchhhcCCC--------
Q 012103 289 LFKNQFSGEVPAEL---G--KFKKLVNLSLYTNKLTGALPQEL-GSWAEFDFIDVSENLLTGPIPPDMCKRG-------- 354 (471)
Q Consensus 289 l~~n~l~~~~~~~l---~--~~~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p~~~~~~~-------- 354 (471)
+++|.+.+.+|... . ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++ .+|..+....
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 99999987665332 2 3358999999999998 566654 47889999999999998 7777665433
Q ss_pred CCceeeccCCccccccchhhh--cCCCCcEEEccCCcCcccccccccCCCCCCEeeccc------CccccccchhhhccC
Q 012103 355 TMRDLLMLQNKFTGEIPATYA--NCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL------NQIEGPITKDIENAK 426 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~------n~~~~~~~~~~~~l~ 426 (471)
+|+.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++ |++.+.+|..+.+++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 8999999999998 7788776 89999999999999996 788888999999999976 778888999999999
Q ss_pred CCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 427 ALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 427 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
+|+.|++++|++ +.+|..+. ++|+.|+|++|++.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 999999999999 68888866 68999999999887
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.9e-49 Score=405.75 Aligned_cols=400 Identities=20% Similarity=0.237 Sum_probs=255.1
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+..++.|+++++.+++ +++..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+ .+.++++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSE-ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCc-CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 4578999999999994 444559999999999999999998889999999999999999999998877 88999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCc--EEEccc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELI--NLELSD 220 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~ 220 (471)
++++|.+++..+ ..+.++++|++|++++|.+.....|.... +++|++|++++|.+.+..+..+..+++|+ .|++++
T Consensus 111 ~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 111 FFIQTGISSIDF-IPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp ECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eccccCcccCCc-chhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccccChhhhhhhcccceeEEecCC
Confidence 999999998766 67889999999999999985544444444 78888888888877765555566555555 555555
Q ss_pred CcCCCcCC------------------------------------------------------------------------
Q 012103 221 NNISGEIP------------------------------------------------------------------------ 228 (471)
Q Consensus 221 n~l~~~~p------------------------------------------------------------------------ 228 (471)
|.+.+..|
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 54443222
Q ss_pred ---ccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-c-------------------------CC
Q 012103 229 ---SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-E-------------------------VR 279 (471)
Q Consensus 229 ---~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~-------------------------~~ 279 (471)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ . +.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence 12333444555555555444 344444444444444444444443322 3 33
Q ss_pred CCCCCCEEEccCCcCcccc--chhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCC
Q 012103 280 FLTNLVTLQLFKNQFSGEV--PAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTM 356 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L 356 (471)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 4444444444444444332 334444555555555555555444445555555555555555555443322 4455555
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCccc---ccccccCCCCCCEeecccCccccccchhhhccCCCCeeeC
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT---VPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~---~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
+.|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+.++++|+.|++
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 5555555555555555555566666666666665542 1234555666666666666666555566666666666666
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++|++++..|+.+..++.| .|++++|++++..|.
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~ 541 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHh
Confidence 6666666666666666666 666666666654443
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-47 Score=396.85 Aligned_cols=397 Identities=19% Similarity=0.155 Sum_probs=258.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
..++++|+++++.+++ ++...+.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..| .+.++++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4679999999999984 555559999999999999999998888999999999999999999999877 89999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCc----EEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELI----NLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L 218 (471)
++++|.+++..+ ..++++++|++|++++|.+....+|..+..+++|++|++++|.+++..+..+..+++|+ .+++
T Consensus 110 ~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 110 VAVETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp ECTTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EccCCccccccc-cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 999999998887 67999999999999999996667899999999999999999998876665554333222 3444
Q ss_pred ccCcCCCcCCc---------------------------------------------------------------------
Q 012103 219 SDNNISGEIPS--------------------------------------------------------------------- 229 (471)
Q Consensus 219 ~~n~l~~~~p~--------------------------------------------------------------------- 229 (471)
++|.+++..+.
T Consensus 189 ~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred cCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 44433321111
Q ss_pred ---------------------------------cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc
Q 012103 230 ---------------------------------EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS 276 (471)
Q Consensus 230 ---------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 276 (471)
.+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+..
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-
Confidence 122233444444444444 23331 2 3344444444444222211
Q ss_pred cCCCCCCCCEEEccCCcCccc--cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGE--VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKR 353 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~ 353 (471)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 334455566666666665543 24555555666666666665553 34445555556666666665554444 345555
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcc-cccccccCCCCCCEeecccCccccccchhhhccCCCCeee
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKG-TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLF 432 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~ 432 (471)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+.++++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 556666666665555555555555566666666665554 2455555555666666666655555555555555666666
Q ss_pred CCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 433 AEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 433 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
+++|++++..|..+..+++|++|++++|+++ .+|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 6666655555555555555666666665555 4444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-47 Score=393.80 Aligned_cols=399 Identities=19% Similarity=0.151 Sum_probs=307.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++.|+++++.+.+..| ..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+ .+.++++|++|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred ccceEEECCCCccceeCh-hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 456677777776664333 336667777777777776666666666666666666666666665533 555666666666
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCC--------------------------CCC-------------------
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFD--------------------------PTP------------------- 178 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~--------------------------~~~------------------- 178 (471)
+++|.+++... ..+..+++|++|++++|.+. ...
T Consensus 136 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 136 LGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp CCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred CCCCcccccCc-ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 66666555322 12223445555555444432 100
Q ss_pred -------------------------------------------------------CCccccCCCCCCEEEcccccCcccC
Q 012103 179 -------------------------------------------------------FPDQVVKLNKLNWLYLTNCSIDGQI 203 (471)
Q Consensus 179 -------------------------------------------------------~~~~l~~l~~L~~L~l~~n~l~~~~ 203 (471)
.+..+..+++|++|++++|.++ .+
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC
Confidence 0111445566777777777766 56
Q ss_pred CccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCc-cccCCCCCCEEeCCCCcCcccc--c-cCC
Q 012103 204 PVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPV-GLRNLTNLANFDASTNFLEGDL--S-EVR 279 (471)
Q Consensus 204 ~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~~--~-~~~ 279 (471)
|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. + .+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 66677777777777777777766666777777777777777777655544 3778889999999999888764 3 788
Q ss_pred CCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCCCCce
Q 012103 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRD 358 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 358 (471)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 999999999999999988899999999999999999999877654 4888999999999999999888889999999999
Q ss_pred eeccCCccccc---cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 359 LLMLQNKFTGE---IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 359 L~l~~n~~~~~---~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.+++.| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 99999999863 23578999999999999999998889999999999999999999999999999999999 999999
Q ss_pred CcCcccchhhhhcCCCCCEEeccCCcCcccCC
Q 012103 436 NRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 436 n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
|++++..|..+..+++|+.|++++|++++..+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999999999999997654
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=386.57 Aligned_cols=400 Identities=17% Similarity=0.155 Sum_probs=333.2
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+.+++.|+++++.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++|.+++.++ .+.++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 457999999999998 4555559999999999999999998878889999999999999999999887 89999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCC----cEEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL----INLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L 218 (471)
++++|.+++..+ ..++++++|++|++++|.+....+|..+..+++|++|++++|.+.+..+..+..+++| +.+++
T Consensus 106 ~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCC-ccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 999999998766 5799999999999999999666789999999999999999999987777777777776 77777
Q ss_pred ccCcCCCcCC----------------------------------------------------------------------
Q 012103 219 SDNNISGEIP---------------------------------------------------------------------- 228 (471)
Q Consensus 219 ~~n~l~~~~p---------------------------------------------------------------------- 228 (471)
++|.+.+..|
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 7776654333
Q ss_pred -----------ccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-c-------------------
Q 012103 229 -----------SEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-E------------------- 277 (471)
Q Consensus 229 -----------~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~------------------- 277 (471)
..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+..... .
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc
Confidence 33444566777777777766 455555555 66666666665542211 0
Q ss_pred CCCCCCCCEEEccCCcCcccc--chhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCCC
Q 012103 278 VRFLTNLVTLQLFKNQFSGEV--PAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKRG 354 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~~~--~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~~ 354 (471)
...+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..| ..+..++
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 145677888888888877543 66777888899999998888854444 8888999999999999886655 4678889
Q ss_pred CCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeC
Q 012103 355 TMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 355 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
+|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+.++++|+.|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999999888889999999999999999997 578889999999999999999999988999999999999999
Q ss_pred CCCcCcccchhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 434 EYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 434 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999988888899999999999999999998885
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-46 Score=398.59 Aligned_cols=413 Identities=20% Similarity=0.198 Sum_probs=270.8
Q ss_pred CceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccc-cccccCCCCCCEEeCCCCcCCccC
Q 012103 52 FCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI-SKDLNNCVKLQYLDLGNNVFSGSF 130 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~ 130 (471)
.|.|..|.+ ...++++|+|++|.+++..+ ..+.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+++..
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 356778877 37889999999999985444 45999999999999999776666 778999999999999999999987
Q ss_pred C-CCCCCCCCCEEEccCCCCcccCCc-ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc
Q 012103 131 P-EISSLNELQHLYLNLSGFSGVFPW-MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG 208 (471)
Q Consensus 131 ~-~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 208 (471)
| .+.++++|++|++++|.+++..+. ..+.++++|++|++++|.+.....+..+..+++|++|++++|.+.+..+..+.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~ 169 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc
Confidence 7 899999999999999999986551 34899999999999999996655557889999999999999999877777776
Q ss_pred CC--CCCcEEEcccCcCCCcCCccccCCCC------CCeEeeccccccccCCccccC-----------------------
Q 012103 209 NL--TELINLELSDNNISGEIPSEIGNLVK------LWRLELYNNQLSGKLPVGLRN----------------------- 257 (471)
Q Consensus 209 ~l--~~L~~L~L~~n~l~~~~p~~~~~l~~------L~~L~l~~n~l~~~~~~~l~~----------------------- 257 (471)
.+ ++|+.|++++|.+.+..|..+..+.+ |++|++++|.+.+..+..+..
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccc
Confidence 65 66777777777776666555554443 666666666554333322211
Q ss_pred ---------------CCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc
Q 012103 258 ---------------LTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA 321 (471)
Q Consensus 258 ---------------l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~ 321 (471)
.++|+.|++++|.+.+..+ .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 1456666666666555444 455566666666666666655555555566666666666666555
Q ss_pred CchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc------------------c-------------
Q 012103 322 LPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE------------------I------------- 370 (471)
Q Consensus 322 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~------------------~------------- 370 (471)
.+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls 409 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecc
Confidence 555555556666666666655544444455555555555555544321 0
Q ss_pred ---------chhhhcCCCCcEEEccCCcCccccc------------------------------ccccCCCCCCEeeccc
Q 012103 371 ---------PATYANCLTLQRFRVSNNSLKGTVP------------------------------AGIWGLPEVNIIDIAL 411 (471)
Q Consensus 371 ---------~~~~~~~~~L~~L~L~~n~~~~~~~------------------------------~~~~~~~~L~~L~ls~ 411 (471)
+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCC
Confidence 1112355666666666666653222 2234445555555555
Q ss_pred CccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 412 NQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 412 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
|++++..|..+.++++|+.|++++|++++..|..+. ++|+.|++++|+++|.+|..
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 555555555555555555555555555543333333 45555555555555555544
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-45 Score=381.85 Aligned_cols=398 Identities=18% Similarity=0.212 Sum_probs=265.7
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+.+++.|+++++.++ .++...+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++.++ .+.++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 467999999999998 5666669999999999999999998889999999999999999999998777 69999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc--CCCCCcEEEccc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG--NLTELINLELSD 220 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~ 220 (471)
++++|.+++..+ ..++++++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+. .+++|+.|++++
T Consensus 103 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 103 HLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp ECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred ECCCCccCccCh-hHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 999999988777 78999999999999999984 44567788899999999999998876665543 557888888888
Q ss_pred CcCCCcCCccccCC---------------------------CCCCeEeeccccccccCCccccCCCC--CCEEeCCCCcC
Q 012103 221 NNISGEIPSEIGNL---------------------------VKLWRLELYNNQLSGKLPVGLRNLTN--LANFDASTNFL 271 (471)
Q Consensus 221 n~l~~~~p~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~ 271 (471)
|.+.+..|..+..+ ++|++|++++|.+.+..+..+..++. |++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 88877666555433 34555566666666555555555533 66666666666
Q ss_pred ccccc-cCCCCCCCCEEEccCCcCccccchhcc---------------------------------CCCCCCEEEcccCc
Q 012103 272 EGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELG---------------------------------KFKKLVNLSLYTNK 317 (471)
Q Consensus 272 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~---------------------------------~~~~L~~L~L~~n~ 317 (471)
.+..+ .+..+++|++|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 65554 556666666666666666655444444 44555555555566
Q ss_pred CcccCchhhcCCCCCCEEeccCCccccc-Cch-hhc--CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGP-IPP-DMC--KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+.+..+..+..+++|++|++++|.+... ++. .+. ..++|+.|++++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 6555555555555555555544432110 000 000 012233333333444444444444555555555555555443
Q ss_pred c-------------------------cccccCCCCCCEeecccCccc--cccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 394 V-------------------------PAGIWGLPEVNIIDIALNQIE--GPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 394 ~-------------------------~~~~~~~~~L~~L~ls~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
+ +..+..+++|+.|++++|.+. +.+|..+.++++|+.|++++|++++..|..+
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 3 334444444444444444443 3455666666777777777777776666666
Q ss_pred hcCCCCCEEeccCCcCcc
Q 012103 447 SKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 447 ~~l~~L~~L~l~~n~~sg 464 (471)
..+++|+.|++++|++++
T Consensus 501 ~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp TTCTTCCEEECCSSCCGG
T ss_pred ccccccCEEeCCCCCccc
Confidence 777777777777777764
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-46 Score=388.39 Aligned_cols=370 Identities=21% Similarity=0.289 Sum_probs=333.0
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcC-------------------------------------------
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVF------------------------------------------- 126 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l------------------------------------------- 126 (471)
.+++.|+++++.+.|.+|.+++++++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5789999999999999999999999999999999843
Q ss_pred -----------------------------------CccCC-CCCCCCCCCEEEccCCCCccc-----------------C
Q 012103 127 -----------------------------------SGSFP-EISSLNELQHLYLNLSGFSGV-----------------F 153 (471)
Q Consensus 127 -----------------------------------~~~~~-~l~~l~~L~~L~l~~n~l~~~-----------------~ 153 (471)
++ +| .+.++++|++|++++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 34 44 788999999999999999995 6
Q ss_pred Cccccc--CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-Ccc-cCCccccCC------CCCcEEEcccCcC
Q 012103 154 PWMSLG--NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-IDG-QIPVEIGNL------TELINLELSDNNI 223 (471)
Q Consensus 154 ~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l 223 (471)
| ..++ ++++|++|++++|.+ .+.+|..+..+++|++|++++|. +++ .+|..++.+ ++|++|++++|.+
T Consensus 240 p-~~l~~~~l~~L~~L~L~~n~l-~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 240 T-EDLKWDNLKDLTDVEVYNCPN-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp T-SCCCGGGCTTCCEEEEECCTT-CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred c-hhhhhcccCCCCEEEecCCcC-CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 7 7888 999999999999998 56789999999999999999998 998 899888776 9999999999999
Q ss_pred CCcCCc--cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCC-CCEEEccCCcCccccch
Q 012103 224 SGEIPS--EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTN-LVTLQLFKNQFSGEVPA 300 (471)
Q Consensus 224 ~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 300 (471)
+ .+|. .++++++|++|++++|.++|.+| .+..+++|++|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 9 8898 89999999999999999998999 899999999999999999955558888999 999999999999 7888
Q ss_pred hccCCC--CCCEEEcccCcCcccCchhhc-------CCCCCCEEeccCCcccccCchhh-cCCCCCceeeccCCcccccc
Q 012103 301 ELGKFK--KLVNLSLYTNKLTGALPQELG-------SWAEFDFIDVSENLLTGPIPPDM-CKRGTMRDLLMLQNKFTGEI 370 (471)
Q Consensus 301 ~l~~~~--~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~l~~n~~~~~~ 370 (471)
.+...+ +|++|++++|.+.+.+|..+. .+++|++|++++|.++ .+|..+ ..+++|+.|++++|+++ .+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 777654 899999999999998888887 7789999999999998 677654 45899999999999999 55
Q ss_pred chh-hhcC-------CCCcEEEccCCcCccccccccc--CCCCCCEeecccCccccccchhhhccCCCCeeeC------C
Q 012103 371 PAT-YANC-------LTLQRFRVSNNSLKGTVPAGIW--GLPEVNIIDIALNQIEGPITKDIENAKALNLLFA------E 434 (471)
Q Consensus 371 ~~~-~~~~-------~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l------~ 434 (471)
|.. +... ++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+.++++|+.|++ +
T Consensus 473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTT
T ss_pred CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccc
Confidence 554 3332 39999999999999 7888887 99999999999999998 8999999999999999 5
Q ss_pred CCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 435 YNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 435 ~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+|++.+.+|..+..+++|+.|++++|++ +.||..+
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~ 585 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI 585 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH
Confidence 6888999999999999999999999999 7999876
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-45 Score=377.38 Aligned_cols=392 Identities=18% Similarity=0.151 Sum_probs=336.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
-.+++.|+++++.+++ +++..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+ .+.++++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 4679999999999984 444559999999999999999998889999999999999999999998886 89999999999
Q ss_pred EccCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCcccc-------------------------------------
Q 012103 143 YLNLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVV------------------------------------- 184 (471)
Q Consensus 143 ~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~------------------------------------- 184 (471)
++++|.+.+ ..| ..++++++|++|++++|.+... .+..+.
T Consensus 134 ~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 134 NVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTI-TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp ECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEE-CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eCCCCcccceech-HhHhhcCCCCEEEccCCcceec-ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 999999986 457 7899999999999999987421 122111
Q ss_pred -----------------------------------------------------------------------CCCCCCEEE
Q 012103 185 -----------------------------------------------------------------------KLNKLNWLY 193 (471)
Q Consensus 185 -----------------------------------------------------------------------~l~~L~~L~ 193 (471)
.+++|+.|+
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence 123333333
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+. .+| .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 292 l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred ecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 3333333 233 566777899999999999 5788 45 8999999999999665444 56789999999999999987
Q ss_pred cc--c-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchh
Q 012103 274 DL--S-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 274 ~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.. + .+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred CcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 63 3 77889999999999999984 66888999999999999999998777 67889999999999999999889999
Q ss_pred hcCCCCCceeeccCCcccc-ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCC
Q 012103 350 MCKRGTMRDLLMLQNKFTG-EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKAL 428 (471)
Q Consensus 350 ~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L 428 (471)
+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+.++++|
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 9999999999999999998 478899999999999999999998889999999999999999999999999999999999
Q ss_pred CeeeCCCCcCcccchhhhhcCC-CCCEEeccCCcCcccCC
Q 012103 429 NLLFAEYNRLSGELPEEISKAT-SLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 429 ~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~~sg~ip 467 (471)
+.|++++|+++ .+|..+..++ +|+.|++++|++.+..|
T Consensus 524 ~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 524 STLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999 7888899997 59999999999997554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-45 Score=376.16 Aligned_cols=402 Identities=20% Similarity=0.199 Sum_probs=279.4
Q ss_pred CceeeceEeCCC-----------CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEe
Q 012103 52 FCNFTGITCNSD-----------SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLD 120 (471)
Q Consensus 52 ~c~~~gv~c~~~-----------~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 120 (471)
.|.|.|+ |+.. ...+++|+++++.+++..+ ..+.++++|++|++++|.+++..|.+|.++++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4788887 6531 2479999999999985444 4599999999999999999988888999999999999
Q ss_pred CCCCcCCccCC-CCCCCCCCCEEEccCCCCccc-CCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc
Q 012103 121 LGNNVFSGSFP-EISSLNELQHLYLNLSGFSGV-FPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS 198 (471)
Q Consensus 121 l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 198 (471)
+++|.+++.++ .+.++++|++|++++|.+++. .+ ..+.++++|++|++++|.+.....+..+..+++|++|++++|.
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS-CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchh-hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 99999998887 589999999999999999864 34 6789999999999999984232223578889999999999999
Q ss_pred CcccCCccccCCCCCcEEEcccCcCCCcCCcc-ccCCCCCCeEeeccccccccC--C-----------------------
Q 012103 199 IDGQIPVEIGNLTELINLELSDNNISGEIPSE-IGNLVKLWRLELYNNQLSGKL--P----------------------- 252 (471)
Q Consensus 199 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--~----------------------- 252 (471)
+.+..|..+..+++|+.|++++|.+. .+|.. +..+++|++|++++|.+++.. +
T Consensus 160 l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 160 LRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHH
T ss_pred ccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchh
Confidence 99888888888777777777777665 33332 244666777777766665421 0
Q ss_pred ------ccccCCCCCCEE-----------------------------------------------------------eCC
Q 012103 253 ------VGLRNLTNLANF-----------------------------------------------------------DAS 267 (471)
Q Consensus 253 ------~~l~~l~~L~~L-----------------------------------------------------------~l~ 267 (471)
..+..+++|+.+ +++
T Consensus 239 ~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~ 318 (549)
T 2z81_A 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318 (549)
T ss_dssp HHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEec
Confidence 001122223333 333
Q ss_pred CCcCccccccC-CCCCCCCEEEccCCcCccccch---hccCCCCCCEEEcccCcCcccCc--hhhcCCCCCCEEeccCCc
Q 012103 268 TNFLEGDLSEV-RFLTNLVTLQLFKNQFSGEVPA---ELGKFKKLVNLSLYTNKLTGALP--QELGSWAEFDFIDVSENL 341 (471)
Q Consensus 268 ~n~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~L~~n~ 341 (471)
+|.+...+..+ ..+++|++|++++|.+++.+|. .++.+++|++|++++|.+++..+ ..+..+++|++|++++|+
T Consensus 319 ~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred cCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 33332111111 2355556666666655554432 24455556666666665553221 234555566666666666
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD 421 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~ 421 (471)
++ .+|..+..+++|+.|++++|+++ .++..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|.
T Consensus 399 l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 399 FH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp CC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred Cc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 55 45555555566666666666555 222222 245666666666666432 46788999999999998 5665
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCC
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
...+++|+.|++++|++++..|+.+..+++|+.|++++|++++..|
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4678999999999999998888889999999999999999998776
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-43 Score=370.80 Aligned_cols=400 Identities=20% Similarity=0.223 Sum_probs=204.1
Q ss_pred CEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEc
Q 012103 66 FVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYL 144 (471)
Q Consensus 66 ~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l 144 (471)
+++.|+++++.+.+..| ..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++.++ .+.++++|++|++
T Consensus 50 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccCH-HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 45555555555553323 235555555555555555554333345555555555555555555444 4555555555555
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccc--cCCCC----------------------------------
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQV--VKLNK---------------------------------- 188 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l--~~l~~---------------------------------- 188 (471)
++|.+++..+ ..+.++++|++|++++|.++. ..+..+ ..+++
T Consensus 129 s~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHNGLSSTKL-GTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSSCCSCCCC-CSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCcccccCc-hhhcccccCCEEEccCCcccc-cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 5555555444 444555555555555554421 111111 12233
Q ss_pred -----------------CCEEEcccccCcccCCccccCCC--CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 189 -----------------LNWLYLTNCSIDGQIPVEIGNLT--ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 189 -----------------L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+..|..+..+++|++|++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 33333344444333333443332 25666666665555555555556666666666665554
Q ss_pred cCCccccCCCCCCEEeCCCCcCccc-----cc-----cCCCCCCCCEEEccCCcCccccchhccCCCCCCE---------
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGD-----LS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVN--------- 310 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~-----~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~--------- 310 (471)
..+..+.++++|+++++++|...+. ++ .+..+++|++|++++|.+++..+..+..+++|++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 4444444444444444433322110 00 2233344444444444444333333333333333
Q ss_pred -------------------EEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc-hhhcCCCCCceeeccCCcccc--
Q 012103 311 -------------------LSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP-PDMCKRGTMRDLLMLQNKFTG-- 368 (471)
Q Consensus 311 -------------------L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~l~~n~~~~-- 368 (471)
|++++|.+.+..|..+..+++|+.|++++|.+++.+| ..+..+++|+.|++++|++.+
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 3333333443344445555555555555555554443 344445555555555554443
Q ss_pred ------------------------ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc-----
Q 012103 369 ------------------------EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT----- 419 (471)
Q Consensus 369 ------------------------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~----- 419 (471)
.+|..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 445556666667777777777765555556667777777777777665321
Q ss_pred ---hhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 420 ---KDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 420 ---~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
..+.++++|+.|++++|+++...++.+..+++|+.|++++|+++ .+|..
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 578 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPAS 578 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHh
Confidence 12566777777777777777333345777778888888888887 45543
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-44 Score=380.71 Aligned_cols=371 Identities=19% Similarity=0.272 Sum_probs=323.7
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeC-CCCcCCcc---------------------------------------
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDL-GNNVFSGS--------------------------------------- 129 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------- 129 (471)
.+++.|+|+++.+.|.+|.+++++++|++|+| ++|.++|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 77754433
Q ss_pred -------------------------------------CC-CCCCCCCCCEEEccCCCCcc-----------------cCC
Q 012103 130 -------------------------------------FP-EISSLNELQHLYLNLSGFSG-----------------VFP 154 (471)
Q Consensus 130 -------------------------------------~~-~l~~l~~L~~L~l~~n~l~~-----------------~~~ 154 (471)
+| .+.++++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 44 67889999999999999998 366
Q ss_pred ccccc--CCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-Ccc-cCCccccCCC-------CCcEEEcccCcC
Q 012103 155 WMSLG--NMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-IDG-QIPVEIGNLT-------ELINLELSDNNI 223 (471)
Q Consensus 155 ~~~~~--~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l 223 (471)
..++ ++++|++|++++|.+ ...+|..+..+++|++|++++|. +++ .+|..+..++ +|+.|++++|.+
T Consensus 483 -~~l~f~~L~~L~~L~Ls~N~l-~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 483 -EELSWSNLKDLTDVELYNCPN-MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp -SCCCGGGCTTCCEEEEESCTT-CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred -hhhhhccCCCCCEEECcCCCC-CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 6666 999999999999998 56789999999999999999998 888 7887666554 999999999999
Q ss_pred CCcCCc--cccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCC-CCEEEccCCcCccccch
Q 012103 224 SGEIPS--EIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTN-LVTLQLFKNQFSGEVPA 300 (471)
Q Consensus 224 ~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 300 (471)
. .+|. .+.++++|++|++++|.++ .+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCch
Confidence 9 8888 8999999999999999998 788 889999999999999999944447888888 999999999999 7787
Q ss_pred hccCCC--CCCEEEcccCcCcccCchh---hc--CCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCccccccch
Q 012103 301 ELGKFK--KLVNLSLYTNKLTGALPQE---LG--SWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 301 ~l~~~~--~L~~L~L~~n~l~~~~~~~---~~--~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~~~~~ 372 (471)
.+...+ +|+.|++++|.+.+.+|.. +. ..++|+.|++++|.++ .+|..+. .+++|+.|++++|++. .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 777665 4999999999998876632 22 3458999999999998 7777665 7899999999999999 6665
Q ss_pred hhhc--------CCCCcEEEccCCcCccccccccc--CCCCCCEeecccCccccccchhhhccCCCCeeeCCC------C
Q 012103 373 TYAN--------CLTLQRFRVSNNSLKGTVPAGIW--GLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEY------N 436 (471)
Q Consensus 373 ~~~~--------~~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~------n 436 (471)
.+.. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+.++++|+.|++++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 4433 338999999999999 8888887 99999999999999998 788999999999999976 8
Q ss_pred cCcccchhhhhcCCCCCEEeccCCcCcccCCCCCC
Q 012103 437 RLSGELPEEISKATSLVVIKLNNNQLTGKIPASIY 471 (471)
Q Consensus 437 ~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~~ 471 (471)
++.+.+|..+..+++|+.|+|++|++ +.||..+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 88999999999999999999999999 79998763
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.3e-44 Score=360.95 Aligned_cols=387 Identities=20% Similarity=0.217 Sum_probs=263.9
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+. .+++..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++.+.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 56777777777776 34434477777777777777777766677777777777777777777754334 6777777777
Q ss_pred cCCCCcc-cCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC--CEEEcccccC--cccCCccccC----------
Q 012103 145 NLSGFSG-VFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL--NWLYLTNCSI--DGQIPVEIGN---------- 209 (471)
Q Consensus 145 ~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~---------- 209 (471)
++|.+++ ..| ..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 98 ~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred cCCccccccch-hhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 7777766 345 567777777777777777632 345555666 7777777776 4455544443
Q ss_pred ----------------CCCCcEEEcccCc-------CCCcCCccccCCCCCCeEeeccccccccCCccc---cCCCCCCE
Q 012103 210 ----------------LTELINLELSDNN-------ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGL---RNLTNLAN 263 (471)
Q Consensus 210 ----------------l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~ 263 (471)
+++|+.+++++|. +.+.+| .+..+++|++|++++|.+.+..+..+ ...++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 3334444444433 222222 23333333333333333322111100 01234555
Q ss_pred EeCCCCcCccccc-cC-----CCCC--------------------------CCCEEEccCCcCccccchhccCCCCCCEE
Q 012103 264 FDASTNFLEGDLS-EV-----RFLT--------------------------NLVTLQLFKNQFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 264 L~l~~n~~~~~~~-~~-----~~~~--------------------------~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 311 (471)
|++++|.+.+..+ .+ ..++ +|+.|++++|.+.+.. ....+++|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 5555555444333 22 3333 4566666666554221 12577899999
Q ss_pred EcccCcCcccCchhhcCCCCCCEEeccCCcccc--cCchhhcCCCCCceeeccCCccccccch-hhhcCCCCcEEEccCC
Q 012103 312 SLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--PIPPDMCKRGTMRDLLMLQNKFTGEIPA-TYANCLTLQRFRVSNN 388 (471)
Q Consensus 312 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n 388 (471)
++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 999999998888888999999999999999986 5667788999999999999999975665 4778899999999999
Q ss_pred cCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh-hhcCCCCCEEeccCCcCcccC
Q 012103 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE-ISKATSLVVIKLNNNQLTGKI 466 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~~sg~i 466 (471)
++++.+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|++++..
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccC
Confidence 99888877664 78999999999998 67877789999999999999999 56665 888999999999999998754
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-43 Score=358.97 Aligned_cols=393 Identities=19% Similarity=0.187 Sum_probs=323.7
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + .+++++|++++|.+++..+.+|.++++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~-l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCS-SCCSS-S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCcc-ccCCC-c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 3566666666 66653 2 3579999999999998888899999999999999999999877 7999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCc
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
.+++..+ ..+.++++|++|++++|.+.... +..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++.
T Consensus 87 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 87 PIQSLAL-GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCEECT-TTTTTCTTCCEEECTTSCCCCST-TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCCccCH-hhhcCccccccccccccccccCC-CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 9998887 88999999999999999984322 3358899999999999999986 5799999999999999999999987
Q ss_pred CCccccCCCCC----CeEeeccccccccCC--------------------------------------------------
Q 012103 227 IPSEIGNLVKL----WRLELYNNQLSGKLP-------------------------------------------------- 252 (471)
Q Consensus 227 ~p~~~~~l~~L----~~L~l~~n~l~~~~~-------------------------------------------------- 252 (471)
.+..++.+.+| +++++++|.+.+..+
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 77778777777 777777776554332
Q ss_pred -------------------------------ccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchh
Q 012103 253 -------------------------------VGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAE 301 (471)
Q Consensus 253 -------------------------------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 301 (471)
..+..+++|+++++++|.+.+....+..+ +|++|++++|.+. .+|..
T Consensus 245 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~ 322 (570)
T 2z63_A 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTL 322 (570)
T ss_dssp ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBC
T ss_pred hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcc
Confidence 33445677888888888777544455555 7777777777666 33321
Q ss_pred c--------------------cCCCCCCEEEcccCcCcccC--chhhcCCCCCCEEeccCCcccccCchhhcCCCCCcee
Q 012103 302 L--------------------GKFKKLVNLSLYTNKLTGAL--PQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359 (471)
Q Consensus 302 l--------------------~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 359 (471)
. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++ +|..+..+++|+.|
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L 401 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred cccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEE
Confidence 0 45677888888888877543 6677788889999999888874 44448888999999
Q ss_pred eccCCccccccc-hhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc-cccchhhhccCCCCeeeCCCCc
Q 012103 360 LMLQNKFTGEIP-ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE-GPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 360 ~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|+
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 999999887655 56888999999999999999888889999999999999999998 5788899999999999999999
Q ss_pred CcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 438 LSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 438 l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+++..|..+..+++|+.|++++|++++..|..|
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 998889999999999999999999997766654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.1e-43 Score=356.15 Aligned_cols=394 Identities=20% Similarity=0.260 Sum_probs=276.7
Q ss_pred eEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCC
Q 012103 58 ITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSL 136 (471)
Q Consensus 58 v~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l 136 (471)
..|.. ..+ .+.++++++ .+|.. + .++|++|++++|.+++..|..|.++++|++|++++|.+++.++ .+.++
T Consensus 2 ~~C~~--~~~--c~~~~~~l~-~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 2 LSCDA--SGV--CDGRSRSFT-SIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73 (549)
T ss_dssp CEECT--TSE--EECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccCCC--Cce--EECCCCccc-ccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence 35764 333 789999998 78865 3 3799999999999998888999999999999999999999887 89999
Q ss_pred CCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC-ccccCCCCCcE
Q 012103 137 NELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP-VEIGNLTELIN 215 (471)
Q Consensus 137 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~ 215 (471)
++|++|++++|.+++..+ ..++++++|++|++++|.+.....|..+..+++|++|++++|.+.+.+| ..+..+++|++
T Consensus 74 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 74 GSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp TTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred ccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 999999999999998877 7799999999999999999655677889999999999999998544454 68999999999
Q ss_pred EEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc----ccCCCCCCCCEEEccC
Q 012103 216 LELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL----SEVRFLTNLVTLQLFK 291 (471)
Q Consensus 216 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~----~~~~~~~~L~~L~l~~ 291 (471)
|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+.. +....+++|+.|++++
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 232 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEES
T ss_pred eeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccc
Confidence 999999999989999999999999999999886333333467899999999999987632 1222334444444444
Q ss_pred CcCcc---------------------------------------------------------------------------
Q 012103 292 NQFSG--------------------------------------------------------------------------- 296 (471)
Q Consensus 292 n~l~~--------------------------------------------------------------------------- 296 (471)
|.+++
T Consensus 233 n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L 312 (549)
T 2z81_A 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312 (549)
T ss_dssp CEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTC
T ss_pred cccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccc
Confidence 43322
Q ss_pred -----------ccchhc-cCCCCCCEEEcccCcCcccCch---hhcCCCCCCEEeccCCcccccCc--hhhcCCCCCcee
Q 012103 297 -----------EVPAEL-GKFKKLVNLSLYTNKLTGALPQ---ELGSWAEFDFIDVSENLLTGPIP--PDMCKRGTMRDL 359 (471)
Q Consensus 297 -----------~~~~~l-~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~p--~~~~~~~~L~~L 359 (471)
.+|..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 313 ~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp CEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEE
T ss_pred eEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEE
Confidence 122222 2344444444444444443321 13344444444444444432111 223444444444
Q ss_pred eccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 360 LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 360 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ .++++|+.|++++|+++
T Consensus 393 ~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp ECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 44444444 34444444444444444444444 222222 134555555555555432 46889999999999998
Q ss_pred ccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 440 GELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 440 ~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
.+|. ...+++|++|++++|++++.+|..|
T Consensus 465 -~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 465 -TLPD-ASLFPVLLVMKISRNQLKSVPDGIF 493 (549)
T ss_dssp -SCCC-GGGCTTCCEEECCSSCCCCCCTTGG
T ss_pred -cCCC-cccCccCCEEecCCCccCCcCHHHH
Confidence 7776 5678999999999999998777644
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=371.56 Aligned_cols=395 Identities=21% Similarity=0.192 Sum_probs=335.8
Q ss_pred EEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccC-C-CCCCCCCCCEEEcc
Q 012103 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSF-P-EISSLNELQHLYLN 145 (471)
Q Consensus 68 ~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~l~~l~~L~~L~l~ 145 (471)
+.++.++++++ .+|. ..+++++|++++|.+++..|..|.++++|++|++++|...+.+ + .+.++++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45677888888 6674 4579999999999999888999999999999999999766655 4 89999999999999
Q ss_pred CCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEcccccCcccCC-ccccCCCCCcEEEcccCc
Q 012103 146 LSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCSIDGQIP-VEIGNLTELINLELSDNN 222 (471)
Q Consensus 146 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~ 222 (471)
+|.+.+..| ..+.++++|++|++++|.+.. ..+. .+..+++|++|++++|.+.+..+ ..++++++|++|++++|.
T Consensus 82 ~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 82 SSKIYFLHP-DAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TCCCCEECT-TSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCcCcccCH-hHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 999999888 899999999999999999943 3344 48899999999999999987654 679999999999999999
Q ss_pred CCCcCCccccCC--CCCCeEeeccccccccCCccccCCCC------CCEEeCCCCcCccccc-c----------------
Q 012103 223 ISGEIPSEIGNL--VKLWRLELYNNQLSGKLPVGLRNLTN------LANFDASTNFLEGDLS-E---------------- 277 (471)
Q Consensus 223 l~~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~-~---------------- 277 (471)
+++..+..+..+ ++|++|++++|.+.+..+..+..+++ |+.|++++|.+.+..+ .
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 998888888877 89999999999999888877766665 9999999997654332 1
Q ss_pred --------------------CCC--CCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEE
Q 012103 278 --------------------VRF--LTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFI 335 (471)
Q Consensus 278 --------------------~~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 335 (471)
+.. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 111 3689999999999998888899999999999999999998888889999999999
Q ss_pred eccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc------------------ccc-
Q 012103 336 DVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT------------------VPA- 396 (471)
Q Consensus 336 ~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~------------------~~~- 396 (471)
++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++. +|.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc
Confidence 9999999988888999999999999999999988788899999999999999988732 110
Q ss_pred ---------------------cccCCCCCCEeecccCccccc------------------------------cchhhhcc
Q 012103 397 ---------------------GIWGLPEVNIIDIALNQIEGP------------------------------ITKDIENA 425 (471)
Q Consensus 397 ---------------------~~~~~~~L~~L~ls~n~~~~~------------------------------~~~~~~~l 425 (471)
.+..+++|++|++++|++++. .+..+.++
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 123567778888887777632 22346677
Q ss_pred CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 426 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
++|+.|++++|++++..|..+..+++|+.|+|++|++++-.|..
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 523 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence 88999999999999888888999999999999999999644443
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-42 Score=344.79 Aligned_cols=378 Identities=17% Similarity=0.154 Sum_probs=263.7
Q ss_pred EEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC--CCCCCCCCCEEEccCC
Q 012103 70 IELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP--EISSLNELQHLYLNLS 147 (471)
Q Consensus 70 L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n 147 (471)
++.++.+++ .+|. -.++|++|++++|.+++..|..|.++++|++|++++|.+.+.++ .+.++++|++|++++|
T Consensus 15 ~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 333445555 5664 23789999999999998888999999999999999999976543 6889999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEcccccCcccCCcc-ccCCCCCcEEEcccCcCC
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCSIDGQIPVE-IGNLTELINLELSDNNIS 224 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~ 224 (471)
.+++..| ..+.++++|++|++++|.+. ...+. .+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 90 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLET-GAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECT-TTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccCh-hhccCcccCCEEeCCCCCCC-ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9988877 78888999999999998873 22233 3777888888888888888766665 778888888888888888
Q ss_pred CcCCccccCC--CCCCeEeeccccccccCCccc--------cCCCCCCEEeCCCCcCccccc-cC---CCCCCCCEEEcc
Q 012103 225 GEIPSEIGNL--VKLWRLELYNNQLSGKLPVGL--------RNLTNLANFDASTNFLEGDLS-EV---RFLTNLVTLQLF 290 (471)
Q Consensus 225 ~~~p~~~~~l--~~L~~L~l~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~~~~~~~-~~---~~~~~L~~L~l~ 290 (471)
+..+..+..+ .+++.+++++|.+.+..+..+ ..+++|++|++++|.+.+..+ .+ ...++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777766655 577777777777764333221 233455555555555544332 11 112445555555
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhc--CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG--SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
+|...+.... .+.+.+..+..+. ..++|+.|++++|.+++..|..+..+++|+.|++++|++.+
T Consensus 248 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 248 NSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 5543321100 0011111111111 23567777777777777777777777777777777777777
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhc
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK 448 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 448 (471)
..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|++|++++|++++..+..+..
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence 66777777777777777777777666777777777788888887777777777777777888888888777655556677
Q ss_pred CCCCCEEeccCCcCcccCCC
Q 012103 449 ATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 449 l~~L~~L~l~~n~~sg~ip~ 468 (471)
+++|+.|++++|++++.+|.
T Consensus 394 l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred CCcccEEEccCCCcccCCCc
Confidence 77788888888888777763
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-42 Score=350.17 Aligned_cols=382 Identities=21% Similarity=0.186 Sum_probs=246.0
Q ss_pred EEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccC
Q 012103 68 QEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNL 146 (471)
Q Consensus 68 ~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~ 146 (471)
+.+++++++++ .+|.. + .++|++|++++|.+++..+..|.++++|++|++++|.+++..+ .+.++++|++|++++
T Consensus 34 ~~l~ls~~~L~-~ip~~-~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKD-L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC-SCCTT-S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc-cCCCC-C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 45555555555 34432 2 1455555555555555545555555555555555555555544 455555555555555
Q ss_pred CCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCC--cEEEcccCcC-
Q 012103 147 SGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTEL--INLELSDNNI- 223 (471)
Q Consensus 147 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l- 223 (471)
|.++.... . .+++|++|++++|.+.....|..+..+++|++|++++|.+.+. .+..+++| +.|++++|.+
T Consensus 110 N~l~~lp~-~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 110 NRLQNISC-C---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp SCCCEECS-C---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CcCCccCc-c---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 55553322 1 4555555555555554334445555555555555555555432 22223333 5555555555
Q ss_pred -CCcCCccccC--------------------------CCCCCeEeecccc----------------------------cc
Q 012103 224 -SGEIPSEIGN--------------------------LVKLWRLELYNNQ----------------------------LS 248 (471)
Q Consensus 224 -~~~~p~~~~~--------------------------l~~L~~L~l~~n~----------------------------l~ 248 (471)
.+..|..+.. +++|+.+++++|. +.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 3333333332 2233333333331 11
Q ss_pred cc----CCccccCCCCCCEEeCCCCcCccccc-cC-----CC--------------------------CCCCCEEEccCC
Q 012103 249 GK----LPVGLRNLTNLANFDASTNFLEGDLS-EV-----RF--------------------------LTNLVTLQLFKN 292 (471)
Q Consensus 249 ~~----~~~~l~~l~~L~~L~l~~n~~~~~~~-~~-----~~--------------------------~~~L~~L~l~~n 292 (471)
+. ++.. ...++|++|++++|.+.+.++ .+ .. ..+|++|++++|
T Consensus 263 ~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 263 WKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 00 0000 011245555555555554333 21 11 145777777777
Q ss_pred cCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc--cCchhhcCCCCCceeeccCCcccccc
Q 012103 293 QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG--PIPPDMCKRGTMRDLLMLQNKFTGEI 370 (471)
Q Consensus 293 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~l~~n~~~~~~ 370 (471)
.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+
T Consensus 342 ~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 342 PFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred Cccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 775321 12678899999999999998888889999999999999999985 44567888999999999999999855
Q ss_pred ch-hhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh-hhc
Q 012103 371 PA-TYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE-ISK 448 (471)
Q Consensus 371 ~~-~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-l~~ 448 (471)
|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+.++++|+.|++++|+++ .+|.. +..
T Consensus 420 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~ 495 (562)
T 3a79_B 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR 495 (562)
T ss_dssp SSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT
T ss_pred ChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc
Confidence 54 578899999999999999988777654 78999999999998 67777779999999999999999 67766 899
Q ss_pred CCCCCEEeccCCcCcccCC
Q 012103 449 ATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 449 l~~L~~L~l~~n~~sg~ip 467 (471)
+++|+.|++++|++++..|
T Consensus 496 l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEEecCCCcCCCcc
Confidence 9999999999999997654
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-41 Score=339.38 Aligned_cols=377 Identities=16% Similarity=0.166 Sum_probs=271.3
Q ss_pred Cceeec--eEeCCC--------CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccc-cccccCCCCCCEEe
Q 012103 52 FCNFTG--ITCNSD--------SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEI-SKDLNNCVKLQYLD 120 (471)
Q Consensus 52 ~c~~~g--v~c~~~--------~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 120 (471)
.|.|.+ +.|... ..++++|+|+++.+++..+ ..+.++++|++|++++|.+.+.+ +..|.++++|++|+
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCCh-hHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 455554 777642 2679999999999995445 45999999999999999998665 56799999999999
Q ss_pred CCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCC-cccccCCCCCcEEEccCCCCCCCCCCcc-ccCCCCCCEEEcccc
Q 012103 121 LGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFP-WMSLGNMTNLVSLSVGDNPFDPTPFPDQ-VVKLNKLNWLYLTNC 197 (471)
Q Consensus 121 l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n 197 (471)
+++|.+++..+ .+.++++|++|++++|.+++..+ ...+..+++|++|++++|.+.. ..|.. +..+++|++|++++|
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-IQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-CCCCGGGGGCTTCCEEECTTC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-cCcccccCCCCcccEEeCCCC
Confidence 99999999877 89999999999999999987544 1348999999999999999943 33554 889999999999999
Q ss_pred cCcccCCccccCC--CCCcEEEcccCcCCCcCCcc--------ccCCCCCCeEeeccccccccCCccccCC---CCCCEE
Q 012103 198 SIDGQIPVEIGNL--TELINLELSDNNISGEIPSE--------IGNLVKLWRLELYNNQLSGKLPVGLRNL---TNLANF 264 (471)
Q Consensus 198 ~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L 264 (471)
.+.+..+..+..+ .+|+.+++++|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.+
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 9998888888766 68999999999998654433 3356889999999999998777766543 899999
Q ss_pred eCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc--CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcc
Q 012103 265 DASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG--KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLL 342 (471)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 342 (471)
++++|...+....... +.+..+..+. ..++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 245 ~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTN-------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp ECTTCTTTSCCTTCCS-------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred eeccccccccccchhh-------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 9999876543221111 1111111111 124566666666666655555566666666666666666
Q ss_pred cccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhh
Q 012103 343 TGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDI 422 (471)
Q Consensus 343 ~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 422 (471)
++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 65555556666666666666666665555566666666666666666665556666666666666666666665555555
Q ss_pred hccCCCCeeeCCCCcCcccch
Q 012103 423 ENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 423 ~~l~~L~~L~l~~n~l~~~~p 443 (471)
..+++|+.|++++|++++..|
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTT
T ss_pred ccCCcccEEEccCCCcccCCC
Confidence 666666666666666665555
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.2e-41 Score=347.66 Aligned_cols=397 Identities=17% Similarity=0.170 Sum_probs=288.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHL 142 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L 142 (471)
+..+++|||++|.++ .+++.+|.++++|++|++++|.+++..+.+|.++++|++|+|++|++++.++ .+.++++|++|
T Consensus 51 p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 357899999999999 6777679999999999999999998878899999999999999999999887 78999999999
Q ss_pred EccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCC----CcEEEc
Q 012103 143 YLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTE----LINLEL 218 (471)
Q Consensus 143 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----L~~L~L 218 (471)
++++|.+++..+ ..|+++++|++|++++|.+.....|..+..+++|++|++++|.+++..+..+..+.+ ...+++
T Consensus 130 ~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 130 VAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999999998877 789999999999999999977778899999999999999999998777666644332 234555
Q ss_pred ccCcCCCcCCccc------------------------cCC----------------------------------------
Q 012103 219 SDNNISGEIPSEI------------------------GNL---------------------------------------- 234 (471)
Q Consensus 219 ~~n~l~~~~p~~~------------------------~~l---------------------------------------- 234 (471)
+.|.+....+..+ ..+
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 5554432111110 001
Q ss_pred -----------------CCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcccc--------------------cc
Q 012103 235 -----------------VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDL--------------------SE 277 (471)
Q Consensus 235 -----------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~--------------------~~ 277 (471)
..++.+.+..+.+... ..+.....++.+++.+|.+.... ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 1111111111111100 01222334444444444332211 11
Q ss_pred CCCCCCCCEEEccCCcCcc--ccc-----------------------hhccCCCCCCEEEcccCcCcccCc-hhhcCCCC
Q 012103 278 VRFLTNLVTLQLFKNQFSG--EVP-----------------------AELGKFKKLVNLSLYTNKLTGALP-QELGSWAE 331 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~--~~~-----------------------~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~ 331 (471)
...+++|+.+++++|.+.. ..+ ..+..+++|+.+++..+......+ ..+..+.+
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccc
Confidence 2235666777776666542 122 233445566666666655543333 34566777
Q ss_pred CCEEeccCCcccccCchhhcCCCCCceeeccCCccc-cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 332 FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT-GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 332 L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
++.++++.|.+.+..|..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 888888888887777777778888888888888644 4567778888888888888888887778888888888888888
Q ss_pred cCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC-CCCCEEeccCCcCcc
Q 012103 411 LNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA-TSLVVIKLNNNQLTG 464 (471)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l~~n~~sg 464 (471)
+|++++..|..+.++++|+.|++++|++++..|+.+..+ ++|++|+|++|+++.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888888888888888888888888888888888887 578888888888874
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-42 Score=325.72 Aligned_cols=292 Identities=29% Similarity=0.478 Sum_probs=207.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCce--eeceEeCCCC--CCEEEEEcCCCCCcc--ccCcccccCCCCC
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSWVSNNHFCN--FTGITCNSDS--SFVQEIELSNRNLKG--TLPFDSICQLQAL 92 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~gv~c~~~~--~~v~~L~L~~~~l~g--~l~~~~~~~l~~L 92 (471)
.|.++|++||++||+++.+|. .+++|..+.+||. |.||.|+... ++|++|+++++.+.| .+|.. +..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-GGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh-HhCCCCC
Confidence 578999999999999997763 6899998889998 9999998643 789999999999998 77765 8888888
Q ss_pred cEEeCCC-CCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEcc
Q 012103 93 HKLSLGF-NSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVG 170 (471)
Q Consensus 93 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 170 (471)
++|++++ |.+.+.+|..+.++++|++|++++|.+++..| .+.++++|++|++++|.+++..
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----------------- 141 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL----------------- 141 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-----------------
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-----------------
Confidence 8888884 88888888888888888888888887776555 4555555555555555555433
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCC-CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLT-ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+.+.+|..+..+. |++|++++|.+++
T Consensus 142 ---------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 142 ---------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp ---------CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred ---------ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 44455555566666666666666666666666 677777777777666666666665 7777777777766
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
..+..+..+++|++|++++|.+++.++.+..+++|++|++++|.+++.+|..+..+++|++|++++|.++|.+|.. ..+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 6666666667777777777666655555555566666666666666666666666666666666666666555553 455
Q ss_pred CCCCEEeccCCc
Q 012103 330 AEFDFIDVSENL 341 (471)
Q Consensus 330 ~~L~~L~L~~n~ 341 (471)
++|+.+++++|.
T Consensus 291 ~~L~~l~l~~N~ 302 (313)
T 1ogq_A 291 QRFDVSAYANNK 302 (313)
T ss_dssp GGSCGGGTCSSS
T ss_pred cccChHHhcCCC
Confidence 555556665554
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=342.17 Aligned_cols=365 Identities=17% Similarity=0.186 Sum_probs=285.0
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCcc-CC-CCCCCCCCCE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS-FP-EISSLNELQH 141 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~l~~l~~L~~ 141 (471)
-.+++.|++++|.+++..|. .+.++++|++|++++|.++ .+|.. .+++|++|++++|.+++. .| .+.++++|++
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred cccccEEecCCCccCCcChH-HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 46799999999999955454 4999999999999999998 56766 899999999999999984 45 8999999999
Q ss_pred EEccCCCCcccCCcccccCCCCC--cEEEccCCCCC-CCCCCcccc--------------------------CCCCCCEE
Q 012103 142 LYLNLSGFSGVFPWMSLGNMTNL--VSLSVGDNPFD-PTPFPDQVV--------------------------KLNKLNWL 192 (471)
Q Consensus 142 L~l~~n~l~~~~~~~~~~~l~~L--~~L~l~~n~~~-~~~~~~~l~--------------------------~l~~L~~L 192 (471)
|++++|.+++ ..+..+++| +.|++++|.+. ....|..+. .+++|+.+
T Consensus 120 L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 120 LGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 9999999986 356777777 99999999871 112233332 35566666
Q ss_pred Eccccc-------CcccCCccccCCC---------------------------CCcEEEcccCcCCCcCCccc-----cC
Q 012103 193 YLTNCS-------IDGQIPVEIGNLT---------------------------ELINLELSDNNISGEIPSEI-----GN 233 (471)
Q Consensus 193 ~l~~n~-------l~~~~~~~l~~l~---------------------------~L~~L~L~~n~l~~~~p~~~-----~~ 233 (471)
++++|. +.+.+| .+..++ +|++|++++|.+.|.+|..+ .+
T Consensus 196 ~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~ 274 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274 (520)
T ss_dssp CEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCC
T ss_pred cccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccccc
Confidence 666654 333332 344444 45555555555555555555 55
Q ss_pred CCCCCeEeeccccccccCC-ccccCC---CCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCC
Q 012103 234 LVKLWRLELYNNQLSGKLP-VGLRNL---TNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLV 309 (471)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 309 (471)
++.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 55666666665555 233 223222 45777777777665322 236789999999999999988999999999999
Q ss_pred EEEcccCcCcc--cCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 310 NLSLYTNKLTG--ALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 310 ~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++++..|..+. ++|+.|+++
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 99999999996 56678899999999999999999768765 67789999999999999988877664 799999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
+|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999 888888899999999999999995433348899999999999999987654
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=333.26 Aligned_cols=366 Identities=18% Similarity=0.201 Sum_probs=292.3
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
...+++|++++|.+. .+++..+.++++|++|++++|.+++..|..|.++++|++|++++|.++..+.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 468999999999998 56655699999999999999999988899999999999999999999965545 899999999
Q ss_pred ccCCCCcccC-CcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC--CEEEcccccC--cccCCccccCC--------
Q 012103 144 LNLSGFSGVF-PWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL--NWLYLTNCSI--DGQIPVEIGNL-------- 210 (471)
Q Consensus 144 l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~l-------- 210 (471)
+++|.+++.. | ..++++++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 128 Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 128 LSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp CCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred CCCCCccccCch-HhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 9999999843 5 7899999999999999998542 33444555 9999999988 66666555443
Q ss_pred ------------------CCCcEEEcccCc----------------------------CCCc----CCccccCCCCCCeE
Q 012103 211 ------------------TELINLELSDNN----------------------------ISGE----IPSEIGNLVKLWRL 240 (471)
Q Consensus 211 ------------------~~L~~L~L~~n~----------------------------l~~~----~p~~~~~l~~L~~L 240 (471)
++|+.+++++|. +.+. ++.. ....+|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 344444444442 1000 0000 112366677
Q ss_pred eeccccccccCCccc-----cCC--------------------------CCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 241 ELYNNQLSGKLPVGL-----RNL--------------------------TNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 241 ~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
++++|.+++.+|..+ .++ .+|++|++++|.+.... ....+++|++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l 360 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEEC
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEEC
Confidence 777776666555544 222 45778888887765322 2367899999999
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcc--cCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCcc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTG--ALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKF 366 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~ 366 (471)
++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++|+.|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 9999998899999999999999999999986 34567889999999999999999767764 67789999999999999
Q ss_pred ccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchh-hhccCCCCeeeCCCCcCcccch
Q 012103 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKD-IENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~p 443 (471)
++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|+.|++++|++.+..+
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 987776554 79999999999999 788888899999999999999995 5555 8999999999999999987655
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.9e-39 Score=319.92 Aligned_cols=344 Identities=26% Similarity=0.323 Sum_probs=269.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+. .++. +..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 46888999888887 5653 7788999999999998876544 8889999999999999887766 888899999999
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++.. .+.++++|++|++++|.+.. ++ .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 120 FNNQITDID---PLKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CSSCCCCCG---GGTTCTTCSEEEEEEEEECC--CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCh---HHcCCCCCCEEECCCCccCC--Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999888763 37888999999999888743 33 47888889999886 344432 23788888999999988887
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ + ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+ +..
T Consensus 191 ~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 D-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 4 3 347788888888888888876544 67788888888888887753 456777888888888888886544 677
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++..+ +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 8888888888888875433 6778888888888888875433 6778888888888888886655 67788888888
Q ss_pred ccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 385 L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 888888854 357788888888888888887766 7788888888888888875
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.5e-39 Score=319.68 Aligned_cols=347 Identities=23% Similarity=0.348 Sum_probs=277.0
Q ss_pred cCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE
Q 012103 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (471)
..+++++.|+++++.+.. +| .+..+++|++|++++|.+++.++ +.++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 346788888998888864 44 47788899999999998887766 8888899999999998887643 788889999
Q ss_pred EEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccc
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 246 (471)
|++++|.+.. ++. +..+++|++|++++|.+.+ ++ .+..+++|+.|+++ +.+.+. + .+.++++|++|++++|.
T Consensus 117 L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITD--IDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCC--ChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCc
Confidence 9999988743 333 7888899999999988874 33 47888899999986 444432 2 37788899999999988
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhh
Q 012103 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQEL 326 (471)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~ 326 (471)
+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 261 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L 261 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--h
Confidence 8743 347788899999999988876554 66688899999999988753 356778889999999998886544 7
Q ss_pred cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCE
Q 012103 327 GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNI 406 (471)
Q Consensus 327 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 406 (471)
..+++|++|++++|.+++. +. +..+++|+.|++++|++.+..+ +..+++|+.|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 7888899999999988743 33 7778889999999998886544 7788899999999999886655 678888999
Q ss_pred eecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 407 IDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999988875 467888999999999999987776 8888899999999998885
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-38 Score=327.96 Aligned_cols=395 Identities=18% Similarity=0.163 Sum_probs=301.8
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + -+++++|+|++|.+++..+.+|.++++|++|+|++|.+++.++ .|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~-l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSS-S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCC-C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 3466677777 67754 2 2479999999999998778899999999999999999999888 7999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc-cCCccccCCCCCcEEEcccCcCCCc
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG-QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
++++..+ ..|.++++|++|++++|++.. ..+..++.+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++.
T Consensus 111 ~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 111 PIQSLAL-GAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CCCEECG-GGGTTCTTCCEEECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred cCCCCCH-HHhcCCCCCCEEECCCCcCCC-CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9998877 789999999999999999943 234568999999999999999975 4678889999999999999999987
Q ss_pred CCccccCCCCCC----eEeeccccccccCCcc------------------------ccCCC-------------------
Q 012103 227 IPSEIGNLVKLW----RLELYNNQLSGKLPVG------------------------LRNLT------------------- 259 (471)
Q Consensus 227 ~p~~~~~l~~L~----~L~l~~n~l~~~~~~~------------------------l~~l~------------------- 259 (471)
.+..+..+.+++ .++++.|.+....+.. +..+.
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 777776554433 4555555544221111 11111
Q ss_pred --------------------------------------CCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc--
Q 012103 260 --------------------------------------NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-- 299 (471)
Q Consensus 260 --------------------------------------~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-- 299 (471)
+++.+++.++.+... ..+.....++.|++.+|.+.+..+
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCccc
Confidence 222222222222211 123345567778777776543211
Q ss_pred -----------------hhccCCCCCCEEEcccCcCcc--cCchhhc-----------------------CCCCCCEEec
Q 012103 300 -----------------AELGKFKKLVNLSLYTNKLTG--ALPQELG-----------------------SWAEFDFIDV 337 (471)
Q Consensus 300 -----------------~~l~~~~~L~~L~L~~n~l~~--~~~~~~~-----------------------~~~~L~~L~L 337 (471)
.....+++|+.+++++|.+.. ..+.... .++.|+.+++
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 122356789999999988753 2333333 3445555555
Q ss_pred cCCcccccCc-hhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-ccccccccCCCCCCEeecccCccc
Q 012103 338 SENLLTGPIP-PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 338 ~~n~l~~~~p-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..+......+ ..+..+.+++.++++.|.+.+..+..+..++.++.|++++|.+. +.+|..+..+++|++|++++|+++
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 5554443333 34566788889999999999888888999999999999999855 457788999999999999999999
Q ss_pred cccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 416 GPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 416 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+..|..|.++++|++|+|++|+|++..|..+..+++|++|+|++|+|++..|..|
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 9999999999999999999999999889999999999999999999998888765
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.5e-40 Score=324.32 Aligned_cols=363 Identities=24% Similarity=0.325 Sum_probs=206.8
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCC-------------CEEeCCCCcCCccC
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKL-------------QYLDLGNNVFSGSF 130 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~ 130 (471)
..++++++++++.+ |.+|.. ++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++.+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 35688899999998 688876 8999999999999999888888888887654 88888888887644
Q ss_pred CCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCC
Q 012103 131 PEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNL 210 (471)
Q Consensus 131 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 210 (471)
.. .++|++|++++|.+++ .| .. .++|++|++++|.+.. ++.. .++|++|++++|.+++ +| .+..+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp-~~---~~~L~~L~l~~n~l~~--l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LP-EL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CC-CC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cc-cc---cCCCcEEECCCCccCc--ccCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 32 2678888888888776 33 21 3667777777776632 2221 1567777777777764 55 46777
Q ss_pred CCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEcc
Q 012103 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLF 290 (471)
Q Consensus 211 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 290 (471)
++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|.+.+.... .++|++|+++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAG 223 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECc
Confidence 777777777777663 44432 367777777777664 44 466667777777777766642221 2466666666
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc--
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG-- 368 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~-- 368 (471)
+|.+. .+|. +..+++|++|++++|++++ +|.. .++|++|++++|.+++ +|.. .++|+.|++++|.+++
T Consensus 224 ~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 66666 4453 5566666666666666653 3321 2455566666655553 3332 2344555555554443
Q ss_pred ccchh-------------hhcC-CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCC
Q 012103 369 EIPAT-------------YANC-LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAE 434 (471)
Q Consensus 369 ~~~~~-------------~~~~-~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~ 434 (471)
.+|.. +..+ ++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|+++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECC
Confidence 11111 1122 478888888888884 5653 5789999999999884 555 47899999999
Q ss_pred CCcCcc--cchhhhhcC-------------CCCCEEeccCCcCcc--cCCCCC
Q 012103 435 YNRLSG--ELPEEISKA-------------TSLVVIKLNNNQLTG--KIPASI 470 (471)
Q Consensus 435 ~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~~sg--~ip~~~ 470 (471)
+|++++ .+|..+..+ ++|+.|++++|+++| .||.++
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 999998 788888877 789999999999997 888875
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.8e-39 Score=318.19 Aligned_cols=345 Identities=18% Similarity=0.182 Sum_probs=252.2
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
.+++.|+++++.+++ +| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. .+.++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEEC
Confidence 568888888888884 44 388888888888888888764 3 78888888888888888875 3778888888888
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++. .+..+++|++|++++|.++. + .+..+++|++|++++|...+.+ .+..+++|+.|++++|.++
T Consensus 114 ~~N~l~~l----~~~~l~~L~~L~l~~N~l~~--l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 114 DTNKLTKL----DVSQNPLLTYLNCARNTLTE--I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CSSCCSCC----CCTTCTTCCEEECTTSCCSC--C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCee----cCCCCCcCCEEECCCCccce--e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 88888874 27788888888888888844 2 2677888888888888655555 4677888888888888888
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ +| +..+++|++|++++|.+++. .+..+++|++|++++|++++. + +..+++|++|++++|.+++..+ ..
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~~~---~~ 252 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTELDV---ST 252 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCCC---TT
T ss_pred e-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCcCH---HH
Confidence 5 44 67788888888888888754 377788888888888888874 3 7778888888888888886543 34
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccch--------hhhc
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPA--------TYAN 376 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~--------~~~~ 376 (471)
+++|+.|++++| +|+.|++++|.+.+.+| ...+++|+.|++++|...+.+|. .+..
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 455555555443 23344444444444444 23344555555555544433332 1344
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEe
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIK 456 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 456 (471)
+++|++|++++|++++ ++ +..+++|+.|++++|++++ ++.|..|++++|++.|. .++..|..++
T Consensus 317 ~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~ 380 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKET 380 (457)
T ss_dssp CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBC
T ss_pred cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccc
Confidence 5788899999999986 33 7888899999999998885 35667778888888876 3556678889
Q ss_pred ccCCcCcccCCCCC
Q 012103 457 LNNNQLTGKIPASI 470 (471)
Q Consensus 457 l~~n~~sg~ip~~~ 470 (471)
+++|+++|.||..+
T Consensus 381 l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 381 LTNNSLTIAVSPDL 394 (457)
T ss_dssp CBTTBEEEECCTTC
T ss_pred cccCcEEEEcChhH
Confidence 99999999998765
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=306.32 Aligned_cols=347 Identities=17% Similarity=0.142 Sum_probs=282.3
Q ss_pred cEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccC
Q 012103 93 HKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGD 171 (471)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 171 (471)
+.++.+++.++ .+|..+. +++++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCC
Confidence 56777777776 4565543 589999999999999877 89999999999999999998888 8899999999999999
Q ss_pred CCCCCCCCC-ccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc
Q 012103 172 NPFDPTPFP-DQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK 250 (471)
Q Consensus 172 n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 250 (471)
|.+. .+| ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++|.+++.
T Consensus 90 n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 90 NRLK--LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp SCCC--SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CcCC--ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 9984 334 4578899999999999999988888899999999999999999888888899999999999999999876
Q ss_pred CCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 251 LPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 251 ~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
.+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 66678889999999999999887666 78888999999999988887777776666789999999998885444567888
Q ss_pred CCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeec
Q 012103 330 AEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDI 409 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 409 (471)
++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 89999999999888766677888888999999999888888888888889999999999888666667788888999999
Q ss_pred ccCccccccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 410 ALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 410 s~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
++|++...-+..+ -......+.+.++...-.-|..+
T Consensus 328 ~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 328 DSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp CSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEESGGG
T ss_pred cCCCccCccchHh-HHhhhhccccCccCceeCCchHH
Confidence 9988875432111 11223334455555544444443
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-36 Score=300.02 Aligned_cols=322 Identities=19% Similarity=0.173 Sum_probs=242.9
Q ss_pred CCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEE
Q 012103 64 SSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLY 143 (471)
Q Consensus 64 ~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 143 (471)
..+++.|+++++.+++ ++ ++.+++|++|++++|.+++. + ++++++|++|++++|.+++. + +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~-~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D-VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C-CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c-CCCCCcCCEEE
Confidence 4679999999999985 44 88999999999999999874 3 88999999999999999985 3 88999999999
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
+++|.+++. .+..+++|++|++++|... ..+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+
T Consensus 134 l~~N~l~~l----~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 134 CARNTLTEI----DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTSCCSCC----CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred CCCCcccee----ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 999999984 3788999999999999642 223 47789999999999999996 44 88999999999999999
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCC----------c
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN----------Q 293 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n----------~ 293 (471)
++. .++.+++|++|++++|++++ +| +..+++|++|++++|.+++.. ...+++|+.|++++| .
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCc
Confidence 864 37889999999999999997 55 889999999999999998764 445566666665544 3
Q ss_pred CccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchh
Q 012103 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPAT 373 (471)
Q Consensus 294 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~ 373 (471)
+.+.+| +..+++|+.|++++|...+.+|.. .+.|+.|+ +..+++|+.|++++|++++. +
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELD-------------LSQNPKLVYLYLNNTELTEL-D-- 334 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCC-------------CTTCTTCCEEECTTCCCSCC-C--
T ss_pred cCCccc--ccccccCCEEECCCCcccceeccC---CCcceEec-------------hhhcccCCEEECCCCccccc-c--
Confidence 333333 234455555555555544444421 12222222 23345777788888877763 2
Q ss_pred hhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhh
Q 012103 374 YANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEI 446 (471)
Q Consensus 374 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l 446 (471)
+..+++|+.|++++|++++ ++.|+.|++++|.+.|. ..+..|..+++++|+++|.+|..+
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 6777788888888887774 24556666777777654 245566667777777777776654
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-36 Score=294.77 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=236.4
Q ss_pred CCCCCCCCCCce-eeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeC
Q 012103 43 FSSWVSNNHFCN-FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDL 121 (471)
Q Consensus 43 ~~~w~~~~~~c~-~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 121 (471)
+++|..+.+||. |.+..|.. ..+.+............ -..+++++.|+++++.+....+..+..+++|++|++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~-~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFE-DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76 (390)
T ss_dssp ----CCEECBCC------EEE-----ESCEECSSCCCCEESCS-SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC
T ss_pred cCCCCCccceehhhhhhccce-----eeeeeeccccccccccc-ccccCCceEEEecCCchhhCChhHhcccccCcEEEC
Confidence 568888877775 44444432 11122222111111111 235689999999999987554555788999999999
Q ss_pred CCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCcc-ccCCCCCCEEEcccccC
Q 012103 122 GNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQ-VVKLNKLNWLYLTNCSI 199 (471)
Q Consensus 122 ~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l 199 (471)
++|.+++..+ .+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+. .+|.. +..+++|++|++++|.+
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCccC--cCCHHHhcCCCCCcEEECCCCcc
Confidence 9999998887 88999999999999999998877 77889999999999999884 44544 57888999999999988
Q ss_pred cccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCC
Q 012103 200 DGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVR 279 (471)
Q Consensus 200 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 279 (471)
.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|.+.+ +...+.|++|++++|.+..... .
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~--~ 223 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG--P 223 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC--C
T ss_pred CccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc--c
Confidence 877777788888899999988888753 24567788888888887763 2344567777777777765432 2
Q ss_pred CCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCcee
Q 012103 280 FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDL 359 (471)
Q Consensus 280 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 359 (471)
..++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|.....+++|+.|
T Consensus 224 ~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300 (390)
T ss_dssp CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEE
T ss_pred ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEE
Confidence 236677777777777643 45666677777777777776666666666777777777777665 345555556666666
Q ss_pred eccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 360 LMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 360 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
++++|++. .+|..+..+++|+.|++++|++++ ++ +..+++|+.|++++|++..
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 66666666 445555666666666666666652 22 4455666666666666654
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=299.72 Aligned_cols=348 Identities=16% Similarity=0.135 Sum_probs=296.2
Q ss_pred EEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCC
Q 012103 69 EIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLS 147 (471)
Q Consensus 69 ~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 147 (471)
.++.++.+++ .+|.. + .++++.|++++|.+++..+..|.++++|++|++++|.+++..+ .+.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3555566666 66653 2 3689999999999998888899999999999999999999877 8999999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcC
Q 012103 148 GFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEI 227 (471)
Q Consensus 148 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 227 (471)
.+++..+ ..+.++++|++|++++|.+. ...+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..
T Consensus 91 ~l~~~~~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 91 RLKLIPL-GVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCCSCCT-TSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCCccCc-ccccCCCCCCEEECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 9998766 77899999999999999983 445678899999999999999999888889999999999999999999766
Q ss_pred CccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCC
Q 012103 228 PSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFK 306 (471)
Q Consensus 228 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 306 (471)
+..+.++++|++|++++|.+.+..+..+..+++|++|++++|...+..+ ......+|++|++++|.+++..+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 6778999999999999999998888889999999999999988776655 455556999999999999965556889999
Q ss_pred CCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 99999999999998777888999999999999999998889999999999999999999998777888999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+|.+....+.. +-......+.+.++...-..|..+.
T Consensus 329 ~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 329 SNPLACDCRLL-WVFRRRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SSCEECSGGGH-HHHTTTTSSCCTTCCCBEEESGGGT
T ss_pred CCCccCccchH-hHHhhhhccccCccCceeCCchHHc
Confidence 99998553321 1112233345555554444444443
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-36 Score=307.78 Aligned_cols=349 Identities=16% Similarity=0.169 Sum_probs=275.0
Q ss_pred CCCCCCCCCCCCCce----eeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCC
Q 012103 40 SSIFSSWVSNNHFCN----FTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVK 115 (471)
Q Consensus 40 ~~~~~~w~~~~~~c~----~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 115 (471)
+..+++|..+.+||. |.++.|+. .++.........+. -..+.+++.+++++|.+....+..+.++++
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~~---~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~ 76 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGFE---DITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESCS---SGGGCCCSEEEESSCEESEECTHHHHHCCC
T ss_pred cccccCCCCCCcCcccCcCceeEecCc------eecccccccccCcc---cccCCCceEEEeeCCCCCCcCHHHHccCCC
Confidence 356789988888774 65555542 12222222221111 234678999999999988665666888999
Q ss_pred CCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc-cccCCCCCCEEE
Q 012103 116 LQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD-QVVKLNKLNWLY 193 (471)
Q Consensus 116 L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~~L~~L~ 193 (471)
|++|++++|.+++.++ .+..+++|++|++++|.+++..+ ..++++++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLS--SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEE
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-HHHcCCCCCCEEEeeCCCCC--CCCHHHhccCCCCCEEE
Confidence 9999999999999888 89999999999999999998877 78899999999999999984 4454 468899999999
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+.+..|..+..+++|+.|++++|.+++. + +..+++|++|++++|.+.+ +...++|+.|++++|.+..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc
Confidence 999999988888899999999999999998854 2 5567889999999988874 3456688999999998876
Q ss_pred ccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC
Q 012103 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353 (471)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~ 353 (471)
..... .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+
T Consensus 226 ~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 226 VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 54432 3689999999998885 3667888899999999999988888888888999999999998874 67777778
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|+.|++++|++.+.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 88999999999888 5777778888899999999988843 3 56778888899988888764
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.2e-35 Score=287.83 Aligned_cols=349 Identities=23% Similarity=0.305 Sum_probs=251.7
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEc
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYL 144 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l 144 (471)
..++++++++++++ .+|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++.... .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~-~lp~~----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 71 RQAHELELNNLGLS-SLPEL----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGV 138 (454)
T ss_dssp HTCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred cCCCEEEecCCccc-cCCCC----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence 34788999999988 45542 4789999999999987 6643 47899999999999864332 169999999
Q ss_pred cCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC
Q 012103 145 NLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS 224 (471)
Q Consensus 145 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 224 (471)
++|.+++ .| .++++++|++|++++|++. .+|... .+|++|++++|.+++ +| .+..+++|+.|++++|.++
T Consensus 139 ~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~--~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 139 SNNQLEK-LP--ELQNSSFLKIIDVDNNSLK--KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CSSCCSS-CC--CCTTCTTCCEEECCSSCCS--CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred cCCCCCC-Cc--ccCCCCCCCEEECCCCcCc--ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 9999997 55 5899999999999999984 355433 589999999999986 56 6899999999999999998
Q ss_pred CcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccC
Q 012103 225 GEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGK 304 (471)
Q Consensus 225 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 304 (471)
+ +|.. ..+|++|++++|.+. .+|. +..+++|++|++++|.+.+... .+++|++|++++|.+++ +|..
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred c-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---
Confidence 5 5543 258999999999998 6774 8899999999999999986433 24889999999999985 5543
Q ss_pred CCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 305 FKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 305 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
.++|++|++++|.+++ ++.. .++|++|++++|.+++ ++. ..++|+.|++++|++++ +|.. +++|++|+
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 3789999999999986 2221 2689999999999984 332 12589999999999996 5554 58899999
Q ss_pred ccCCcCcccccccccCCCCCCEeecccCcccc--ccchhhhcc-------------CCCCeeeCCCCcCcc--cchhhhh
Q 012103 385 VSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG--PITKDIENA-------------KALNLLFAEYNRLSG--ELPEEIS 447 (471)
Q Consensus 385 L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~~~~~~~l-------------~~L~~L~l~~n~l~~--~~p~~l~ 447 (471)
+++|+++ .+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|.+
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s-- 417 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES-- 417 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh--
Confidence 9999999 5776 47899999999999999 788888888 899999999999997 67754
Q ss_pred cCCCCCEEeccCCcCcccCCCCC
Q 012103 448 KATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 448 ~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
++.|.+++|.+.+.+|.+.
T Consensus 418 ----l~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 418 ----VEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp -----------------------
T ss_pred ----HhheeCcCcccCCccccCH
Confidence 5677899999998887653
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=283.00 Aligned_cols=311 Identities=18% Similarity=0.131 Sum_probs=214.8
Q ss_pred CCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.++++++|+++++.++..++ .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+. ...|..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-hhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 35788999999998887766 46788889999999888887766 67888888888888888873 33356678888888
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCc
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (471)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|+++++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 888888888844444467888888888888888876677778888888888888887743 24566777778877776
Q ss_pred CccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhh
Q 012103 271 LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350 (471)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 350 (471)
+.+. ...++|++|++++|.+... |.. ..++|++|++++|.+++. ..+..+++|++|++++|.+++..|..+
T Consensus 198 l~~~----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 198 LSTL----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp CSEE----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccc----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 6542 2335677777777777633 322 235677777777776642 345666666667766666665556666
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++|+.|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|++++. + +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 666666666666666663 3444455666666666666666 4555555566666666666666543 2 455566666
Q ss_pred eeCCCCcCccc
Q 012103 431 LFAEYNRLSGE 441 (471)
Q Consensus 431 L~l~~n~l~~~ 441 (471)
|++++|++...
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 66666666543
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-34 Score=274.96 Aligned_cols=307 Identities=22% Similarity=0.326 Sum_probs=157.7
Q ss_pred ccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCc
Q 012103 86 ICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLV 165 (471)
Q Consensus 86 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 165 (471)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++.. ..+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~---~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI---SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC---GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc---hHHcCCCcCC
Confidence 3445566666666665542 22 35556666666666666654433 55555555555555555542 2455556666
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccc
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNN 245 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 245 (471)
+|++++|.+.. ++. +..+++|++|++++|.....+ ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|
T Consensus 114 ~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 114 ELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp EEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred EEECcCCcccC--chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 66666655521 222 455555555555555433222 225555555555555555542221 444555555555555
Q ss_pred cccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchh
Q 012103 246 QLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQE 325 (471)
Q Consensus 246 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~ 325 (471)
.+.+. +. +..+++|+.+++++|. +.+..+ +..+++|++|++++|.+++..+
T Consensus 188 ~l~~~-~~-~~~l~~L~~L~l~~n~-----------------------l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 188 QIEDI-SP-LASLTSLHYFTAYVNQ-----------------------ITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCC-GG-GGGCTTCCEEECCSSC-----------------------CCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred ccccc-cc-ccCCCccceeecccCC-----------------------CCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 54421 11 3444444444444444 442222 3344445555555554442211
Q ss_pred hcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCC
Q 012103 326 LGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVN 405 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 405 (471)
+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 4444555555555555542 2 2344555555555555555532 2355566666666666666655555566666666
Q ss_pred EeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 406 IIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 406 ~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+|++++|++++..| +..+++|+.|++++|.++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666666665444 556666666666666654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.7e-34 Score=274.09 Aligned_cols=307 Identities=22% Similarity=0.335 Sum_probs=219.6
Q ss_pred ccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCC
Q 012103 110 LNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKL 189 (471)
Q Consensus 110 ~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 189 (471)
+..+++|++|+++++.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i--------------- 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKI--------------- 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC---------------
T ss_pred chhcccccEEEEeCCccccc-hhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcc---------------
Confidence 44667777788777777643 345566666666666666554321 55555555555555554
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (471)
.. + ..+..+++|++|++++|.+.+ ++. +..+++|++|++++|......+ .+..+++|++|++++|
T Consensus 101 ----------~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 101 ----------TD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES 165 (347)
T ss_dssp ----------CC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred ----------cC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence 32 1 124444444555554444442 222 4445555555555553332222 2555666666666666
Q ss_pred cCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchh
Q 012103 270 FLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 270 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++ ++.
T Consensus 166 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~- 238 (347)
T 4fmz_A 166 KVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP- 238 (347)
T ss_dssp CCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-
T ss_pred CcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-
Confidence 6554333 5566778888888887774333 7788999999999999985544 7889999999999999984 444
Q ss_pred hcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCC
Q 012103 350 MCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALN 429 (471)
Q Consensus 350 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~ 429 (471)
+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++ + ..+..+++|+.|++++|++.+..|..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 88899999999999999863 468899999999999999995 4 4588999999999999999999999999999999
Q ss_pred eeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 430 LLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 430 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
.|++++|++++..| +..+++|+.|++++|+|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999997666 889999999999999986
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-34 Score=294.92 Aligned_cols=311 Identities=18% Similarity=0.129 Sum_probs=223.2
Q ss_pred CCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCC
Q 012103 112 NCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLN 190 (471)
Q Consensus 112 ~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~ 190 (471)
.+.+++.+++++|.+.+.++ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. ...|..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-YAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-HHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 35788999999999988777 57788999999999999988777 78888899999999998883 33456678888888
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCc
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNF 270 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 270 (471)
+|++++|.+++..+..|..+++|+.|++++|.+.+..|..+.++++|++|++++|.+++. .+..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 888888888855555568888888888888888877777788888888888888888753 24567778888888877
Q ss_pred CccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhh
Q 012103 271 LEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDM 350 (471)
Q Consensus 271 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 350 (471)
+.+. ...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+
T Consensus 204 l~~l----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 204 LSTL----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CSEE----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cccc----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence 6642 234567777777777763322 21 2567777777777764 2456666677777777777766666666
Q ss_pred cCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 351 CKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 351 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+.. +..+++|+.
T Consensus 275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 666677777777776664 4455555666777777776666 45555666666667777766666432 455566666
Q ss_pred eeCCCCcCccc
Q 012103 431 LFAEYNRLSGE 441 (471)
Q Consensus 431 L~l~~n~l~~~ 441 (471)
|++++|++.+.
T Consensus 350 L~l~~N~~~~~ 360 (597)
T 3oja_B 350 LTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCEEHH
T ss_pred EEeeCCCCCCh
Confidence 66666666654
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.2e-35 Score=275.52 Aligned_cols=251 Identities=28% Similarity=0.458 Sum_probs=164.4
Q ss_pred CCCEEEcccccCcc--cCCccccCCCCCcEEEccc-CcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEE
Q 012103 188 KLNWLYLTNCSIDG--QIPVEIGNLTELINLELSD-NNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264 (471)
Q Consensus 188 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (471)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~------- 123 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-------
Confidence 45555555555555 4555555555555555553 5555555555555555555555555555445544444
Q ss_pred eCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCC-CCCEEeccCCccc
Q 012103 265 DASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWA-EFDFIDVSENLLT 343 (471)
Q Consensus 265 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~ 343 (471)
+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ .|++|++++|.++
T Consensus 124 ----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 124 ----------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp ----------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred ----------------CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 45555555555555555566666666666666666666666666666665 6677777777766
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+.+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+.
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 66666666665 77777777777766777777777777777777777755554 66677777888888877777777777
Q ss_pred ccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc-Ccc
Q 012103 424 NAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ-LTG 464 (471)
Q Consensus 424 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~sg 464 (471)
.+++|+.|++++|+++|.+|.. .++++|+.+++++|+ +.|
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 7778888888888887777765 677777888888877 555
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.5e-37 Score=304.45 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=199.6
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCc----cccccccCCCCCCEEeCCCCcCCccCC-C-CCCCC-
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYG----EISKDLNNCVKLQYLDLGNNVFSGSFP-E-ISSLN- 137 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-~-l~~l~- 137 (471)
.++++|+++++++........+..+++|++|++++|.++. .++..+..+++|++|++++|.+++..+ . ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4688899998888744333336778899999999998874 356677888899999999988875332 1 12233
Q ss_pred ---CCCEEEccCCCCcc----cCCcccccCCCCCcEEEccCCCCCCCC---CCcc-ccCCCCCCEEEcccccCccc----
Q 012103 138 ---ELQHLYLNLSGFSG----VFPWMSLGNMTNLVSLSVGDNPFDPTP---FPDQ-VVKLNKLNWLYLTNCSIDGQ---- 202 (471)
Q Consensus 138 ---~L~~L~l~~n~l~~----~~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~-l~~l~~L~~L~l~~n~l~~~---- 202 (471)
+|++|++++|.++. ..+ ..+..+++|++|++++|.+.... +... ....++|++|++++|.+++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888887774 234 56677777777777777763211 0111 11245677777777766642
Q ss_pred CCccccCCCCCcEEEcccCcCCCcCCcccc-----CCCCCCeEeecccccccc----CCccccCCCCCCEEeCCCCcCcc
Q 012103 203 IPVEIGNLTELINLELSDNNISGEIPSEIG-----NLVKLWRLELYNNQLSGK----LPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 203 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 244455566777777777766543333332 234666666666666542 34445556666666666666543
Q ss_pred cc-----c-cCCCCCCCCEEEccCCcCccc----cchhccCCCCCCEEEcccCcCcccCchhhc-----CCCCCCEEecc
Q 012103 274 DL-----S-EVRFLTNLVTLQLFKNQFSGE----VPAELGKFKKLVNLSLYTNKLTGALPQELG-----SWAEFDFIDVS 338 (471)
Q Consensus 274 ~~-----~-~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~L~ 338 (471)
.. + ....+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 21 1 222355666666666665543 344444555666666666655433222221 12455555555
Q ss_pred CCccccc----CchhhcCCCCCceeeccCCccccccchhhhc-----CCCCcEEEccCCcCcc----cccccccCCCCCC
Q 012103 339 ENLLTGP----IPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-----CLTLQRFRVSNNSLKG----TVPAGIWGLPEVN 405 (471)
Q Consensus 339 ~n~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~L~~n~~~~----~~~~~~~~~~~L~ 405 (471)
+|.+++. ++..+..+++|+.|++++|.+++..+..+.. .++|++|++++|++++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 5555433 3334444455555555555554433332221 3455555555555553 3444444455555
Q ss_pred EeecccCcccc
Q 012103 406 IIDIALNQIEG 416 (471)
Q Consensus 406 ~L~ls~n~~~~ 416 (471)
+|++++|++++
T Consensus 402 ~L~l~~N~i~~ 412 (461)
T 1z7x_W 402 ELDLSNNCLGD 412 (461)
T ss_dssp EEECCSSSCCH
T ss_pred EEECCCCCCCH
Confidence 55555555543
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.2e-36 Score=301.83 Aligned_cols=377 Identities=16% Similarity=0.108 Sum_probs=292.1
Q ss_pred CCCCcEEeCCCCCCCccccc-cccCCCCCCEEeCCCCcCCcc----CC-CCCCCCCCCEEEccCCCCcccCCcccccCCC
Q 012103 89 LQALHKLSLGFNSLYGEISK-DLNNCVKLQYLDLGNNVFSGS----FP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMT 162 (471)
Q Consensus 89 l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~----~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 162 (471)
.++|++|++++|.++..... .+..+++|++|++++|.+++. ++ .+..+++|++|++++|.+....+......++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999999754433 378899999999999999853 23 5778899999999999987643312233444
Q ss_pred ----CCcEEEccCCCCCC---CCCCccccCCCCCCEEEcccccCcccCCcccc-----CCCCCcEEEcccCcCCCcC---
Q 012103 163 ----NLVSLSVGDNPFDP---TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG-----NLTELINLELSDNNISGEI--- 227 (471)
Q Consensus 163 ----~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~--- 227 (471)
+|++|++++|.++. ..++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999843 23577888999999999999998754443332 3568999999999988643
Q ss_pred -CccccCCCCCCeEeeccccccccCCcccc-----CCCCCCEEeCCCCcCccc----cc-cCCCCCCCCEEEccCCcCcc
Q 012103 228 -PSEIGNLVKLWRLELYNNQLSGKLPVGLR-----NLTNLANFDASTNFLEGD----LS-EVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 228 -p~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~~-~~~~~~~L~~L~l~~n~l~~ 296 (471)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++ .+..+++|++|++++|.+++
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55667789999999999998755444443 367999999999998864 22 56678999999999999886
Q ss_pred cc-----chhccCCCCCCEEEcccCcCccc----CchhhcCCCCCCEEeccCCcccccCchhhcC-----CCCCceeecc
Q 012103 297 EV-----PAELGKFKKLVNLSLYTNKLTGA----LPQELGSWAEFDFIDVSENLLTGPIPPDMCK-----RGTMRDLLML 362 (471)
Q Consensus 297 ~~-----~~~l~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----~~~L~~L~l~ 362 (471)
.. +.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 43 22333578999999999999864 5667778899999999999987554443332 3699999999
Q ss_pred CCccccc----cchhhhcCCCCcEEEccCCcCccccccccc----C-CCCCCEeecccCcccc----ccchhhhccCCCC
Q 012103 363 QNKFTGE----IPATYANCLTLQRFRVSNNSLKGTVPAGIW----G-LPEVNIIDIALNQIEG----PITKDIENAKALN 429 (471)
Q Consensus 363 ~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~----~-~~~L~~L~ls~n~~~~----~~~~~~~~l~~L~ 429 (471)
+|.+++. ++..+..+++|++|++++|.+++..+..+. . .++|++|++++|++++ .+|..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9999865 566778889999999999999865444333 2 6799999999999987 7888889999999
Q ss_pred eeeCCCCcCcccchhhhhc-----CCCCCEEeccCCcCccc
Q 012103 430 LLFAEYNRLSGELPEEISK-----ATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 430 ~L~l~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~~sg~ 465 (471)
+|++++|++++.....+.. ..+|+.|++.++.+...
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 9999999998654433332 34689999988887643
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.3e-34 Score=272.15 Aligned_cols=279 Identities=19% Similarity=0.206 Sum_probs=196.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCceeeceEeCC--------CCCCEEEEEcCCCCCccccCcccc
Q 012103 19 CINSDELQILLNLKTSLKDSKSSIFSSW----VSNNHFCNFTGITCNS--------DSSFVQEIELSNRNLKGTLPFDSI 86 (471)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~gv~c~~--------~~~~v~~L~L~~~~l~g~l~~~~~ 86 (471)
++..+|++||++||+++..+..+....| ....++|.|.|+.|+. ...+|+.|+|+++.+. .+|.. +
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~-l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ-A 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC-G
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh-h
Confidence 4556899999999998843333556788 4567899999999952 2467889999998888 77766 7
Q ss_pred cCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE
Q 012103 87 CQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 87 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 166 (471)
..+++|++|++++|.++ .+|..+.++++|++|++++|.++..+..+.++++|++|++++|.+.+..| ..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~------ 172 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP-EPLAS------ 172 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEE------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC-hhHhh------
Confidence 77888888888888888 78888888888888888888888443377788888888888877777666 33322
Q ss_pred EEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccc
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQ 246 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 246 (471)
...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 173 ----------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 173 ----------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ----------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCT
T ss_pred ----------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCc
Confidence 001122334556666666666665 55555666666666666666666 344456666666666666666
Q ss_pred ccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCc
Q 012103 247 LSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLT 319 (471)
Q Consensus 247 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~ 319 (471)
+.+.+|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.+|..+.++++++.+++..+.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 666666666666666666666666665555 5666777777777777777777777777888888877765554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.8e-32 Score=257.57 Aligned_cols=268 Identities=21% Similarity=0.218 Sum_probs=172.7
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeC
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (471)
+++++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 35555555555555444445555555555555555555544555555555666666555555 3333322 45666666
Q ss_pred CCCcCccccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 267 STNFLEGDLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 267 ~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
++|.+.+..+ .+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC
Confidence 6666655444 45566666666666666642 44556666777777777777776 3444332 57777777777777
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 666677777777777777777777666667777788888888888877 6777777778888888888888766555554
Q ss_pred c------cCCCCeeeCCCCcCcc--cchhhhhcCCCCCEEeccCCc
Q 012103 424 N------AKALNLLFAEYNRLSG--ELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 424 ~------l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~ 461 (471)
. .+.++.+++++|.+.. ..|..+..++.++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3 3677788888888753 556677778888888888875
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-31 Score=254.12 Aligned_cols=293 Identities=16% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+++.++++++.+. .+|..+. +.|++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEEC
Confidence 5666666666665 3444332 466666666666666555 56666666666666666665545 45555555555555
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
++|.+. .+|..+. ++|++|+ +++|.+.+..+..+.++++|++|++++|.+..
T Consensus 108 s~n~l~--~l~~~~~--~~L~~L~------------------------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLK--ELPEKMP--KTLQELR------------------------VHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCS--BCCSSCC--TTCCEEE------------------------CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCC--ccChhhc--ccccEEE------------------------CCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 555552 2232222 3444444 44444443333334444444444444444431
Q ss_pred --cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhc
Q 012103 250 --KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG 327 (471)
Q Consensus 250 --~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~ 327 (471)
..+..+..+++|++|++++|.+......+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 237 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc
Confidence 33444555555555555555554332222 15566666666666655556666666666666666666655555555
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
.+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.... .....+.++.+
T Consensus 238 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l 298 (330)
T 1xku_A 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGV 298 (330)
T ss_dssp GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEE
T ss_pred CCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccce
Confidence 6666666666666665 5555555555566666666655544333332210 00012344555
Q ss_pred ecccCcccc--ccchhhhccCCCCeeeCCCC
Q 012103 408 DIALNQIEG--PITKDIENAKALNLLFAEYN 436 (471)
Q Consensus 408 ~ls~n~~~~--~~~~~~~~l~~L~~L~l~~n 436 (471)
++++|++.. ..|..+..+..++.+++++|
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 555555432 33445555555555555555
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.5e-32 Score=259.31 Aligned_cols=267 Identities=21% Similarity=0.233 Sum_probs=170.8
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeC
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDA 266 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 266 (471)
++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 35555555555555444445555555555555555555444555555555555555555555 3333332 55666666
Q ss_pred CCCcCccccc-cCCCCCCCCEEEccCCcCcc--ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccc
Q 012103 267 STNFLEGDLS-EVRFLTNLVTLQLFKNQFSG--EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLT 343 (471)
Q Consensus 267 ~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 343 (471)
++|.+.+..+ .+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.++
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 6666654444 45556666666666666642 444555555 67777777777763 444332 56777777777777
Q ss_pred ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 344 GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 344 ~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
+..|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..+.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 665666777777777777777777666667777778888888888777 6777777777888888888887766655554
Q ss_pred c------cCCCCeeeCCCCcCc--ccchhhhhcCCCCCEEeccCCc
Q 012103 424 N------AKALNLLFAEYNRLS--GELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 424 ~------l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
. .+.|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 4 356778888888876 5677778888888888888875
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1e-31 Score=256.05 Aligned_cols=289 Identities=18% Similarity=0.165 Sum_probs=136.6
Q ss_pred CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEc
Q 012103 91 ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSV 169 (471)
Q Consensus 91 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 169 (471)
+++.++++++.++ .+|..+. ++|++|++++|.+++..+ .+.++++|++|++++|.+++..| ..+.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEEC
Confidence 5666666666665 4444432 466666666666666555 56666666666666666665545 55556666666666
Q ss_pred cCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 170 GDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 170 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++. .+
T Consensus 110 ~~n~l~--~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~ 163 (332)
T 2ft3_A 110 SKNHLV--EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SG 163 (332)
T ss_dssp CSSCCC--SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GG
T ss_pred CCCcCC--ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CC
Confidence 666552 2333322 445555555554443333334444444444444444431 01
Q ss_pred cCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCC
Q 012103 250 KLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSW 329 (471)
Q Consensus 250 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~ 329 (471)
..+..+..+ +|++|++++|.+++.+..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred CCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 222222222 33333333333332211111 344444444444443333444444444444444444443333334444
Q ss_pred CCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC------CCC
Q 012103 330 AEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG------LPE 403 (471)
Q Consensus 330 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~------~~~ 403 (471)
++|++|++++|.++ .+|.. +..+++|+.|++++|++++..+..+.. .+.
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~------------------------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAG------------------------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTT------------------------GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCe-ecChh------------------------hhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 44444444444443 34443 444444444444444444322222222 244
Q ss_pred CCEeecccCccc--cccchhhhccCCCCeeeCCCCc
Q 012103 404 VNIIDIALNQIE--GPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 404 L~~L~ls~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 566666666655 4455556666666666666653
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=248.38 Aligned_cols=280 Identities=20% Similarity=0.235 Sum_probs=198.0
Q ss_pred CCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc
Q 012103 46 WVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV 125 (471)
Q Consensus 46 w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 125 (471)
|......|.|.++ |+ +++++++ .+|.. + .++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLN-SIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCS-SCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCccCCCCCCCeE-ee----------CCCCCcc-ccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 4445667888776 54 4566776 67754 3 3589999999999987666689999999999999999
Q ss_pred CCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCc--cccCCCCCCEEEccccc-Ccc
Q 012103 126 FSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPD--QVVKLNKLNWLYLTNCS-IDG 201 (471)
Q Consensus 126 l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~-l~~ 201 (471)
+++..+ .+.++++|++|++++|.+++..+ ..+.++++|++|++++|.+. .+|. .+..+++|++|++++|. +..
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYK--TLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCc--ccCchhhhccCCCCcEEECCCCccccc
Confidence 998877 78999999999999999987655 56889999999999999984 3444 67889999999999984 666
Q ss_pred cCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc----c
Q 012103 202 QIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS----E 277 (471)
Q Consensus 202 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~ 277 (471)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|.+.+... .
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 666788888999999999999888778888888899999999888864333334567888888888887775432 1
Q ss_pred CCCCCCCCEEEccCCcCcc----ccchhccCCCCCCEEEcccCcCcccCchh-hcCCCCCCEEeccCCcccc
Q 012103 278 VRFLTNLVTLQLFKNQFSG----EVPAELGKFKKLVNLSLYTNKLTGALPQE-LGSWAEFDFIDVSENLLTG 344 (471)
Q Consensus 278 ~~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~ 344 (471)
......++.++++++.+.+ .+|..+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+++
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 2223445555555555543 23344444455555555555544 23332 2444444444444444443
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=8.5e-33 Score=284.63 Aligned_cols=376 Identities=14% Similarity=0.067 Sum_probs=279.4
Q ss_pred CCCCCcEEeCCCCCCCccccccccC-CC-CCCEEeCCCCcC-Cc-cCC-CCCCCCCCCEEEccCCCCcccCC---ccccc
Q 012103 88 QLQALHKLSLGFNSLYGEISKDLNN-CV-KLQYLDLGNNVF-SG-SFP-EISSLNELQHLYLNLSGFSGVFP---WMSLG 159 (471)
Q Consensus 88 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~n~l-~~-~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~~~ 159 (471)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.- +. ..+ ...++++|++|++++|.+++... .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6888999999998887766666655 34 499999988862 11 111 23478899999999998765422 02456
Q ss_pred CCCCCcEEEccCCCCCC---CCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCC---CcCCccccC
Q 012103 160 NMTNLVSLSVGDNPFDP---TPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNIS---GEIPSEIGN 233 (471)
Q Consensus 160 ~l~~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~~~~ 233 (471)
.+++|++|++++|.+.. ..++..+..+++|++|++++|.+.+ ++..+..+++|+.|++++.... +..+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 78899999999988741 2234455678999999999988875 6677888899999999864322 234456677
Q ss_pred CCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccCCCCCCEE
Q 012103 234 LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNL 311 (471)
Q Consensus 234 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 311 (471)
+++|+++.+.++.. +.++..+..+++|++|++++|.+.+... .+..+++|++|+++++...+.++.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 88999999887543 3567778889999999999998764433 46788999999999443333444555678899999
Q ss_pred Ecc-----------cCcCccc-CchhhcCCCCCCEEeccCCcccccCchhhcC-CCCCceeecc----CCccccc-----
Q 012103 312 SLY-----------TNKLTGA-LPQELGSWAEFDFIDVSENLLTGPIPPDMCK-RGTMRDLLML----QNKFTGE----- 369 (471)
Q Consensus 312 ~L~-----------~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-~~~L~~L~l~----~n~~~~~----- 369 (471)
+++ .+.+++. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 999 3566643 2333456899999999989998777777665 8899999996 6677753
Q ss_pred cchhhhcCCCCcEEEccCCc--Ccccccccc-cCCCCCCEeecccCccccc-cchhhhccCCCCeeeCCCCcCccc-chh
Q 012103 370 IPATYANCLTLQRFRVSNNS--LKGTVPAGI-WGLPEVNIIDIALNQIEGP-ITKDIENAKALNLLFAEYNRLSGE-LPE 444 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~--~~~~~~~~~-~~~~~L~~L~ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~p~ 444 (471)
++..+..+++|+.|++++|. +++..+..+ ..+++|++|++++|++++. ++..+.++++|+.|++++|.+++. ++.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 44557789999999998644 665544444 3488999999999999873 455667899999999999998755 455
Q ss_pred hhhcCCCCCEEeccCCcCccc
Q 012103 445 EISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ 465 (471)
.+..+++|+.|++++|++++.
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhcCccCeeECcCCcCCHH
Confidence 567899999999999999864
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=245.31 Aligned_cols=276 Identities=14% Similarity=0.095 Sum_probs=149.8
Q ss_pred CCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeE
Q 012103 161 MTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRL 240 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 240 (471)
++.....+.+++.+ ..+|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l--~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSL--NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTC--SSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCc--cccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34445566666666 33454433 467777777777765555566677777777777777766556666666777777
Q ss_pred eeccccccccCCccccCCCCCCEEeCCCCcCccccc--cCCCCCCCCEEEccCCc-CccccchhccCCCCCCEEEcccCc
Q 012103 241 ELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS--EVRFLTNLVTLQLFKNQ-FSGEVPAELGKFKKLVNLSLYTNK 317 (471)
Q Consensus 241 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~n~ 317 (471)
++++|.+++..+..+.++++|++|++++|.+.+... .+..+++|++|++++|. +.+..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 777776664433446666666666666666664433 45556666666666663 444444555556666666666666
Q ss_pred CcccCchhhcCCCCCCEEeccCCcccccCchh-hcCCCCCceeeccCCccccccchhh---hcCCCCcEEEccCCcCcc-
Q 012103 318 LTGALPQELGSWAEFDFIDVSENLLTGPIPPD-MCKRGTMRDLLMLQNKFTGEIPATY---ANCLTLQRFRVSNNSLKG- 392 (471)
Q Consensus 318 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~~- 392 (471)
+.+..|..+..+++|++|++++|.++ .+|.. +..+++|+.|++++|.+++..+..+ .....++.++++++.+.+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 66555555556666666666666554 33332 2235555566665555554332222 123344444444444443
Q ss_pred ---cccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 393 ---TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 393 ---~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
.+|..+..+++|++|++++|+++...+..+.++++|+.|++++|++.+.
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 2334444444444444444444422112234444444444444444433
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.1e-29 Score=234.66 Aligned_cols=262 Identities=18% Similarity=0.181 Sum_probs=186.4
Q ss_pred CCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCc--CCccccCCCCCCeEeeccccccccCCccccCCCCCCEE
Q 012103 187 NKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGE--IPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANF 264 (471)
Q Consensus 187 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 264 (471)
++|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4666666666666633333456667777777777766522 2455556677777777777766 355556677777777
Q ss_pred eCCCCcCccccc--cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcc-cCchhhcCCCCCCEEeccCCc
Q 012103 265 DASTNFLEGDLS--EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTG-ALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 265 ~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~ 341 (471)
++++|.+.+..+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 777777765543 56677788888888888777777777778888888888888875 467777778888888888888
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCC-CCCEeecccCccccccc-
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP-EVNIIDIALNQIEGPIT- 419 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~ls~n~~~~~~~- 419 (471)
+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..++ +|++|++++|++.+..+
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 8766677777788888888888888876666778888888888888888877777777774 78888888888876422
Q ss_pred -hhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 420 -KDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 420 -~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
....-+...+.+.+..+.+....|..+...
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 222233445556667777777777776553
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=9.7e-30 Score=239.57 Aligned_cols=278 Identities=16% Similarity=0.152 Sum_probs=219.0
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc--CCccccCCCCCCEEeCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK--LPVGLRNLTNLANFDAS 267 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~ 267 (471)
+.++.+++.++ .+|..+. +++++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777776 4555443 6899999999999854444578899999999999988733 35667778999999999
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-c
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-P 345 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 345 (471)
+|.+......+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99888665577788999999999999886544 567888899999999999988778888888999999999998876 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 77788888899999999999888778888888999999999999987666678888899999999999988888888887
Q ss_pred C-CCCeeeCCCCcCcccch--hhhhcCCCCCEEeccCCcCcccCCCCC
Q 012103 426 K-ALNLLFAEYNRLSGELP--EEISKATSLVVIKLNNNQLTGKIPASI 470 (471)
Q Consensus 426 ~-~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~l~~n~~sg~ip~~~ 470 (471)
+ +|+.|++++|.+.+.-+ ....-+...+.+.+..+.+....|..+
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 4 89999999998876422 111222334455566677776666653
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=7.4e-29 Score=235.32 Aligned_cols=235 Identities=14% Similarity=0.141 Sum_probs=156.0
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
.++++.|++++|.+. .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.+...+..+..+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356667777777666 56666666666777777766666 5565566666666666665555532224444555555555
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|++.+.+|..+.. . ..+..+.++++|++|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 555444444443322 0 00011233677777777777776 677777777777777777777773
Q ss_pred cchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 370 IPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|++.+.+|+.+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 55567777777777777777777777777777778888888877777777777777888888888877777888888888
Q ss_pred CCCCEEeccCCcCc
Q 012103 450 TSLVVIKLNNNQLT 463 (471)
Q Consensus 450 ~~L~~L~l~~n~~s 463 (471)
++|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 88888877776665
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.1e-31 Score=271.38 Aligned_cols=406 Identities=12% Similarity=0.065 Sum_probs=298.2
Q ss_pred CceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCC---cccccccc------------CCCCC
Q 012103 52 FCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLY---GEISKDLN------------NCVKL 116 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~------------~l~~L 116 (471)
|++|.++.+.. . +.+.+.+. +. ..+...+..+++|++|+++++... +.+|..++ .+++|
T Consensus 41 ck~W~~~~~~~-~---~~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 41 CRRWFKIDSET-R---EHVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp CHHHHHHHHHH-C---CEEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred hHHHHHhhhcc-c---cEEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 44788875432 1 23333322 22 334445678999999999875431 22332222 78999
Q ss_pred CEEeCCCCcCCccCC-CCCC-CCC-CCEEEccCCCC-ccc-CCcccccCCCCCcEEEccCCCCCCCC---CCccccCCCC
Q 012103 117 QYLDLGNNVFSGSFP-EISS-LNE-LQHLYLNLSGF-SGV-FPWMSLGNMTNLVSLSVGDNPFDPTP---FPDQVVKLNK 188 (471)
Q Consensus 117 ~~L~l~~n~l~~~~~-~l~~-l~~-L~~L~l~~n~l-~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~---~~~~l~~l~~ 188 (471)
++|+|++|.+++..+ .+.. +++ |++|++++|.. +.. .+ ....++++|++|++++|.+.... ++.....+++
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL-SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH-HHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH-HHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 999999998876544 4444 344 99999999862 211 11 23357899999999999874332 3345567899
Q ss_pred CCEEEcccccCc----ccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccc---ccCCccccCCCCC
Q 012103 189 LNWLYLTNCSID----GQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS---GKLPVGLRNLTNL 261 (471)
Q Consensus 189 L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L 261 (471)
|++|++++|.+. +.++..+..+++|+.|++++|.+.+ +|..+.++++|++|+++..... ...+..+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 999999999987 3455566789999999999999884 7788899999999999864332 2344567888999
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccC-
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSE- 339 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~- 339 (471)
+.++++++........+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 99999986544344467778999999999999875544 4468899999999994433334445556789999999993
Q ss_pred ----------Cccccc-CchhhcCCCCCceeeccCCccccccchhhhc-CCCCcEEEcc----CCcCccc-----ccccc
Q 012103 340 ----------NLLTGP-IPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-CLTLQRFRVS----NNSLKGT-----VPAGI 398 (471)
Q Consensus 340 ----------n~l~~~-~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~----~n~~~~~-----~~~~~ 398 (471)
+.+++. ++.....+++|+.|+++.+.+++..+..+.. +++|+.|+++ .|.+++. ++..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 556543 2233456899999999999999877777765 9999999996 6777753 44456
Q ss_pred cCCCCCCEeecccCc--cccccchhhhc-cCCCCeeeCCCCcCcc-cchhhhhcCCCCCEEeccCCcCccc
Q 012103 399 WGLPEVNIIDIALNQ--IEGPITKDIEN-AKALNLLFAEYNRLSG-ELPEEISKATSLVVIKLNNNQLTGK 465 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~--~~~~~~~~~~~-l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~~sg~ 465 (471)
..+++|+.|++++|. +++..+..+.. +++|+.|++++|++++ .++..+..+++|+.|++++|+|++.
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 779999999998544 77666666554 8999999999999986 4566678899999999999998754
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.1e-28 Score=226.83 Aligned_cols=268 Identities=16% Similarity=0.133 Sum_probs=138.9
Q ss_pred cEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeecc
Q 012103 165 VSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYN 244 (471)
Q Consensus 165 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 244 (471)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ--AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS--SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc--cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 44555555442 223222 24555555555555544444455555555555555555544444444455555555555
Q ss_pred cc-ccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 245 NQ-LSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 245 n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
|. +....+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 90 n~~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 90 NAQLRSVDPAT-----------------------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CTTCCCCCTTT-----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccccCHHH-----------------------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 43 33332333 4444555555555555554444455555555555555555554444
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44555555666666666555333334555566666666666666555666666666666666666666544455666666
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhc--CCCCCEEeccCC
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISK--ATSLVVIKLNNN 460 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~--l~~L~~L~l~~n 460 (471)
|++|++++|++....+.. .-...++.+....+.+....|+.+.. +..++..++.+|
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 666666666665432211 11122334445566666666666543 233444444444
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.9e-28 Score=223.38 Aligned_cols=224 Identities=19% Similarity=0.152 Sum_probs=175.1
Q ss_pred CEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcc
Q 012103 140 QHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELS 219 (471)
Q Consensus 140 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 219 (471)
+.++.+++.++..+. .-.++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 678888888876532 235799999999999943 334678999999999999999998888999999999999999
Q ss_pred cCc-CCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccc
Q 012103 220 DNN-ISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGE 297 (471)
Q Consensus 220 ~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~ 297 (471)
+|. +.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 776668889999999999999999997777788888888888888888876655 467777788888887777755
Q ss_pred cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 298 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
.+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 55566777777777777777776666666677777777777777765444556666666666666666653
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.5e-27 Score=235.42 Aligned_cols=247 Identities=17% Similarity=0.195 Sum_probs=189.0
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
..+.++.++..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567777777777 5666554 578889999998887778888888889999998888887777788888888888888
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCccccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
+|.+.+..+ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.++ .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 888886666 57778888888888888886666677888888888888744333444 35777788888888888877 3
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 46667777888888887777777777777777777777777776667777777777777777777776666667777
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|++++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 77777777777664
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=235.13 Aligned_cols=247 Identities=16% Similarity=0.170 Sum_probs=202.7
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
..+.++.++..++ .+|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4667888888887 5676654 689999999999987777888999999999999999987777888899999999999
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCccccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGP 345 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~ 345 (471)
+|.++...+ .+..+++|++|++++|.+....+..+..+++|++|++++|...+.++ ..+.++++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999887666 68888999999999999887666788888999999998854443444 46778888999999998887 5
Q ss_pred CchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhcc
Q 012103 346 IPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 346 ~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
+| .+..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 66 46777888888888888887778888888888888888888887777778888888888888888887777777788
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 88888888888765
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.2e-29 Score=239.49 Aligned_cols=245 Identities=17% Similarity=0.197 Sum_probs=167.6
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccc-ccCCcccc-------CCCCCCEEeCCCCcCccccc-cC--
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLS-GKLPVGLR-------NLTNLANFDASTNFLEGDLS-EV-- 278 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~-~~-- 278 (471)
.++|+.+++++|.+ .+|..+... +++|++++|.+. ..++..+. ++++|++|++++|.+++..+ .+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 344444332 555555555552 23343333 45666666666666665444 22
Q ss_pred CCCCCCCEEEccCCcCccccchhccCC-----CCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCccccc--Cchhh-
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKF-----KKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGP--IPPDM- 350 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~~- 350 (471)
..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6667777777777777755 5555554 7778888888887766667777777888888888876654 23344
Q ss_pred -cCCCCCceeeccCCcccc--cc-chhhhcCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccccccchhhhcc
Q 012103 351 -CKRGTMRDLLMLQNKFTG--EI-PATYANCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIEGPITKDIENA 425 (471)
Q Consensus 351 -~~~~~L~~L~l~~n~~~~--~~-~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l 425 (471)
..+++|+.|++++|++++ .+ ...+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 667788888888888773 22 2344677888888888888887664 44566788999999999888 6666665
Q ss_pred CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 426 KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 426 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 7889999999999855 65 8888999999999999885
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=233.04 Aligned_cols=248 Identities=20% Similarity=0.180 Sum_probs=220.4
Q ss_pred CCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEee
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 242 (471)
..+.++.++..+ ..+|..+. +++++|++++|.+.+..+..|.++++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNL--REVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCC--SSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCc--CcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 467888888887 45666554 68999999999999888889999999999999999999877788999999999999
Q ss_pred ccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCcccc-chhccCCCCCCEEEcccCcCcc
Q 012103 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
++|.+++..+..+..+++|++|++++|.+....+ .+..+++|++|++++|+..+.+ +..+..+++|++|++++|.++
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9999997666789999999999999999997766 7889999999999995544344 457889999999999999998
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG 400 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 400 (471)
.+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 556 4788899999999999999888899999999999999999999988999999999999999999999777777889
Q ss_pred CCCCCEeecccCcccc
Q 012103 401 LPEVNIIDIALNQIEG 416 (471)
Q Consensus 401 ~~~L~~L~ls~n~~~~ 416 (471)
+++|+.|++++|++.-
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 9999999999998864
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-29 Score=239.55 Aligned_cols=266 Identities=15% Similarity=0.143 Sum_probs=173.4
Q ss_pred CcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeec
Q 012103 164 LVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELY 243 (471)
Q Consensus 164 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 243 (471)
++..+++.+.+ .......+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 44455555544 11112333455678888888888776666677777888888888887765443 6777778888887
Q ss_pred cccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 244 NNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 244 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
+|.+++. ...++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 7777632 2346777777777777655432 25667777777777776656666667777777777777776555
Q ss_pred hhh-cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCC
Q 012103 324 QEL-GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLP 402 (471)
Q Consensus 324 ~~~-~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~ 402 (471)
..+ ..+++|++|++++|.+++. |. ...+++|+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 544 3567777777777777633 32 2236677777777777774 3344666777777777777777 4566666777
Q ss_pred CCCEeecccCccc-cccchhhhccCCCCeeeCCC-CcCcccch
Q 012103 403 EVNIIDIALNQIE-GPITKDIENAKALNLLFAEY-NRLSGELP 443 (471)
Q Consensus 403 ~L~~L~ls~n~~~-~~~~~~~~~l~~L~~L~l~~-n~l~~~~p 443 (471)
+|+.|++++|++. +.+|..+..++.|+.+++.+ +.+.|..|
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 7777777777776 56666666777777777763 34444443
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.4e-27 Score=233.57 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=220.1
Q ss_pred CCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEee
Q 012103 163 NLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLEL 242 (471)
Q Consensus 163 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 242 (471)
....++.++..+ ..+|..+. +++++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l--~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGL--SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCC--SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCc--CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 457888888877 34565543 68999999999999888899999999999999999999888889999999999999
Q ss_pred ccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCcccc-chhccCCCCCCEEEcccCcCcc
Q 012103 243 YNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEV-PAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 243 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
++|.+++..+..+..+++|++|++++|.+....+ .+..+++|++|++++|...+.+ +..+..+++|++|++++|.+++
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999997777779999999999999999997666 7889999999999995444444 4568899999999999999984
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccC
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWG 400 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 400 (471)
+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..+..
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 45 4788899999999999999888999999999999999999999988999999999999999999999777777889
Q ss_pred CCCCCEeecccCcccc
Q 012103 401 LPEVNIIDIALNQIEG 416 (471)
Q Consensus 401 ~~~L~~L~ls~n~~~~ 416 (471)
+++|+.|++++|++..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 9999999999998764
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=8.1e-31 Score=269.96 Aligned_cols=394 Identities=14% Similarity=0.104 Sum_probs=239.1
Q ss_pred CCEEEEEcCCCCCccccC--------------cccccCCCCCcEEeCCCCCCCcccccccc-CCCCCCEEeCCCC-cCCc
Q 012103 65 SFVQEIELSNRNLKGTLP--------------FDSICQLQALHKLSLGFNSLYGEISKDLN-NCVKLQYLDLGNN-VFSG 128 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~--------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~ 128 (471)
.++++++++++.....+. ......+++|++|++++|.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 457777777765322211 01123577888888888887766665554 5788888888887 4443
Q ss_pred c-CC-CCCCCCCCCEEEccCCCCcccCCccc----ccCCCCCcEEEccCCC--CCCCCCCccccCCCCCCEEEcccccCc
Q 012103 129 S-FP-EISSLNELQHLYLNLSGFSGVFPWMS----LGNMTNLVSLSVGDNP--FDPTPFPDQVVKLNKLNWLYLTNCSID 200 (471)
Q Consensus 129 ~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~--~~~~~~~~~l~~l~~L~~L~l~~n~l~ 200 (471)
. ++ ...++++|++|++++|.+++..+ .. ...+++|++|++++|. +....+......+++|++|++++|...
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSG-HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCG-GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcch-HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 2 22 33467888888888887665432 22 2366788888888775 211112222345688888888887433
Q ss_pred ccCCccccCCCCCcEEEcccCc-------CCCcCCccccCCCCCCeE-eeccccccccCCccccCCCCCCEEeCCCCcCc
Q 012103 201 GQIPVEIGNLTELINLELSDNN-------ISGEIPSEIGNLVKLWRL-ELYNNQLSGKLPVGLRNLTNLANFDASTNFLE 272 (471)
Q Consensus 201 ~~~~~~l~~l~~L~~L~L~~n~-------l~~~~p~~~~~l~~L~~L-~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 272 (471)
..++..+..+++|+.|+++.+. +. .++..+.++++|+.+ .+..... +.++..+..+++|++|++++|.+.
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCC
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCC
Confidence 3466667777888888865543 22 233356667777776 3332221 234444456777888888877755
Q ss_pred cccc--cCCCCCCCCEEEccCCcCccc-cchhccCCCCCCEEEccc---------CcCcccCchhh-cCCCCCCEEeccC
Q 012103 273 GDLS--EVRFLTNLVTLQLFKNQFSGE-VPAELGKFKKLVNLSLYT---------NKLTGALPQEL-GSWAEFDFIDVSE 339 (471)
Q Consensus 273 ~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~L~~---------n~l~~~~~~~~-~~~~~L~~L~L~~ 339 (471)
+... .+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+ ..+++|++|.+..
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 4322 3556777888888777 3322 222333467778877733 34443322222 2367777777777
Q ss_pred CcccccCchhhc-CCCCCceeecc--C----Ccccc-----ccchhhhcCCCCcEEEccCCcCcccccccccC-CCCCCE
Q 012103 340 NLLTGPIPPDMC-KRGTMRDLLML--Q----NKFTG-----EIPATYANCLTLQRFRVSNNSLKGTVPAGIWG-LPEVNI 406 (471)
Q Consensus 340 n~l~~~~p~~~~-~~~~L~~L~l~--~----n~~~~-----~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~ 406 (471)
+.+++..+..+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|+.
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~ 460 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM 460 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence 777655444443 46777888777 3 34441 1223356677788888766 555544444443 677788
Q ss_pred eecccCccccccchhh-hccCCCCeeeCCCCcCcccchh-hhhcCCCCCEEeccCCcCc
Q 012103 407 IDIALNQIEGPITKDI-ENAKALNLLFAEYNRLSGELPE-EISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 407 L~ls~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~~s 463 (471)
|++++|.+++..+..+ .++++|+.|++++|.+++..+. .+..+++|+.|++++|+++
T Consensus 461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 8888877766555444 5677788888888877654443 3344677888888887775
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.3e-26 Score=236.31 Aligned_cols=268 Identities=24% Similarity=0.311 Sum_probs=219.2
Q ss_pred CCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEE
Q 012103 138 ELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLE 217 (471)
Q Consensus 138 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 217 (471)
+++.|++++|.++.. | ..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~~l-p-~~l~--~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-P-DCLP--AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCSCC-C-SCCC--TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCcEEEecCCCcCcc-C-hhhC--CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 589999999999844 4 3343 89999999999984 4555 5789999999999998 4555 678999999
Q ss_pred cccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccc
Q 012103 218 LSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGE 297 (471)
Q Consensus 218 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 297 (471)
+++|.+++ +|. .+++|++|++++|.+++ +|.. +++|++|++++|.+++... .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-
Confidence 99999984 555 56889999999999984 5543 4899999999999886433 35789999999999984
Q ss_pred cchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcC
Q 012103 298 VPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377 (471)
Q Consensus 298 ~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 377 (471)
+| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 55 456889999999999984 5542 478999999999998 56643 4789999999999985 55 456
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCC
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 88999999999998 5666 5688999999999998 6788899999999999999999999888877653
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.6e-26 Score=234.18 Aligned_cols=270 Identities=21% Similarity=0.268 Sum_probs=227.0
Q ss_pred CCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEE
Q 012103 114 VKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLY 193 (471)
Q Consensus 114 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 193 (471)
.+++.|++++|.++..+..+. ++|++|++++|.++.. | . .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~l-p-~---~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSL-P-A---LPPELRTLEVSGNQLT--SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCC-C-C---CCTTCCEEEECSCCCS--CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCC-C-C---cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEE
Confidence 358999999999996555555 8999999999999854 3 2 5799999999999984 4555 679999999
Q ss_pred cccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCcc
Q 012103 194 LTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEG 273 (471)
Q Consensus 194 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 273 (471)
+++|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. ..++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99999985 444 56899999999999984 6654 4899999999999984 443 35789999999999986
Q ss_pred ccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCC
Q 012103 274 DLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKR 353 (471)
Q Consensus 274 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~ 353 (471)
.. ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|.++ .+| ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~-~lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC-cCC---CCC
Confidence 44 557999999999999984 4543 478999999999998 45542 478999999999998 466 456
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
++|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..++.
T Consensus 241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 89999999999999 4555 6789999999999999 88999999999999999999999999988877653
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.9e-29 Score=235.20 Aligned_cols=254 Identities=17% Similarity=0.193 Sum_probs=149.8
Q ss_pred ccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCc-ccCCcccc-------CCCCCcEEEcccCcCCCcCCc
Q 012103 158 LGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSID-GQIPVEIG-------NLTELINLELSDNNISGEIPS 229 (471)
Q Consensus 158 ~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~L~~n~l~~~~p~ 229 (471)
++..++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. .+++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455666666666665 345444332 555666666552 33444433 455666666666666555555
Q ss_pred cc--cCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCC
Q 012103 230 EI--GNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKK 307 (471)
Q Consensus 230 ~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 307 (471)
.+ ..+++|++|++++|.+++. |..+..+. ...+++|++|++++|.+++..+..+..+++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~------------------~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQ------------------QWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHH------------------TTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHH------------------HhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 44 5555555555555555543 44443330 001255666666666665555556666666
Q ss_pred CCEEEcccCcCccc--Cchhh--cCCCCCCEEeccCCcccc--cCch-hhcCCCCCceeeccCCccccccc-hhhhcCCC
Q 012103 308 LVNLSLYTNKLTGA--LPQEL--GSWAEFDFIDVSENLLTG--PIPP-DMCKRGTMRDLLMLQNKFTGEIP-ATYANCLT 379 (471)
Q Consensus 308 L~~L~L~~n~l~~~--~~~~~--~~~~~L~~L~L~~n~l~~--~~p~-~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~ 379 (471)
|++|++++|++.+. .+..+ ..+++|++|++++|.+++ .++. .+..+++|+.|++++|++++..| ..+..+++
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 66666666665543 22233 556666666666666652 2222 22455677777777777766553 34455677
Q ss_pred CcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 788888888777 6666665 6788888888888765 44 7777888888888887764
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.1e-28 Score=233.36 Aligned_cols=237 Identities=19% Similarity=0.168 Sum_probs=113.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCC
Q 012103 159 GNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238 (471)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 238 (471)
..+++|++|++++|.+. ...|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred ccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcC
Confidence 34445555555555552 2223445555555555555555543322 4455555555555555442 11 224555
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhc-cCCCCCCEEEcccC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAEL-GKFKKLVNLSLYTN 316 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~L~~n 316 (471)
+|++++|.+++..+. .+++|++|++++|.+.+..+ .+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 555555555433222 23445555555555554433 44445555555555555554433333 23455555555555
Q ss_pred cCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCc-cccc
Q 012103 317 KLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLK-GTVP 395 (471)
Q Consensus 317 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~ 395 (471)
.+++. +. ...+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+. +.+|
T Consensus 180 ~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 55432 21 123445555555555554 23333444555555555555555 34444555555555555555555 4444
Q ss_pred ccccCCCCCCEeecc
Q 012103 396 AGIWGLPEVNIIDIA 410 (471)
Q Consensus 396 ~~~~~~~~L~~L~ls 410 (471)
..+..+++|+.++++
T Consensus 256 ~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhccccceEEECC
Confidence 445555555555554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.2e-26 Score=209.38 Aligned_cols=215 Identities=23% Similarity=0.274 Sum_probs=144.8
Q ss_pred CCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCcc
Q 012103 50 NHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGS 129 (471)
Q Consensus 50 ~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 129 (471)
.++|.|.|+.|.- ...++.+++++++++ .+|.. + .+++++|++++|.+.+..+..|.++++|++|++++|.+++.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee
Confidence 5789999998875 345678999999998 67754 2 26789999999998877677888899999999999988876
Q ss_pred CC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCcccc
Q 012103 130 FP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIG 208 (471)
Q Consensus 130 ~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 208 (471)
++ .+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..+.
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 66 45778888888888888776655 566777777777777777632 2234455666666666666666644444455
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcC
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFL 271 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (471)
.+++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 666666666666666544444455555555555555555533333344444444444444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=238.54 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=145.8
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
+|++|++++|.+.+..|..|..+++|+.|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666677777777777777777765444 666777777777777766322 23667777777
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhc-CCCCCCEEeccCCcccccC
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELG-SWAEFDFIDVSENLLTGPI 346 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~ 346 (471)
+|.+.+..+ ..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 776665443 2345666666666666666566666666666666666666665555554 566666666666666533
Q ss_pred chhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc-cccchhhhcc
Q 012103 347 PPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE-GPITKDIENA 425 (471)
Q Consensus 347 p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~-~~~~~~~~~l 425 (471)
|. ...+++|+.|++++|.+++. |..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 22 22356666666666666643 333556666666666666666 35555666666666666666665 4455555555
Q ss_pred CCCCeeeCC
Q 012103 426 KALNLLFAE 434 (471)
Q Consensus 426 ~~L~~L~l~ 434 (471)
+.|+.++++
T Consensus 262 ~~L~~l~~~ 270 (487)
T 3oja_A 262 QRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHH
T ss_pred CCCcEEecc
Confidence 555555553
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=3.4e-29 Score=257.90 Aligned_cols=392 Identities=14% Similarity=0.083 Sum_probs=282.9
Q ss_pred CCEEEEEcCCCCCccccCccccc-CCCCCcEEeCCCC-CCCcc-ccccccCCCCCCEEeCCCCcCCccCC-----CCCCC
Q 012103 65 SFVQEIELSNRNLKGTLPFDSIC-QLQALHKLSLGFN-SLYGE-ISKDLNNCVKLQYLDLGNNVFSGSFP-----EISSL 136 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-----~l~~l 136 (471)
..+++|+|+++.+.+..+.. +. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+ ....+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLEL-IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHH-HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHHH-HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46899999999887655444 43 6899999999999 45432 44555689999999999999776432 23478
Q ss_pred CCCCEEEccCCC--CcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccccc-------CcccCCccc
Q 012103 137 NELQHLYLNLSG--FSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCS-------IDGQIPVEI 207 (471)
Q Consensus 137 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~l 207 (471)
++|++|++++|. +........+.++++|++|++++|.. ...++..+..+++|++|+++.+. +. .++..+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l 261 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVAL 261 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHH
Confidence 899999999987 22111102235579999999999843 22367778889999999976553 33 244577
Q ss_pred cCCCCCcEE-EcccCcCCCcCCccccCCCCCCeEeeccccccccC-CccccCCCCCCEEeCCCCcCcc-ccc-cCCCCCC
Q 012103 208 GNLTELINL-ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKL-PVGLRNLTNLANFDASTNFLEG-DLS-EVRFLTN 283 (471)
Q Consensus 208 ~~l~~L~~L-~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~-~~~-~~~~~~~ 283 (471)
.++++|+.+ .+.+... +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.. .+. ....+++
T Consensus 262 ~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred hcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 899999999 4443322 245555667899999999999876433 233568899999999988 332 222 2334789
Q ss_pred CCEEEcc---------CCcCccccchhcc-CCCCCCEEEcccCcCcccCchhhc-CCCCCCEEecc--C----Ccccc--
Q 012103 284 LVTLQLF---------KNQFSGEVPAELG-KFKKLVNLSLYTNKLTGALPQELG-SWAEFDFIDVS--E----NLLTG-- 344 (471)
Q Consensus 284 L~~L~l~---------~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~L~--~----n~l~~-- 344 (471)
|++|+++ .+.+++.....+. .+++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 9999984 3456544333333 478999999999999876655554 58999999999 3 45541
Q ss_pred ---cCchhhcCCCCCceeeccCCccccccchhhhc-CCCCcEEEccCCcCcccccccc-cCCCCCCEeecccCccccccc
Q 012103 345 ---PIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN-CLTLQRFRVSNNSLKGTVPAGI-WGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 345 ---~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 2223366788999999987 677666666655 8999999999999986655444 678999999999999976544
Q ss_pred h-hhhccCCCCeeeCCCCcCcccchhhh-hcCCCCCEEeccCCcC
Q 012103 420 K-DIENAKALNLLFAEYNRLSGELPEEI-SKATSLVVIKLNNNQL 462 (471)
Q Consensus 420 ~-~~~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~l~~n~~ 462 (471)
. ....+++|+.|++++|+++......+ ..++.|+...+..+.-
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 4 44568999999999999976555555 5678887766666543
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=231.02 Aligned_cols=236 Identities=20% Similarity=0.194 Sum_probs=186.0
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3478899999998887777788888889999999888886554 7888888888888888875443 278888888
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhc-CCCCCceeeccCCcccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMC-KRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~~~~L~~L~l~~n~~~~ 368 (471)
++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888865543 357788888888888877777778888888888888888877777765 67888888888888886
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc-ccchhhhh
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS-GELPEEIS 447 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~ 447 (471)
..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 3357888888888888885 44457788888888888888885 6667778888888888888887 67777788
Q ss_pred cCCCCCEEecc
Q 012103 448 KATSLVVIKLN 458 (471)
Q Consensus 448 ~l~~L~~L~l~ 458 (471)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 88777777775
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=204.54 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=163.8
Q ss_pred EEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCc
Q 012103 215 NLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQ 293 (471)
Q Consensus 215 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~ 293 (471)
.++..+..+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+..+ .+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3455555555 4665443 468888888888886666677888888888888888876665 67778888888888888
Q ss_pred CccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-cCchhhcCCCCCceeeccCCccccccch
Q 012103 294 FSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-PIPPDMCKRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 294 l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~~~~L~~L~l~~n~~~~~~~~ 372 (471)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 887766777888888888888888876555567777888888888888765 3577777788888888888887766666
Q ss_pred hhhcCCCCc----EEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 373 TYANCLTLQ----RFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 373 ~~~~~~~L~----~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
.+..+++|+ +|++++|.+++..+. .....+|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666666665 777888887744333 3344477788888887776665666777777777777777775543
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.3e-25 Score=205.73 Aligned_cols=227 Identities=18% Similarity=0.209 Sum_probs=158.3
Q ss_pred CcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCC
Q 012103 213 LINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292 (471)
Q Consensus 213 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 292 (471)
+..+.+..+.+.+. .....+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ ++.+..+++|++|++++|
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTS
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCC
Confidence 33444555544432 234567778888888887763 2 246777888888888887765 346677777888888888
Q ss_pred cCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccch
Q 012103 293 QFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPA 372 (471)
Q Consensus 293 ~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~ 372 (471)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 77766666677777788888888877766555667777777777777777755555566777777777777777766666
Q ss_pred hhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCC
Q 012103 373 TYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATS 451 (471)
Q Consensus 373 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 451 (471)
.+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+. +++++.+++..|+++|.+|..++.++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 667777777777777777766666667777777777777776643 446677777777777777777766543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-24 Score=199.99 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=167.7
Q ss_pred EEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcC
Q 012103 192 LYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFL 271 (471)
Q Consensus 192 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 271 (471)
.+..+..+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 4555443 4688888888888866666788888888888888888866666788888888888888888
Q ss_pred ccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCccc-CchhhcCCCCCCEEeccCCcccccCchh
Q 012103 272 EGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGA-LPQELGSWAEFDFIDVSENLLTGPIPPD 349 (471)
Q Consensus 272 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 349 (471)
.+..+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 77665 677888888888888888866665677888888888888888753 5777888888888888888887665566
Q ss_pred hcCCCCCc----eeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 350 MCKRGTMR----DLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 350 ~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+..+++++ .|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 65555555 788888888855554443 347888888888888655556677888888888888887644
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.1e-23 Score=194.37 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=124.9
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 314 (471)
..++++++++.++ .+|..+. +++++|++++|.+.+..+ .+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777766 3454332 466777777776665554 56666677777777776664444445666667777777
Q ss_pred cCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccc
Q 012103 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTV 394 (471)
Q Consensus 315 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~ 394 (471)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66666544445566666666666666666544455566666666666666666544445666666666666666666444
Q ss_pred cccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 395 PAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 395 ~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 445566666666666666666555555566666666666666654
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1e-25 Score=219.11 Aligned_cols=248 Identities=19% Similarity=0.227 Sum_probs=134.0
Q ss_pred CCccccCCCCCcEEEcccCcCCCcCC----ccccCCCCCCeEeecccc---ccccCCccccCCCCCCEEeCCCCcCcccc
Q 012103 203 IPVEIGNLTELINLELSDNNISGEIP----SEIGNLVKLWRLELYNNQ---LSGKLPVGLRNLTNLANFDASTNFLEGDL 275 (471)
Q Consensus 203 ~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 275 (471)
++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|. +.+.+|..+.. ..
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~----------------l~ 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL----------------LL 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH----------------HH
Confidence 44555556666666666666654322 224455566666665542 22233322200 00
Q ss_pred ccCCCCCCCCEEEccCCcCcc----ccchhccCCCCCCEEEcccCcCcccCchh----hcCC---------CCCCEEecc
Q 012103 276 SEVRFLTNLVTLQLFKNQFSG----EVPAELGKFKKLVNLSLYTNKLTGALPQE----LGSW---------AEFDFIDVS 338 (471)
Q Consensus 276 ~~~~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~L~~n~l~~~~~~~----~~~~---------~~L~~L~L~ 338 (471)
..+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+.. +..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 012344555555555555554 24445555556666666666654322222 2222 566666666
Q ss_pred CCccc-ccCc---hhhcCCCCCceeeccCCcccc-----ccchhhhcCCCCcEEEccCCcCc----ccccccccCCCCCC
Q 012103 339 ENLLT-GPIP---PDMCKRGTMRDLLMLQNKFTG-----EIPATYANCLTLQRFRVSNNSLK----GTVPAGIWGLPEVN 405 (471)
Q Consensus 339 ~n~l~-~~~p---~~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~L~~n~~~----~~~~~~~~~~~~L~ 405 (471)
+|.++ +.+| ..+..+++|+.|++++|+++. ..+..+..+++|+.|++++|.++ +.+|..+..+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 66665 2333 244455666666666666652 22225556666666666666664 34555666666666
Q ss_pred EeecccCccccc----cchhhhc--cCCCCeeeCCCCcCcc----cchhhh-hcCCCCCEEeccCCcCcccC
Q 012103 406 IIDIALNQIEGP----ITKDIEN--AKALNLLFAEYNRLSG----ELPEEI-SKATSLVVIKLNNNQLTGKI 466 (471)
Q Consensus 406 ~L~ls~n~~~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~l-~~l~~L~~L~l~~n~~sg~i 466 (471)
.|++++|++++. ++..+.. +++|+.|++++|++++ .+|..+ .++++|+.|++++|++++..
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666666654 3444432 6666777777776665 366665 44666777777777666544
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=8.8e-24 Score=196.65 Aligned_cols=201 Identities=18% Similarity=0.174 Sum_probs=104.7
Q ss_pred CCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEe
Q 012103 257 NLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFID 336 (471)
Q Consensus 257 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 336 (471)
+++++++++++++.++..++.+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ . ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence 3444444444444444322222 1445555555555554444455555555555555555543221 1 4455555555
Q ss_pred ccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 337 VSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 337 L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
+++|.++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 5555554 455555555555555555555554444555555555555555555554444444555555555555555554
Q ss_pred ccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCc
Q 012103 417 PITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 417 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~s 463 (471)
..+..+..+++|+.|++++|+++ .+|..+...++|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44444455555555555555555 45555555555555666555554
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=5.5e-25 Score=209.88 Aligned_cols=232 Identities=16% Similarity=0.144 Sum_probs=113.8
Q ss_pred CCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccc-cc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEE
Q 012103 235 VKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGD-LS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLS 312 (471)
Q Consensus 235 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 312 (471)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+ .+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444433222 22344444444444444332 22 344445555555555555544455555555555555
Q ss_pred cccC-cCccc-CchhhcCCCCCCEEeccCC-ccccc-CchhhcCCC-CCceeeccCC--ccc-cccchhhhcCCCCcEEE
Q 012103 313 LYTN-KLTGA-LPQELGSWAEFDFIDVSEN-LLTGP-IPPDMCKRG-TMRDLLMLQN--KFT-GEIPATYANCLTLQRFR 384 (471)
Q Consensus 313 L~~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 384 (471)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 5555 34432 3444455555555555555 55432 344455555 5566666555 333 23444555566666666
Q ss_pred ccCCc-CcccccccccCCCCCCEeecccCc-cccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 385 VSNNS-LKGTVPAGIWGLPEVNIIDIALNQ-IEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 385 L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
+++|. +++..+..+..+++|+.|++++|. +.......+.++++|+.|++++| +....-..+. ..+..|++++|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l 305 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHF 305 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccC
Confidence 66665 444445555555666666666663 22222224555666666666666 3322222221 1234444566666
Q ss_pred cccCCCCC
Q 012103 463 TGKIPASI 470 (471)
Q Consensus 463 sg~ip~~~ 470 (471)
+|..|..+
T Consensus 306 ~~~~~~~~ 313 (336)
T 2ast_B 306 TTIARPTI 313 (336)
T ss_dssp CCTTCSSC
T ss_pred ccccCCcc
Confidence 66666544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.2e-24 Score=198.00 Aligned_cols=210 Identities=21% Similarity=0.245 Sum_probs=142.3
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCC
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLV 285 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~ 285 (471)
...+++|+.|++++|.+. .+ ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 445667777777777765 22 246667777777777777764 2 356677777777777777766555 456677777
Q ss_pred EEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCc
Q 012103 286 TLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK 365 (471)
Q Consensus 286 ~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~ 365 (471)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777776655566677777777777777775555556667777777777777775555555667777777777777
Q ss_pred cccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 366 FTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 366 ~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
+++..+..+..+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|..++.+..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 7766666667777777777777766633 445677777777777777766665443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=3.1e-25 Score=213.64 Aligned_cols=253 Identities=18% Similarity=0.141 Sum_probs=143.3
Q ss_pred EEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCC----ccccCCC-CCcEEEcccCcCCCcCCccccCC-----C
Q 012103 166 SLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIP----VEIGNLT-ELINLELSDNNISGEIPSEIGNL-----V 235 (471)
Q Consensus 166 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~ 235 (471)
+++++.|.+ .+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPG-SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTT-CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccc-hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 355666666 33445555555567777777777775544 5566666 67777777777776555555553 6
Q ss_pred CCCeEeeccccccccCCccc----cCC-CCCCEEeCCCCcCccccc-----cCCC-CCCCCEEEccCCcCcccc----ch
Q 012103 236 KLWRLELYNNQLSGKLPVGL----RNL-TNLANFDASTNFLEGDLS-----EVRF-LTNLVTLQLFKNQFSGEV----PA 300 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~~~-----~~~~-~~~L~~L~l~~n~l~~~~----~~ 300 (471)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++... .+.. .++|++|++++|.+++.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 77777777777765544433 333 667777777776654433 1223 246666666666666432 23
Q ss_pred hccCCC-CCCEEEcccCcCcccCchh----hcCC-CCCCEEeccCCccccc----CchhhcC-CCCCceeeccCCccccc
Q 012103 301 ELGKFK-KLVNLSLYTNKLTGALPQE----LGSW-AEFDFIDVSENLLTGP----IPPDMCK-RGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 301 ~l~~~~-~L~~L~L~~n~l~~~~~~~----~~~~-~~L~~L~L~~n~l~~~----~p~~~~~-~~~L~~L~l~~n~~~~~ 369 (471)
.+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++. ++..+.. .++|+.|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 333443 6666666666666544432 2233 3666666666666532 3333433 34666666666666543
Q ss_pred cc----hhhhcCCCCcEEEccCCcCccc-------ccccccCCCCCCEeecccCccccccc
Q 012103 370 IP----ATYANCLTLQRFRVSNNSLKGT-------VPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 370 ~~----~~~~~~~~L~~L~L~~n~~~~~-------~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.+ ..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|++.+..+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 32 2234455666666666653321 22344555566666666666655433
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=3.4e-25 Score=213.38 Aligned_cols=280 Identities=18% Similarity=0.148 Sum_probs=201.9
Q ss_pred EEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCC----ccccCCC-CCCeEeeccccccccCCccccCC-----CC
Q 012103 191 WLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIP----SEIGNLV-KLWRLELYNNQLSGKLPVGLRNL-----TN 260 (471)
Q Consensus 191 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~ 260 (471)
++.++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888877777779999999999987666 6777888 89999999999987767666654 99
Q ss_pred CCEEeCCCCcCccccc-----cCCCC-CCCCEEEccCCcCccccchhc----cC-CCCCCEEEcccCcCcccC----chh
Q 012103 261 LANFDASTNFLEGDLS-----EVRFL-TNLVTLQLFKNQFSGEVPAEL----GK-FKKLVNLSLYTNKLTGAL----PQE 325 (471)
Q Consensus 261 L~~L~l~~n~~~~~~~-----~~~~~-~~L~~L~l~~n~l~~~~~~~l----~~-~~~L~~L~L~~n~l~~~~----~~~ 325 (471)
|++|++++|.+++..+ .+... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999986554 24444 899999999999987665443 33 369999999999998543 344
Q ss_pred hcCCC-CCCEEeccCCcccccCchhh----cCC-CCCceeeccCCccccc----cchhhhc-CCCCcEEEccCCcCcccc
Q 012103 326 LGSWA-EFDFIDVSENLLTGPIPPDM----CKR-GTMRDLLMLQNKFTGE----IPATYAN-CLTLQRFRVSNNSLKGTV 394 (471)
Q Consensus 326 ~~~~~-~L~~L~L~~n~l~~~~p~~~----~~~-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~L~L~~n~~~~~~ 394 (471)
+...+ +|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 89999999999987666544 344 5999999999999863 4555655 469999999999998653
Q ss_pred c----ccccCCCCCCEeecccCccccccc-------hhhhccCCCCeeeCCCCcCcccchhhhhc----------CCCC-
Q 012103 395 P----AGIWGLPEVNIIDIALNQIEGPIT-------KDIENAKALNLLFAEYNRLSGELPEEISK----------ATSL- 452 (471)
Q Consensus 395 ~----~~~~~~~~L~~L~ls~n~~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~~l~~----------l~~L- 452 (471)
+ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+..+..+.+ .+++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~~~~~~~~psll 321 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHHHHTCCCTTTC-
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHHCCCCcchHHHH
Confidence 3 345778899999999999654433 35567788999999999998765544422 2333
Q ss_pred --CEEeccCCcCc---ccCCCCC
Q 012103 453 --VVIKLNNNQLT---GKIPASI 470 (471)
Q Consensus 453 --~~L~l~~n~~s---g~ip~~~ 470 (471)
..+.+..|++. +.||+++
T Consensus 322 ~~~~~~~~~n~~~~~~~~iP~~l 344 (362)
T 3goz_A 322 NQCLIFAQKHQTNIEDLNIPDEL 344 (362)
T ss_dssp -----------------------
T ss_pred hhhhheeeccccCcchhhCcHHH
Confidence 33455666554 4566654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.8e-23 Score=190.24 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=109.7
Q ss_pred CCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEE
Q 012103 209 NLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQ 288 (471)
Q Consensus 209 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 288 (471)
+++++++++++++.++ .+|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+++..+ ...+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEE
Confidence 3444444444444444 2333222 344444444444444444444445555555555555443222 24455556666
Q ss_pred ccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcccc
Q 012103 289 LFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTG 368 (471)
Q Consensus 289 l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~ 368 (471)
+++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 6665555 445555555666666666666664444555666666666666666654433444556666666666666664
Q ss_pred ccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 369 EIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 369 ~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..+..|..+++|+.|++++|+++ .+|..+...+.|+.+++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44445556666666666666666 55666666666666666666654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.8e-25 Score=215.11 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=139.6
Q ss_pred CCCCccccCCCCCCEEEcccccCcccCC----ccccCCCCCcEEEcccCc---CCCcCCccc-------cCCCCCCeEee
Q 012103 177 TPFPDQVVKLNKLNWLYLTNCSIDGQIP----VEIGNLTELINLELSDNN---ISGEIPSEI-------GNLVKLWRLEL 242 (471)
Q Consensus 177 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~L~~n~---l~~~~p~~~-------~~l~~L~~L~l 242 (471)
..++..+..+++|++|++++|.+....+ ..+..+++|+.|++++|. +.+.+|..+ ..+++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 3456778889999999999999986533 447789999999999964 444556554 56677777777
Q ss_pred ccccccc----cCCccccCCCCCCEEeCCCCcCccccc-----cCCCC---------CCCCEEEccCCcCc-cccchhcc
Q 012103 243 YNNQLSG----KLPVGLRNLTNLANFDASTNFLEGDLS-----EVRFL---------TNLVTLQLFKNQFS-GEVPAELG 303 (471)
Q Consensus 243 ~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~---------~~L~~L~l~~n~l~-~~~~~~l~ 303 (471)
++|.+.+ .++..+..+++|++|++++|.+....+ .+..+ ++|++|++++|.++ +.++.
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--- 178 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--- 178 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH---
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH---
Confidence 7777765 345556666666666666666643221 11111 44555555555544 12221
Q ss_pred CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccc-----cCchhhcCCCCCceeeccCCccc----cccchhh
Q 012103 304 KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTG-----PIPPDMCKRGTMRDLLMLQNKFT----GEIPATY 374 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~p~~~~~~~~L~~L~l~~n~~~----~~~~~~~ 374 (471)
+...+..+++|++|++++|.++. .+|..+..+++|+.|++++|.++ ..++..+
T Consensus 179 ------------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 179 ------------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp ------------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred ------------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 00233344445555555554431 12224444555555555555553 3444455
Q ss_pred hcCCCCcEEEccCCcCccc----ccccc--cCCCCCCEeecccCcccc----ccchhh-hccCCCCeeeCCCCcCcccc
Q 012103 375 ANCLTLQRFRVSNNSLKGT----VPAGI--WGLPEVNIIDIALNQIEG----PITKDI-ENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~----~~~~~--~~~~~L~~L~ls~n~~~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 442 (471)
..+++|+.|++++|.+++. ++..+ ..+++|+.|++++|.+++ .+|..+ .++++|+.|++++|++++..
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5555555555555555533 33444 225556666666666655 345444 44566666666666665544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.2e-24 Score=205.71 Aligned_cols=233 Identities=13% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCCcEEEcccCcCCCcCCccccCCCCCCeEeecccccccc-CCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEE
Q 012103 211 TELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGK-LPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQ 288 (471)
Q Consensus 211 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~ 288 (471)
++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+ .+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555555443333 33455555555555555433 44445555566666666665554333 455566666666
Q ss_pred ccCC-cCccc-cchhccCCCCCCEEEcccC-cCccc-CchhhcCCC-CCCEEeccCC--ccc-ccCchhhcCCCCCceee
Q 012103 289 LFKN-QFSGE-VPAELGKFKKLVNLSLYTN-KLTGA-LPQELGSWA-EFDFIDVSEN--LLT-GPIPPDMCKRGTMRDLL 360 (471)
Q Consensus 289 l~~n-~l~~~-~~~~l~~~~~L~~L~L~~n-~l~~~-~~~~~~~~~-~L~~L~L~~n--~l~-~~~p~~~~~~~~L~~L~ 360 (471)
+++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 45542 4555666777777777777 66643 455566677 7777777777 344 35566666777788888
Q ss_pred ccCCc-cccccchhhhcCCCCcEEEccCCc-CcccccccccCCCCCCEeecccCccccccchhhhcc-CCCCeeeCCCCc
Q 012103 361 MLQNK-FTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENA-KALNLLFAEYNR 437 (471)
Q Consensus 361 l~~n~-~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l-~~L~~L~l~~n~ 437 (471)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++.. .+..+ ..+..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 87777 666666677777888888888874 33222235667788888888887 4432 23333 346667788888
Q ss_pred Ccccchhhhhc
Q 012103 438 LSGELPEEISK 448 (471)
Q Consensus 438 l~~~~p~~l~~ 448 (471)
+++..|..+++
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 88877776654
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.3e-22 Score=184.86 Aligned_cols=190 Identities=24% Similarity=0.274 Sum_probs=143.5
Q ss_pred CCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccC
Q 012103 51 HFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSF 130 (471)
Q Consensus 51 ~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 130 (471)
.|+.|.|..|.. ..++++++++.++ .+|.. +. ++++.|++++|.+.+..+..|.++++|++|++++|.+++..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 578999999953 3567999999998 77754 33 68999999999999888888999999999999999998877
Q ss_pred C-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccC
Q 012103 131 P-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGN 209 (471)
Q Consensus 131 ~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 209 (471)
+ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. ...+..+..+++|++|++++|.+++..+..+..
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPL-GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhHhccCCcCCEEECCCCcccccCh-hHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 7 67888888888888888887666 67777888888888888773 222334566777777777777777555556677
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSG 249 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 249 (471)
+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 7777777777777775555566666667777776666654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2.3e-23 Score=196.11 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=127.0
Q ss_pred CCCEEeCCCCcCccccc-cC--CCCCCCCEEEccCCcCccccc----hhccCCCCCCEEEcccCcCcccCchhhcCCCCC
Q 012103 260 NLANFDASTNFLEGDLS-EV--RFLTNLVTLQLFKNQFSGEVP----AELGKFKKLVNLSLYTNKLTGALPQELGSWAEF 332 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-~~--~~~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 332 (471)
+|++|++++|.+.+..+ .+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34555555554444433 22 445555555555555554333 223345666777777776665555666666677
Q ss_pred CEEeccCCccccc--Cc--hhhcCCCCCceeeccCCccccccch----hhhcCCCCcEEEccCCcCcccccccccCC---
Q 012103 333 DFIDVSENLLTGP--IP--PDMCKRGTMRDLLMLQNKFTGEIPA----TYANCLTLQRFRVSNNSLKGTVPAGIWGL--- 401 (471)
Q Consensus 333 ~~L~L~~n~l~~~--~p--~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~L~~n~~~~~~~~~~~~~--- 401 (471)
++|++++|++.+. ++ ..+..+++|+.|++++|+++. ++. .+..+++|++|++++|++++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777765432 21 122456677777777777752 222 24677788888888888887667666555
Q ss_pred CCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 402 PEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 402 ~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+|+.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 5565553 7888888888888853 33 5677888888888888874
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.5e-22 Score=183.05 Aligned_cols=180 Identities=14% Similarity=0.146 Sum_probs=140.1
Q ss_pred CCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccC
Q 012103 260 NLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSE 339 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 339 (471)
..++++++++.+...+..+. ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45678888888775544433 6788888888888877777788888888888888888876676777888888888888
Q ss_pred CcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 340 NLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 340 n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
|.+++..+..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88876555667778888888888888886666667778888888888888886555567788888888888888887777
Q ss_pred hhhhccCCCCeeeCCCCcCccc
Q 012103 420 KDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 420 ~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
..+..+++|+.|++++|++.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 7777888888888888888765
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=191.30 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=123.9
Q ss_pred CCCeEeeccccccccCCccc--cCCCCCCEEeCCCCcCccccc-----cCCCCCCCCEEEccCCcCccccchhccCCCCC
Q 012103 236 KLWRLELYNNQLSGKLPVGL--RNLTNLANFDASTNFLEGDLS-----EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKL 308 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 308 (471)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444444444333 444444444444444443211 22345666667777776666666666667777
Q ss_pred CEEEcccCcCccc--Cc--hhhcCCCCCCEEeccCCcccccCch----hhcCCCCCceeeccCCccccccchhhhcC---
Q 012103 309 VNLSLYTNKLTGA--LP--QELGSWAEFDFIDVSENLLTGPIPP----DMCKRGTMRDLLMLQNKFTGEIPATYANC--- 377 (471)
Q Consensus 309 ~~L~L~~n~l~~~--~~--~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--- 377 (471)
++|++++|++.+. ++ ..+..+++|++|++++|.++ .++. .+..+++|+.|++++|++.+..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 7777777766542 11 12356677777777777775 2332 23556777777777777776666666555
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 58888888888888 6676654 6888888888888864 32 5677888888888888763
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.6e-22 Score=183.00 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=146.7
Q ss_pred CCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCc-CccccchhccCCCCCCEEEccc-CcCcccCchhhcCCCCCCEEe
Q 012103 260 NLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQ-FSGEVPAELGKFKKLVNLSLYT-NKLTGALPQELGSWAEFDFID 336 (471)
Q Consensus 260 ~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~ 336 (471)
+|++|++++|.+++..+ .+..+++|++|++++|. +++..+..+..+++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555 56667777777777775 6655555677777888888877 777755556677778888888
Q ss_pred ccCCcccccCchhhcCCCCCc---eeeccCC-ccccccchhhhcCCCCc-EEEccCCcCcccccccccCCCCCCEeeccc
Q 012103 337 VSENLLTGPIPPDMCKRGTMR---DLLMLQN-KFTGEIPATYANCLTLQ-RFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411 (471)
Q Consensus 337 L~~n~l~~~~p~~~~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~ 411 (471)
+++|.+++ +|. +..+++|+ .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 88888774 665 66677777 8888888 88766666788888999 9999999888 5655443447899999999
Q ss_pred Cc-cccccchhhhcc-CCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 412 NQ-IEGPITKDIENA-KALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 412 n~-~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
|+ +++..+..+.++ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 95 887667778888 89999999999998 45544 56788999988763
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=4e-22 Score=187.25 Aligned_cols=207 Identities=17% Similarity=0.315 Sum_probs=137.6
Q ss_pred EcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCcc
Q 012103 217 ELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSG 296 (471)
Q Consensus 217 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~ 296 (471)
.+..+.+.+.+ ....+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~ 99 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN 99 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC
Confidence 34444444322 23456778888888887763 44 46777788888888887775554 6777777777777777764
Q ss_pred ccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhc
Q 012103 297 EVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYAN 376 (471)
Q Consensus 297 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 376 (471)
++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..
T Consensus 100 -~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~ 171 (308)
T 1h6u_A 100 -VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP--LAN 171 (308)
T ss_dssp -CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred -ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh--hcC
Confidence 23 46677777777777777764 332 6677777777777777763 332 6667777777777777764332 667
Q ss_pred CCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 377 CLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 377 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777777777764332 5666777777777777765442 6667777777777777763
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.5e-22 Score=186.94 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=170.0
Q ss_pred ccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCE
Q 012103 207 IGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVT 286 (471)
Q Consensus 207 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~ 286 (471)
...+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. +.+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCE
Confidence 4567899999999999984 55 588899999999999999854 44 89999999999999998864 57888999999
Q ss_pred EEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCcc
Q 012103 287 LQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKF 366 (471)
Q Consensus 287 L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~ 366 (471)
|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 99999999864 43 8899999999999999985433 7889999999999999984 554 88899999999999999
Q ss_pred ccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 367 TGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 367 ~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++.
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 86543 889999999999999999554 388999999999999999863
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=7.4e-22 Score=178.60 Aligned_cols=196 Identities=17% Similarity=0.132 Sum_probs=136.4
Q ss_pred CCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc-CCccCC-CCCCCCCCCEEEccC-CCCcccCCcccccCCCCCcE
Q 012103 90 QALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV-FSGSFP-EISSLNELQHLYLNL-SGFSGVFPWMSLGNMTNLVS 166 (471)
Q Consensus 90 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~ 166 (471)
++|++|++++|.+++..+..|.++++|++|++++|. +++..+ .+.++++|++|++++ |.+++..+ ..+.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCE
Confidence 378888888888887666678888888888888886 777666 677888888888887 88877666 67778888888
Q ss_pred EEccCCCCCCCCCCccccCCCCCC---EEEcccc-cCcccCCccccCCCCCc-EEEcccCcCCCcCCccccCCCCCCeEe
Q 012103 167 LSVGDNPFDPTPFPDQVVKLNKLN---WLYLTNC-SIDGQIPVEIGNLTELI-NLELSDNNISGEIPSEIGNLVKLWRLE 241 (471)
Q Consensus 167 L~l~~n~~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~ 241 (471)
|++++|.+.. +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.++ .+|.......+|++|+
T Consensus 110 L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185 (239)
T ss_dssp EEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred EeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence 8888888733 454 66677776 7788777 77765555677777777 7777777776 4444333336677777
Q ss_pred ecccc-ccccCCccccCC-CCCCEEeCCCCcCccccccCCCCCCCCEEEccCC
Q 012103 242 LYNNQ-LSGKLPVGLRNL-TNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKN 292 (471)
Q Consensus 242 l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 292 (471)
+++|+ +++..+..+..+ ++|++|++++|.+++..+. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 77773 664445555666 6666666666666533322 3455555555543
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=4.9e-21 Score=169.27 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=99.7
Q ss_pred CCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeec
Q 012103 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361 (471)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l 361 (471)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555444444555556666666666655433334455566666666666665333334455666666666
Q ss_pred cCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 362 LQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 362 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666665444455666666666666666664444445666666666666665553 234566666666666666
Q ss_pred chhhhhcCCCCCEEeccCCcCcccCCC
Q 012103 442 LPEEISKATSLVVIKLNNNQLTGKIPA 468 (471)
Q Consensus 442 ~p~~l~~l~~L~~L~l~~n~~sg~ip~ 468 (471)
+|..++.++. ++..|...|..+.
T Consensus 181 ip~~~~~l~~----~~~~C~~~~~~~~ 203 (208)
T 2o6s_A 181 VRNSAGSVAP----DSAKCSGSGKPVR 203 (208)
T ss_dssp BBCTTSSBCT----TCSBBTTTCCBGG
T ss_pred eeccCccccC----CccccccCCCcce
Confidence 6666665543 3444444444433
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=4.7e-21 Score=169.42 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=153.2
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56777777777 455443 368999999999999766667889999999999999998555556788999999999999
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchh
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPE 444 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 444 (471)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9997777778999999999999999997666678999999999999999998777778999999999999998875
Q ss_pred hhhcCCCCCEEeccCCcCcccCCCCCC
Q 012103 445 EISKATSLVVIKLNNNQLTGKIPASIY 471 (471)
Q Consensus 445 ~l~~l~~L~~L~l~~n~~sg~ip~~~~ 471 (471)
.+++|+.|++++|+++|.||++++
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCc
Confidence 456799999999999999998874
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=7e-21 Score=191.79 Aligned_cols=188 Identities=27% Similarity=0.344 Sum_probs=157.6
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT 315 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 315 (471)
++++|++++|.+++ +|..+ .++|++|++++|.++. ++ ..+++|++|++++|.+++ +|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999999986 66655 3789999999999984 44 567999999999999996 666 554 899999999
Q ss_pred CcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc
Q 012103 316 NKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP 395 (471)
Q Consensus 316 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 395 (471)
|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|. +. ++|+.|++++|+++ .+|
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 99986 665 67899999999999985 776 57899999999999986 666 55 89999999999999 777
Q ss_pred ccccCCCCC-------CEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCC
Q 012103 396 AGIWGLPEV-------NIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 396 ~~~~~~~~L-------~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 7 554 67 99999999998 4788888899999999999999999999888753
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.1e-20 Score=188.26 Aligned_cols=199 Identities=19% Similarity=0.287 Sum_probs=138.8
Q ss_pred CCCCCCCCCCc-----eeece-EeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCC
Q 012103 43 FSSWVSNNHFC-----NFTGI-TCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKL 116 (471)
Q Consensus 43 ~~~w~~~~~~c-----~~~gv-~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 116 (471)
+..|..+..+| .|.++ .|. ..+++.|+++++++++ +|.. + +++|++|++++|.++ .+| ..+++|
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 34565566667 69998 786 3579999999999985 7765 3 378999999999998 566 457899
Q ss_pred CEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEccc
Q 012103 117 QYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTN 196 (471)
Q Consensus 117 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 196 (471)
++|++++|.+++.+. +.+ +|++|++++|.+++ +| . .+++|++|++++|.++. +|. .+++|++|++++
T Consensus 103 ~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp-~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 103 EYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LP-E---LPALLEYINADNNQLTM--LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CC-C---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCS
T ss_pred CEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CC-C---cCccccEEeCCCCccCc--CCC---cCCCcCEEECCC
Confidence 999999999988544 544 88899999888887 44 2 57888888888888743 454 467788888888
Q ss_pred ccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCC-------CeEeeccccccccCCccccCCCCCCEEeCCCC
Q 012103 197 CSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKL-------WRLELYNNQLSGKLPVGLRNLTNLANFDASTN 269 (471)
Q Consensus 197 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 269 (471)
|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| ++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 88775 555 54 77888888887777 5555 433 44 55555555555 34444444555555555555
Q ss_pred cCcc
Q 012103 270 FLEG 273 (471)
Q Consensus 270 ~~~~ 273 (471)
.+++
T Consensus 241 ~l~~ 244 (571)
T 3cvr_A 241 PLSS 244 (571)
T ss_dssp SCCH
T ss_pred cCCC
Confidence 4444
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=2.9e-20 Score=178.01 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=175.6
Q ss_pred CEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCC-ccccCCCCCCE-EeCC
Q 012103 190 NWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLP-VGLRNLTNLAN-FDAS 267 (471)
Q Consensus 190 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~ 267 (471)
+.++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|.+.+.++ ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 677665 3589999999999985445578899999999999999866554 45778888776 5556
Q ss_pred CCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc-CcCcccCchhhcCC-CCCCEEeccCCcccc
Q 012103 268 TNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT-NKLTGALPQELGSW-AEFDFIDVSENLLTG 344 (471)
Q Consensus 268 ~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~ 344 (471)
+|++....+ .+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 688887666 778889999999999998866666666667788888866 45654333444444 36888999999987
Q ss_pred cCchhhcCCCCCceeeccC-CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhh
Q 012103 345 PIPPDMCKRGTMRDLLMLQ-NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIE 423 (471)
Q Consensus 345 ~~p~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~ 423 (471)
.+|.......+++.+++++ |.++...+..|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+| .+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-Cch
Confidence 6666666677888888875 4555433456788899999999999988 45542 24456666655554444566 477
Q ss_pred ccCCCCeeeCCCCc
Q 012103 424 NAKALNLLFAEYNR 437 (471)
Q Consensus 424 ~l~~L~~L~l~~n~ 437 (471)
++++|+.+++.++.
T Consensus 244 ~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 244 KLVALMEASLTYPS 257 (350)
T ss_dssp TCCSCCEEECSCHH
T ss_pred hCcChhhCcCCCCc
Confidence 88888888887653
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.9e-19 Score=170.98 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=58.2
Q ss_pred cEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcE-EEcc
Q 012103 93 HKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVS-LSVG 170 (471)
Q Consensus 93 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~ 170 (471)
++++.++++++ .+|..+ .+++++|+|++|+++..++ .+.++++|++|++++|.+.+.++...|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555554 344443 2456666666666665554 45566666666666665554444344555555443 3333
Q ss_pred CCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEc
Q 012103 171 DNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLEL 218 (471)
Q Consensus 171 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 218 (471)
.|++. ...|..+..+++|++|++++|.+....+..+....++..+++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 34441 111334444445555555555444333333333334444444
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.6e-19 Score=158.29 Aligned_cols=165 Identities=20% Similarity=0.209 Sum_probs=134.5
Q ss_pred CCCCCCCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCC
Q 012103 43 FSSWVSNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLG 122 (471)
Q Consensus 43 ~~~w~~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 122 (471)
...|......|.|.+|.|.. +.+. .+|.. + .++|++|++++|.+++..|..|.++++|++|+++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRS------------KRHA-SVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp --CCCCTTCEEETTEEECTT------------SCCS-SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hhccCCCCCEEeCCEeEccC------------CCcC-ccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence 34566678889999999974 3343 56643 2 3889999999999998888899999999999999
Q ss_pred CCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcc
Q 012103 123 NNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDG 201 (471)
Q Consensus 123 ~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 201 (471)
+|.+++.++ .+.++++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCc
Confidence 999987776 67889999999999999987766 67888999999999999884 567788888888888888888886
Q ss_pred cCCccccCCCCCcEEEcccCcCCCc
Q 012103 202 QIPVEIGNLTELINLELSDNNISGE 226 (471)
Q Consensus 202 ~~~~~l~~l~~L~~L~L~~n~l~~~ 226 (471)
..+..+..+++|+.|++++|.+...
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCCccCC
Confidence 6666778888888888888887644
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=159.61 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=108.8
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc-hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP-QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47777777777 4555443 356777777777776544 3466777777777777777755555677777777777777
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 7777666666777777777777777777666667777777777777777777766777777777777777777776543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=4.6e-19 Score=164.89 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=138.5
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
.+.+..+.+.+.. .+..+++|+.|++++|.+... +.+..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 3344444444322 245678888999988888744 456778888888888888885444 77888888888888888
Q ss_pred cccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 398 (471)
++ ++ .+..+++|++|++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +
T Consensus 103 ~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 103 KD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 74 33 37788888888888888874 3 3577788888888888888754 567778888888888888885444 7
Q ss_pred cCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
..+++|+.|++++|++++. + .+..+++|+.|++++|++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 7788888888888888753 3 37778888888888888764
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=170.01 Aligned_cols=176 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc-CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCC
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG-KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 340 (471)
+.++++++.+...+..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46677777666543332 24567777777777765555555 6677777777777777555556666777777777777
Q ss_pred cccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc---cCCCCCCEeecccCccccc
Q 012103 341 LLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI---WGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 341 ~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L~ls~n~~~~~ 417 (471)
.+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 7765444456666677777777777766666666666777777777777663222223 3466666667776666655
Q ss_pred cchhhhccCC--CCeeeCCCCcCc
Q 012103 418 ITKDIENAKA--LNLLFAEYNRLS 439 (471)
Q Consensus 418 ~~~~~~~l~~--L~~L~l~~n~l~ 439 (471)
.+..+..++. ++.|++++|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 5555666655 356666666665
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6.2e-19 Score=156.96 Aligned_cols=152 Identities=15% Similarity=0.244 Sum_probs=107.3
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56777777776 4555443 56777777777777655556777777777777777777666677777777777777777
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+++...+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777555555667777777777777777666666777777777777777777666666777777777777777665
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.5e-18 Score=155.48 Aligned_cols=156 Identities=18% Similarity=0.148 Sum_probs=119.0
Q ss_pred CCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeecc
Q 012103 283 NLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLML 362 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~ 362 (471)
+.+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3567888888777 5565443 678888888888887777777888888888888888864434456777888888888
Q ss_pred CCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccc
Q 012103 363 QNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 363 ~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88888666666777888888888888887 67777778888888888888888766667777888888888888877544
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.2e-19 Score=179.11 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=153.7
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccC
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFK 291 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 291 (471)
.+..+.+..+.+.+..+ +..+..|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 34455666666664433 4678889999999999874 44 58889999999999999887655 77889999999999
Q ss_pred CcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccc
Q 012103 292 NQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIP 371 (471)
Q Consensus 292 n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~ 371 (471)
|.+.+ ++ .+..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.+..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99884 33 67888999999999999885 3 3578889999999999998853 567888899999999999887655
Q ss_pred hhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 372 ATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 372 ~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++.+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred --hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 8888999999999999985 44 5788899999999999887653
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.3e-18 Score=152.12 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=104.9
Q ss_pred cCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcE
Q 012103 303 GKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQR 382 (471)
Q Consensus 303 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 382 (471)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 33456666666666665 344 4566666777777766553 2235666777777777777777666667777777777
Q ss_pred EEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 383 FRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 383 L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|++++|++++..|..+..+++|++|++++|++.+.+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|+|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 7777777776667777777788888888877223344 57778888888888888874 44 677788888888888887
Q ss_pred cc
Q 012103 463 TG 464 (471)
Q Consensus 463 sg 464 (471)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.1e-18 Score=160.36 Aligned_cols=171 Identities=22% Similarity=0.302 Sum_probs=93.2
Q ss_pred cCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEE
Q 012103 208 GNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTL 287 (471)
Q Consensus 208 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 287 (471)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++.+..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGGGTTCTTCCEE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 345666666666666653 33 35566666666666666664322 5566666666666666554 2345555666666
Q ss_pred EccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccc
Q 012103 288 QLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT 367 (471)
Q Consensus 288 ~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~ 367 (471)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..| +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666655532 2345555555666655555532 344555555555555555553222 445555555555555555
Q ss_pred cccchhhhcCCCCcEEEccCCcCc
Q 012103 368 GEIPATYANCLTLQRFRVSNNSLK 391 (471)
Q Consensus 368 ~~~~~~~~~~~~L~~L~L~~n~~~ 391 (471)
+ ++ .+..+++|+.|++++|++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 3 22 2455555555555555554
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=152.84 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=133.2
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccc-hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCC
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVP-AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSEN 340 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 340 (471)
+.+++++|.++..+..+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 57899999888654433 3567899999999987644 45788899999999999999777778889999999999999
Q ss_pred cccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 341 LLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 341 ~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
.+++..+..+..+++|+.|++++|++++..|..|..+++|+.|++++|++++..|..+..+++|+.|++++|++....+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9987777778889999999999999998888889999999999999999998778889999999999999999886543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.1e-18 Score=152.43 Aligned_cols=153 Identities=15% Similarity=0.156 Sum_probs=133.2
Q ss_pred CEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCc
Q 012103 262 ANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENL 341 (471)
Q Consensus 262 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 341 (471)
+.++++++.++..+..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888888876554443 789999999999997777788999999999999999998888899999999999999999
Q ss_pred ccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 342 LTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 342 l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
+++..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 984444456789999999999999998888899999999999999999997777778899999999999999875
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4e-18 Score=173.58 Aligned_cols=190 Identities=21% Similarity=0.269 Sum_probs=160.1
Q ss_pred CCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCC
Q 012103 189 LNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAST 268 (471)
Q Consensus 189 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 268 (471)
+..+.+..+.+.... .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 444455556665433 35678899999999999884 44 58899999999999999986544 88999999999999
Q ss_pred CcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCch
Q 012103 269 NFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPP 348 (471)
Q Consensus 269 n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 348 (471)
|.+.+ ++.+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CTTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC-ChhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 99985 4578899999999999999985 3 4588899999999999999864 568899999999999999986555
Q ss_pred hhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 349 DMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 349 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88899999999999999964 4688999999999999999854
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=4.4e-20 Score=192.68 Aligned_cols=260 Identities=19% Similarity=0.193 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCC-CCCCCceeeceEeCCCCCCEEEEEcCCCCCccccCcccccCCCCCcEEeCC
Q 012103 20 INSDELQILLNLKTSLKDSKSSIFSSWV-SNNHFCNFTGITCNSDSSFVQEIELSNRNLKGTLPFDSICQLQALHKLSLG 98 (471)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~~c~~~gv~c~~~~~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~ 98 (471)
..+.+++++++++.+...+.+..-..|. .....+.|.++.+. ..+++.++|.++.+.. .+.. +.....|+.+.+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~-~l~~l~Ls~~~i~ 204 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQA-LLQHKKLSQYSID 204 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhh-HhhcCccCccccc
Confidence 3456889999999887554445555674 34455778888776 4779999999988873 3433 3233333333322
Q ss_pred -----CCCCCccccccccCCCCCCEEeCCCCcCCccCCCCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCC
Q 012103 99 -----FNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFPEISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNP 173 (471)
Q Consensus 99 -----~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 173 (471)
.|.+. ..+..+..++.|+.|+|++|.+...++.+.++++|++|+|++|.++ .+| ..+.++++|++|+|++|.
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELP-AEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCC-GGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccC-hhhhCCCCCCEEeCcCCc
Confidence 22232 3467789999999999999999966557779999999999999999 666 788999999999999999
Q ss_pred CCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCC-CCeEeeccccccccCC
Q 012103 174 FDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVK-LWRLELYNNQLSGKLP 252 (471)
Q Consensus 174 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~ 252 (471)
++ .+|..+..+++|++|++++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..... ...+++.+|.+++.+|
T Consensus 282 l~--~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 282 LT--SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CS--SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CC--ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 94 67999999999999999999998 78888999999999999999999888887765422 2347889999988777
Q ss_pred ccccCCCCCCEEeCCCC--------cCccccc-cCCCCCCCCEEEccCCcCc
Q 012103 253 VGLRNLTNLANFDASTN--------FLEGDLS-EVRFLTNLVTLQLFKNQFS 295 (471)
Q Consensus 253 ~~l~~l~~L~~L~l~~n--------~~~~~~~-~~~~~~~L~~L~l~~n~l~ 295 (471)
.. |+.|+++.| .+.+..+ .+..+..+....+++|.+.
T Consensus 359 ~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 HE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CC-----------------------------------------------CCC
T ss_pred cc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 54 455566655 1222211 2334445555666666654
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=6.5e-18 Score=162.27 Aligned_cols=177 Identities=20% Similarity=0.118 Sum_probs=145.7
Q ss_pred CCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCC-CCCCCCEEEccCCcCccccchhccCCCCCCEEEcc
Q 012103 237 LWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVR-FLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLY 314 (471)
Q Consensus 237 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~ 314 (471)
-+.++++++.++ .+|..+. +.++.|++++|.+++..+ .+. .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 367888888887 4665543 468999999999988766 565 88999999999999997777888999999999999
Q ss_pred cCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhh---hcCCCCcEEEccCCcCc
Q 012103 315 TNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATY---ANCLTLQRFRVSNNSLK 391 (471)
Q Consensus 315 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~L~~n~~~ 391 (471)
+|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..| ..+++|+.|+|++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987767778889999999999999987778888899999999999999986544445 56899999999999999
Q ss_pred ccccccccCCCC--CCEeecccCcccc
Q 012103 392 GTVPAGIWGLPE--VNIIDIALNQIEG 416 (471)
Q Consensus 392 ~~~~~~~~~~~~--L~~L~ls~n~~~~ 416 (471)
+..+..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 555566777776 4889999998874
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.6e-18 Score=148.11 Aligned_cols=150 Identities=13% Similarity=0.202 Sum_probs=86.3
Q ss_pred CCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeec
Q 012103 282 TNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLM 361 (471)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l 361 (471)
++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555555554 333 3455555555555555443 1224555566666666666665555555566666666666
Q ss_pred cCCccccccchhhhcCCCCcEEEccCCc-CcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 362 LQNKFTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 362 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++|.+++..+..+..+++|++|++++|+ ++ .+| .+..+++|+.|++++|++++. + .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 6666665555666666666666666666 44 444 466666677777777766652 2 5666677777777777665
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=9.8e-18 Score=153.43 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=120.6
Q ss_pred CCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEec
Q 012103 258 LTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDV 337 (471)
Q Consensus 258 l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 337 (471)
+.++..++++++.+.+.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 445556667777766443 4566778888888888877 344 56777888888888888875433 777888888888
Q ss_pred cCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccc
Q 012103 338 SENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 338 ~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
++|.+++ +|.... ++|+.|++++|++++. ..+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 8888773 443222 7788888888877753 347777788888888888774 33 567777788888888877765
Q ss_pred cchhhhccCCCCeeeCCCCcCccc
Q 012103 418 ITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 418 ~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
..+..+++|+.|++++|++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5667777778888888777744
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.1e-17 Score=143.74 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=93.2
Q ss_pred CEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCch-hhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPP-DMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
+++++++|.++ .+|..+.. ++++|++++|.+++..+. .+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 56654432 677777777777644433 366777777777777777776677777777777777777
Q ss_pred CcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77776666667777777777777777777777777777777777777777765544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.1e-19 Score=183.90 Aligned_cols=195 Identities=18% Similarity=0.138 Sum_probs=97.8
Q ss_pred cCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCc-------------CccccchhccCCCCCCEEE-cccCcCccc
Q 012103 256 RNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQ-------------FSGEVPAELGKFKKLVNLS-LYTNKLTGA 321 (471)
Q Consensus 256 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~l~~~~~L~~L~-L~~n~l~~~ 321 (471)
...++|+.|++++|.+...+..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~- 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD- 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch-
Confidence 34566666666666665443355556666666665543 3344445555555555555 33333221
Q ss_pred Cch------hhc--CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 322 LPQ------ELG--SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 322 ~~~------~~~--~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 000 000 00135555555555552 443 555555555555555555 445555555555555555555553
Q ss_pred ccccccCCCCCCEeecccCcccccc-chhhhccCCCCeeeCCCCcCcccchh---hhhcCCCCCEEe
Q 012103 394 VPAGIWGLPEVNIIDIALNQIEGPI-TKDIENAKALNLLFAEYNRLSGELPE---EISKATSLVVIK 456 (471)
Q Consensus 394 ~~~~~~~~~~L~~L~ls~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~---~l~~l~~L~~L~ 456 (471)
+| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..|. .+..+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 44 4555555555555555555544 55555555555555555555543221 122345555554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=4e-17 Score=138.84 Aligned_cols=137 Identities=12% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCCEEeccCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 45555555566666666666666543 4556666677777777777655666565667777777
Q ss_pred cccCcccccc-chhhhccCCCCeeeCCCCcCcccch---hhhhcCCCCCEEeccCCcCcccCCCC
Q 012103 409 IALNQIEGPI-TKDIENAKALNLLFAEYNRLSGELP---EEISKATSLVVIKLNNNQLTGKIPAS 469 (471)
Q Consensus 409 ls~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~~sg~ip~~ 469 (471)
+++|++++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+. .+|+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7777776532 2566677777777777777774444 36777777888888887777 66654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.9e-19 Score=180.97 Aligned_cols=182 Identities=18% Similarity=0.222 Sum_probs=125.3
Q ss_pred CCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCc-------------CcccCchhhcCCCCCCEEe-ccCCcccc
Q 012103 279 RFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNK-------------LTGALPQELGSWAEFDFID-VSENLLTG 344 (471)
Q Consensus 279 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~-------------l~~~~~~~~~~~~~L~~L~-L~~n~l~~ 344 (471)
...++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777778877776 667777777777777776654 4455566666666677776 4444332
Q ss_pred cCch------hhc--CCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 345 PIPP------DMC--KRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 345 ~~p~------~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
.++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111 000 01247778888877774 555 777777888888888777 677777777788888888887776
Q ss_pred ccchhhhccCCCCeeeCCCCcCcccc-hhhhhcCCCCCEEeccCCcCcccCC
Q 012103 417 PITKDIENAKALNLLFAEYNRLSGEL-PEEISKATSLVVIKLNNNQLTGKIP 467 (471)
Q Consensus 417 ~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~sg~ip 467 (471)
+| .+.++++|+.|++++|++++.. |..+..+++|+.|+|++|++++..|
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 45 6777778888888888887665 7777778888888888888775544
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.5e-17 Score=150.75 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=108.8
Q ss_pred CCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEc
Q 012103 210 LTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQL 289 (471)
Q Consensus 210 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 289 (471)
+.++..++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 3456666677777663 33 4666777777777777776 344 56677777777777777765544 666777777777
Q ss_pred cCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccc
Q 012103 290 FKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGE 369 (471)
Q Consensus 290 ~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~ 369 (471)
++|.+++ ++.. .. ++|++|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 7777764 3322 22 667777777777764 22 46666677777777777663 33 456666677777777666644
Q ss_pred cchhhhcCCCCcEEEccCCcCcc
Q 012103 370 IPATYANCLTLQRFRVSNNSLKG 392 (471)
Q Consensus 370 ~~~~~~~~~~L~~L~L~~n~~~~ 392 (471)
..+..+++|+.|++++|++.+
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 456666666666666666663
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=9.4e-18 Score=175.10 Aligned_cols=178 Identities=21% Similarity=0.211 Sum_probs=81.6
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 4445555666666666655 44544555566666666666665 55555566666666666666665 556666666666
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC-CCEeecccCccccccchhhhccCCCCeeeCCC
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE-VNIIDIALNQIEGPITKDIENAKALNLLFAEY 435 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 435 (471)
+.|++++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..... +..+++++|.+++.+|.. |+.|++++
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~ 368 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINT 368 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeec
Confidence 66666666655 45555666666666666666666555554433211 123556666666655532 33344444
Q ss_pred C--------cCcccchhhhhcCCCCCEEeccCCcCcc
Q 012103 436 N--------RLSGELPEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 436 n--------~l~~~~p~~l~~l~~L~~L~l~~n~~sg 464 (471)
| .+.+..+..+..+..+....+++|.+.+
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ---------------------------------CCCG
T ss_pred ccccccccCCccccccchhhcccccceeeeecccccc
Confidence 4 2333333334445555556666666553
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.7e-17 Score=155.92 Aligned_cols=103 Identities=12% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc-EEEccCCcCcccccccccCCCCCCEe
Q 012103 329 WAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ-RFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 329 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
+++|+.+++++|.++..-+..+..+.+|+.+++.+| +...-...|.+|++|+ .+++.+ .++..-+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666777666665333345666667777777666 5545555677777777 777776 5654445667777777777
Q ss_pred ecccCccccccchhhhccCCCCeeeC
Q 012103 408 DIALNQIEGPITKDIENAKALNLLFA 433 (471)
Q Consensus 408 ~ls~n~~~~~~~~~~~~l~~L~~L~l 433 (471)
++++|++....+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 77777777666667777777777653
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.6e-16 Score=132.25 Aligned_cols=128 Identities=11% Similarity=0.086 Sum_probs=79.7
Q ss_pred CCCCEEeccCCccc-ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEee
Q 012103 330 AEFDFIDVSENLLT-GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIID 408 (471)
Q Consensus 330 ~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 408 (471)
++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555555 45555555556666666666655543 4555666666666666666655666555566677777
Q ss_pred cccCccccc-cchhhhccCCCCeeeCCCCcCcccch---hhhhcCCCCCEEeccC
Q 012103 409 IALNQIEGP-ITKDIENAKALNLLFAEYNRLSGELP---EEISKATSLVVIKLNN 459 (471)
Q Consensus 409 ls~n~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~ 459 (471)
+++|++++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777766653 33566677777777777777765544 4667777777777653
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.6e-16 Score=133.77 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=76.0
Q ss_pred CCCCEEEcccCcCc-ccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 306 KKLVNLSLYTNKLT-GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 306 ~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34444444555555555555555432 3445555566666666665554555555566666666
Q ss_pred ccCCcCcccc-cccccCCCCCCEeecccCccccccc---hhhhccCCCCeeeCCCCcCc
Q 012103 385 VSNNSLKGTV-PAGIWGLPEVNIIDIALNQIEGPIT---KDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 385 L~~n~~~~~~-~~~~~~~~~L~~L~ls~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~ 439 (471)
+++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666666321 1456666666777777776665444 35666677777777777665
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=4.9e-16 Score=135.01 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=135.7
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCch-hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQ-ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
+.++++++.++ .+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 6776554 3899999999999866554 488999999999999999988899999999999999999
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccch-hhhccCCCCeeeCCCCcCcccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITK-DIENAKALNLLFAEYNRLSGEL 442 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 442 (471)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+..+. ++.. .++...+..+......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 999988888899999999999999999988899999999999999999999976542 1111 1222234444444445
Q ss_pred hhhhhcCCCCCEEeccCCcCc
Q 012103 443 PEEISKATSLVVIKLNNNQLT 463 (471)
Q Consensus 443 p~~l~~l~~L~~L~l~~n~~s 463 (471)
|..+. .....++..+.+.
T Consensus 166 P~~l~---~~~l~~l~~~~~~ 183 (192)
T 1w8a_A 166 PSKVR---DVQIKDLPHSEFK 183 (192)
T ss_dssp STTTT---TSBGGGSCTTTCC
T ss_pred ChHHc---CCChhhCcHhhcC
Confidence 55443 3444556666664
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=2e-16 Score=149.94 Aligned_cols=283 Identities=11% Similarity=0.022 Sum_probs=174.5
Q ss_pred CCCCcEEEccCCCCCCCCCCccccC-CCCCCEEEcccccCc--ccCCccccCCCCCcEEEcccCcCCCcCCccccC----
Q 012103 161 MTNLVSLSVGDNPFDPTPFPDQVVK-LNKLNWLYLTNCSID--GQIPVEIGNLTELINLELSDNNISGEIPSEIGN---- 233 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~~~~l~~-l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~---- 233 (471)
+.+++.|.++++-- ... ...+.. +++|++|++++|++. ...+..+ +.++.+.+..+.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~i~-~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLN-AED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEEC-HHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEecccc-HHH-HHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccc
Confidence 45677777765411 110 122223 667777777777766 2211111 1233333333322 1233444
Q ss_pred ----CCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcC----ccccchhccC
Q 012103 234 ----LVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQF----SGEVPAELGK 304 (471)
Q Consensus 234 ----l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l----~~~~~~~l~~ 304 (471)
+.+|+++++.. .++...+..|.++++|+.+++.+|.+....+ .+..+.++..+....+.. .......+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777776 6665555667777777777777776654444 556555555555444221 1111223444
Q ss_pred CCCCC-EEEcccCcCcccCchhh----cCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCC
Q 012103 305 FKKLV-NLSLYTNKLTGALPQEL----GSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLT 379 (471)
Q Consensus 305 ~~~L~-~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 379 (471)
+..|+ .+.+.... .++..+ ....++..+.+.++-...........+++|+.+++++|+++......|.+|++
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 45555 33333211 111111 12345566666654322111111123789999999999998777778999999
Q ss_pred CcEEEccCCcCcccccccccCCCCCC-EeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEec
Q 012103 380 LQRFRVSNNSLKGTVPAGIWGLPEVN-IIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKL 457 (471)
Q Consensus 380 L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 457 (471)
|+.+++.+| ++..-+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|++...-+.+|..+++|+.|..
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998 7755567799999999 999998 777777789999999999999999999777788999999998863
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=8.6e-16 Score=133.48 Aligned_cols=127 Identities=17% Similarity=0.214 Sum_probs=85.3
Q ss_pred CEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCC
Q 012103 309 VNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNN 388 (471)
Q Consensus 309 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 388 (471)
+.++++++.++ .+|..+. +++++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46677777766 4554432 46777777777776 66666666777777777777777666666677777777777777
Q ss_pred cCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 389 SLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 389 ~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777555556666777777777777776555555666677777777777664
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=7.2e-16 Score=132.21 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
.+.++++++.++ .+|..+ .+++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777776 445433 25777888887777754444566777777777777777765555667777777777777
Q ss_pred CcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccch
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELP 443 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 443 (471)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77775555556777777777777777776555556677777777777777776554
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=6.3e-16 Score=128.56 Aligned_cols=127 Identities=17% Similarity=0.231 Sum_probs=81.2
Q ss_pred CCCCEEEcccCcCc-ccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEE
Q 012103 306 KKLVNLSLYTNKLT-GALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFR 384 (471)
Q Consensus 306 ~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 384 (471)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666655 45555555566666666666666533 4455566666666666666655666666677777777
Q ss_pred ccCCcCccc-ccccccCCCCCCEeecccCccccccc---hhhhccCCCCeeeCC
Q 012103 385 VSNNSLKGT-VPAGIWGLPEVNIIDIALNQIEGPIT---KDIENAKALNLLFAE 434 (471)
Q Consensus 385 L~~n~~~~~-~~~~~~~~~~L~~L~ls~n~~~~~~~---~~~~~l~~L~~L~l~ 434 (471)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777642 23566777777777777777776554 466777777777765
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=7.7e-14 Score=135.49 Aligned_cols=332 Identities=10% Similarity=0.047 Sum_probs=178.1
Q ss_pred ccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccc
Q 012103 80 TLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSL 158 (471)
Q Consensus 80 ~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~ 158 (471)
.++..+|.++.+|+.+.+.. .++..-..+|.+|++|+.+++.++ ++.... .+.++++|+.+.+..+ +..... ..|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~-~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV-EAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT-TTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc-eee
Confidence 34555577777777777753 344333456777777777777544 333333 5555566655544322 111111 233
Q ss_pred cCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCC
Q 012103 159 GNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLW 238 (471)
Q Consensus 159 ~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 238 (471)
.++..++...... ........|.++++|+.+.+..+. .......|.++.+|+
T Consensus 137 ~~~~~~~~~~~~~---------------------------~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 137 KGCDFKEITIPEG---------------------------VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK 188 (394)
T ss_dssp TTCCCSEEECCTT---------------------------CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred ecccccccccCcc---------------------------ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence 3332222111111 111122345555556655554432 212333455555666
Q ss_pred eEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 239 RLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 239 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
.+.+..+ ++......+.++..|+.+.+..+... .........+|+.+.+.... +......+..+..++.+.+..+..
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~ 265 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL 265 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc
Confidence 6655543 33233344555666665555444322 11122233566666665432 223334556666777777765543
Q ss_pred cccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGI 398 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 398 (471)
. .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ +...-...|.+|.+|+.+++.++ ++..-..+|
T Consensus 266 ~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 266 R-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp E-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred e-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 3 33445566667777766655332 124556677777777654 44344556777788888877643 553334567
Q ss_pred cCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEE
Q 012103 399 WGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVI 455 (471)
Q Consensus 399 ~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 455 (471)
.++++|+.+.+..+ +.......|.+|++|+.+.+..+ +. .+..+|..+++|+.+
T Consensus 340 ~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 340 RGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77788888887765 55555567778888888887654 33 344567777777665
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=127.96 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=108.6
Q ss_pred CEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCC
Q 012103 285 VTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQN 364 (471)
Q Consensus 285 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n 364 (471)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 67888898888 5665543 58999999999998 67788888999999999999998766677888999999999999
Q ss_pred ccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCcccc
Q 012103 365 KFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEG 416 (471)
Q Consensus 365 ~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~ 416 (471)
++++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998888889999999999999999995555568889999999999998865
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=9.6e-15 Score=125.13 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=104.6
Q ss_pred CCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccC
Q 012103 284 LVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQ 363 (471)
Q Consensus 284 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~ 363 (471)
.+.++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 4554433 6888999999888866566678888899999999888855555567888899999999
Q ss_pred CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc
Q 012103 364 NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT 419 (471)
Q Consensus 364 n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~ 419 (471)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 98887777777888889999999998885555556778889999999998887654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=2.6e-17 Score=143.96 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=107.5
Q ss_pred CCCCCCEEEcccCcCcccCch------hhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcC
Q 012103 304 KFKKLVNLSLYTNKLTGALPQ------ELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANC 377 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~------~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 377 (471)
..+.++.++++.+.+.|.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 334555555555555555544 66777777777777777764 66 6667777777777777777 566666667
Q ss_pred CCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccc-hhhhccCCCCeeeCCCCcCcccchhh----------h
Q 012103 378 LTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPIT-KDIENAKALNLLFAEYNRLSGELPEE----------I 446 (471)
Q Consensus 378 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~----------l 446 (471)
++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|+.|++++|++.+.+|.. +
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 778888888888774 44 56677788888888888875332 46777888888888888887665542 7
Q ss_pred hcCCCCCEEeccCCcCc
Q 012103 447 SKATSLVVIKLNNNQLT 463 (471)
Q Consensus 447 ~~l~~L~~L~l~~n~~s 463 (471)
..+++|+.|| +|+++
T Consensus 171 ~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHCSSCSEEC--CGGGT
T ss_pred HhCCCcEEEC--CcccC
Confidence 7788888886 66665
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.6e-13 Score=132.86 Aligned_cols=262 Identities=7% Similarity=0.006 Sum_probs=123.6
Q ss_pred CCCCcEEEccCCCCCCCCC-CccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCe
Q 012103 161 MTNLVSLSVGDNPFDPTPF-PDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWR 239 (471)
Q Consensus 161 l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 239 (471)
+..++.+.+..+ + ..+ ...+..+ +|+.+.+..+ +......+|.++ +|+.+.+.. .+....+..|.+|.+|+.
T Consensus 112 ~~~l~~i~ip~~-i--~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-V--KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-C--CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-c--CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 355666665543 1 111 2233332 5666666554 443333445443 566666654 444344455666666666
Q ss_pred EeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcC
Q 012103 240 LELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKL 318 (471)
Q Consensus 240 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l 318 (471)
+++..|.++......|. ..+|+.+.+.++ +..... .+..+++|+.+++..+ ++......+.. .+|+.+.+ .+.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence 66666666533333343 456666666533 332222 5555666666666543 33233334444 45555555 2334
Q ss_pred cccCchhhcCCCCCCEEeccCCccc-----ccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccc
Q 012103 319 TGALPQELGSWAEFDFIDVSENLLT-----GPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGT 393 (471)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~ 393 (471)
+......+.++++|+.+++.++.+. ..-+..+..|++|+.+.+.+ .+...-...|.+|++|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 3333444555555555555554432 11223344455555555542 233333344555555555555332 3322
Q ss_pred ccccccCCCCCCEeecccCccccccchhhhccC-CCCeeeCCCCc
Q 012103 394 VPAGIWGLPEVNIIDIALNQIEGPITKDIENAK-ALNLLFAEYNR 437 (471)
Q Consensus 394 ~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~-~L~~L~l~~n~ 437 (471)
-..+|.++ +|+.+++++|......+..|.+++ .++.|++..+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 23344444 555555555544433333444442 34444444443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=5.5e-15 Score=126.50 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred ccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCc
Q 012103 302 LGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQ 381 (471)
Q Consensus 302 l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 381 (471)
+..+++|++|++++|.++ .++......++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 345567777777777776 3343222233677777777776642 4556666667777777766644444446666666
Q ss_pred EEEccCCcCcccccc--cccCCCCCCEeecccCccccccch----hhhccCCCCeeeCCCCcCc
Q 012103 382 RFRVSNNSLKGTVPA--GIWGLPEVNIIDIALNQIEGPITK----DIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 382 ~L~L~~n~~~~~~~~--~~~~~~~L~~L~ls~n~~~~~~~~----~~~~l~~L~~L~l~~n~l~ 439 (471)
.|++++|+++ .+|. .+..+++|+.|++++|++.. +|. .+..+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666665 4444 55666666666666666653 333 2556666666666666554
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=5.5e-13 Score=129.47 Aligned_cols=321 Identities=9% Similarity=-0.009 Sum_probs=168.2
Q ss_pred CCEEEEEcCCCCCccccCcccccCCCCCcEEeCCCCCCCccccccccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEE
Q 012103 65 SFVQEIELSNRNLKGTLPFDSICQLQALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLY 143 (471)
Q Consensus 65 ~~v~~L~L~~~~l~g~l~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~ 143 (471)
..++++.+.. .++ .++..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+ +..... .+.++..++...
T Consensus 71 ~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 71 RKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 4688999964 465 777778999999999999754 54344567899999999887654 333333 565555444333
Q ss_pred ccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcC
Q 012103 144 LNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNI 223 (471)
Q Consensus 144 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 223 (471)
....... .. ..|.++++|+.+.+.++.. .--...+..+.+|+.+.+..+ +.......|.++..|+.+.+..+..
T Consensus 147 ~~~~~~i--~~-~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 147 PEGVTVI--GD-EAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp CTTCCEE--CT-TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred Ccccccc--ch-hhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 3322221 12 5678888888888876532 111345566777777777654 3323344566666666666554432
Q ss_pred CCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhcc
Q 012103 224 SGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELG 303 (471)
Q Consensus 224 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 303 (471)
. +.........|+.+.+.... +......+..+..++.+.+..+...-....+..+..++.+......+. ...
T Consensus 221 ~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~-- 292 (394)
T 4fs7_A 221 Y--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKT-- 292 (394)
T ss_dssp E--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTT--
T ss_pred E--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec---ccc--
Confidence 1 22223334556665554321 212233344555555555544433212223444444444444333221 122
Q ss_pred CCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEE
Q 012103 304 KFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRF 383 (471)
Q Consensus 304 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 383 (471)
+..+.+|+.+.+.++ ++..-..++..+.+|+.+++..+ ++..-...|.+|.+|+.+
T Consensus 293 ----------------------F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 293 ----------------------FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp ----------------------TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred ----------------------ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 334444555544433 22111233444555555555432 332334455566666666
Q ss_pred EccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCe
Q 012103 384 RVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNL 430 (471)
Q Consensus 384 ~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~ 430 (471)
++..+ ++..-..+|.++++|+.+++..+ +. .+...|.++++|+.
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 66544 44223345566666666666543 21 12344555555554
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=6.1e-13 Score=128.79 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=96.6
Q ss_pred CCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccc-cCCCCCCCCEEEcc
Q 012103 212 ELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLS-EVRFLTNLVTLQLF 290 (471)
Q Consensus 212 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~ 290 (471)
+|+.+.+..+ +.......|.+ .+|+.+.+.. .+.......|.++++|+.+++.+|.+..... .+. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 3444444433 33222233333 2344444443 3332333444444555555554444443333 222 3444555444
Q ss_pred CCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccc---
Q 012103 291 KNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFT--- 367 (471)
Q Consensus 291 ~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~--- 367 (471)
.+ +.......+.++++|+.+++..+ ++......+.+ .+|+.+.+.+ .++..-+.++..|++|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 22 33233334444445555544432 22122222333 3444444422 222122233444445555554444332
Q ss_pred --cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhh
Q 012103 368 --GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEE 445 (471)
Q Consensus 368 --~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 445 (471)
......|.+|++|+.+++. +.++..-..+|.++++|+.+.+..+ ++......|.++ +|+.+.+++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 2223344445555555444 2233222334444445555554332 333333444444 4555555554444333333
Q ss_pred hhcCC-CCCEEeccC
Q 012103 446 ISKAT-SLVVIKLNN 459 (471)
Q Consensus 446 l~~l~-~L~~L~l~~ 459 (471)
|..++ .++.|.+-.
T Consensus 365 F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 365 WYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCSCTTCCEEEECG
T ss_pred ccCCCCCccEEEeCH
Confidence 33332 344444433
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=2.1e-14 Score=122.88 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred CCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEe
Q 012103 328 SWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNII 407 (471)
Q Consensus 328 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 407 (471)
.+.+|+.|++++|.++ .+|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3445555555555555 3333222222555555555555532 345555555555555555553322333555555555
Q ss_pred ecccCccccccch--hhhccCCCCeeeCCCCcCcccchhh----hhcCCCCCEEeccCCcC
Q 012103 408 DIALNQIEGPITK--DIENAKALNLLFAEYNRLSGELPEE----ISKATSLVVIKLNNNQL 462 (471)
Q Consensus 408 ~ls~n~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~~ 462 (471)
++++|+++. +|. .+..+++|+.|++++|++. .+|.. +..+++|+.|++++|.+
T Consensus 94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555542 333 4555555555555555555 33432 55555555555555544
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=3.4e-16 Score=136.82 Aligned_cols=150 Identities=18% Similarity=0.229 Sum_probs=113.4
Q ss_pred CCCEEEccCCcCccccc------hhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 283 NLVTLQLFKNQFSGEVP------AELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 283 ~L~~L~l~~n~l~~~~~------~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.++.++++.+.+.+..| ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 33444444444444433 377888888889998888885 66 7778888999999998887 677777777889
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc-ccccCCCCCCEeecccCccccccch----------hhhcc
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP-AGIWGLPEVNIIDIALNQIEGPITK----------DIENA 425 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~~~----------~~~~l 425 (471)
+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999998885 44 57788899999999999884322 4678889999999999998876554 37788
Q ss_pred CCCCeeeCCCCcCc
Q 012103 426 KALNLLFAEYNRLS 439 (471)
Q Consensus 426 ~~L~~L~l~~n~l~ 439 (471)
++|+.|+ +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 9999887 66665
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.7e-13 Score=116.37 Aligned_cols=107 Identities=20% Similarity=0.236 Sum_probs=83.4
Q ss_pred CCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeeccc
Q 012103 332 FDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIAL 411 (471)
Q Consensus 332 L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~ 411 (471)
.+.+++++|.++ .+|..+ .++++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467888888887 577655 36788888888888877777788888888888888888865555677888888888888
Q ss_pred CccccccchhhhccCCCCeeeCCCCcCccc
Q 012103 412 NQIEGPITKDIENAKALNLLFAEYNRLSGE 441 (471)
Q Consensus 412 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 441 (471)
|++++..+..+.++++|+.|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888876666777888888888888877644
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.9e-13 Score=115.31 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=83.0
Q ss_pred CEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccC
Q 012103 333 DFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALN 412 (471)
Q Consensus 333 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n 412 (471)
+.+++++|.++ .+|..+. ++|+.|++++|++.+..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 7776553 67888888888888777778888888888888888888554555678888888888888
Q ss_pred ccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 413 QIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 413 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
++.+..+..+..+++|+.|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8887666667888888888888888774
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=2.7e-14 Score=136.95 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccc----cchh
Q 012103 354 GTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGP----ITKD 421 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~----~~~~ 421 (471)
++|+.|++++|.++.. ++..+..+++|++|+|++|.+++. ++..+...++|+.|+|++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 4455555555544421 222334455555555555555432 233444455566666666665542 2233
Q ss_pred hhccCCCCeeeCCCCcCcccchhhhhcC
Q 012103 422 IENAKALNLLFAEYNRLSGELPEEISKA 449 (471)
Q Consensus 422 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l 449 (471)
+...++|+.|++++|.|+......+..+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 3445666666666666655444444443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=7.6e-13 Score=112.28 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=94.3
Q ss_pred CCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 307 KLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 307 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
+.+.+++++|.++ .+|..+ .+++++|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 567655 3789999999999997778889999999999999999997777778999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCcccccc
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGPI 418 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~ 418 (471)
+|++++..+..+..+++|++|++++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999666667889999999999999998653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=5.1e-14 Score=135.04 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=112.8
Q ss_pred CCCCEEEcccCcCcccCchhh----c-CCCCCCEEeccCCcccccCchhh-cCCCCCceeeccCCccccccchhh-----
Q 012103 306 KKLVNLSLYTNKLTGALPQEL----G-SWAEFDFIDVSENLLTGPIPPDM-CKRGTMRDLLMLQNKFTGEIPATY----- 374 (471)
Q Consensus 306 ~~L~~L~L~~n~l~~~~~~~~----~-~~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~l~~n~~~~~~~~~~----- 374 (471)
+.|+.|++++|.++......+ . ...+|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666654322222 2 22567777777777653322222 224568888888888875444443
Q ss_pred hcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCcccccc----chhhhccCCCCeeeCCCCcCccc----c
Q 012103 375 ANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGPI----TKDIENAKALNLLFAEYNRLSGE----L 442 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~ 442 (471)
...++|++|+|++|.+++. ++..+...++|++|+|++|.+++.. +..+...++|+.|++++|.|+.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2468999999999999752 4555678899999999999998643 56677788999999999999863 4
Q ss_pred hhhhhcCCCCCEEeccCCcCcc
Q 012103 443 PEEISKATSLVVIKLNNNQLTG 464 (471)
Q Consensus 443 p~~l~~l~~L~~L~l~~n~~sg 464 (471)
+..+...++|++|+|++|+|++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 5566678999999999999974
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.1e-12 Score=111.65 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=92.0
Q ss_pred CCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccC
Q 012103 308 LVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSN 387 (471)
Q Consensus 308 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 387 (471)
-+.+++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 378999999996 6776554 7899999999999977788889999999999999999976666788999999999999
Q ss_pred CcCcccccccccCCCCCCEeecccCccccc
Q 012103 388 NSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 388 n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
|++++..+..+..+++|++|++++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999965555688999999999999998854
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=1.3e-10 Score=112.66 Aligned_cols=132 Identities=14% Similarity=0.206 Sum_probs=75.2
Q ss_pred hhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCC
Q 012103 324 QELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPE 403 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 403 (471)
..+..+..|+.+.+.++... .-..++..+.+|+.+.+. +.+...-...|.+|.+|+.+++..+ ++..-..+|.++++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34556666666666554332 223345566677777765 3344344456777777777777653 44233456777777
Q ss_pred CCEeecccCccccccchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCcC
Q 012103 404 VNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 404 L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~~ 462 (471)
|+.+.+..+ ++......|.+|++|+.+.+.++... ...+..+.+|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 888777554 55455567778888888888777543 24566677788777776654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=3.1e-10 Score=110.02 Aligned_cols=333 Identities=10% Similarity=0.063 Sum_probs=167.6
Q ss_pred cCcccccCCC-CCcEEeCCCCCCCccccccccCCCCCCEEeCCCCc---CCccCC-CCCCCCCCCEEEccCCCCcccCCc
Q 012103 81 LPFDSICQLQ-ALHKLSLGFNSLYGEISKDLNNCVKLQYLDLGNNV---FSGSFP-EISSLNELQHLYLNLSGFSGVFPW 155 (471)
Q Consensus 81 l~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~ 155 (471)
++..+|.+++ .|+.+.+.. .++..-..+|.+|.+|+.+.+..+. ++.... .+.++.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~- 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS- 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT-
T ss_pred cCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh-
Confidence 4444566664 477777754 2443445567777777777776553 333333 5566666666655433 222222
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCCccccCCCCCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCC
Q 012103 156 MSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLNKLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLV 235 (471)
Q Consensus 156 ~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 235 (471)
..+.++.+|+.+.+..+.. .--...+..+.+|+.+.+..+ +...-...|. ..+|+.+.+..+-.. .....+.++.
T Consensus 131 ~aF~~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhcccccccccceee--eecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence 4556666666666654321 111233445555666555433 2211122232 234555555433211 2333444455
Q ss_pred CCCeEeeccccccccCCccccCCCCCCEEeCCCCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEccc
Q 012103 236 KLWRLELYNNQLSGKLPVGLRNLTNLANFDASTNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYT 315 (471)
Q Consensus 236 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~ 315 (471)
.++............-...+........ ..........+..+.+... +.......+..+..|+.+.+..
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDY----------ALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCE----------EEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred ccceecccccccccccceeecccccccc----------cccccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence 5554444333222100000000000000 0001112233444444322 2223345667777788887765
Q ss_pred CcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCccccc
Q 012103 316 NKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVP 395 (471)
Q Consensus 316 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~ 395 (471)
+... .....+.+++.|+.+.+.. .++..-..++..|.+|+.+.+..+ ++..-...|.+|.+|+.+.+..+ ++..-.
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCG
T ss_pred ccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhH
Confidence 4432 3345667778888888864 343222345667888888888754 44444567888888998888654 553335
Q ss_pred ccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 396 AGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 396 ~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
.+|.++++|+.+++.++.... ..+..+.+|+.+.+..+.+.
T Consensus 351 ~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp GGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred hHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 678888899999888875432 45667788888887766543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4e-11 Score=114.21 Aligned_cols=105 Identities=12% Similarity=0.162 Sum_probs=85.4
Q ss_pred CEEeccCC-cccccCchhhcCCCCCceeeccC-CccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 333 DFIDVSEN-LLTGPIPPDMCKRGTMRDLLMLQ-NKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 333 ~~L~L~~n-~l~~~~p~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
..++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 777 6888 88888889999986 88887777788888889999999998888777788888888899999
Q ss_pred cCccccccchhhhccCCCCeeeCCCCcCcc
Q 012103 411 LNQIEGPITKDIENAKALNLLFAEYNRLSG 440 (471)
Q Consensus 411 ~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 440 (471)
+|++++..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888876666666555 8888888888863
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=3.9e-11 Score=114.32 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=92.5
Q ss_pred CEEEcccC-cCcccCchhhcCCCCCCEEeccC-CcccccCchhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEcc
Q 012103 309 VNLSLYTN-KLTGALPQELGSWAEFDFIDVSE-NLLTGPIPPDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVS 386 (471)
Q Consensus 309 ~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 386 (471)
..++++++ .++ .+|. +..+.+|+.|+|++ |.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788888 888 5888 99999999999996 99997777889999999999999999999889999999999999999
Q ss_pred CCcCcccccccccCCCCCCEeecccCccccc
Q 012103 387 NNSLKGTVPAGIWGLPEVNIIDIALNQIEGP 417 (471)
Q Consensus 387 ~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 417 (471)
+|++++..+..+..++ |+.|++++|++...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999965555555555 99999999999853
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=4.1e-08 Score=94.46 Aligned_cols=130 Identities=11% Similarity=0.103 Sum_probs=55.5
Q ss_pred cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCchhhcCCCCC
Q 012103 277 EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIPPDMCKRGTM 356 (471)
Q Consensus 277 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L 356 (471)
.+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++......+.++..|+.+.+..+ ++..-...+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3344455555555433 22223334444555555555433 32222333444455555555432 221112234444555
Q ss_pred ceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecc
Q 012103 357 RDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIA 410 (471)
Q Consensus 357 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls 410 (471)
+.+.+.++.+...-...|.+|.+|+.+.+..+ ++..-..+|.++++|+.+.+.
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 55555444444333344555555555555332 331222344445555555443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=4.7e-10 Score=106.59 Aligned_cols=199 Identities=15% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCCCEEeCCCCcCcc-cc--------ccCCCCCCCCEEEccCCcCc---------cccchhccCCCCCCEEEcccCcCcc
Q 012103 259 TNLANFDASTNFLEG-DL--------SEVRFLTNLVTLQLFKNQFS---------GEVPAELGKFKKLVNLSLYTNKLTG 320 (471)
Q Consensus 259 ~~L~~L~l~~n~~~~-~~--------~~~~~~~~L~~L~l~~n~l~---------~~~~~~l~~~~~L~~L~L~~n~l~~ 320 (471)
..++.|.+....+.+ .. .....+++|+.|.+...... +.+...+..+|+|+.|.+++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456677777555432 11 12345678999988665321 124455677788999999887311
Q ss_pred cCchhhcCCCCCCEEeccCCcccccCchhhc--CCCCCceeeccC--Cccccc-----cchhh--hcCCCCcEEEccCCc
Q 012103 321 ALPQELGSWAEFDFIDVSENLLTGPIPPDMC--KRGTMRDLLMLQ--NKFTGE-----IPATY--ANCLTLQRFRVSNNS 389 (471)
Q Consensus 321 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~~~~L~~L~l~~--n~~~~~-----~~~~~--~~~~~L~~L~L~~n~ 389 (471)
.++. + ..++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +...+ ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2232 3 367899999988877644333443 678899888853 221111 11122 247889999998888
Q ss_pred Ccccccccc---cCCCCCCEeecccCccccc----cchhhhccCCCCeeeCCCCcCcccchhhhhcCCCCCEEeccCCc
Q 012103 390 LKGTVPAGI---WGLPEVNIIDIALNQIEGP----ITKDIENAKALNLLFAEYNRLSGELPEEISKATSLVVIKLNNNQ 461 (471)
Q Consensus 390 ~~~~~~~~~---~~~~~L~~L~ls~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 461 (471)
+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+...- ...+++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 875443322 3567889999988888764 334445678889999988888766555555411 4667888776
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=6.8e-10 Score=105.44 Aligned_cols=180 Identities=9% Similarity=0.080 Sum_probs=123.2
Q ss_pred cccCCCCCCEEeCCCCcCc---------cccc-cCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCc
Q 012103 254 GLRNLTNLANFDASTNFLE---------GDLS-EVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALP 323 (471)
Q Consensus 254 ~l~~l~~L~~L~l~~n~~~---------~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~ 323 (471)
....+++|+.|.+...... +.+. .+..+|+|+.|+++++.-. .++. + .+++|+.|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 3456789999988765331 1122 4466799999999887312 2333 3 37899999999988875444
Q ss_pred hhhc--CCCCCCEEeccC--Cccccc-----Cchhh--cCCCCCceeeccCCccccccchhhh---cCCCCcEEEccCCc
Q 012103 324 QELG--SWAEFDFIDVSE--NLLTGP-----IPPDM--CKRGTMRDLLMLQNKFTGEIPATYA---NCLTLQRFRVSNNS 389 (471)
Q Consensus 324 ~~~~--~~~~L~~L~L~~--n~l~~~-----~p~~~--~~~~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~L~~n~ 389 (471)
..+. .+++|++|+|+. +...+. +...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 4443 789999999863 222111 11222 2478999999999988765444443 47899999999999
Q ss_pred Cccc----ccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCc
Q 012103 390 LKGT----VPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNR 437 (471)
Q Consensus 390 ~~~~----~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~ 437 (471)
+.+. ++..+..+++|+.|++++|.+++.....+...- ...++++.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 9864 344445678999999999998866555555411 3568888887
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=2e-07 Score=89.70 Aligned_cols=315 Identities=9% Similarity=0.018 Sum_probs=172.7
Q ss_pred cccCCCCCCEEeCCCCcCCccCC-CCCCCCCCCEEEccCCCCcccCCcccccCCCCCcEEEccCCCCCCCCCCccccCCC
Q 012103 109 DLNNCVKLQYLDLGNNVFSGSFP-EISSLNELQHLYLNLSGFSGVFPWMSLGNMTNLVSLSVGDNPFDPTPFPDQVVKLN 187 (471)
Q Consensus 109 ~~~~l~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 187 (471)
++....+|+.+.+.. .++.... +|.++.+|+.+.+..+ ++.... .+|.++ +|+.+.+..+ + ..+........
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~-~aF~~c-~l~~i~~~~~-l--~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGD-GAFADT-KLQSYTGMER-V--KKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECT-TTTTTC-CCCEEEECTT-C--CEECTTTTTTC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEech-hhhcCC-CCceEECCce-e--eEeccceeccC
Confidence 345556777777754 3444444 6677777777777543 333322 455554 4555555433 1 11121111223
Q ss_pred CCCEEEcccccCcccCCccccCCCCCcEEEcccCcCCCcCCccccCCCCCCeEeeccccccccCCccccCCCCCCEEeCC
Q 012103 188 KLNWLYLTNCSIDGQIPVEIGNLTELINLELSDNNISGEIPSEIGNLVKLWRLELYNNQLSGKLPVGLRNLTNLANFDAS 267 (471)
Q Consensus 188 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 267 (471)
+|+.+.+..+- .......|.++ +++.+.+..+ ++......+..+..++.+.+..+...........
T Consensus 114 ~L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~----------- 179 (379)
T 4h09_A 114 DLDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL----------- 179 (379)
T ss_dssp CCSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------
T ss_pred CcccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-----------
Confidence 45555554321 11111222222 3333333321 1212222333444444444433221100000000
Q ss_pred CCcCccccccCCCCCCCCEEEccCCcCccccchhccCCCCCCEEEcccCcCcccCchhhcCCCCCCEEeccCCcccccCc
Q 012103 268 TNFLEGDLSEVRFLTNLVTLQLFKNQFSGEVPAELGKFKKLVNLSLYTNKLTGALPQELGSWAEFDFIDVSENLLTGPIP 347 (471)
Q Consensus 268 ~n~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 347 (471)
.+........+.....+..+.+...... .....+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++..-.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 180 YNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp EETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred cccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 0000000112334455666655544322 33455666788888888654 33344556778889999998776 442334
Q ss_pred hhhcCCCCCceeeccCCccccccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccccccchhhhccCC
Q 012103 348 PDMCKRGTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKA 427 (471)
Q Consensus 348 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~ 427 (471)
.++..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-..+|.++++|+.+.+..+ ++......|.+|++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 56777889999998654 44344567889999999999988888445678889999999999765 65555678899999
Q ss_pred CCeeeCCCCcCcccchhhhhcCC
Q 012103 428 LNLLFAEYNRLSGELPEEISKAT 450 (471)
Q Consensus 428 L~~L~l~~n~l~~~~p~~l~~l~ 450 (471)
|+.+.+..+ ++..-..+|..+.
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 999998765 5534455666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=5.4e-09 Score=89.61 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=59.3
Q ss_pred hhhcCCCCCCEEeccCC-ccccc----CchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc-
Q 012103 324 QELGSWAEFDFIDVSEN-LLTGP----IPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT- 393 (471)
Q Consensus 324 ~~~~~~~~L~~L~L~~n-~l~~~----~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~- 393 (471)
..+...+.|++|++++| .+... +...+...++|+.|++++|.+... +...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455666777777776 65432 223344455666666666666532 223334445566666666665532
Q ss_pred ---ccccccCCCCCCEeec--ccCccccc----cchhhhccCCCCeeeCCCCcCc
Q 012103 394 ---VPAGIWGLPEVNIIDI--ALNQIEGP----ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 394 ---~~~~~~~~~~L~~L~l--s~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+...+...+.|++|++ ++|.++.. +...+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334444555555555 55555543 2223333345555555555543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=1.5e-08 Score=86.75 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=53.1
Q ss_pred hhcCCCCCceeeccCC-ccccc----cchhhhcCCCCcEEEccCCcCccc----ccccccCCCCCCEeecccCccccc--
Q 012103 349 DMCKRGTMRDLLMLQN-KFTGE----IPATYANCLTLQRFRVSNNSLKGT----VPAGIWGLPEVNIIDIALNQIEGP-- 417 (471)
Q Consensus 349 ~~~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ls~n~~~~~-- 417 (471)
.+...++|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.+++.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3344455555555555 44432 222333445555555555555422 222333444555555555555542
Q ss_pred --cchhhhccCCCCeeeC--CCCcCccc----chhhhhcCCCCCEEeccCCcC
Q 012103 418 --ITKDIENAKALNLLFA--EYNRLSGE----LPEEISKATSLVVIKLNNNQL 462 (471)
Q Consensus 418 --~~~~~~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~ 462 (471)
+...+...++|++|++ ++|.++.. +.+.+...++|+.|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333344455555555 44555432 223333445555555555554
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.68 E-value=7.5e-11 Score=106.31 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=14.4
Q ss_pred CceeeceEeCCCCCCEEEEEc
Q 012103 52 FCNFTGITCNSDSSFVQEIEL 72 (471)
Q Consensus 52 ~c~~~gv~c~~~~~~v~~L~L 72 (471)
.|.|.|+.|+....+|..+..
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEE
T ss_pred HHhcCcEEECCCCCEEEEEEe
Confidence 478999999875455554444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.52 E-value=4.4e-08 Score=88.20 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=57.5
Q ss_pred hcCCCCcEEEccCCcCcc--cccccccCCCCCCEeecccCccccccchhhhccC--CCCeeeCCCCcCcccch-------
Q 012103 375 ANCLTLQRFRVSNNSLKG--TVPAGIWGLPEVNIIDIALNQIEGPITKDIENAK--ALNLLFAEYNRLSGELP------- 443 (471)
Q Consensus 375 ~~~~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p------- 443 (471)
.++++|++|+|++|++++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567788888888888875 3455566778888888888888764 2344444 88888888888886655
Q ss_pred hhhhcCCCCCEEe
Q 012103 444 EEISKATSLVVIK 456 (471)
Q Consensus 444 ~~l~~l~~L~~L~ 456 (471)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 3467788888876
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=1.2e-06 Score=73.16 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=46.3
Q ss_pred CCCceeeccCCccccccchhhhcCCCCcEEEccCCc-CcccccccccCC----CCCCEeecccCc-cccccchhhhccCC
Q 012103 354 GTMRDLLMLQNKFTGEIPATYANCLTLQRFRVSNNS-LKGTVPAGIWGL----PEVNIIDIALNQ-IEGPITKDIENAKA 427 (471)
Q Consensus 354 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~----~~L~~L~ls~n~-~~~~~~~~~~~l~~ 427 (471)
..|+.|+++++.++..-...+..|++|+.|+|++|. +++.--..+..+ ++|+.|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456666666666665544555666666666666663 543322223332 346666666653 55544444555666
Q ss_pred CCeeeCCCCc
Q 012103 428 LNLLFAEYNR 437 (471)
Q Consensus 428 L~~L~l~~n~ 437 (471)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.01 E-value=3.1e-06 Score=70.61 Aligned_cols=83 Identities=4% Similarity=0.005 Sum_probs=41.2
Q ss_pred CCCEEeccCCcccccCchhhcCCCCCceeeccCCc-cccccchhhhcC----CCCcEEEccCCc-CcccccccccCCCCC
Q 012103 331 EFDFIDVSENLLTGPIPPDMCKRGTMRDLLMLQNK-FTGEIPATYANC----LTLQRFRVSNNS-LKGTVPAGIWGLPEV 404 (471)
Q Consensus 331 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~----~~L~~L~L~~n~-~~~~~~~~~~~~~~L 404 (471)
.|++||++++.++..--..+..+++|+.|++++|. +++.-...+..+ ++|++|++++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333344555555555555552 444333334332 345555555553 543322334455555
Q ss_pred CEeecccCc
Q 012103 405 NIIDIALNQ 413 (471)
Q Consensus 405 ~~L~ls~n~ 413 (471)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 555555553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=3.1e-05 Score=65.85 Aligned_cols=114 Identities=7% Similarity=0.107 Sum_probs=63.4
Q ss_pred hcCCCCCCEEeccCC-cccc----cCchhhcCCCCCceeeccCCccccc----cchhhhcCCCCcEEEccCCcCccc---
Q 012103 326 LGSWAEFDFIDVSEN-LLTG----PIPPDMCKRGTMRDLLMLQNKFTGE----IPATYANCLTLQRFRVSNNSLKGT--- 393 (471)
Q Consensus 326 ~~~~~~L~~L~L~~n-~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~L~~n~~~~~--- 393 (471)
+..-+.|++|+|++| .+.. .+.+.+.....|+.|+|++|.+... +.+.+..-+.|++|+|++|.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777764 5542 2334455566777777777776643 233344456677777777776632
Q ss_pred -ccccccCCCCCCEeecccC---ccccc----cchhhhccCCCCeeeCCCCcCc
Q 012103 394 -VPAGIWGLPEVNIIDIALN---QIEGP----ITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 394 -~~~~~~~~~~L~~L~ls~n---~~~~~----~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
+...+..-+.|+.|+|++| .+... +.+.+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3334555556666666644 33321 2334444456666666655543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.62 E-value=8.5e-05 Score=63.14 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred ccCCCCCCEEEcccC-cCcc----cCchhhcCCCCCCEEeccCCcccc----cCchhhcCCCCCceeeccCCccccc---
Q 012103 302 LGKFKKLVNLSLYTN-KLTG----ALPQELGSWAEFDFIDVSENLLTG----PIPPDMCKRGTMRDLLMLQNKFTGE--- 369 (471)
Q Consensus 302 l~~~~~L~~L~L~~n-~l~~----~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~l~~n~~~~~--- 369 (471)
+.+-+.|++|+|++| .+.. .+.+.+..-..|+.|+|++|.+.. .+.+.+...+.|+.|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334455666666653 5532 123344445566666666666642 2233344455666666666666542
Q ss_pred -cchhhhcCCCCcEEEccCC---cCccc----ccccccCCCCCCEeecccCcc
Q 012103 370 -IPATYANCLTLQRFRVSNN---SLKGT----VPAGIWGLPEVNIIDIALNQI 414 (471)
Q Consensus 370 -~~~~~~~~~~L~~L~L~~n---~~~~~----~~~~~~~~~~L~~L~ls~n~~ 414 (471)
+.+.+..-+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2233444455666666543 22321 233444455666666665544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.64 E-value=0.0025 Score=50.36 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=43.9
Q ss_pred cEEEccCCcCc-ccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCCcCc
Q 012103 381 QRFRVSNNSLK-GTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYNRLS 439 (471)
Q Consensus 381 ~~L~L~~n~~~-~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 439 (471)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 35665443 46889999999998777777888888999999988764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.33 E-value=0.007 Score=47.78 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=44.4
Q ss_pred ceeeccCCccc-cccchhhhcCCCCcEEEccCCcCcccccccccCCCCCCEeecccCccc
Q 012103 357 RDLLMLQNKFT-GEIPATYANCLTLQRFRVSNNSLKGTVPAGIWGLPEVNIIDIALNQIE 415 (471)
Q Consensus 357 ~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ls~n~~~ 415 (471)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47788888876 3556543 247999999999999555566788999999999999875
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.14 E-value=17 Score=26.51 Aligned_cols=46 Identities=17% Similarity=0.055 Sum_probs=31.5
Q ss_pred CcccccccccCCCCCCEeecccCccccccchhhhccCCCCeeeCCCC
Q 012103 390 LKGTVPAGIWGLPEVNIIDIALNQIEGPITKDIENAKALNLLFAEYN 436 (471)
Q Consensus 390 ~~~~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~l~~L~~L~l~~n 436 (471)
++..-...|.++++|+.+.+-.+ ++.+-...|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34333456778888888888765 44455567888888888887664
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.48 E-value=44 Score=24.22 Aligned_cols=14 Identities=7% Similarity=0.067 Sum_probs=6.2
Q ss_pred cccCCCCCcEEEcc
Q 012103 206 EIGNLTELINLELS 219 (471)
Q Consensus 206 ~l~~l~~L~~L~L~ 219 (471)
.|.+|++|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 34444444444443
Done!