BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012104
(471 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 548 bits (1412), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/461 (59%), Positives = 333/461 (72%), Gaps = 7/461 (1%)
Query: 7 W-GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPG 65
W G SL DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG
Sbjct: 29 WTGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPG 88
Query: 66 NRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIM 125
RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIM
Sbjct: 89 KRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIM 148
Query: 126 GLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185
GLDLP GGHLTHG Y S K+ISATSI+FES+PYK+N TG IDY++L A FRP+LI
Sbjct: 149 GLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI 207
Query: 186 ICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKS 245
I G SAY R DYAR R V D+ A LL DMAHISGLVAA+ +PF++ IVTTTTHK+
Sbjct: 208 IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKT 267
Query: 246 LRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305
LRG R+G+IFYR Y FED+INFAVFPSLQGGPHNH I A+AVALKQ
Sbjct: 268 LRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ 327
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD 365
A TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLVL DLRP GL G + E++ +
Sbjct: 328 ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLE 387
Query: 366 LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE 425
L +IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F+ V + LE++ +
Sbjct: 388 LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSK 447
Query: 426 YGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 462
K L+DF L+ + + + L+ VE+FA +F MPGF
Sbjct: 448 TAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 487
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/456 (60%), Positives = 332/456 (72%), Gaps = 6/456 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++++I+KE RQ G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG
Sbjct: 16 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 75
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
EFIDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP
Sbjct: 76 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 135
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES+PYKVN TGYI+YD+LEE A F PKLII G S
Sbjct: 136 GGHLTHGFMTDK-KKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSC 194
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ +YAR R +AD+ GA L+ DMAHISGLVAA +PFE+CH+VTTTTHK+LRG RA
Sbjct: 195 YSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRA 254
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T F
Sbjct: 255 GMIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEF 314
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y QV AN AL LT GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 315 KVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC 374
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KL 429
NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LTL+IQ + G
Sbjct: 375 NKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAAT 434
Query: 430 LKDFNKGLVNNK---DIEALKADVEKFASSFDMPGF 462
LK+F + L +K ++AL+ +VE FAS F +PG
Sbjct: 435 LKEFKERLAGDKYQAAVQALREEVESFASLFPLPGL 470
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/457 (59%), Positives = 328/457 (71%), Gaps = 7/457 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G S
Sbjct: 145 GGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC 203
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG RA
Sbjct: 204 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA 263
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F
Sbjct: 264 GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 323
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 324 KEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC 383
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KL 429
NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G
Sbjct: 384 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRAT 443
Query: 430 LKDFNKGLV----NNKDIEALKADVEKFASSFDMPGF 462
LK+F + L + + + AL+ +VE FA+ F +PG
Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/457 (59%), Positives = 328/457 (71%), Gaps = 7/457 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYSEG PG RYYGG
Sbjct: 12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP
Sbjct: 72 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G S
Sbjct: 132 GGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC 190
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG RA
Sbjct: 191 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA 250
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F
Sbjct: 251 GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 310
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 311 KEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC 370
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KL 429
NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G
Sbjct: 371 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRAT 430
Query: 430 LKDFNKGLV----NNKDIEALKADVEKFASSFDMPGF 462
LK+F + L + + + AL+ +VE FA+ F +PG
Sbjct: 431 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 467
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/457 (59%), Positives = 328/457 (71%), Gaps = 7/457 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYS+G PG RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G S
Sbjct: 145 GGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC 203
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG RA
Sbjct: 204 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA 263
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F
Sbjct: 264 GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 323
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 324 KEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC 383
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KL 429
NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G
Sbjct: 384 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRAT 443
Query: 430 LKDFNKGLV----NNKDIEALKADVEKFASSFDMPGF 462
LK+F + L + + + AL+ +VE FA+ F +PG
Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/457 (59%), Positives = 327/457 (71%), Gaps = 7/457 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYS G PG RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGG 84
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G S
Sbjct: 145 GGHLTHGFMTDK-KKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSC 203
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG RA
Sbjct: 204 YSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA 263
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMIFYR + +Y+ E IN AVFP LQGGPHNH I +AVALKQA TP F
Sbjct: 264 GMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 323
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 324 KEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC 383
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KL 429
NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G
Sbjct: 384 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRAT 443
Query: 430 LKDFNKGLV----NNKDIEALKADVEKFASSFDMPGF 462
LK+F + L + + + AL+ +VE FA+ F +PG
Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 480
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/457 (59%), Positives = 325/457 (71%), Gaps = 7/457 (1%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L+ D E++ +I+KE RQ G+ELIASENF S AV+EALGS+L NKYSEG PG RYYGG
Sbjct: 20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGG 79
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
EFIDE+E LC+ RALQ +HLDP WGVNVQPYSGSPANFA YTA++EPH RI GLDLP
Sbjct: 80 TEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLDLPD 139
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG+ T KKISATSI+FES PYKV TGYI+YD+LEE A F PKLII G S
Sbjct: 140 GGHLTHGFXTDK-KKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGTSC 198
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
Y R+ DYAR R +AD GA L D AHISGLVAA +PFE+CH+VTTTTHK+LRG RA
Sbjct: 199 YSRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRA 258
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
G IFYR + Y+ E IN AVFP LQGGPHNH I +AVALKQA T F
Sbjct: 259 GXIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTTEF 318
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
K Y QV AN AL + LT GY +VTGG++NHL+L DLR G G + EK+ + C+I
Sbjct: 319 KIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSIAC 378
Query: 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK--L 429
NKN GD SAL P G+R+GTPA+TSRGLLE+DF+++ F+HR + LTL+IQ
Sbjct: 379 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHXATKAT 438
Query: 430 LKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGF 462
LK+F + L ++ I++ L+ +VE FAS+F +PG
Sbjct: 439 LKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGL 475
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 191/398 (47%), Positives = 249/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 358 bits (919), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 249/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAE----HANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTH++LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 249/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ +AYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 191/402 (47%), Positives = 250/402 (62%), Gaps = 26/402 (6%)
Query: 12 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGG 71
L DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY++G PG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPS 131
E++D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSH 119
Query: 132 GGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191
GGHLTHG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SA
Sbjct: 120 GGHLTHG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA 173
Query: 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA 251
YPR D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR
Sbjct: 174 YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG 233
Query: 252 GMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAF 311
GMI + F +I+ A+FP +QGGP H I A AVA +A F
Sbjct: 234 GMILCQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDF 278
Query: 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITV 371
KAYAK+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITV
Sbjct: 279 KAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITV 338
Query: 372 NKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
NKN + + S G+RIGT A+T+RG ++ ++I +
Sbjct: 339 NKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 357 bits (917), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 249/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNK++EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 357 bits (916), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTH +LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 357 bits (916), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 193/400 (48%), Positives = 251/400 (62%), Gaps = 30/400 (7%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 VFGDSSALAPG---GVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ D +PG G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPE--SPGVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNK
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKAT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RY GG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 356 bits (913), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 248/398 (62%), Gaps = 26/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG R YGG E++
Sbjct: 8 DPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGGCEYV 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L R RA Q F + NVQP+SG+ AN A Y VLE D ++G++L GGHL
Sbjct: 68 DIVEELARERAKQLFGAEHA----NVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + + + Y V+ T IDYD + EKA RPKLI+ SAYPR
Sbjct: 124 THG------SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGPR GMI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ F +I+ A+FP +QGGP H I A AVA +A FKAYA
Sbjct: 238 CQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYA 282
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
K+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D ITVNKN
Sbjct: 283 KRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNT 342
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
+ + S G+RIGT A+T+RG ++ ++I +
Sbjct: 343 IPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAII 380
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 245/402 (60%), Gaps = 25/402 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D + +LI E++RQ G+ELIASENF S V EA+GS LTNKY+EG PG RYYGG E I
Sbjct: 8 DEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVI 67
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E+L RA F W NVQP+SGS AN A Y A++EP D +MG+DL +GGHL
Sbjct: 68 DRVESLAIERAKALFG---AAWA-NVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHL 123
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG +++ + ++ + Y V T ID +++ AL+ RPK+I+ G SAYPR
Sbjct: 124 THG------SRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRF 177
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
WD+ FR +AD+ GA L+ DMAH +GLVAA NP Y H+VT+TTHK+LRGPR G+I
Sbjct: 178 WDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLIL 237
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ +I+ +FP +QGGP H I AVA +A P FK Y+
Sbjct: 238 SNDP--------------ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYS 283
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
+ V NA L L +GY +VTGGT+NHL L DLRP GLTG + E+ D ITVNKNA
Sbjct: 284 RLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNA 343
Query: 376 V-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416
+ F G+RIGTPA+T+RG ++ + E + RA+
Sbjct: 344 IPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRAL 385
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 348 bits (892), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 191/413 (46%), Positives = 245/413 (59%), Gaps = 25/413 (6%)
Query: 1 MDPVNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYS 60
M N + + SL D + I KE RQ +ELIASEN S AV++A GS LTNKY+
Sbjct: 2 MSNANPFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYA 61
Query: 61 EGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP 120
EG PG RYYGG EF DE+E L R + F+ NVQP+SG+ AN A A+ +P
Sbjct: 62 EGYPGKRYYGGCEFADEVEALAIERVKRLFN----AGHANVQPHSGAQANGAVMLALAKP 117
Query: 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF 180
D ++G+ L +GGHLTHG K + + +F +L Y V+ T IDYD++E A
Sbjct: 118 GDTVLGMSLDAGGHLTHG------AKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQH 171
Query: 181 RPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTT 240
+P LII G SAYPR D+ARFRA+AD GA L+ DMAHI+G++AA ANP E+ H+VT+
Sbjct: 172 KPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTS 231
Query: 241 TTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300
TTHK+LRGPR G + + KIN AVFP LQGGP H I A
Sbjct: 232 TTHKTLRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKA 277
Query: 301 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKV 360
VA +A T FK Y +V ANA ALG+ L G LVTGGT+NHL+L DLRP GL G +V
Sbjct: 278 VAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQV 337
Query: 361 EKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
E+ + IT NKN + F G+R+GTPA T+RG +F ++G +
Sbjct: 338 EQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLI 390
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/448 (44%), Positives = 254/448 (56%), Gaps = 44/448 (9%)
Query: 11 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYG 70
SLE D EI DL KE RQC G+E IASENFT V E GS LTNKY+EG PG RYYG
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLP 130
G EF+DEIE L R + F+ NVQP SGS AN Y A++ P D+I+G DL
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCKFA----NVQPNSGSQANQGVYAALINPGDKILGXDLS 120
Query: 131 SGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190
GGHLTHG K+S++ +ES Y V G IDY+K+ E A +PKLI+CG S
Sbjct: 121 HGGHLTHG------AKVSSSGKXYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGAS 173
Query: 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPR 250
AY R D+A+FR +AD+ GA L D+AHI+GLV A E +PF Y H+V++TTHK+LRGPR
Sbjct: 174 AYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR 233
Query: 251 AGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPA 310
G+I + KIN A+FP +QGGP H I A AV K +
Sbjct: 234 GGIIXTNDE--------------ELAKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDE 279
Query: 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNIT 370
+K YAKQV+ NA L N L + + LV+ GT+NHLVL +G + IT
Sbjct: 280 WKVYAKQVRTNAQVLANVLXDRKFKLVSDGTDNHLVLXSFLDREFSGKDADLALGNAGIT 339
Query: 371 VNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 429
NKN V G+ S G+R+GTPA+T+RG EK+ E + ++ +
Sbjct: 340 ANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEXEIVSNYI--------------ADI 385
Query: 430 LKDFNKGLVNNKDIEALKADVEKFASSF 457
L D N N K E +K +++K AS+F
Sbjct: 386 LDDVN----NEKLQENIKQELKKLASNF 409
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 331 bits (849), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 182/416 (43%), Positives = 248/416 (59%), Gaps = 31/416 (7%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D I + IE+E +RQ IELIASENF S AV+EA GS LTNKY+EG PG RYYGG EF+
Sbjct: 11 DKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGGCEFV 70
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D E++ RA F + VNVQP+SG AN A Y LE D ++G++L GGHL
Sbjct: 71 DVTESIAIDRAKALFGAEH----VNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + ++ + Y V+ T I+YD++ + AL+ +PKLI+ G SAY R
Sbjct: 127 THG------APVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRT 180
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+ +F+ +AD+ A L+ DMAHI+GLVAA NP EY VTTTTHK+LRGPR GMI
Sbjct: 181 IDFKKFKEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMIL 240
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ +++ I+ +FP +QGGP H I A AVA +A FK Y
Sbjct: 241 CKE---------------EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQ 285
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLR-PLGLTGNKVEKLCDLCNITVNKN 374
+QV NA L L +G+ +V+GGT+NHLV D++ +GLTG + E+ D IT NKN
Sbjct: 286 QQVVKNAKVLAEALINEGFRIVSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKN 345
Query: 375 AV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKL 429
+ F G+R+GTPA T+RG EK FE++ + ++L L+ K+ KL
Sbjct: 346 TIPFDQEKPFVTSGIRLGTPAATTRGFDEKAFEEVA----KIISLALKNSKDEEKL 397
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 313 bits (802), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/398 (46%), Positives = 246/398 (61%), Gaps = 24/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D E+ +E+EK RQ IELIASEN+TS V++A GS LTNKY+EG PG RYYGG E++
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYV 71
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L RA + F D NVQP+SGS ANFA YTA+LEP D ++G++L GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADYA----NVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
TH G ++ + + +PY ++ +TG+IDY LE++A + +PK+II G SAY
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+ R +AD GA L DMAH++GLVAA NP + H+VTTTTHK+L GPR G+I
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ G + K+N AVFP QGGP H I AVALK+A P FK Y
Sbjct: 241 AK------------GGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQ 288
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
+QV NA A+ +GY +V+GGT+NHL L DL LTG + + NITVNKN+
Sbjct: 289 QQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
Query: 376 VFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
V D S G+R+GTPA+T RG E + +++ ++
Sbjct: 349 VPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 311 bits (798), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 177/414 (42%), Positives = 245/414 (59%), Gaps = 31/414 (7%)
Query: 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 68
++ L VDP+I +L+ KE RQ +E+IASENF AV++A GS LTNKY+EG+PG RY
Sbjct: 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRY 82
Query: 69 YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD 128
YGG E +D +ENL R RA F + NVQP+SG+ AN A A++ P +R++GLD
Sbjct: 83 YGGCEHVDVVENLARDRAKALFGAE----FANVQPHSGAQANAAVLHALMSPGERLLGLD 138
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188
L +GGHLTHG +++ + +E+ Y V+ +T ID D + AL+FRPK+II G
Sbjct: 139 LANGGHLTHGM------RLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAG 192
Query: 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248
SAYPR D+A FR++AD+ GA LL DMAH +GLVAA +P + +V+TT H +L G
Sbjct: 193 WSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGG 252
Query: 249 PRAGMIFYRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308
R+G+I + + IN AVFP QGGP H I AVALK A+T
Sbjct: 253 GRSGLIVGKQ---------------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAAT 297
Query: 309 PAFKAYAKQVKANAVALGNYLTG-----KGYSLVTGGTENHLVLWDLRPLGLTGNKVEKL 363
P F ++ + A + + L G S+V+GGT+ HLVL DLR L G E L
Sbjct: 298 PEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDL 357
Query: 364 CDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416
ITVN+NAV D + G+RIGTPA+ +RG + +F ++ + + A+
Sbjct: 358 LHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATAL 411
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 246/398 (61%), Gaps = 24/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D E+ +E+EK RQ IELIASEN+TS V++A GS LTNKY+EG PG RY+GG E++
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYFGGCEYV 71
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L RA + F D NVQP+SGS ANFA YTA+LEP D ++G++L GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADYA----NVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
TH G ++ + + +PY ++ +TG+IDY LE++A + +PK+II G SAY
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+ R +AD GA L DMAH++GLVAA NP + H+VTTTTHK+L GPR G+I
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ G + K+N AVFP QGGP H I AVALK+A P FK Y
Sbjct: 241 AK------------GGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQ 288
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
+QV NA A+ +GY +V+GGT+NHL L DL LTG + + NITVNKN+
Sbjct: 289 QQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
Query: 376 VFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
V D S G+R+GTPA+T RG E + +++ ++
Sbjct: 349 VPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 183/398 (45%), Positives = 246/398 (61%), Gaps = 24/398 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D E+ +E+EK RQ IELIASEN+TS V++A GS LTNK++EG PG RYYGG E++
Sbjct: 12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYPGKRYYGGCEYV 71
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L RA + F D NVQP+SGS ANFA YTA+LEP D ++G++L GGHL
Sbjct: 72 DIVEQLAIDRAKELFGADYA----NVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHL 127
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
TH G ++ + + +PY ++ +TG+IDY LE++A + +PK+II G SAY
Sbjct: 128 TH------GSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+ R +AD GA L DMAH++GLVAA NP + H+VTTTTHK+L GPR G+I
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ G + K+N AVFP QGGP H I AVALK+A P FK Y
Sbjct: 241 AK------------GGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQ 288
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
+QV NA A+ +GY +V+GGT+NHL L DL LTG + + NITVNKN+
Sbjct: 289 QQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNS 348
Query: 376 VFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412
V D S G+R+GTPA+T RG E + +++ ++
Sbjct: 349 VPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWM 386
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/394 (46%), Positives = 236/394 (59%), Gaps = 24/394 (6%)
Query: 16 DPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFI 75
D E+ E+EK RQ IELIASEN+TS V +A GS LTNKY+EG PG RYYGG E++
Sbjct: 15 DAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKRYYGGCEYV 74
Query: 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL 135
D +E L RA + F D NVQP+SGS ANFA YTA+L+P D ++G +L GGHL
Sbjct: 75 DVVEQLAIDRAKELFGADYA----NVQPHSGSQANFAVYTALLQPGDTVLGXNLAQGGHL 130
Query: 136 THGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195
THG ++ + + +PY ++ S G IDYD+ + A + +PK II G SAY
Sbjct: 131 THG------SPVNFSGKLYNIVPYGIDES-GKIDYDEXAKLAKEHKPKXIIGGFSAYSGV 183
Query: 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIF 255
D+A+ R +AD GA L D AH++GL+AA NP + H+VTTTTHK+L GPR G+I
Sbjct: 184 VDWAKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 243
Query: 256 YRXXXXXXXXXXXEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315
+ G + K+N AVFPS QGGP H I AVALK+A P FK Y
Sbjct: 244 AK------------GGDEELYKKLNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQ 291
Query: 316 KQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA 375
+QV NA A +GY +V+GGTENHL L DL LTG + + NITVNKN+
Sbjct: 292 QQVAKNAKAXVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNS 351
Query: 376 VFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQI 408
V D S G+RIG+PA+T RG E + +++
Sbjct: 352 VPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKEL 385
>pdb|2OX4|A Chain A, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|B Chain B, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|C Chain C, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|D Chain D, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|E Chain E, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|F Chain F, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|G Chain G, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
pdb|2OX4|H Chain H, Crystal Structure Of Putative Dehydratase From Zymomonas
Mobilis Zm4
Length = 403
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 160 KVNSSTGYIDYDKLEEKALD-FRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAH 218
++ S G++ + LE++++D +P L CGG + F+ +AD + AH
Sbjct: 268 RIYSRWGFLPF--LEDRSIDVIQPDLGTCGG--------FTEFKKIADMAHIFEVTVQAH 317
Query: 219 ISGLVAAQEAA 229
++G A+ A+
Sbjct: 318 VAGTGVAEAAS 328
>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|B Chain B, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|C Chain C, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|D Chain D, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|E Chain E, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|F Chain F, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|G Chain G, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|H Chain H, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|I Chain I, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
pdb|2PN8|J Chain J, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin
Peroxidase)
Length = 211
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 142 SGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYA 199
S G + ++YF+S+P T ID + E K D+R K ++ YP D+ +
Sbjct: 8 SSGVDLGTENLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVF--FFYPLDFTFV 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,904,565
Number of Sequences: 62578
Number of extensions: 638016
Number of successful extensions: 1908
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 30
length of query: 471
length of database: 14,973,337
effective HSP length: 102
effective length of query: 369
effective length of database: 8,590,381
effective search space: 3169850589
effective search space used: 3169850589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)