Query 012104
Match_columns 471
No_of_seqs 326 out of 3129
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 21:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ou5_A Serine hydroxymethyltra 100.0 3E-112 9E-117 841.7 36.9 453 9-464 32-489 (490)
2 2a7v_A Serine hydroxymethyltra 100.0 1.1E-77 3.9E-82 620.7 36.7 452 10-464 33-489 (490)
3 1rv3_A Serine hydroxymethyltra 100.0 1.8E-68 6.1E-73 555.8 41.0 460 3-464 16-482 (483)
4 3h7f_A Serine hydroxymethyltra 100.0 1.8E-55 6.3E-60 453.9 38.0 417 7-467 21-444 (447)
5 3n0l_A Serine hydroxymethyltra 100.0 4.5E-51 1.5E-55 416.3 40.9 408 11-461 5-413 (417)
6 3ecd_A Serine hydroxymethyltra 100.0 1.6E-48 5.3E-53 398.3 38.0 418 6-460 7-425 (425)
7 3gbx_A Serine hydroxymethyltra 100.0 1.7E-48 6E-53 397.3 38.2 415 6-461 3-420 (420)
8 2vi8_A Serine hydroxymethyltra 100.0 3.1E-42 1E-46 349.6 37.8 402 10-454 2-404 (405)
9 2dkj_A Serine hydroxymethyltra 100.0 3.8E-42 1.3E-46 349.1 36.7 402 13-460 5-407 (407)
10 3nnk_A Ureidoglycine-glyoxylat 100.0 1.6E-28 5.6E-33 248.9 31.4 334 32-419 13-390 (411)
11 3zrp_A Serine-pyruvate aminotr 100.0 9.8E-29 3.4E-33 247.9 28.8 331 33-419 3-363 (384)
12 3isl_A Purine catabolism prote 100.0 6E-28 2E-32 245.2 33.6 350 32-419 11-390 (416)
13 2dr1_A PH1308 protein, 386AA l 100.0 4.4E-28 1.5E-32 243.5 32.1 332 33-419 21-379 (386)
14 3f0h_A Aminotransferase; RER07 100.0 4.4E-28 1.5E-32 242.9 29.3 333 31-418 18-373 (376)
15 2huf_A Alanine glyoxylate amin 100.0 7.2E-28 2.4E-32 242.8 30.7 334 32-418 19-382 (393)
16 1iug_A Putative aspartate amin 100.0 4.9E-28 1.7E-32 240.1 28.9 337 34-418 3-347 (352)
17 3tqx_A 2-amino-3-ketobutyrate 100.0 2.9E-28 9.8E-33 246.1 27.4 333 34-418 46-395 (399)
18 1m32_A 2-aminoethylphosphonate 100.0 5.8E-28 2E-32 240.5 27.6 344 33-417 5-363 (366)
19 3dzz_A Putative pyridoxal 5'-p 100.0 5.9E-28 2E-32 243.1 27.8 338 32-418 28-388 (391)
20 1vjo_A Alanine--glyoxylate ami 100.0 1.4E-27 4.7E-32 240.9 30.2 329 33-416 35-392 (393)
21 3kgw_A Alanine-glyoxylate amin 100.0 9.3E-28 3.2E-32 241.6 28.9 334 32-418 23-387 (393)
22 2yrr_A Aminotransferase, class 100.0 1.1E-27 3.6E-32 237.4 28.6 329 34-417 2-351 (353)
23 3h14_A Aminotransferase, class 100.0 2.2E-27 7.6E-32 239.4 31.3 352 18-419 18-382 (391)
24 2z9v_A Aspartate aminotransfer 100.0 2.8E-27 9.7E-32 238.4 31.3 328 37-419 14-371 (392)
25 2w8t_A SPT, serine palmitoyltr 100.0 3.1E-27 1.1E-31 241.6 30.4 334 34-419 67-415 (427)
26 3f9t_A TDC, L-tyrosine decarbo 100.0 2.4E-26 8.1E-31 231.3 36.2 347 17-417 13-396 (397)
27 3ly1_A Putative histidinol-pho 100.0 6E-27 2E-31 232.8 30.6 321 31-418 16-351 (354)
28 2ch1_A 3-hydroxykynurenine tra 100.0 3.4E-27 1.2E-31 238.1 28.9 334 32-418 18-382 (396)
29 1kmj_A Selenocysteine lyase; p 100.0 8.5E-27 2.9E-31 235.6 31.7 343 33-417 24-403 (406)
30 3ffh_A Histidinol-phosphate am 100.0 1.5E-26 5E-31 231.0 33.0 339 9-415 7-362 (363)
31 4hvk_A Probable cysteine desul 100.0 2.9E-27 1E-31 236.6 27.9 338 39-419 8-373 (382)
32 4dq6_A Putative pyridoxal phos 100.0 3.7E-27 1.3E-31 237.3 28.7 350 15-416 17-390 (391)
33 1gd9_A Aspartate aminotransfer 100.0 4.3E-27 1.5E-31 237.1 28.9 359 13-418 8-385 (389)
34 3euc_A Histidinol-phosphate am 100.0 8.8E-27 3E-31 232.9 30.9 323 31-417 30-366 (367)
35 3get_A Histidinol-phosphate am 100.0 2.9E-27 1E-31 236.2 27.4 319 31-416 30-364 (365)
36 4eb5_A Probable cysteine desul 100.0 2.9E-27 9.8E-32 237.2 27.2 336 40-419 9-373 (382)
37 1fc4_A 2-amino-3-ketobutyrate 100.0 1.6E-27 5.6E-32 241.1 25.5 333 33-418 47-396 (401)
38 1t3i_A Probable cysteine desul 100.0 6.6E-27 2.3E-31 237.6 30.1 344 33-418 29-412 (420)
39 3kax_A Aminotransferase, class 100.0 3.5E-27 1.2E-31 236.9 27.5 336 31-416 24-382 (383)
40 3hbx_A GAD 1, glutamate decarb 100.0 4E-26 1.4E-30 238.0 35.3 365 17-420 40-445 (502)
41 1b5p_A Protein (aspartate amin 100.0 1.1E-26 3.8E-31 234.1 29.5 335 31-416 31-382 (385)
42 3fvs_A Kynurenine--oxoglutarat 100.0 6.1E-27 2.1E-31 238.5 26.4 369 5-417 3-420 (422)
43 2gb3_A Aspartate aminotransfer 100.0 8.3E-27 2.8E-31 236.9 27.2 339 31-418 43-401 (409)
44 1c7n_A Cystalysin; transferase 100.0 1.1E-26 3.7E-31 234.9 27.8 339 31-418 31-392 (399)
45 1v2d_A Glutamine aminotransfer 100.0 1.6E-26 5.6E-31 232.2 28.7 352 9-419 4-371 (381)
46 1bs0_A Protein (8-amino-7-oxon 100.0 5.4E-27 1.8E-31 235.9 25.1 332 32-415 40-383 (384)
47 3cai_A Possible aminotransfera 100.0 1.1E-26 3.9E-31 235.2 27.7 337 33-414 27-404 (406)
48 3l8a_A METC, putative aminotra 100.0 8.3E-27 2.8E-31 237.8 26.6 339 30-417 60-420 (421)
49 1j32_A Aspartate aminotransfer 100.0 3.7E-26 1.3E-30 230.1 30.9 338 30-417 29-385 (388)
50 3lvm_A Cysteine desulfurase; s 100.0 3.3E-26 1.1E-30 233.1 30.6 350 26-420 16-400 (423)
51 2o0r_A RV0858C (N-succinyldiam 100.0 1.8E-26 6.2E-31 234.5 28.1 364 10-418 5-395 (411)
52 3dr4_A Putative perosamine syn 100.0 1.2E-27 4.1E-32 241.5 19.2 332 32-416 23-390 (391)
53 1u08_A Hypothetical aminotrans 100.0 4.4E-26 1.5E-30 229.5 30.2 359 9-413 9-384 (386)
54 3dyd_A Tyrosine aminotransfera 100.0 4.5E-26 1.5E-30 232.9 30.5 339 32-418 55-423 (427)
55 3hvy_A Cystathionine beta-lyas 100.0 3.2E-27 1.1E-31 240.1 21.4 293 14-351 15-340 (427)
56 3p1t_A Putative histidinol-pho 100.0 7E-26 2.4E-30 223.4 30.3 321 23-417 8-335 (337)
57 3nra_A Aspartate aminotransfer 100.0 9.5E-27 3.2E-31 235.7 24.6 340 33-418 41-404 (407)
58 1eg5_A Aminotransferase; PLP-d 100.0 6.5E-26 2.2E-30 227.3 30.4 336 41-418 11-375 (384)
59 1o4s_A Aspartate aminotransfer 100.0 3.7E-26 1.3E-30 230.6 28.5 331 31-417 41-387 (389)
60 3ffr_A Phosphoserine aminotran 100.0 2E-26 7E-31 229.1 26.1 345 32-416 4-361 (362)
61 2dou_A Probable N-succinyldiam 100.0 2.5E-26 8.4E-31 230.5 26.8 337 31-416 25-375 (376)
62 2bkw_A Alanine-glyoxylate amin 99.9 7.5E-26 2.6E-30 227.1 29.9 351 31-417 4-382 (385)
63 3a2b_A Serine palmitoyltransfe 99.9 2E-26 7E-31 232.9 25.7 332 33-418 45-391 (398)
64 1elu_A L-cysteine/L-cystine C- 99.9 1.5E-26 5.2E-31 232.6 24.4 345 33-414 17-387 (390)
65 3kki_A CAI-1 autoinducer synth 99.9 7.7E-26 2.6E-30 229.7 29.1 320 44-418 75-403 (409)
66 3g0t_A Putative aminotransfera 99.9 3.9E-26 1.3E-30 233.6 27.0 341 31-417 44-435 (437)
67 1d2f_A MALY protein; aminotran 99.9 2.1E-25 7E-30 224.9 31.0 337 31-417 28-387 (390)
68 2z61_A Probable aspartate amin 99.9 6.1E-26 2.1E-30 227.2 26.7 330 30-417 28-369 (370)
69 3fdb_A Beta C-S lyase, putativ 99.9 1.2E-25 4.1E-30 225.2 27.9 335 31-417 23-374 (377)
70 1yiz_A Kynurenine aminotransfe 99.9 1.8E-25 6.1E-30 228.3 29.5 366 9-417 16-427 (429)
71 2x5d_A Probable aminotransfera 99.9 2.3E-25 7.8E-30 226.4 30.1 341 31-419 37-398 (412)
72 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 8.9E-27 3E-31 232.8 19.1 334 32-418 8-369 (371)
73 1xi9_A Putative transaminase; 99.9 7.1E-26 2.4E-30 229.7 26.0 343 31-418 38-402 (406)
74 1b9h_A AHBA synthase, protein 99.9 1E-25 3.6E-30 226.9 26.9 323 43-417 15-386 (388)
75 2zc0_A Alanine glyoxylate tran 99.9 5.2E-25 1.8E-29 223.2 31.4 373 1-418 1-403 (407)
76 3ele_A Amino transferase; RER0 99.9 3.9E-25 1.3E-29 223.4 30.3 338 31-418 35-395 (398)
77 3cq5_A Histidinol-phosphate am 99.9 1.1E-24 3.8E-29 218.0 33.2 320 33-417 32-366 (369)
78 1mdo_A ARNB aminotransferase; 99.9 7.3E-26 2.5E-30 228.2 24.6 329 33-419 10-386 (393)
79 3ke3_A Putative serine-pyruvat 99.9 5.5E-26 1.9E-30 228.6 23.0 320 71-418 30-375 (379)
80 3e2y_A Kynurenine-oxoglutarate 99.9 1.2E-25 4E-30 228.0 24.9 360 11-414 4-408 (410)
81 2dgk_A GAD-beta, GADB, glutama 99.9 3.1E-24 1.1E-28 220.9 35.8 364 17-419 26-434 (452)
82 3jtx_A Aminotransferase; NP_28 99.9 3.1E-25 1.1E-29 223.8 27.8 353 13-416 7-395 (396)
83 2o1b_A Aminotransferase, class 99.9 1.2E-25 4E-30 228.1 24.6 339 32-417 48-401 (404)
84 2zyj_A Alpha-aminodipate amino 99.9 4.8E-25 1.6E-29 222.8 28.9 359 8-418 10-392 (397)
85 3hdo_A Histidinol-phosphate am 99.9 7.4E-25 2.5E-29 218.5 29.7 317 31-417 26-353 (360)
86 3aow_A Putative uncharacterize 99.9 1.2E-24 4.2E-29 223.7 32.0 343 30-418 75-444 (448)
87 3vax_A Putative uncharacterize 99.9 1.8E-26 6.1E-31 233.2 17.3 341 39-417 28-398 (400)
88 3b46_A Aminotransferase BNA3; 99.9 1.8E-25 6.3E-30 229.8 24.1 357 15-414 33-442 (447)
89 2r2n_A Kynurenine/alpha-aminoa 99.9 3E-24 1E-28 219.2 32.6 305 78-418 83-423 (425)
90 1o69_A Aminotransferase; struc 99.9 5.6E-25 1.9E-29 222.4 26.8 326 40-418 7-386 (394)
91 3ju7_A Putative PLP-dependent 99.9 1.1E-25 3.7E-30 226.4 21.0 321 43-419 14-375 (377)
92 3i16_A Aluminum resistance pro 99.9 1.6E-25 5.5E-30 227.5 22.4 310 15-369 18-357 (427)
93 2c81_A Glutamine-2-deoxy-scyll 99.9 5.3E-25 1.8E-29 224.2 25.9 332 40-418 11-413 (418)
94 3mc6_A Sphingosine-1-phosphate 99.9 1.7E-25 5.9E-30 233.0 22.4 328 44-419 77-437 (497)
95 3ezs_A Aminotransferase ASPB; 99.9 1.6E-24 5.6E-29 217.0 28.6 328 32-417 24-373 (376)
96 2bwn_A 5-aminolevulinate synth 99.9 8.6E-25 2.9E-29 221.2 26.4 321 44-417 62-398 (401)
97 3a9z_A Selenocysteine lyase; P 99.9 9.5E-25 3.2E-29 223.1 26.6 350 32-418 18-427 (432)
98 3uwc_A Nucleotide-sugar aminot 99.9 5.6E-26 1.9E-30 227.5 16.5 329 32-418 7-370 (374)
99 3frk_A QDTB; aminotransferase, 99.9 1.8E-26 6.3E-31 231.3 12.9 317 42-417 14-366 (373)
100 2c0r_A PSAT, phosphoserine ami 99.9 3.7E-25 1.3E-29 220.8 22.3 339 32-417 4-359 (362)
101 1bw0_A TAT, protein (tyrosine 99.9 2.5E-24 8.7E-29 218.8 28.6 341 31-418 33-412 (416)
102 2oga_A Transaminase; PLP-depen 99.9 4.2E-25 1.4E-29 223.6 22.7 331 31-418 30-395 (399)
103 3qgu_A LL-diaminopimelate amin 99.9 1.5E-24 5E-29 222.9 27.0 342 31-418 69-439 (449)
104 1c4k_A Protein (ornithine deca 99.9 8.7E-25 3E-29 235.3 25.9 304 82-419 178-566 (730)
105 2po3_A 4-dehydrase; external a 99.9 1.7E-24 5.8E-29 220.9 26.8 332 35-422 20-389 (424)
106 3rq1_A Aminotransferase class 99.9 8.1E-25 2.8E-29 222.7 24.2 350 13-418 15-414 (418)
107 1jg8_A L-ALLO-threonine aldola 99.9 5.9E-25 2E-29 217.8 22.5 324 33-417 5-344 (347)
108 1vp4_A Aminotransferase, putat 99.9 1.4E-24 4.8E-29 221.6 25.9 342 30-418 42-417 (425)
109 3m5u_A Phosphoserine aminotran 99.9 4.1E-25 1.4E-29 219.9 21.3 342 32-418 5-359 (361)
110 1iay_A ACC synthase 2, 1-amino 99.9 4.4E-24 1.5E-28 218.0 28.9 341 32-418 37-426 (428)
111 3piu_A 1-aminocyclopropane-1-c 99.9 2.8E-24 9.5E-29 220.0 27.4 345 33-418 40-431 (435)
112 3vp6_A Glutamate decarboxylase 99.9 6.4E-24 2.2E-28 221.8 30.2 311 72-416 130-502 (511)
113 1wyu_B Glycine dehydrogenase s 99.9 1.5E-23 5.2E-28 217.1 32.8 327 43-418 78-440 (474)
114 2fnu_A Aminotransferase; prote 99.9 5.8E-25 2E-29 220.0 21.2 323 39-418 7-371 (375)
115 3qm2_A Phosphoserine aminotran 99.9 1.5E-25 5.1E-30 225.0 16.8 344 33-418 28-384 (386)
116 3if2_A Aminotransferase; YP_26 99.9 3.5E-24 1.2E-28 219.7 27.4 360 29-418 29-439 (444)
117 3op7_A Aminotransferase class 99.9 3E-24 1E-28 215.1 25.1 288 84-418 70-370 (375)
118 3nyt_A Aminotransferase WBPE; 99.9 9.7E-26 3.3E-30 225.7 13.7 315 40-414 11-359 (367)
119 1qz9_A Kynureninase; kynurenin 99.9 4.6E-24 1.6E-28 216.7 25.7 341 33-418 29-401 (416)
120 3ppl_A Aspartate aminotransfer 99.9 2.6E-24 8.9E-29 219.7 23.9 296 83-419 84-420 (427)
121 3ez1_A Aminotransferase MOCR f 99.9 4.3E-24 1.5E-28 217.7 25.3 359 11-419 6-415 (423)
122 3e77_A Phosphoserine aminotran 99.9 1.6E-24 5.4E-29 216.4 21.5 338 38-418 19-374 (377)
123 3e9k_A Kynureninase; kynurenin 99.9 1.6E-24 5.6E-29 223.7 22.4 307 82-418 116-460 (465)
124 3mad_A Sphingosine-1-phosphate 99.9 2.7E-23 9.3E-28 217.4 30.8 304 73-419 135-469 (514)
125 1v72_A Aldolase; PLP-dependent 99.9 1.4E-23 4.7E-28 208.3 26.7 324 32-418 8-352 (356)
126 2aeu_A Hypothetical protein MJ 99.9 1.2E-23 4.1E-28 211.2 26.2 334 18-419 13-371 (374)
127 3t18_A Aminotransferase class 99.9 6E-24 2.1E-28 215.9 23.7 332 14-396 15-395 (413)
128 2x5f_A Aspartate_tyrosine_phen 99.9 3.9E-24 1.3E-28 218.5 22.2 339 30-418 46-428 (430)
129 2vyc_A Biodegradative arginine 99.9 9.5E-24 3.2E-28 229.1 25.8 298 82-419 210-605 (755)
130 3d6k_A Putative aminotransfera 99.9 6.8E-24 2.3E-28 216.4 23.1 361 6-418 8-417 (422)
131 3jzl_A Putative cystathionine 99.9 1.6E-23 5.4E-28 212.1 25.4 307 17-369 6-340 (409)
132 3ei9_A LL-diaminopimelate amin 99.9 2.2E-23 7.5E-28 213.1 26.1 340 32-414 57-423 (432)
133 3ftb_A Histidinol-phosphate am 99.9 1.2E-22 4.2E-27 202.1 30.8 318 31-417 26-359 (361)
134 1fg7_A Histidinol phosphate am 99.9 3E-23 1E-27 206.7 26.1 277 83-414 64-353 (356)
135 4e1o_A HDC, histidine decarbox 99.9 2.4E-23 8.2E-28 216.0 25.6 323 72-418 113-477 (481)
136 3pj0_A LMO0305 protein; struct 99.9 3.1E-24 1E-28 213.6 17.8 333 28-415 10-358 (359)
137 3tcm_A Alanine aminotransferas 99.9 1.3E-22 4.3E-27 211.5 30.8 304 76-418 137-493 (500)
138 3n75_A LDC, lysine decarboxyla 99.9 9.4E-24 3.2E-28 225.5 22.3 292 82-418 200-559 (715)
139 1w23_A Phosphoserine aminotran 99.9 7E-24 2.4E-28 211.0 20.0 328 32-417 3-358 (360)
140 1lc5_A COBD, L-threonine-O-3-p 99.9 1E-22 3.4E-27 203.4 28.3 320 32-418 25-359 (364)
141 3b8x_A WBDK, pyridoxamine 5-ph 99.9 1.4E-22 4.9E-27 204.2 29.2 317 38-412 8-389 (390)
142 3k40_A Aromatic-L-amino-acid d 99.9 3.7E-23 1.3E-27 214.1 25.0 319 71-418 107-470 (475)
143 3g7q_A Valine-pyruvate aminotr 99.9 2.9E-23 9.9E-28 210.9 23.4 361 18-418 16-412 (417)
144 1svv_A Threonine aldolase; str 99.9 9.2E-23 3.2E-27 202.4 25.0 321 33-417 15-356 (359)
145 2okj_A Glutamate decarboxylase 99.9 5.2E-22 1.8E-26 207.1 30.9 309 73-417 128-500 (504)
146 2qma_A Diaminobutyrate-pyruvat 99.9 4.1E-22 1.4E-26 207.5 29.5 333 42-417 111-494 (497)
147 3b1d_A Betac-S lyase; HET: PLP 99.8 6.7E-26 2.3E-30 228.8 0.0 337 32-417 32-391 (392)
148 3ihj_A Alanine aminotransferas 99.9 1.9E-22 6.3E-27 210.1 25.8 303 77-418 133-492 (498)
149 2x3l_A ORN/Lys/Arg decarboxyla 99.9 9.5E-24 3.2E-28 216.9 15.5 282 82-418 62-352 (446)
150 3lws_A Aromatic amino acid bet 99.9 3.6E-23 1.2E-27 205.8 19.3 329 35-416 14-356 (357)
151 2fyf_A PSAT, phosphoserine ami 99.9 1.8E-22 6.3E-27 204.0 24.0 328 31-417 39-396 (398)
152 3asa_A LL-diaminopimelate amin 99.9 1.3E-22 4.3E-27 205.4 22.8 335 31-418 33-392 (400)
153 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.3E-22 4.5E-27 208.8 23.2 324 42-419 55-431 (456)
154 2jis_A Cysteine sulfinic acid 99.9 6.9E-22 2.4E-26 206.8 28.3 308 73-417 144-513 (515)
155 3fkd_A L-threonine-O-3-phospha 99.9 4.4E-22 1.5E-26 197.5 25.4 314 31-418 15-341 (350)
156 3ht4_A Aluminum resistance pro 99.9 5.8E-23 2E-27 209.6 19.2 315 13-368 8-345 (431)
157 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 3.7E-22 1.3E-26 204.5 24.4 323 39-417 37-434 (437)
158 1uu1_A Histidinol-phosphate am 99.9 2.3E-22 8E-27 198.4 22.1 303 32-414 20-333 (335)
159 3f6t_A Aspartate aminotransfer 99.9 6.8E-22 2.3E-26 207.4 26.8 339 34-419 106-525 (533)
160 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.2E-22 4.2E-27 209.2 20.3 300 75-416 131-455 (456)
161 7aat_A Aspartate aminotransfer 99.9 4.6E-22 1.6E-26 201.1 23.8 347 12-416 7-400 (401)
162 3ruy_A Ornithine aminotransfer 99.9 7.6E-22 2.6E-26 198.9 25.2 312 43-416 53-391 (392)
163 4f4e_A Aromatic-amino-acid ami 99.9 2.7E-22 9.1E-27 204.4 21.7 351 10-416 26-419 (420)
164 1gc0_A Methionine gamma-lyase; 99.9 1E-21 3.4E-26 198.8 25.2 325 33-415 29-397 (398)
165 1yaa_A Aspartate aminotransfer 99.9 3.7E-22 1.3E-26 202.6 21.7 346 11-417 7-409 (412)
166 1js3_A DDC;, DOPA decarboxylas 99.9 1.2E-21 4.1E-26 203.4 24.2 332 45-418 88-473 (486)
167 2oat_A Ornithine aminotransfer 99.9 8.1E-21 2.8E-25 194.7 27.9 312 43-417 93-437 (439)
168 3meb_A Aspartate aminotransfer 99.9 3.9E-21 1.3E-25 197.6 25.2 348 11-417 27-442 (448)
169 2eh6_A Acoat, acetylornithine 99.9 1.1E-20 3.7E-25 189.1 27.5 303 43-415 45-374 (375)
170 3k7y_A Aspartate aminotransfer 99.9 2.3E-21 8E-26 196.3 22.7 346 11-417 7-403 (405)
171 2rfv_A Methionine gamma-lyase; 99.9 7.9E-22 2.7E-26 199.5 19.2 282 83-415 70-396 (398)
172 1ax4_A Tryptophanase; tryptoph 99.9 3.9E-21 1.3E-25 198.3 24.4 328 45-419 55-441 (467)
173 1pff_A Methionine gamma-lyase; 99.9 2.4E-21 8.2E-26 190.7 21.4 282 83-415 4-330 (331)
174 1qgn_A Protein (cystathionine 99.9 5E-21 1.7E-25 195.9 24.4 286 72-417 113-443 (445)
175 2cb1_A O-acetyl homoserine sul 99.9 6.4E-20 2.2E-24 186.4 32.4 294 83-414 62-411 (412)
176 1e5e_A MGL, methionine gamma-l 99.9 1.7E-20 5.7E-25 190.2 28.0 288 71-418 60-394 (404)
177 4eu1_A Mitochondrial aspartate 99.9 2.1E-21 7.3E-26 196.9 21.1 343 10-416 18-408 (409)
178 3fsl_A Aromatic-amino-acid ami 99.9 2.3E-21 8E-26 195.5 21.1 348 12-415 5-396 (397)
179 2fq6_A Cystathionine beta-lyas 99.9 2.2E-21 7.5E-26 197.1 20.8 289 71-414 80-413 (415)
180 3qhx_A Cystathionine gamma-syn 99.9 6.4E-21 2.2E-25 192.5 23.5 281 83-412 72-391 (392)
181 1ajs_A Aspartate aminotransfer 99.9 5E-21 1.7E-25 194.2 22.5 346 11-417 8-409 (412)
182 1z7d_A Ornithine aminotransfer 99.9 2.6E-20 9E-25 190.5 28.0 313 43-418 82-428 (433)
183 1wyu_A Glycine dehydrogenase ( 99.9 2.2E-20 7.6E-25 191.3 26.8 299 77-416 108-437 (438)
184 1vef_A Acetylornithine/acetyl- 99.9 1.6E-20 5.6E-25 189.3 25.2 314 42-416 61-394 (395)
185 2zy4_A L-aspartate beta-decarb 99.9 7.8E-21 2.7E-25 199.7 23.2 339 33-419 106-522 (546)
186 3ri6_A O-acetylhomoserine sulf 99.9 3.6E-21 1.2E-25 196.2 19.7 302 71-416 80-429 (430)
187 3ndn_A O-succinylhomoserine su 99.9 6E-21 2.1E-25 194.0 21.1 289 72-416 80-413 (414)
188 3cog_A Cystathionine gamma-lya 99.9 9.8E-21 3.3E-25 191.9 21.3 288 73-416 67-399 (403)
189 2q7w_A Aspartate aminotransfer 99.9 8E-21 2.7E-25 191.5 20.4 325 31-415 26-395 (396)
190 2oqx_A Tryptophanase; lyase, p 99.9 1.6E-20 5.3E-25 193.8 22.9 333 45-419 53-442 (467)
191 1s0a_A Adenosylmethionine-8-am 99.9 2.2E-19 7.6E-24 183.2 30.9 324 43-417 60-422 (429)
192 4adb_A Succinylornithine trans 99.9 6E-20 2.1E-24 185.7 24.8 320 43-419 56-400 (406)
193 2ord_A Acoat, acetylornithine 99.9 4.8E-20 1.6E-24 186.1 23.6 308 43-417 57-395 (397)
194 1cs1_A CGS, protein (cystathio 99.9 1.2E-19 3.9E-24 182.8 26.1 282 83-415 58-383 (386)
195 2ay1_A Aroat, aromatic amino a 99.9 9.7E-21 3.3E-25 190.8 18.2 322 31-415 26-392 (394)
196 1sff_A 4-aminobutyrate aminotr 99.9 1.3E-19 4.3E-24 184.6 25.8 322 43-418 58-423 (426)
197 2eo5_A 419AA long hypothetical 99.8 1.2E-19 4.2E-24 184.7 25.4 330 33-418 44-417 (419)
198 1n8p_A Cystathionine gamma-lya 99.8 5.2E-20 1.8E-24 185.9 22.4 282 83-415 61-391 (393)
199 2pb2_A Acetylornithine/succiny 99.8 1.5E-19 5E-24 184.2 24.7 311 43-418 74-417 (420)
200 3a8u_X Omega-amino acid--pyruv 99.8 1.8E-19 6E-24 185.1 25.1 320 43-418 67-446 (449)
201 4h51_A Aspartate aminotransfer 99.8 1.6E-19 5.6E-24 183.1 23.6 352 12-418 24-416 (420)
202 3i4j_A Aminotransferase, class 99.8 1.1E-18 3.8E-23 178.0 29.0 325 44-418 47-427 (430)
203 3acz_A Methionine gamma-lyase; 99.8 7.2E-19 2.4E-23 177.3 25.0 250 72-373 58-330 (389)
204 1ibj_A CBL, cystathionine beta 99.8 1.3E-19 4.5E-24 186.6 19.7 280 82-417 138-460 (464)
205 1zod_A DGD, 2,2-dialkylglycine 99.8 1.4E-18 4.8E-23 177.4 25.5 328 43-417 60-430 (433)
206 3dxv_A Alpha-amino-epsilon-cap 99.8 1.5E-18 5E-23 177.6 24.7 321 43-419 60-425 (439)
207 2ctz_A O-acetyl-L-homoserine s 99.8 6.8E-19 2.3E-23 179.4 21.7 190 35-256 24-221 (421)
208 3nx3_A Acoat, acetylornithine 99.8 5E-18 1.7E-22 171.1 27.7 325 33-417 38-393 (395)
209 3nmy_A Xometc, cystathionine g 99.8 4.2E-19 1.4E-23 179.6 19.5 213 71-332 65-285 (400)
210 3tfu_A Adenosylmethionine-8-am 99.8 4.2E-18 1.4E-22 175.3 27.0 323 43-418 92-452 (457)
211 3gju_A Putative aminotransfera 99.8 2.3E-17 8E-22 169.9 29.9 328 44-418 69-455 (460)
212 3dod_A Adenosylmethionine-8-am 99.8 2.2E-17 7.7E-22 169.4 28.4 319 43-419 61-443 (448)
213 2cjg_A L-lysine-epsilon aminot 99.8 7.9E-18 2.7E-22 172.9 24.7 315 43-418 71-447 (449)
214 3bwn_A AT1G70560, L-tryptophan 99.8 1.2E-18 4.2E-23 175.7 17.5 255 100-417 93-385 (391)
215 3l44_A Glutamate-1-semialdehyd 99.8 5.7E-17 2E-21 165.5 30.1 315 43-418 72-429 (434)
216 3n5m_A Adenosylmethionine-8-am 99.8 6.7E-17 2.3E-21 166.0 30.5 328 44-417 67-450 (452)
217 3fq8_A Glutamate-1-semialdehyd 99.8 5.7E-17 1.9E-21 165.2 29.5 307 43-417 69-425 (427)
218 3hl2_A O-phosphoseryl-tRNA(SEC 99.8 9.6E-18 3.3E-22 167.3 22.7 309 77-420 117-462 (501)
219 2epj_A Glutamate-1-semialdehyd 99.8 9.3E-18 3.2E-22 171.5 23.4 315 43-418 73-430 (434)
220 4a6r_A Omega transaminase; tra 99.8 1.8E-17 6.1E-22 170.8 24.6 326 44-419 68-449 (459)
221 3bc8_A O-phosphoseryl-tRNA(SEC 99.8 5E-18 1.7E-22 171.5 18.6 309 75-418 96-442 (450)
222 3i5t_A Aminotransferase; pyrid 99.8 2.6E-16 9E-21 162.7 31.8 327 43-419 71-454 (476)
223 2cy8_A D-phgat, D-phenylglycin 99.8 3.2E-17 1.1E-21 168.5 23.8 313 43-419 74-435 (453)
224 2e7u_A Glutamate-1-semialdehyd 99.8 2.6E-17 8.7E-22 167.7 22.2 322 33-415 54-423 (424)
225 3k28_A Glutamate-1-semialdehyd 99.8 1.7E-16 5.7E-21 161.9 26.9 311 43-418 70-426 (429)
226 3hmu_A Aminotransferase, class 99.8 1.2E-16 4.2E-21 165.0 25.9 319 44-419 73-452 (472)
227 2hox_A ALLIIN lyase 1; cystein 99.8 2.8E-18 9.4E-23 175.2 11.9 321 32-417 57-423 (427)
228 4ffc_A 4-aminobutyrate aminotr 99.7 1.4E-16 4.6E-21 163.9 24.2 329 43-418 81-448 (453)
229 3oks_A 4-aminobutyrate transam 99.7 1.1E-16 3.8E-21 164.4 23.4 328 44-417 79-449 (451)
230 4e77_A Glutamate-1-semialdehyd 99.7 8.5E-16 2.9E-20 156.6 29.4 315 43-417 70-427 (429)
231 1ohv_A 4-aminobutyrate aminotr 99.7 1.1E-15 3.9E-20 157.8 23.3 317 43-418 80-470 (472)
232 4ao9_A Beta-phenylalanine amin 99.5 7E-12 2.4E-16 127.7 29.5 308 44-419 105-446 (454)
233 2yky_A Beta-transaminase; tran 99.3 7.1E-16 2.4E-20 158.1 0.0 318 32-418 101-459 (465)
234 4atq_A 4-aminobutyrate transam 99.3 2.1E-09 7.2E-14 109.8 28.5 330 44-418 82-454 (456)
235 4e3q_A Pyruvate transaminase; 99.1 3.9E-08 1.3E-12 100.8 27.9 327 44-419 85-468 (473)
236 4a0g_A Adenosylmethionine-8-am 99.1 6.5E-09 2.2E-13 113.7 20.5 209 171-418 577-827 (831)
237 1xrs_B D-lysine 5,6-aminomutas 63.8 17 0.00057 33.4 7.2 57 153-214 157-220 (262)
238 2yxb_A Coenzyme B12-dependent 61.0 12 0.00041 31.5 5.3 53 152-209 45-97 (161)
239 1y80_A Predicted cobalamin bin 53.7 23 0.00079 31.0 6.2 61 151-216 114-178 (210)
240 1ccw_A Protein (glutamate muta 52.0 18 0.00061 29.5 4.8 54 151-209 29-82 (137)
241 1ge9_A Ribosome recycling fact 45.0 1.5E+02 0.005 25.4 9.7 85 357-457 78-166 (184)
242 3ezx_A MMCP 1, monomethylamine 43.9 30 0.001 30.5 5.3 61 150-215 117-183 (215)
243 4gfq_A Ribosome-recycling fact 41.6 1.4E+02 0.0047 26.2 8.9 88 357-457 99-191 (209)
244 1wqg_A Ribosome recycling fact 39.4 1.8E+02 0.0061 24.9 9.3 88 357-457 75-167 (185)
245 1ise_A Ribosome recycling fact 38.7 1.6E+02 0.0055 25.2 8.8 88 357-457 75-167 (185)
246 1vc3_B L-aspartate-alpha-decar 37.7 53 0.0018 24.9 4.9 14 177-190 74-87 (96)
247 1uhe_A Aspartate 1-decarboxyla 37.3 56 0.0019 24.8 4.9 13 178-190 73-85 (97)
248 1dd5_A Ribosome recycling fact 36.6 2E+02 0.0069 24.6 10.3 88 357-457 75-167 (185)
249 1is1_A Ribosome recycling fact 36.6 2E+02 0.0069 24.6 10.5 88 357-457 75-167 (185)
250 3plx_B Aspartate 1-decarboxyla 34.6 63 0.0022 24.7 4.9 12 178-189 74-85 (102)
251 2i2x_B MTAC, methyltransferase 33.5 56 0.0019 29.6 5.5 77 121-209 123-202 (258)
252 3v7e_A Ribosome-associated pro 33.1 57 0.0019 23.8 4.5 45 170-216 16-60 (82)
253 3nvt_A 3-deoxy-D-arabino-heptu 32.7 30 0.001 33.6 3.7 57 165-221 256-323 (385)
254 3bzy_B ESCU; auto cleavage pro 30.1 28 0.00096 25.7 2.2 20 198-217 29-48 (83)
255 2lbw_A H/ACA ribonucleoprotein 28.9 1.1E+02 0.0037 24.1 5.9 50 170-221 25-76 (121)
256 3kp1_A D-ornithine aminomutase 28.4 99 0.0034 32.1 6.6 56 150-210 631-689 (763)
257 3ghf_A Septum site-determining 27.7 1E+02 0.0035 24.3 5.4 46 168-213 25-78 (120)
258 1eh1_A Ribosome recycling fact 27.7 2E+02 0.007 24.6 7.6 32 358-397 77-108 (185)
259 4a18_G RPL30; ribosome, eukary 26.7 1.2E+02 0.004 23.2 5.5 51 170-222 27-79 (104)
260 4gqr_A Pancreatic alpha-amylas 26.1 39 0.0013 33.5 3.3 30 190-219 71-100 (496)
261 3on1_A BH2414 protein; structu 25.7 1E+02 0.0035 23.3 5.0 43 170-214 23-65 (101)
262 1vr6_A Phospho-2-dehydro-3-deo 25.4 58 0.002 31.1 4.2 57 165-221 220-287 (350)
263 3sz8_A 2-dehydro-3-deoxyphosph 25.4 67 0.0023 29.7 4.5 41 180-220 161-206 (285)
264 2ab1_A Hypothetical protein; H 24.9 1.3E+02 0.0043 23.8 5.5 51 167-218 48-98 (122)
265 2vt1_B Surface presentation of 24.6 40 0.0014 25.5 2.2 20 198-217 29-48 (93)
266 3t7y_A YOP proteins translocat 24.6 39 0.0013 25.8 2.2 32 181-217 32-63 (97)
267 3v7q_A Probable ribosomal prot 24.1 1.1E+02 0.0039 23.1 4.9 43 170-214 24-66 (101)
268 3c01_E Surface presentation of 23.8 41 0.0014 25.7 2.2 20 198-217 29-48 (98)
269 1pqh_A Aspartate 1-decarboxyla 22.9 1.1E+02 0.0038 24.9 4.6 14 177-190 115-128 (143)
270 3j21_Z 50S ribosomal protein L 22.9 1.3E+02 0.0044 22.6 5.0 50 170-221 20-71 (99)
271 1vli_A Spore coat polysacchari 22.6 59 0.002 31.5 3.6 85 165-253 165-262 (385)
272 1tks_A 3,4-dihydroxy-2-butanon 22.6 1.3E+02 0.0044 26.2 5.4 35 180-214 158-194 (204)
273 1zco_A 2-dehydro-3-deoxyphosph 21.7 1.1E+02 0.0038 27.8 5.2 57 165-221 137-204 (262)
274 3u5e_c L32, RP73, YL38, 60S ri 21.7 1.7E+02 0.0057 22.3 5.5 51 170-222 27-79 (105)
275 3cpq_A 50S ribosomal protein L 21.2 1.6E+02 0.0053 22.7 5.3 51 170-222 26-78 (110)
276 1g57_A DHBP synthase, 3,4-dihy 20.8 1.7E+02 0.0059 25.7 6.0 35 180-214 166-201 (217)
277 1snn_A DHBP synthase, 3,4-dihy 20.4 1.4E+02 0.0049 26.4 5.3 35 180-214 177-212 (227)
278 1w41_A 50S ribosomal protein L 20.4 1.5E+02 0.0052 22.2 5.0 51 170-222 21-73 (101)
279 1b93_A Protein (methylglyoxal 20.2 1.6E+02 0.0055 24.3 5.4 46 172-217 73-121 (152)
No 1
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=100.00 E-value=2.6e-112 Score=841.68 Aligned_cols=453 Identities=60% Similarity=0.981 Sum_probs=389.5
Q ss_pred cccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012104 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQ 88 (471)
Q Consensus 9 ~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~ 88 (471)
++.|++.|||++++|++|.+||+++|+||||||++||+|+++++|+|+|+|+|||||.|||+||+++|++|.+|++|+++
T Consensus 32 ~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~ 111 (490)
T 3ou5_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHH
T ss_pred ccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCC
Q 012104 89 TFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYI 168 (471)
Q Consensus 89 lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~i 168 (471)
+||+++++|+|||||+||++||.+++.||++|||+||.+++.+|||+|||+.... .+++++|.+|++++|++|++++.|
T Consensus 112 lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~-~~v~~sg~~~~~~~Y~vd~~t~~I 190 (490)
T 3ou5_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPKTGLI 190 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC-----------------------------CBCEETTTTEE
T ss_pred HhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCC-cccccccccccccccccCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999976543 467889999999999999999999
Q ss_pred CHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCC
Q 012104 169 DYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248 (471)
Q Consensus 169 D~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~G 248 (471)
|||+++++++++|||||+++.|.|++.+|++++++||+++|++|++|+||.+|||++|.+|+|+++|||||+||||||+|
T Consensus 191 Dyd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrG 270 (490)
T 3ou5_A 191 DYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 270 (490)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCS
T ss_pred cHHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeCCCCCCCCC-CCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 249 PRAGMIFYRKGPKPPKKG-QPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 249 prgG~i~~~~~~~~~~~~-~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
||||+|+++++.+...++ ++.+. |++.++|++++||++||+|++|.+||+|+||+++++++|++|++|+++|++.|++
T Consensus 271 PrGG~Il~~~~~~~~~~k~~~~~~-~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~ 349 (490)
T 3ou5_A 271 ARSGLIFYRKGVKAVDPKTGREIP-YTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp CSCEEEEEECSEEEECC--CCEEE-CCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeccccccccccccchhH-HHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 999999999864333222 33332 4789999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 328 YLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 328 ~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
.|.+.||++++++|++|++++|+++.++++.++++.|+++||.+|+|.+|+|.+|+.++|||||++++|+||+.++||++
T Consensus 350 ~L~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~ 429 (490)
T 3ou5_A 350 ALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR 429 (490)
T ss_dssp HHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH
T ss_pred HHHhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccC----CChHHHHHHHHHHHHHHhcCCCCCCCc
Q 012104 408 IGEFLHRAVTLTLEIQKEYGKLLKDFNKGL----VNNKDIEALKADVEKFASSFDMPGFKM 464 (471)
Q Consensus 408 l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~p~~~~~~ 464 (471)
|+++|.+++....+++.+.+ ++++|+..+ ++...++++|++|.+||++||+|+||+
T Consensus 430 IA~~I~~~l~~~~~~~~~~~-kl~~f~~~~~~~~~~~~~i~~lr~~V~~l~~~FP~pg~d~ 489 (490)
T 3ou5_A 430 VVDFIDEGVNIGLEVKSKTA-KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 489 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-SHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSC
T ss_pred HHHHHHHHHHhhhhhhhhhh-hhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999888877666 467775433 234568899999999999999999985
No 2
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=100.00 E-value=1.1e-77 Score=620.70 Aligned_cols=452 Identities=60% Similarity=0.985 Sum_probs=369.8
Q ss_pred ccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHh
Q 012104 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQT 89 (471)
Q Consensus 10 ~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~l 89 (471)
+.|+++||+++++|.+|.+||++.|+||+|||++||+|++|+++.++++|++||||+|||+|+++++.+|++|+++++++
T Consensus 33 ~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l 112 (490)
T 2a7v_A 33 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEA 112 (490)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCC
Q 012104 90 FHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYID 169 (471)
Q Consensus 90 fg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD 169 (471)
||+++++|+++|+++|||+||.+++.++++|||+|+++++.|+||++|++.... ..+...|..++.++++++++++.+|
T Consensus 113 ~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~-~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 113 FDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp TTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC--------------------------------CCBCTTTCSBC
T ss_pred cCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcc-hhHHHcCCeEEEEecccccccCCcC
Confidence 999988787889999999999999999999999999999999999999864322 2345667777788888887789999
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCC
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP 249 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gp 249 (471)
+++|++++.+++||+|+++.+.+|+..|+++|++||+++|++|++|++|++|+++.|..++|++++|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999999877899999988888999999999999999999999999999999998888888889999999999999999
Q ss_pred CeEEEEeeCCCCCCCC-CCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 012104 250 RAGMIFYRKGPKPPKK-GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 250 rgG~i~~~~~~~~~~~-~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~ 328 (471)
+||++++++++..+.+ .+..+ .|++.+++++.+|++.+|+|+++.++|+++|++++..++++++.+++.+|+++|++.
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~-~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~ 350 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREI-PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADA 350 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEE-ECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchheeeccchhcccccccchh-hHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999874210000 00000 125778889899999999999999999999999988778899999999999999999
Q ss_pred HHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 329 LTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 329 L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
|.+.|++++.+++++|++|+++++.++++.++.+.|+++||.++++++|++.+|..+++||||++++|++|++++||+++
T Consensus 351 L~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~ 430 (490)
T 2a7v_A 351 LLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HHHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHH
Confidence 99999999877788999999998888899999999999999999999999988888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccCCCh----HHHHHHHHHHHHHHhcCCCCCCCc
Q 012104 409 GEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKM 464 (471)
Q Consensus 409 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~p~~~~~~ 464 (471)
+++|.+++....++|.+. +++++|++.+.++ ..++++|++|.+||++||+|+|++
T Consensus 431 ~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 489 (490)
T 2a7v_A 431 VDFIDEGVNIGLEVKSKT-AKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 489 (490)
T ss_dssp HHHHHHHHHHHHHHHHHC-CSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSC
T ss_pred HHHHHHHHHhhhhhhhhh-chhhHHHhhhccChhhHHHHHHHHHHHHHHHHhCCCCCcCC
Confidence 999999999998888777 5688998766432 247899999999999999999864
No 3
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=1.8e-68 Score=555.77 Aligned_cols=460 Identities=59% Similarity=0.968 Sum_probs=395.5
Q ss_pred cccccccccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 012104 3 PVNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (471)
Q Consensus 3 ~~~~~~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~ 82 (471)
.++.|+++++..+||++++.+.+|.+||++.|+|++|+|++|+.|++++.+.+.++|++|||+.|||+|++.++.+|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~ 95 (483)
T 1rv3_A 16 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLC 95 (483)
T ss_dssp THHHHTTSCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHH
T ss_pred hHHHHHhhhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHH
Confidence 35667777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
+++++++||+++++|+++|+++||++||.+++.++++|||+|++++++|++|++|++.... ..+...|..++.++++++
T Consensus 96 ~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~-~~v~~~G~~~~~v~~~~~ 174 (483)
T 1rv3_A 96 QKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDK-KKISATSIFFESMAYKVN 174 (483)
T ss_dssp HHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSS-CBCSHHHHHSEEEEECBC
T ss_pred HHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcc-cCcccccceEEEEECccc
Confidence 9999999999987776789999999999999999999999999999999999998864322 234556666788888888
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCC
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT 242 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~ 242 (471)
++++.+|+++|++++.+.+||+|+++.+++++.+|+++|++||+++|++|++|++|++|+++.+..++|++++|++++|+
T Consensus 175 ~~~~~iD~d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~ 254 (483)
T 1rv3_A 175 PDTGYIDYDRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTT 254 (483)
T ss_dssp TTTCSBCHHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEES
T ss_pred cCCCcCCHHHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecC
Confidence 77899999999999986689999887555668899999999999999999999999999998888888888899999999
Q ss_pred CCcCCCCCeEEEEeeCCCCCCCC-CCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 012104 243 HKSLRGPRAGMIFYRKGPKPPKK-GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN 321 (471)
Q Consensus 243 ~K~l~GprgG~i~~~~~~~~~~~-~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~n 321 (471)
||+|+|||||+++++++...... +|... .|++.++++...+|+.+|+|+++.++++++|++++..++++++.+++.+|
T Consensus 255 ~K~l~GprgG~i~~~~~~~~~~~~~g~~~-~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~ 333 (483)
T 1rv3_A 255 HKTLRGCRAGMIFYRRGVRSVDPKTGKEI-LYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 333 (483)
T ss_dssp SGGGCCCSCEEEEEECSBCC-------CC-BCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEcchhhhhccccCcch-hhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 99999999999999986321111 11111 13466677777888889999999999999999998878899999999999
Q ss_pred HHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 322 AVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 322 a~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
+++|.+.|.+.|++++.+++++|++++++...++++.++.+.|+++||.++++.+|++..++.++++|||++.+|+||++
T Consensus 334 ~~~l~~~L~~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~ 413 (483)
T 1rv3_A 334 CRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLL 413 (483)
T ss_dssp HHHHHHHHHHTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCC
T ss_pred HHHHHHHHHhcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCC
Confidence 99999999999999977666789999999877788999999999999999987777765455678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhccCCChH----HHHHHHHHHHHHHhcCCCCCCCc
Q 012104 402 EKDFEQIGEFLHRAVTLTLEIQKEYGK--LLKDFNKGLVNNK----DIEALKADVEKFASSFDMPGFKM 464 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~p~~~~~~ 464 (471)
++|+++++++|.+++.....++.+.+. .+++|++.+.++. .++++|++|.+||++||+|+||.
T Consensus 414 ~edi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (483)
T 1rv3_A 414 EKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGLPG 482 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTSCCCSSSC
T ss_pred HHHHHHHHHHHHHHHHhccchhccccccchhhHHHHhhccccchhHHHHHHHHHHHHHHHhCCCCCcCC
Confidence 999999999999999865444443332 6788887775433 68899999999999999999863
No 4
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.8e-55 Score=453.86 Aligned_cols=417 Identities=44% Similarity=0.701 Sum_probs=355.0
Q ss_pred cccccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012104 7 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (471)
Q Consensus 7 ~~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~ 86 (471)
.+...+..+||+++..+.+|.+||.+.|+|++++|+++|.|++++.+.+.++|..|||+.|||.|+...+.+|+++++++
T Consensus 21 ~~~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~l 100 (447)
T 3h7f_A 21 SMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRA 100 (447)
T ss_dssp GGGCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHH
Confidence 34566888999999999999999999999999999999999999999998899999999999999999999998888999
Q ss_pred HHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCC
Q 012104 87 LQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG 166 (471)
Q Consensus 87 ~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~ 166 (471)
++++|++. +.++++||++||.+++.++++|||+|+++++.|++|++++. .+...|..+..++++++++++
T Consensus 101 a~~~g~~~----~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~ 170 (447)
T 3h7f_A 101 KALFGAEF----ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGM------RLNFSGKLYENGFYGVDPATH 170 (447)
T ss_dssp HHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC------TTSHHHHSSEEEEECCCTTTC
T ss_pred HHHcCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhh------hhhhcCCeeEEEEcCcCcccC
Confidence 99999986 56768999999999999999999999999999999877653 233455666777888877778
Q ss_pred CCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcC
Q 012104 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSL 246 (471)
Q Consensus 167 ~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l 246 (471)
.+|++++++++.+.+|++|+++.+.++...++++|+++|+++|++|++|++|..|+++.|..+++++++|++++|+||+|
T Consensus 171 ~~d~~~l~~~i~~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l 250 (447)
T 3h7f_A 171 LIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTL 250 (447)
T ss_dssp SCCHHHHHHHHHHHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGG
T ss_pred CcCHHHHHHHHHhcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCC
Confidence 99999999999767899998864445666699999999999999999999998898887777777778999999999999
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 012104 247 RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (471)
Q Consensus 247 ~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~ 326 (471)
+|||||++++++ ++.+.++...+++.+++|+...++++++++.++..++++++.+++.+++++|.
T Consensus 251 ~G~~gG~i~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 315 (447)
T 3h7f_A 251 GGGRSGLIVGKQ---------------QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIA 315 (447)
T ss_dssp CCCSCEEEEECG---------------GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECH---------------HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 999999999987 56777777777888889998888888889988877788999999999999999
Q ss_pred HHHHcC-----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCC
Q 012104 327 NYLTGK-----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 327 ~~L~~~-----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~ 400 (471)
+.|.+. |++++.++++++++++++++.++++..+.+.|+++||.++++.+|++. ++..++++|||++.++++++
T Consensus 316 ~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~ 395 (447)
T 3h7f_A 316 DRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGF 395 (447)
T ss_dssp HHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTC
T ss_pred HHHHhccccCCCeEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCC
Confidence 999988 999876567788999999877888889999999999999988778753 55667899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHHhcCCCC-CCCcccc
Q 012104 401 LEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP-GFKMSEM 467 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~-~~~~~~~ 467 (471)
+++|+++++++|.+++.... +. +++++|++|.+|++.||+| ++++|..
T Consensus 396 ~~eei~~~~~~l~~~l~~~~------------------~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~ 444 (447)
T 3h7f_A 396 GDTEFTEVADIIATALATGS------------------SV-DVSALKDRATRLARAFPLYDGLEEWSL 444 (447)
T ss_dssp CHHHHHHHHHHHHHHHHSGG------------------GC-CHHHHHHHHHHHHHHSCSSTTGGGCBS
T ss_pred CHHHHHHHHHHHHHHHhccC------------------ch-hHHHHHHHHHHHHHhCCCCCCchhhhh
Confidence 99999999999999887542 11 2789999999999999994 6888854
No 5
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=4.5e-51 Score=416.26 Aligned_cols=408 Identities=48% Similarity=0.772 Sum_probs=344.5
Q ss_pred cccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc
Q 012104 11 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF 90 (471)
Q Consensus 11 ~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf 90 (471)
.++.+||++++.+.+|..+|.+.++|++++|+++|.|++++.+.+.+.|..||++.++|++....+.+|+.+++++++++
T Consensus 5 ~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 84 (417)
T 3n0l_A 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF 84 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999988898999999999999999999988889999999
Q ss_pred CCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCH
Q 012104 91 HLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDY 170 (471)
Q Consensus 91 g~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~ 170 (471)
|++. .+|.++||++|+.+++.++++|||+|++.+++|+++..++. .+...|..+..++++++ +++.+|+
T Consensus 85 g~~~----~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~-~~~~~d~ 153 (417)
T 3n0l_A 85 NCKF----ANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGA------KVSSSGKMYESCFYGVE-LDGRIDY 153 (417)
T ss_dssp TCSE----EECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------------CCSEEEEECCC-TTSSCCH
T ss_pred CCCC----cceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhh------hhhhhcceeeeEeccCC-CCCCcCH
Confidence 9976 45778999999999999999999999999999988776543 23445566677777777 6788999
Q ss_pred HHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCC
Q 012104 171 DKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPR 250 (471)
Q Consensus 171 ~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gpr 250 (471)
++|++++.+.+|++|+++++.+|...|+++|+++|+++|++||+|++|..|+.+.+..+.+++++|++++|+||+|+|||
T Consensus 154 ~~l~~~i~~~~~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~ 233 (417)
T 3n0l_A 154 EKVREIAKKEKPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPR 233 (417)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCS
T ss_pred HHHHHHHHhcCCeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCC
Confidence 99999998668999998755579999999999999999999999999988988877777777788999999999999999
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
||+++++++ ++.+.+....+++..++|+...+++++.++......+++++.+++.+++++|.+.|.
T Consensus 234 ~G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 299 (417)
T 3n0l_A 234 GGIIMTNDE--------------ELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLM 299 (417)
T ss_dssp CEEEEESCH--------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEECCH--------------HHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999853 567777766667777888898988888888876667788999999999999999999
Q ss_pred cCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 331 GKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 331 ~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
+.|++++.++...+++|+++.+.+++..++.+.|.++||.+++...|+.. ++...+++|+|++.+++++++++++++++
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~ 379 (417)
T 3n0l_A 300 DRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVS 379 (417)
T ss_dssp HTTCEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHH
T ss_pred hCCceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHH
Confidence 98998866556678889998777788899999999999999988777664 45566899999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHHhcCCCCC
Q 012104 410 EFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 461 (471)
Q Consensus 410 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~ 461 (471)
+.|.++++.. .+...+++++++|.+|+++||+|+
T Consensus 380 ~~l~~~l~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~ 413 (417)
T 3n0l_A 380 NYIADILDDV------------------NNEKLQENIKQELKKLASNFIIYE 413 (417)
T ss_dssp HHHHHHHHTT------------------TCHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHhcc------------------cchhhHHHHHHHHHHHHhcCCCcc
Confidence 9999988753 245668999999999999999975
No 6
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.6e-48 Score=398.28 Aligned_cols=418 Identities=45% Similarity=0.696 Sum_probs=324.0
Q ss_pred ccccccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 012104 6 EWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSR 85 (471)
Q Consensus 6 ~~~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~ 85 (471)
.++...+..++|++...+.++.+++.+.++|++++|+.+|.|++++...+.+.|..|+++.++|.+....+.++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (425)
T 3ecd_A 7 PFFSQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIER 86 (425)
T ss_dssp HHHHCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHH
T ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHH
Confidence 45667789999999999999988888999999999999999999999998888888999999998887777778778888
Q ss_pred HHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCC
Q 012104 86 ALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSST 165 (471)
Q Consensus 86 ~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~ 165 (471)
+++++|++. +.|.++||++|+..++.++++|||+|++.++.|++++.++. .+...|..++.+++++++++
T Consensus 87 ~~~~~~~~~----~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~ 156 (425)
T 3ecd_A 87 VKRLFNAGH----ANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGA------KPALSGKWFNALQYGVSRDT 156 (425)
T ss_dssp HHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------------CEEEEECCCTTT
T ss_pred HHHHhCCCC----ceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecch------hhhhcccceeeeecCCCccc
Confidence 999999886 45668899999999999999999999999999988654432 22345555677777777677
Q ss_pred CCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCc
Q 012104 166 GYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKS 245 (471)
Q Consensus 166 ~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~ 245 (471)
+.+|+++|++.+.+.++++|++.+..+|...++++|+++|+++|++||+|++|..|+.+.+..+.+++.+|++++|+||+
T Consensus 157 ~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 157 MLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred CccCHHHHHHHHhhcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 89999999999976689999876555688889999999999999999999999888887766666666789999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 012104 246 LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 246 l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l 325 (471)
++|||||+++++++ ++.+.+....+++.++++....+++++.++......+++++.+++.++++++
T Consensus 237 l~g~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l 302 (425)
T 3ecd_A 237 LRGPRGGFVLTNDE--------------EIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQAL 302 (425)
T ss_dssp GCCCSCEEEEESCH--------------HHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEeCCH--------------HHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999864 5666666666777777888888888888887776667889999999999999
Q ss_pred HHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCCCHHH
Q 012104 326 GNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKD 404 (471)
Q Consensus 326 ~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~~~~d 404 (471)
.+.|.+.|++++.++..++++++++.+.+.+...+.+.|.++||.+.++..|+.. ++...+++|++++..+++++++++
T Consensus 303 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~ 382 (425)
T 3ecd_A 303 GDVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAE 382 (425)
T ss_dssp HHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHH
T ss_pred HHHHHhCCCeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHH
Confidence 9999999998865445677888888766678888999999999999977666643 344567899998888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHHhcCCCC
Q 012104 405 FEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 460 (471)
Q Consensus 405 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 460 (471)
++++++.|.++++... + ....++..++.++++|.+||+.||++
T Consensus 383 i~~~~~~l~~~l~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (425)
T 3ecd_A 383 FREVGRLILEVFEALR------T-------NPEGDHATEQRVRREIFALCERFPIY 425 (425)
T ss_dssp HHHHHHHHHHHHHHHH------H-------CTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHhccc------c-------ccccCchhHHHHHHHHHHHHhcCCCC
Confidence 9999999999887641 0 00123566889999999999999985
No 7
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=100.00 E-value=1.7e-48 Score=397.29 Aligned_cols=415 Identities=45% Similarity=0.718 Sum_probs=326.0
Q ss_pred cccccc--ccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHH
Q 012104 6 EWGNSS--LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCR 83 (471)
Q Consensus 6 ~~~~~~--~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~ 83 (471)
+|++.. ++.++|++++++.++.+++.+.+.+++++|+.+|.|++++...+.+.+..|+++.++|.+....+.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (420)
T 3gbx_A 3 AMLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAI 82 (420)
T ss_dssp CBCTTTCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHH
T ss_pred hHHhhhcchhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHH
Confidence 344444 788999999999999999889999999999999999999999988888889999999988887788888888
Q ss_pred HHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC
Q 012104 84 SRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS 163 (471)
Q Consensus 84 ~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~ 163 (471)
+++++++|++. ..|.++||++|+.+++.++++|||+|++.++.|++++.++. .+...|..+..++++++
T Consensus 83 ~~la~~~~~~~----~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~- 151 (420)
T 3gbx_A 83 DRAKELFGADY----ANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGS------PVNFSGKLYNIVPYGID- 151 (420)
T ss_dssp HHHHHHHTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------------CHHHHSEEEEEEEC-
T ss_pred HHHHHHhCCCC----ceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccch------hhhhcccceeEEeccCC-
Confidence 99999999976 45767899999999999999999999999999988765442 23345555666777777
Q ss_pred CCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCC
Q 012104 164 STGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTH 243 (471)
Q Consensus 164 ~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~ 243 (471)
+++.+|+++|++++.+.++++|++.++.+|...|+++|+++|+++|++||+|++|..|+...+..+.++..+|++++|+|
T Consensus 152 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~s 231 (420)
T 3gbx_A 152 ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTH 231 (420)
T ss_dssp TTCSCCHHHHHHHHHHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESS
T ss_pred ccCCcCHHHHHHHHHhcCCeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecc
Confidence 66889999999999876799999865556778899999999999999999999998888776666666667899999999
Q ss_pred CcCCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 012104 244 KSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323 (471)
Q Consensus 244 K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~ 323 (471)
|++.||+||++++++.+ . ++.+.+....+++.+++|....+++++.++......+++++.+++.++++
T Consensus 232 K~~~g~~gg~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (420)
T 3gbx_A 232 KTLAGPRGGLILAKGGD----------E--ELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAK 299 (420)
T ss_dssp GGGCSCSCEEEEESSCC----------H--HHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCceEEEEcCCc----------H--HHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999998721 0 35566666667777788888888888888877766778889999999999
Q ss_pred HHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCCCH
Q 012104 324 ALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLE 402 (471)
Q Consensus 324 ~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~~~ 402 (471)
++.+.|.+.|++++.++..++++|+++.+.+.+...+.+.|+++||.+.+...|+.. .+..++++||+++..+++++++
T Consensus 300 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~ 379 (420)
T 3gbx_A 300 AMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKE 379 (420)
T ss_dssp HHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCH
T ss_pred HHHHHHHhcCCeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCH
Confidence 999999999999875545677888888766778888999999999999986666553 3455678999998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHHhcCCCCC
Q 012104 403 KDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 461 (471)
Q Consensus 403 ~d~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~~ 461 (471)
+++++++++|.+++... .+...+++++++|.+|+++||++.
T Consensus 380 ~~i~~~~~~l~~~l~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 420 (420)
T 3gbx_A 380 AEVKELAGWMCDVLDNI------------------NDEATIERVKAKVLDICARFPVYA 420 (420)
T ss_dssp HHHHHHHHHHHHHHHTT------------------TCHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHhCc------------------ccchhHHHHHHHHHHHHHhCCCCC
Confidence 99999999999988753 245668899999999999999863
No 8
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=100.00 E-value=3.1e-42 Score=349.62 Aligned_cols=402 Identities=48% Similarity=0.765 Sum_probs=317.5
Q ss_pred ccccccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHh
Q 012104 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQT 89 (471)
Q Consensus 10 ~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~l 89 (471)
+.+.++||+++..+.++.+++.+.+.+.+++++.+|.|++++...+.++|..||++.++|.|......+|+.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~ 81 (405)
T 2vi8_A 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQL 81 (405)
T ss_dssp CSHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHH
Confidence 34667899999999999888878888889999999999999998887677778888888887777788887788999999
Q ss_pred cCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCC
Q 012104 90 FHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYID 169 (471)
Q Consensus 90 fg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD 169 (471)
+|++. ..+.++||++|+.+++.++++|||+|+++++.|+++...+. .+...|..++++.++++++++.+|
T Consensus 82 ~g~~~----~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~d 151 (405)
T 2vi8_A 82 FGAEH----ANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS------PVNFSGVQYNFVAYGVDPETHVID 151 (405)
T ss_dssp HTCSE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC------TTSHHHHHSEEEEECBCTTTCSBC
T ss_pred hCCCc----eEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc------hhhhccceeEEEecccccccCCcC
Confidence 99885 45667899999999999999999999999998877643211 122345445666777665678899
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCC
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP 249 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gp 249 (471)
++++++.+.+.++++|+++++.+|...|+++|+++|+++|++|++|++|..|....+..+.++..+|++++|+||++.||
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~ 231 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP 231 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCC
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCC
Confidence 99999999755789998876667877799999999999999999999998766544444444446899999999999888
Q ss_pred CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 012104 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (471)
Q Consensus 250 rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L 329 (471)
.||++++++ ++.+.+.....++..++++..+++++..+++.....++++..+++.++++++.+.|
T Consensus 232 ~gG~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 296 (405)
T 2vi8_A 232 RGGMILCQE---------------QFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL 296 (405)
T ss_dssp SCEEEEECH---------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcH---------------HHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 899999886 56666655444555677778788887778876655577888999999999999999
Q ss_pred HcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 330 TGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 330 ~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
++.|++++.++...+++++++...+.+..++.+.|.++||.+.++..|.+. .+..++++||+++..+++.++++|++++
T Consensus 297 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~ 376 (405)
T 2vi8_A 297 QNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEI 376 (405)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred HhCCCeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHH
Confidence 988998864333567888888654567888888999999999987644221 2233578999987666666789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHH
Q 012104 409 GEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFA 454 (471)
Q Consensus 409 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 454 (471)
.+.|.++++.. .+++++..+|++|.+|+
T Consensus 377 ~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~ 404 (405)
T 2vi8_A 377 AAIIGLVLKNV------------------GSEQALEEARQRVAALT 404 (405)
T ss_dssp HHHHHHHHTCT------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc------------------cccccHHHHHHHHHHhh
Confidence 99999887542 23445778999999987
No 9
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=100.00 E-value=3.8e-42 Score=349.15 Aligned_cols=402 Identities=48% Similarity=0.779 Sum_probs=316.2
Q ss_pred cccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 012104 13 ETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL 92 (471)
Q Consensus 13 ~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~ 92 (471)
.+.||++++.+.++..++...|.+.+++|..+|.|++++...+.+.+..+||+.+++.|....+.+|+.+++++++++|+
T Consensus 5 ~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~ 84 (407)
T 2dkj_A 5 LKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA 84 (407)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999988889999999999999999999998887656667888777767776678887788899999998
Q ss_pred CCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHH
Q 012104 93 DPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDK 172 (471)
Q Consensus 93 ~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~ 172 (471)
+. .+|.++||+.|+.+++.++++|||+|++.++.|++++.... .+...|..+..++++++++++.+|+++
T Consensus 85 ~~----~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~d~~~ 154 (407)
T 2dkj_A 85 AW----ANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGS------RVNFSGKLYKVVSYGVRPDTELIDLEE 154 (407)
T ss_dssp SE----EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTC------TTSHHHHHSEEEEECCCTTTSSCCHHH
T ss_pred Cc----ceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHH------HHHhcCceEEEEecCCCcccCccCHHH
Confidence 75 45777899999999999999999999999999887742111 223445544566666565568899999
Q ss_pred HHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCeE
Q 012104 173 LEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAG 252 (471)
Q Consensus 173 le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~GprgG 252 (471)
+++.+.+.++++|+++...+|...|+++|+++|+++|++|++|++|..|+...+...+++...|++++|+||+|+||++|
T Consensus 155 l~~~l~~~~~~~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G 234 (407)
T 2dkj_A 155 VRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGG 234 (407)
T ss_dssp HHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCE
T ss_pred HHHHHhhcCCeEEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCce
Confidence 99999755789888753345678899999999999999999999999777766654444556899999999999999999
Q ss_pred EEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 253 ~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
+++++++ ++.+.+.....++..++++...++++..+++.....++++..+++.++++++.+.|++.
T Consensus 235 ~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 300 (407)
T 2dkj_A 235 LILSNDP--------------ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR 300 (407)
T ss_dssp EEEESCH--------------HHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCH--------------HHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999842 56666655444555567777777677677777545577888999999999999999988
Q ss_pred CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeEEecCCCCCcCCCHHHHHHHHHH
Q 012104 333 GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 411 (471)
Q Consensus 333 g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~ 411 (471)
|++++.++...+++++++...+.+..++.+.|.++||.+.++..|... .+..++++|++++..|+++.+++|++++.+.
T Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~ 380 (407)
T 2dkj_A 301 GYRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEMPLVAEL 380 (407)
T ss_dssp TCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHH
T ss_pred CceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHHHHHHHH
Confidence 998864334567888888654567888888899999999987654221 2223578999986554445668999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccCCChHHHHHHHHHHHHHHhcCCCC
Q 012104 412 LHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMP 460 (471)
Q Consensus 412 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~p~~ 460 (471)
|.++++. . . .+.++++|.+|.++||+|
T Consensus 381 l~~~~~~-~------------------~---~~~~~~~~~~~~~~~~~~ 407 (407)
T 2dkj_A 381 IDRALLE-G------------------P---SEALREEVRRLALAHPMP 407 (407)
T ss_dssp HHHHHHH-C------------------C---CHHHHHHHHHHHHTSCCC
T ss_pred HHHHHhc-C------------------c---hHHHHHHHHHHHHhcCCC
Confidence 9888753 1 1 246889999999999985
No 10
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.97 E-value=1.6e-28 Score=248.91 Aligned_cols=334 Identities=15% Similarity=0.081 Sum_probs=236.8
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+.+.|++..++++|++++.+.+.+.+ ...+.+.+ ...++++++++|++.+. ..+.++||++|+.
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~-~~~~~~la~~~~~~~~~--~v~~~~sgt~al~ 78 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLIGQY-----------DPAMTHYM-NEVMALYRGVFRTENRW--TMLVDGTSRAGIE 78 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCCCTT-----------CHHHHHHH-HHHHHHHHHHHTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhccccccc-----------cHHHHHHH-HHHHHHHHHHhCCCCCc--EEEECCCcHHHHH
Confidence 3467888889999999999875432211 11222233 34568899999998642 2355678899999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++|||+|++.++.|.+.. +. ..+...| .+++.++++ +++.+|++++++.+.+.++++|++. +
T Consensus 79 ~~~~~~~~~gd~Vl~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 148 (411)
T 3nnk_A 79 AILVSAIRPGDKVLVPVFGRFGHL---LC----EIARRCR--AEVHTIEVP-WGEVFTPDQVEDAVKRIRPRLLLTVQGD 148 (411)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCEEEEecCCchHHH---HH----HHHHHcC--CeEEEEecC-CCCCCCHHHHHHHHhhCCCeEEEEeCCC
Confidence 999999999999999998775421 10 0122234 355555655 5678999999999976589988754 6
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~ 266 (471)
|++|...|+++|+++|+++|+++++|++|..|. .+..+. ++|++++|+||+|.||.| |+++++++
T Consensus 149 nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~-----~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~------- 216 (411)
T 3nnk_A 149 TSTTMLQPLAELGEICRRYDALFYTDATASLGG-----NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSAR------- 216 (411)
T ss_dssp TTTTEECCCTTHHHHHHHHTCEEEEECTTTBTT-----BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHH-------
T ss_pred CCcceeccHHHHHHHHHHcCCEEEEECCcccCC-----cccchhccCCcEEEecCccccCCCCceEEEEECHH-------
Confidence 899999999999999999999999999987543 222232 589999999999777765 88888763
Q ss_pred CCCCcccchHhhhhhcC-----------------------------------CCCCCCCCcHHHHHHHHHHHHHhccHHH
Q 012104 267 QPEGAVYDFEDKINFAV-----------------------------------FPSLQGGPHNHQIGALAVALKQASTPAF 311 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~~~-----------------------------------~~~~~g~p~~~~iaa~a~al~~~~~~~~ 311 (471)
+.+++.... .....++++...++++..+++.....++
T Consensus 217 --------~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~ 288 (411)
T 3nnk_A 217 --------MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGL 288 (411)
T ss_dssp --------HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCH
T ss_pred --------HHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 222222110 1112356677777787778877654447
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEeeCCC--CCeeEEEEccCCCCCHHHHHHHHhh-cCeEeccCCcCCCCCCCCCCee
Q 012104 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGT--ENHLVLWDLRPLGLTGNKVEKLCDL-CNITVNKNAVFGDSSALAPGGV 388 (471)
Q Consensus 312 ~~~~~~~~~na~~l~~~L~~~g~~i~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~i 388 (471)
++..+++.++++++.+.|++.|++++.+.. ..+++++.+. .+.+..++.+.|.+ +||.+.++..+ ...+.+
T Consensus 289 ~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~~-----~~~~~i 362 (411)
T 3nnk_A 289 DYGIARHKLHGDALVKGIQAMGLETFGDLKHKMNNVLGVVIP-QGINGDQARKLMLEDFGIEIGTSFGP-----LHGKVW 362 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBCSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHSEEEEECCGG-----GTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeCCCcccccccEEEEECC-CCCCHHHHHHHHHHhcCeEEeCccCC-----CCCCEE
Confidence 888899999999999999998888754221 2456666663 36678888777654 59999876422 234689
Q ss_pred EEec-CCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 389 RIGT-PAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 389 Rig~-~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
||++ +..+ ++++++++.+.|.++++..
T Consensus 363 Ri~~~~~~~----~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 363 RIGTMGYNA----RKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp EEECCGGGC----SHHHHHHHHHHHHHHHHHT
T ss_pred EEeCccCcC----CHHHHHHHHHHHHHHHHHc
Confidence 9997 4333 3899999999999988753
No 11
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.97 E-value=9.8e-29 Score=247.94 Aligned_cols=331 Identities=16% Similarity=0.059 Sum_probs=234.3
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~ 112 (471)
.+.+.+++..++++|++++...+.+.+ +... ..+....++++++++|++... ...+.++||++|+.
T Consensus 3 ~~~~~~gp~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~~~~~la~~~~~~~~~-~~v~~~~g~t~al~- 68 (384)
T 3zrp_A 3 KLLLHVGPTTIKEDVLVAGLENNVGFT-----------SKEF-VEALAYSLKGLRYVMGASKNY-QPLIIPGGGTSAME- 68 (384)
T ss_dssp ---CCSSCSCCCHHHHHHTTCCSCCTT-----------SHHH-HHHHHHHHHHHHHHHTCCTTS-EEEEEESCHHHHHH-
T ss_pred ceeccCCCCCCCHHHHHHhhccccccc-----------cHHH-HHHHHHHHHHHHHHhCCCCCC-cEEEEcCCcHHHHH-
Confidence 356788888899999999876553221 1122 233334568899999988621 12455778889999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CC
Q 012104 113 AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GS 190 (471)
Q Consensus 113 ~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s 190 (471)
++.++++|||+|++.++.|.+.. +. ..+...| .+++.++++ .++.+|++++++.+.++++++|++. +|
T Consensus 69 ~~~~~~~~gd~vi~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~n 138 (384)
T 3zrp_A 69 SVTSLLKPNDKILVVSNGVFGDR---WE----QIFKRYP--VNVKVLRPS-PGDYVKPGEVEEEVRKSEYKLVALTHVET 138 (384)
T ss_dssp HGGGGCCTTCEEEEECSSHHHHH---HH----HHHTTSS--CEEEEECCS-TTCCCCHHHHHHHHHHSCEEEEEEESEET
T ss_pred HHHhhcCCCCEEEEecCCcchHH---HH----HHHHHcC--CcEEEecCC-CCCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 99999999999999997764321 10 0111233 455566666 3578999999999987678988754 68
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCCCC
Q 012104 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQ 267 (471)
Q Consensus 191 ~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~ 267 (471)
++|...|+++|.++|+++|++|++|++|..|.. +.++. ++|++++|+||++.||. .|+++++++
T Consensus 139 ptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~-------- 205 (384)
T 3zrp_A 139 STGVREPVKDVINKIRKYVELIVVDGVSSVGAE-----EVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPK-------- 205 (384)
T ss_dssp TTTEECCHHHHHHHHGGGEEEEEEECTTTTTTS-----CCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHH--------
T ss_pred CCceECcHHHHHHHHHhcCCEEEEECcccccCc-----cccccccCCCEEEecCcccccCCCceEEEEECHH--------
Confidence 899999999999999999999999999975532 22333 58999999999987665 488888763
Q ss_pred CCCcccchHhhh--------------------hhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 012104 268 PEGAVYDFEDKI--------------------NFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 268 ~~i~~~~l~~~i--------------------~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l 325 (471)
+.+.+ ... ......|+++...++++..++......++++..+++.++++++
T Consensus 206 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 278 (384)
T 3zrp_A 206 -------ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAI 278 (384)
T ss_dssp -------HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred -------HHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 22222 110 0111124677777777777887665545788889999999999
Q ss_pred HHHHHcCCceEeeCC---CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCH
Q 012104 326 GNYLTGKGYSLVTGG---TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLE 402 (471)
Q Consensus 326 ~~~L~~~g~~i~~~~---~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~ 402 (471)
.+.|++.|++++... ...+++++.+.. .+..++.+.|.+.||.+.++..+ +. +.+||++...+ ++
T Consensus 279 ~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~----~~--~~iRi~~~~~~----~~ 346 (384)
T 3zrp_A 279 RAGLEALGLEIVARRPESYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGVHP----AF--KYFRIGHMGWV----TP 346 (384)
T ss_dssp HHHHHHTTCCBSCSSGGGBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECCCT----TC--CEEEEECCSSC----CH
T ss_pred HHHHHHCCCeEccCcccccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCCCC----Cc--CEEEEeccccC----CH
Confidence 999998888875432 124566777653 67888988888889999865421 11 78999975543 48
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012104 403 KDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 403 ~d~~~l~~~i~~~l~~~ 419 (471)
+|++++.+.|.++++..
T Consensus 347 e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 347 NDAIIAISVIERTLRKL 363 (384)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999988753
No 12
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.97 E-value=6e-28 Score=245.16 Aligned_cols=350 Identities=13% Similarity=0.083 Sum_probs=235.4
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+.+.+++..+++++++++.......| .... ..+....++++++++|++.+. +.+.++||++|+.
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~-----------~~~~-~~~~~~l~~~la~~~g~~~~~--~~~~~~s~t~al~ 76 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVVGQF-----------DPAF-TGIMNETMEMLRELFQTKNRW--AYPIDGTSRAGIE 76 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCCCTT-----------SHHH-HHHHHHHHHHHHHHTTCCCSE--EEEEESCHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCCCCc-----------cHHH-HHHHHHHHHHHHHHhCCCCCc--EEEecCcHHHHHH
Confidence 4567888888899999998865221111 1112 233334568899999988642 2236778889999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++|||+|++.++.|.++. +. ..+...| .+++.++++ .++.+|++++++++.+.++++|++. +
T Consensus 77 ~~~~~l~~~gd~Vl~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 146 (416)
T 3isl_A 77 AVLASVIEPEDDVLIPIYGRFGYL---LT----EIAERYG--ANVHMLECE-WGTVFDPEDIIREIKKVKPKIVAMVHGE 146 (416)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCEEEEecCCcccHH---HH----HHHHhcC--CeeEEEecC-CCCCCCHHHHHHHHhhCCCcEEEEEccC
Confidence 999999999999999998765421 10 0122234 355566666 4578999999999985578988744 7
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCC----C
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPK----P 262 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~----~ 262 (471)
|++|...|+++|+++|+++|+++++|++|+.|.. +.++. ++|++++|+||++.||.| |++++++++. +
T Consensus 147 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 147 TSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC-----EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp TTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEECCccccCC-----CcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 8899999999999999999999999999975532 22332 589999999999777765 8888776310 0
Q ss_pred ---------------CCCCCCCCc--ccchHhhhhh-cCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 012104 263 ---------------PKKGQPEGA--VYDFEDKINF-AVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (471)
Q Consensus 263 ---------------~~~~~~~i~--~~~l~~~i~~-~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~ 324 (471)
...+|..+. ..+....... .......++++...++++..+++.....++++..+++.+++++
T Consensus 222 ~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 301 (416)
T 3isl_A 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAA 301 (416)
T ss_dssp C------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 000000000 0000000000 0111224566777777777788766543478889999999999
Q ss_pred HHHHHHcCCceEeeCCC--CCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 325 LGNYLTGKGYSLVTGGT--ENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 325 l~~~L~~~g~~i~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
+.+.|++.|+++..... ..+++++.+. .+.+..++.+.|.+. ||.++++..+ ...+.+||+++..++ .
T Consensus 302 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~~-----~~~~~iRi~~~~~~~---~ 372 (416)
T 3isl_A 302 LAAGIKAMGLRLFGDDSCKMPVVTCVEIP-GGIDGESVRDMLLAQFGIEIASSFGP-----LAGKIWRIGTMGYSC---R 372 (416)
T ss_dssp HHHHHHHTTCCBCSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCST-----TTTTEEEEECCGGGC---S
T ss_pred HHHHHHHcCCEeccCccccCCcEEEEeCC-CCCCHHHHHHHHHHhCCEEEecCCCC-----CCCCEEEEecccCCC---c
Confidence 99999998888754321 1346666663 356788887777655 9999876422 235799999854433 2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~~ 419 (471)
+++++++.+.|.++++..
T Consensus 373 ~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 373 KENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 455999999999988753
No 13
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.4e-28 Score=243.52 Aligned_cols=332 Identities=12% Similarity=0.096 Sum_probs=234.9
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC-CCCCceeeecCChHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~-~~~~~~~v~~~sGt~A~~ 111 (471)
.....++...++++|++++...+.+.|. ... ..+.+.+++++++++|++ .+ ..+.++||++|+.
T Consensus 21 ~~l~~~~~~~~~~~v~~a~~~~~~~~~~-----------~~~-~~~~~~~~~~la~~~g~~~~~---~v~~~~g~t~a~~ 85 (386)
T 2dr1_A 21 YKLFTAGPVACFPEVLEIMKVQMFSHRS-----------KEY-RKVHMDTVERLREFLEVEKGE---VLLVPSSGTGIME 85 (386)
T ss_dssp SEECCSSSCCCCHHHHHHTTSCCCCTTS-----------HHH-HHHHHHHHHHHHHHHTCSSSE---EEEESSCHHHHHH
T ss_pred ceeecCCCcCCcHHHHHHHhcccccccC-----------HHH-HHHHHHHHHHHHHHhCCCCCc---EEEEeCChHHHHH
Confidence 3444567778899999998765543221 112 344445568899999987 21 2456778889999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh-CCCcEEEEc--
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIICG-- 188 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~-~~pklIi~~-- 188 (471)
+++.++++|||+|++.++.|.++. +. ..+...| .+++.++++ .++.+|+++|++.+++ .++++|++.
T Consensus 86 ~~~~~l~~~gd~vl~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~ 155 (386)
T 2dr1_A 86 ASIRNGVSKGGKVLVTIIGAFGKR---YK----EVVESNG--RKAVVLEYE-PGKAVKPEDLDDALRKNPDVEAVTITYN 155 (386)
T ss_dssp HHHHHHSCTTCEEEEEESSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHCTTCCEEEEESE
T ss_pred HHHHHhhcCCCeEEEEcCCchhHH---HH----HHHHHhC--CceEEEecC-CCCCCCHHHHHHHHhcCCCCcEEEEEee
Confidence 999999999999999998876521 10 0122234 355566666 3578999999999964 478888754
Q ss_pred CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCC
Q 012104 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKK 265 (471)
Q Consensus 189 ~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~ 265 (471)
+|++|...|+++|.++|+++|++|++|++|+.|.. +.++. ++|++++|+||++.+|. .|+++++++
T Consensus 156 ~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~------ 224 (386)
T 2dr1_A 156 ETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGA-----DIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSER------ 224 (386)
T ss_dssp ETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHH------
T ss_pred cCCcchhCCHHHHHHHHHHcCCeEEEEccccccCc-----cccccccCCcEEEEeccccccCCCceEEEEECHH------
Confidence 68899999999999999999999999999985532 22233 57999999999998874 499998863
Q ss_pred CCCCCcccchHhhh----------------hhcC-CCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Q 012104 266 GQPEGAVYDFEDKI----------------NFAV-FPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGN 327 (471)
Q Consensus 266 ~~~~i~~~~l~~~i----------------~~~~-~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~ 327 (471)
+.+.+ .... .....++++...++++..+++..... ++++..+++.++++++.+
T Consensus 225 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~ 295 (386)
T 2dr1_A 225 ---------FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVRE 295 (386)
T ss_dssp ---------HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 32222 1100 01122355666666776777765432 367888899999999999
Q ss_pred HHHcCCceEeeCCC--CCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHH
Q 012104 328 YLTGKGYSLVTGGT--ENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDF 405 (471)
Q Consensus 328 ~L~~~g~~i~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~ 405 (471)
.|++.|+++..+.. ..+++++.+. .+.+..++.+.|.+.||.+.++..|. ..+.+||++...+ +++++
T Consensus 296 ~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~~~~-----~~~~iRi~~~~~~----~~~~i 365 (386)
T 2dr1_A 296 GVREIGLDILAEPGHESPTITAVLTP-PGIKGDEVYEAMRKRGFELAKGYGSV-----KEKTFRIGHMGYM----KFEDI 365 (386)
T ss_dssp HHHHTTCCBSSCTTCBCSSEEEEECC-TTCCHHHHHHHHHHTTEECEECCGGG-----TTTEEEEECCSSC----CHHHH
T ss_pred HHHHcCCeeCcCccccCCceEEEEcC-CCCCHHHHHHHHHHCCeEEecCcccc-----CCCEEEEECCCCC----CHHHH
Confidence 99988888754311 3557788774 35678888888888899998765332 2468999986533 48999
Q ss_pred HHHHHHHHHHHHHH
Q 012104 406 EQIGEFLHRAVTLT 419 (471)
Q Consensus 406 ~~l~~~i~~~l~~~ 419 (471)
+++.+.|.++++..
T Consensus 366 ~~~~~~l~~~~~~~ 379 (386)
T 2dr1_A 366 QEMLDNLREVINEL 379 (386)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999887643
No 14
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.96 E-value=4.4e-28 Score=242.95 Aligned_cols=333 Identities=12% Similarity=0.041 Sum_probs=229.5
Q ss_pred cCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 31 ~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
....++.|++..++++|++++...+...+ +..+.+..+ ..++++++++|++.+.. +.+.++||++|+
T Consensus 18 ~~~~~~~pgp~~~~~~v~~a~~~~~~~~~-----------~~~~~~~~~-~~~~~la~~~g~~~~~~-~i~~~~ggt~al 84 (376)
T 3f0h_A 18 QGMLNFTVGPVMSSEEVRAIGAEQVPYFR-----------TTEFSSTML-ENEKFMLEYAKAPEGSK-AVFMTCSSTGSM 84 (376)
T ss_dssp SSCEECSSSSCCCCHHHHHHHTSCCCCCS-----------SHHHHHHHH-HHHHHHHHHHTCCTTCE-EEEESSCHHHHH
T ss_pred cCceeecCCCCCCcHHHHHHhcCCCCCCC-----------CHHHHHHHH-HHHHHHHHHhCCCCCce-EEEEcCChhHHH
Confidence 45789999999999999999976542211 112223333 45678899999875321 334467789999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--
Q 012104 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-- 188 (471)
Q Consensus 111 ~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~-- 188 (471)
.+++.++++|||+|++.++.+.++... ......|. +++.++++ .++.+|++++++.+. .++++|++.
T Consensus 85 ~~~~~~~~~~gd~vi~~~~~~~~~~~~-------~~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~~~-~~~~~v~~~~~ 153 (376)
T 3f0h_A 85 EAVVMNCFTKKDKVLVIDGGSFGHRFV-------QLCEIHEI--PYVALKLE-HGKKLTKEKLYEYDN-QNFTGLLVNVD 153 (376)
T ss_dssp HHHHHHHCCTTCCEEEEESSHHHHHHH-------HHHHHTTC--CEEEEECC-TTCCCCHHHHHTTTT-SCCCEEEEESE
T ss_pred HHHHHhccCCCCeEEEEeCChhhHHHH-------HHHHHcCC--ceEEEeCC-CCCCCCHHHHHHhhc-cCceEEEEecc
Confidence 999999999999999998765543210 01112233 44445555 457899999999764 578888755
Q ss_pred CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCC
Q 012104 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKK 265 (471)
Q Consensus 189 ~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~ 265 (471)
+|++|..+|+++|+++|+++|+++++|++|..|. .+..+. ++|++++|+||++.||.| |+++++++
T Consensus 154 ~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~-----~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~------ 222 (376)
T 3f0h_A 154 ETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLA-----DPFNMNECGADVMITGSQKVLACPPGISVIVLAPR------ 222 (376)
T ss_dssp ETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT-----SCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHH------
T ss_pred cCCcceecCHHHHHHHHHHcCCEEEEEcCccccC-----ccccccccCccEEEecCcccccCCCceEEEEECHH------
Confidence 7899999999999999999999999999987442 222232 479999999999985655 78777763
Q ss_pred CCCCCcccchHhhhhhcCC----------------CCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHH
Q 012104 266 GQPEGAVYDFEDKINFAVF----------------PSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 266 ~~~~i~~~~l~~~i~~~~~----------------~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~~ 328 (471)
+.+++..... .+...++....++++..+++.+... ++++..++..++++++.+.
T Consensus 223 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (376)
T 3f0h_A 223 ---------GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAK 293 (376)
T ss_dssp ---------HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3333322111 1123345555556666677665443 4678888888999999999
Q ss_pred HHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 329 LTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 329 L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
|++.|+.+........++.+. +.+.+..++.+.|.+. ||.+.++.-+ ...+.+||+++..+ +++|+++
T Consensus 294 L~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~gi~v~~g~~~-----~~~~~lRis~~~~~----t~e~i~~ 362 (376)
T 3f0h_A 294 IKDLPFELVSESPANGVTSVH--PTTANAYDIFLKLKDEYGIWICPNGGE-----MKDTIFRVGHIGAL----THEDNTT 362 (376)
T ss_dssp TTTSSEEECCSSBBTTEEEEE--ESSSCHHHHHHHHHHHSSEECEECCGG-----GTTTCEEEECCSSC----CHHHHHH
T ss_pred HHHcCCccCccccCceEEEEe--CCCCCHHHHHHHHHHhCCEEEecCccc-----cCCCEEEEecCCCC----CHHHHHH
Confidence 998888775432223333333 3466788887777776 9999876321 23478999986543 4899999
Q ss_pred HHHHHHHHHHH
Q 012104 408 IGEFLHRAVTL 418 (471)
Q Consensus 408 l~~~i~~~l~~ 418 (471)
+.+.|.++++.
T Consensus 363 ~~~~l~~~l~~ 373 (376)
T 3f0h_A 363 LVNAFKDLQKR 373 (376)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 15
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=7.2e-28 Score=242.85 Aligned_cols=334 Identities=13% Similarity=0.076 Sum_probs=235.0
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+.+.+++..+++.|++++...+.+.|. ...+......++++++++|++.+. ..+.++||++|+.
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~~~~------------~~~~~~~~~l~~~la~~~g~~~~~--~i~~~~g~t~a~~ 84 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILGHLH------------PETLKIMDDIKEGVRYLFQTNNIA--TFCLSASGHGGME 84 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCCTTS------------HHHHHHHHHHHHHHHHHHTCCCSE--EEEESSCHHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhccCCC------------HHHHHHHHHHHHHHHHHhCCCCCc--EEEEcCcHHHHHH
Confidence 45677788878899999998765533220 112233334568899999987531 1345678889999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++|||+|+++++.|.++. +. ..+...| .+++.++++ +++.+|++++++.+.+.++++|++. +
T Consensus 85 ~~~~~~~~~gd~vl~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 154 (393)
T 2huf_A 85 ATLCNLLEDGDVILIGHTGHWGDR---SA----DMATRYG--ADVRVVKSK-VGQSLSLDEIRDALLIHKPSVLFLTQGD 154 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHHhCCCCEEEEECCCcchHH---HH----HHHHHcC--CeeEEEeCC-CCCCCCHHHHHHHHhccCCcEEEEEccC
Confidence 999999999999999998876531 00 0111233 355556666 3578999999999875478888754 6
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~ 266 (471)
|++|...|+++|+++|+++|++|++|++|..|.. +..+. ++|++++|+||++.||.| |++++++
T Consensus 155 nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~-----~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~-------- 221 (393)
T 2huf_A 155 SSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA-----PMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSH-------- 221 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB-----CCCTTTTTCSEEECCSSSTTCCCSSCEEEEECH--------
T ss_pred CCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-----CcchhhcCccEEEECCCcccccCCCeEEEEECH--------
Confidence 8899999999999999999999999999975532 22233 579999999999887766 8888876
Q ss_pred CCCCcccchHhhhhhc---C-------------C------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 012104 267 QPEGAVYDFEDKINFA---V-------------F------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~~---~-------------~------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~ 324 (471)
++.+.+... . + ....++++...++++..+++.....++++..+++.+++++
T Consensus 222 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 294 (393)
T 2huf_A 222 -------RAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKR 294 (393)
T ss_dssp -------HHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344433321 0 0 1123566777777777777765443577888889999999
Q ss_pred HHHHHHcCCceEeeCC--CCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 325 LGNYLTGKGYSLVTGG--TENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 325 l~~~L~~~g~~i~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
+.+.|++.|++++.+. ..++++++.+. .+.+..++.+.|. ++||.+.++..+. ..+++||++...+ .+
T Consensus 295 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~~-----~~~~~Ri~~~~~~---~~ 365 (393)
T 2huf_A 295 LYRGLQDAGFELYADPKDRLSTVTTIKVP-QGVDWLKAAQYAMKTYLVEISGGLGPT-----AGQVFRIGLMGQN---AT 365 (393)
T ss_dssp HHHHHHHTTCCBSSCGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECBCCCGGG-----TTTEEEEECCGGG---CS
T ss_pred HHHHHHHcCCeeccCccccCCcEEEEEcC-CCCCHHHHHHHHHHhCCEEEecCcccc-----cCCEEEEEcccCc---CC
Confidence 9999998888875321 12346677764 3567888877775 5699998765332 2478999983322 23
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~ 418 (471)
+++++++.+.|.++++.
T Consensus 366 ~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 366 TERVDRVLQVFQEAVAA 382 (393)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999999988764
No 16
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=4.9e-28 Score=240.10 Aligned_cols=337 Identities=11% Similarity=-0.008 Sum_probs=232.5
Q ss_pred eeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHH
Q 012104 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAA 113 (471)
Q Consensus 34 i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~ 113 (471)
+.+.|++..+++.|++++...+... +++ ...+.++ ..++++++++|++.+ ..+.++||++|+.++
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~~--------~~~---~~~~~~~-~l~~~la~~~g~~~~---~i~~~~g~t~a~~~~ 67 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLHH--------RTE---AAREVFL-KARGLLREAFRTEGE---VLILTGSGTLAMEAL 67 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCCT--------TSH---HHHHHHH-HHHHHHHHHHTCSSE---EEEEESCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCCc--------cCH---HHHHHHH-HHHHHHHHHhCCCCc---eEEEcCchHHHHHHH
Confidence 5778899999999999998765321 111 2222233 346788999998742 245567888999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCC
Q 012104 114 YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSA 191 (471)
Q Consensus 114 ~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~ 191 (471)
+.++++|||+|++.++.|.++. .. ..+...| .+++.++++ +++.+|++++++ .++++|++. +||
T Consensus 68 ~~~~~~~gd~vl~~~~~~~~~~-~~------~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~----~~~~~v~~~~~~np 133 (352)
T 1iug_A 68 VKNLFAPGERVLVPVYGKFSER-FY------EIALEAG--LVVERLDYP-YGDTPRPEDVAK----EGYAGLLLVHSETS 133 (352)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH-HH------HHHHHTT--CEEEEEECC-TTCCCCTTTSCC----SSCSEEEEESEETT
T ss_pred HHhccCCCCeEEEEeCCchhHH-HH------HHHHHcC--CceEEEeCC-CCCCCCHHHHhc----cCCcEEEEEEecCC
Confidence 9999999999999998876642 00 0111233 355566665 456789988876 468887754 688
Q ss_pred CCccccHHHHHHHHHHh--CCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCC-CCCC
Q 012104 192 YPRDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPK-PPKK 265 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~--g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~-~~~~ 265 (471)
+|...|+++|.++|+++ |+++++|++|..|. .+.++. ++|++++|+||++.||.| |+++++++.. ....
T Consensus 134 tG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~ 208 (352)
T 1iug_A 134 TGALADLPALARAFKEKNPEGLVGADMVTSLLV-----GEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKP 208 (352)
T ss_dssp TTEECCHHHHHHHHHHHCTTCEEEEECTTTBTT-----BCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCC
T ss_pred cceecCHHHHHHHHHhhCCCCEEEEECCccccC-----cceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhC
Confidence 99999999999999999 99999999997542 222233 579999999999888865 8888876310 0000
Q ss_pred CCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCee
Q 012104 266 GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHL 345 (471)
Q Consensus 266 ~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~ 345 (471)
+. ..+++...+.........++++...++++..+++.... ++++..+++.++++++.+.|++.|++++.+....++
T Consensus 209 -~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~ 284 (352)
T 1iug_A 209 -RG--YYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAV 284 (352)
T ss_dssp -CS--STTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTC
T ss_pred -CC--ceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeE
Confidence 00 00011111111101112356677777777777776544 377888889999999999999889887533214557
Q ss_pred EEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 346 VLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 346 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+++.+.. +.+..++.+.|.+.||.+.++..+ ...+++||++...+ ++++++++.+.|.++++.
T Consensus 285 ~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~-----~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 285 AAFYLPE-GVPYARVKEAFAQRGAVIAGGQGP-----LKGKVFRLSLMGAY----DRYEALGVAGMFREVLEE 347 (352)
T ss_dssp EEEECCT-TCCHHHHHHHHHTTTEECEECCGG-----GTTTEEEECCCSSC----CHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC-CCCHHHHHHHHHHCCEEEEeCCCc-----cCCCEEEEEccccC----CHHHHHHHHHHHHHHHHH
Confidence 7887753 567888988888889999876522 13478999986543 379999999999887754
No 17
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=2.9e-28 Score=246.14 Aligned_cols=333 Identities=18% Similarity=0.160 Sum_probs=233.9
Q ss_pred eeEecCCC---CCcHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 34 IELIASEN---FTSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 34 i~li~s~n---~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~-~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
|++..+.. ..+|.+.+++...+.. +..++++.++..|. +...++ ++++++++|.+. .+.++||++|
T Consensus 46 id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~~~~~-----~i~~~sGt~a 115 (399)
T 3tqx_A 46 LNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMASVRFICGTQTIHKEL----EKDISEFLGTDD-----TILYSSCFDA 115 (399)
T ss_dssp EECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCCCCCCCBHHHHHH----HHHHHHHHTCSE-----EEEESCHHHH
T ss_pred EEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCcCccccCchHHHHH----HHHHHHHHCCCc-----EEEECchHHH
Confidence 55555532 1368999999887754 44556666665443 334444 467888999863 4667899999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC-----CCcE
Q 012104 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPKL 184 (471)
Q Consensus 110 ~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~-----~pkl 184 (471)
+..++.++++|||+|++.+|.|+++.. .+...|. +++.++ .+|++++++.+.+. ++++
T Consensus 116 ~~~~l~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 116 NGGLFETLLGPEDAIISDELNHASIID---------GIRLCKA--QRYRYK------NNAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp HHTTHHHHCCTTCEEEEETTCCHHHHH---------HHHSCCS--EEEEEC------TTCTTHHHHHHHHHHTTTCSSEE
T ss_pred HHHHHHHhcCCCCEEEECCcccHHHHH---------HHHHcCC--ceeEeC------CCCHHHHHHHHHhhhccCCCceE
Confidence 999999999999999999998876542 1223343 444443 26788999988753 6888
Q ss_pred EEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCC----CC-CCCccEEEeCCCCcCCCCCeEEEEee
Q 012104 185 IICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA----NP-FEYCHIVTTTTHKSLRGPRAGMIFYR 257 (471)
Q Consensus 185 Ii~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~----~p-~~~aDiv~~s~~K~l~GprgG~i~~~ 257 (471)
|++. +||+|...|+++|.++|+++|++|++|++|+.|+......+ .. ....|++++|+||++.|++||+++++
T Consensus 179 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~ 258 (399)
T 3tqx_A 179 IATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGH 258 (399)
T ss_dssp EEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEEC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcC
Confidence 8755 68999999999999999999999999999976653221100 01 12568999999999988999999998
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCC-CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceE
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~-~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i 336 (471)
+ ++.+.+.....+. ..++++...+++...+++... .+.++..+++.++++++.+.|++.|+++
T Consensus 259 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 322 (399)
T 3tqx_A 259 K---------------EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQL 322 (399)
T ss_dssp H---------------HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCB
T ss_pred H---------------HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 7 4555444321111 123455555556656666542 3567888899999999999999889887
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. . ..++++++.+.. +.+..++.+.|.++||.+.+...|.. +...+.+||+++..+ ++++++++.+.|.+++
T Consensus 323 ~-~-~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~~--~~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~ 393 (399)
T 3tqx_A 323 V-P-GNHPIIPVMLGD-AQLATNMADHLLQEGIYVVGFSYPVV--PMGKARIRVQMSAVH----TQQQLDRAIEAFGQVG 393 (399)
T ss_dssp C-C-CSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTTS--CTTCEEEEEECCTTC----CHHHHHHHHHHHHHHH
T ss_pred C-C-CCCCEEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCCCCC--CCCCceEEEEeecCC----CHHHHHHHHHHHHHHH
Confidence 5 2 345567777653 23456788888889999987543321 223578999986433 4899999999999887
Q ss_pred HH
Q 012104 417 TL 418 (471)
Q Consensus 417 ~~ 418 (471)
+.
T Consensus 394 ~~ 395 (399)
T 3tqx_A 394 KK 395 (399)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 18
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=5.8e-28 Score=240.51 Aligned_cols=344 Identities=14% Similarity=0.070 Sum_probs=227.1
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~-~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
.+++.+++..++|+|++++.+.+.+ ++.... +...+ .++++++++|.+. .+...+.++||++|+.
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~~~---------~~~~~~~~~~~~----l~~~la~~~g~~~-~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDSCT---------WDDDYNIGVVEQ----IRQQLTALATASE-GYTSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCCCT---------TSHHHHTTTHHH----HHHHHHHHHCSSS-SEEEEEEESCHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhhcC---------CCHHHHHHHHHH----HHHHHHHHhCCCC-cCcEEEEecChHHHHH
Confidence 5788888777899999998764311 110000 22233 3467888999321 1112455778899999
Q ss_pred HHHHHhcCCCCEEEEeC-CCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC-CCcEEEE-c
Q 012104 112 AAYTAVLEPHDRIMGLD-LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-RPKLIIC-G 188 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~-~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~-~pklIi~-~ 188 (471)
+++.++++|||+|++.+ +.|++.+.+ .+...|. +++.++++ +++.+|++++++++.+. ++++|++ +
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~~~~--------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~ 139 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGARMVE--------MAGLMGI--AHHAYDCG-EVARPDVQAIDAILNADPTISHIAMVH 139 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHHHHH--------HHHHHTC--CEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHHHhcCCCCeEEEEeCCCccHHHHH--------HHHHhCC--ceEEEeCC-CCCCCCHHHHHHHHhcCCCeEEEEEec
Confidence 99999999999988776 443321110 1122343 44555555 45789999999999764 5787764 4
Q ss_pred -CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCC-C
Q 012104 189 -GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-P 263 (471)
Q Consensus 189 -~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~-~ 263 (471)
+||+|...|+++|+++|+++|++|++|++|+.|.. +.++. ++|++++|+||++.||.| |++++++++.. .
T Consensus 140 ~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~-----~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~ 214 (366)
T 1m32_A 140 SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI-----PMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAAC 214 (366)
T ss_dssp EETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS-----CCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTC
T ss_pred ccCCcceecCHHHHHHHHHHcCCEEEEECCccccCc-----CccccccCccEEEecCcccccCCCceEEEEECHHHHHhh
Confidence 67899999999999999999999999999975432 22333 479999999999878876 99999874211 1
Q ss_pred CCCCCCCcccchHhhhhh--cCCCCCCCCCcHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHcCCceEeeCC
Q 012104 264 KKGQPEGAVYDFEDKINF--AVFPSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAVALGNYLTGKGYSLVTGG 340 (471)
Q Consensus 264 ~~~~~~i~~~~l~~~i~~--~~~~~~~g~p~~~~iaa~a~al~~~~~~~-~~~~~~~~~~na~~l~~~L~~~g~~i~~~~ 340 (471)
....... .+++...... .......++++...++++..+++.....+ +++..+++.++++++.+.|++.|++++...
T Consensus 215 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 293 (366)
T 1m32_A 215 KGHSRSL-SLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDD 293 (366)
T ss_dssp TTCCSCS-TTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG
T ss_pred cCCCCCc-cccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCc
Confidence 0000000 0000000000 00011123556666667767777654433 677888899999999999998888765321
Q ss_pred --CCCeeEEEEccC-CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 341 --TENHLVLWDLRP-LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 341 --~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
..++++++.+.. .+.+..++.+.|.++||.+.++..+ ..+++||+++..+ ++++++++.+.|.++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~------~~~~iRi~~~~~~----~~~~i~~~~~~l~~~~~ 363 (366)
T 1m32_A 294 ELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS------QSDCFRIGNIGEV----YAADITALLTAIRTAMY 363 (366)
T ss_dssp GGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCS------SSCEEEEECCSSC----CHHHHHHHHHHHHHHCT
T ss_pred hhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCC------CCCEEEEecCCCC----CHHHHHHHHHHHHHHHH
Confidence 234577888753 1567888888888889999876433 2478999986543 48999999999988764
No 19
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.96 E-value=5.9e-28 Score=243.14 Aligned_cols=338 Identities=14% Similarity=0.122 Sum_probs=235.8
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC--CCCCCceeeecCChH
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYSGS 107 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~--~~~~~~~~v~~~sGt 107 (471)
+.|+|..+++. .+|.|++++...+.+.. .+|+.. ...+++...+++++.+|. +.+ ..+.+++|+
T Consensus 28 ~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~---~i~~~~g~~ 95 (391)
T 3dzz_A 28 KELPMWIAEMDFKIAPEIMASMEEKLKVAA-FGYESV--------PAEYYKAVADWEEIEHRARPKED---WCVFASGVV 95 (391)
T ss_dssp TCEECCSSCCSSCCCHHHHHHHHHHHTTCC-CCCBCC--------CHHHHHHHHHHHHHHHSCCCCGG---GEEEESCHH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhcCc-CCCCCC--------CHHHHHHHHHHHHHHhCCCCCHH---HEEECCCHH
Confidence 57888777643 47899999988775432 233221 234555566788888884 332 234456668
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec--CCCCCCCHHHHHHHhhhCCCcEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN--SSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~--~~~~~iD~~~le~~~~~~~pklI 185 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++ ..++.+|++++++++++.++++|
T Consensus 96 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v 164 (391)
T 3dzz_A 96 PAISAMVRQFTSPGDQILVQEPVYNMFYS---------VIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMM 164 (391)
T ss_dssp HHHHHHHHHHSCTTCEEEECSSCCHHHHH---------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHhCCCCCeEEECCCCcHHHHH---------HHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEE
Confidence 89999999999999999999998876532 1223343 45555553 23355999999999975678887
Q ss_pred EE-c-CCCCCcc---ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----Ccc--EEEeCCCCc--CCCCCe
Q 012104 186 IC-G-GSAYPRD---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCH--IVTTTTHKS--LRGPRA 251 (471)
Q Consensus 186 i~-~-~s~~g~~---~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aD--iv~~s~~K~--l~Gprg 251 (471)
++ + +||+|.. .++++|+++|+++|++||+|++|. ++...|..+.++. ..| ++++|+||+ ++|+|.
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~ 243 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHG-DLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHA 243 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCC
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccc-cccCCCCCceehhhcCccccCcEEEEEeChhhccccchhh
Confidence 64 4 6889988 467788899999999999999997 5555543333332 256 999999999 478889
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
|+++++++ ++.+.+..........+++...+++...++... ...+++..++..++++++.+.|++
T Consensus 244 G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 244 ACAIIPNP--------------DLRARAEESFFLAGIGEPNLLAIPAAIAAYEEG-HDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp EEEECCSH--------------HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCH--------------HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999743 555555433111111223444445555566552 335678888889999999999998
Q ss_pred C--CceEeeCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 332 K--GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 332 ~--g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
. |+++. .+..++++|+++...+.+..++.+.| +++||.+.++..++.. ..+.+||++. + ++++++++
T Consensus 309 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRis~~--~----~~~~i~~~ 378 (391)
T 3dzz_A 309 EVPEVKVL-DSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGN---GHEFVRINLA--C----PKELVIDG 378 (391)
T ss_dssp HCTTSEEC-CCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTT---GGGEEEEECC--S----CHHHHHHH
T ss_pred hCCCcEEe-ccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCC---CCCEEEEEec--C----CHHHHHHH
Confidence 4 88875 34556677888876567888888877 5999999987655422 2579999974 2 47899999
Q ss_pred HHHHHHHHHH
Q 012104 409 GEFLHRAVTL 418 (471)
Q Consensus 409 ~~~i~~~l~~ 418 (471)
.+.|.++++.
T Consensus 379 l~~l~~~l~~ 388 (391)
T 3dzz_A 379 MQRLKQGVLN 388 (391)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 20
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.4e-27 Score=240.90 Aligned_cols=329 Identities=14% Similarity=0.050 Sum_probs=230.7
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~ 112 (471)
.+.+.+++..++++|++++...+.+.| + .. ...+.+.+++++++++|++.+. ..+.++||++|+.+
T Consensus 35 ~~l~~~~~~~~~~~v~~a~~~~~~~~~----------~-~~-~~~~~~~~~~~la~~~g~~~~~--~v~~t~g~t~al~~ 100 (393)
T 1vjo_A 35 RLLLGPGPSNAHPSVLQAMNVSPVGHL----------D-PA-FLALMDEIQSLLRYVWQTENPL--TIAVSGTGTAAMEA 100 (393)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCCCCTT----------S-HH-HHHHHHHHHHHHHHHHTCCCSC--EEEESSCHHHHHHH
T ss_pred ceeccCCCCCCCHHHHHHHhccccccc----------C-HH-HHHHHHHHHHHHHHHhCCCCCc--EEEEeCchHHHHHH
Confidence 455566777889999999976654322 1 11 2233334568899999986531 13556788899999
Q ss_pred HHHHhcCCCCEEEEeCCCCCC--cccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--
Q 012104 113 AYTAVLEPHDRIMGLDLPSGG--HLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-- 188 (471)
Q Consensus 113 ~~~all~pGD~Vl~~~~~~~g--~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~-- 188 (471)
++.++++|||+|++.+|.|.+ +.. .+...| .+++.++++ .++.+|+++|++.+.+.++++|++.
T Consensus 101 ~~~~~~~~gd~Vl~~~~~~~~~~~~~---------~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~ 168 (393)
T 1vjo_A 101 TIANAVEPGDVVLIGVAGYFGNRLVD---------MAGRYG--ADVRTISKP-WGEVFSLEELRTALETHRPAILALVHA 168 (393)
T ss_dssp HHHHHCCTTCEEEEEESSHHHHHHHH---------HHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred HHHhccCCCCEEEEEcCChhHHHHHH---------HHHHcC--CceEEEecC-CCCCCCHHHHHHHHhhCCceEEEEecc
Confidence 999999999999999988765 211 112234 355566666 3578999999999875478887754
Q ss_pred CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCC
Q 012104 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKK 265 (471)
Q Consensus 189 ~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~ 265 (471)
+||+|...|+++|+++|+++|++|++|++|..|. .+.++. ++|++++|+||++.+|.+ |++++++
T Consensus 169 ~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~-----~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~------- 236 (393)
T 1vjo_A 169 ETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG-----VPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSS------- 236 (393)
T ss_dssp ETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTT-----SCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECH-------
T ss_pred CCCcceeccHHHHHHHHHHcCCEEEEECCccccC-----cCCcccccCccEEEEcCcccccCCCceEEEEECH-------
Confidence 6889999999999999999999999999998542 222333 579999999999877654 9999876
Q ss_pred CCCCCcccchHhhhhhc-------CC------------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 012104 266 GQPEGAVYDFEDKINFA-------VF------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (471)
Q Consensus 266 ~~~~i~~~~l~~~i~~~-------~~------------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~ 326 (471)
++.+.+... .+ ....|+++...++++..+++.....++++..+++.++++++.
T Consensus 237 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 237 --------RAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp --------HHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 344333211 00 111226666667777777776544456788889999999999
Q ss_pred HHHHcCCceEeeCCC--CCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHH
Q 012104 327 NYLTGKGYSLVTGGT--ENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEK 403 (471)
Q Consensus 327 ~~L~~~g~~i~~~~~--~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~ 403 (471)
+.|++.|+++..+.. ..+++++.+. .+.+..++.+.|.+. ||.+.++..+. .++++||++...+ ..++
T Consensus 309 ~~L~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRis~~~~~---~~~~ 379 (393)
T 1vjo_A 309 ERLEDIGLSLHVEKEYRLPTLTTVCIP-DGVDGKAVARRLLNEHNIEVGGGLGEL-----AGKVWRVGLMGFN---SRKE 379 (393)
T ss_dssp HHHHHTTCCBSSCGGGBCSSEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGGG-----TTTEEEEECCGGG---CSHH
T ss_pred HHHHHcCCcccCCccccCCcEEEEEcC-CCCCHHHHHHHHHhhCCEEEecCcccc-----CCCEEEEeCCccC---ChHH
Confidence 999988888754211 1345667663 356788887777766 99998875432 2478999953222 2367
Q ss_pred HHHHHHHHHHHHH
Q 012104 404 DFEQIGEFLHRAV 416 (471)
Q Consensus 404 d~~~l~~~i~~~l 416 (471)
+++++.+.|.+++
T Consensus 380 ~i~~~~~~l~~~l 392 (393)
T 1vjo_A 380 SVDQLIPALEQVL 392 (393)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8999999988765
No 21
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=9.3e-28 Score=241.56 Aligned_cols=334 Identities=14% Similarity=0.079 Sum_probs=232.5
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+.+.+++..++++|++++...+.+.+ + ..+ ..+....++++++++|.+... ..+.++||++|+.
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~~~--------~---~~~-~~~~~~l~~~la~~~~~~~~~--~v~~~~gg~~al~ 88 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIGHM--------Q---KEM-LQIMEEIKQGIQYVFQTRNPL--TLVVSGSGHCAME 88 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCCTT--------S---HHH-HHHHHHHHHHHHHHHTCCCSE--EEEESCCTTTHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccCcc--------c---HHH-HHHHHHHHHHHHHHhCCCCCc--EEEEeCCcHHHHH
Confidence 4577888888899999999875432211 1 112 223333467889999987532 1355778899999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++|||+|++..+.|.++. +. ..+...| .+++.++++ .++.+|++++++.+.+.++++|++. +
T Consensus 89 ~~~~~~~~~gd~vl~~~~~~~~~~---~~----~~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~ 158 (393)
T 3kgw_A 89 TALFNLLEPGDSFLTGTNGIWGMR---AA----EIADRIG--ARVHQMIKK-PGEHYTLQEVEEGLAQHKPVLLFLVHGE 158 (393)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHhcCCCCCEEEEEeCCchhHH---HH----HHHHHcC--CceEEEeCC-CCCCCCHHHHHHHHhhCCCcEEEEeccC
Confidence 999999999999999976543211 00 0112234 345555555 4468999999999986689987744 6
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~ 266 (471)
||+|...|+++|+++|+++|++|++|++|..|.. +..+. ++|++++|+||++.||.| |+++++++
T Consensus 159 nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~-----~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~------- 226 (393)
T 3kgw_A 159 SSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGV-----PIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDK------- 226 (393)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS-----CCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHH-------
T ss_pred CcchhhccHHHHHHHHHHcCCEEEEECCccccCc-----ccchhhcCCCEEEecCcccccCCCceeEEEECHH-------
Confidence 8899999999999999999999999999975521 22222 579999999999877665 88888763
Q ss_pred CCCCcccchHhhhhhcCC----------------------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 012104 267 QPEGAVYDFEDKINFAVF----------------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~~~~----------------------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~ 324 (471)
+.+.+..... ....++++...++++..++......++++..+++.+++++
T Consensus 227 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 298 (393)
T 3kgw_A 227 --------AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAH 298 (393)
T ss_dssp --------HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333221100 1123456777777777777765554578889999999999
Q ss_pred HHHHHHcCCceEeeCCC---CCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCC
Q 012104 325 LGNYLTGKGYSLVTGGT---ENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 325 l~~~L~~~g~~i~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~ 400 (471)
+.+.|++.|++++.+.. ...++++.+. .+.+..++.+.|.+. ||.+.++..+. ..+++||++...+ .
T Consensus 299 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~---~ 369 (393)
T 3kgw_A 299 LHKHLQEMGLKFFVKDPEIRLPTITTVTVP-AGYNWRDIVSYVLDHFSIEISGGLGPT-----EERVLRIGLLGYN---A 369 (393)
T ss_dssp HHHHHHHTTCCBSSSSGGGBCSSEEEEECC-TTBCHHHHHHHHHHHHCEECBCCCGGG-----TTTEEEEECCGGG---C
T ss_pred HHHHHHHcCCeeccCChhhcCCeEEEEeCC-CCCCHHHHHHHHHHhCCEEEeCCcccC-----CCCEEEEEecccC---C
Confidence 99999998888753211 2345556653 356788887777665 99998765332 3579999972221 2
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~~ 418 (471)
++++++++.+.|.++++.
T Consensus 370 ~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 370 TTENVDRVAEALREALQH 387 (393)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 479999999999998864
No 22
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.1e-27 Score=237.45 Aligned_cols=329 Identities=12% Similarity=0.034 Sum_probs=230.4
Q ss_pred eeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHH
Q 012104 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAA 113 (471)
Q Consensus 34 i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~ 113 (471)
+.+.|++..+++.|++++.+.+.+. ++ .... ......++++++++|++.+.. ..+.++||++|+.++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~~--------~~---~~~~-~~~~~l~~~la~~~g~~~~~~-~v~~t~g~t~a~~~~ 68 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRGH--------LD---PEVL-RVNRAIQERLAALFDPGEGAL-VAALAGSGSLGMEAG 68 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCCT--------TC---HHHH-HHHHHHHHHHHHHHCCCTTCE-EEEESSCHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhcccccc--------cC---HHHH-HHHHHHHHHHHHHhCCCCCCc-eEEEcCCcHHHHHHH
Confidence 5678899999999999987665331 11 1222 223345688999999862111 235567778999999
Q ss_pred HHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCC
Q 012104 114 YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSA 191 (471)
Q Consensus 114 ~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~ 191 (471)
+.++++ |+|++.++.|.++ . +. ..+...| .+++.++++ +++.+|++++++.+.+.++++|++. +||
T Consensus 69 ~~~~~~--d~vl~~~~~~~~~-~--~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 136 (353)
T 2yrr_A 69 LANLDR--GPVLVLVNGAFSQ-R--VA----EMAALHG--LDPEVLDFP-PGEPVDPEAVARALKRRRYRMVALVHGETS 136 (353)
T ss_dssp HHTCSC--CCEEEEECSHHHH-H--HH----HHHHHTT--CCEEEEECC-TTSCCCHHHHHHHHHHSCCSEEEEESEETT
T ss_pred HHHhcC--CcEEEEcCCCchH-H--HH----HHHHHcC--CceEEEeCC-CCCCCCHHHHHHHHHhCCCCEEEEEccCCC
Confidence 999887 8999998777653 1 00 0112234 345556666 4578999999999975478888754 678
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCC
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQP 268 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~ 268 (471)
+|...|+++|.++|+++|+++++|++|..|. .+.++. ++|++++|+||++.||.| |+++++++
T Consensus 137 tG~~~~~~~i~~l~~~~~~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~--------- 202 (353)
T 2yrr_A 137 TGVLNPAEAIGALAKEAGALFFLDAVTTLGM-----LPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLE--------- 202 (353)
T ss_dssp TTEECCHHHHHHHHHHHTCEEEEECTTTTTT-----SCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHH---------
T ss_pred cceecCHHHHHHHHHHcCCeEEEEcCccccc-----ccccccccCceEEEecCcccccCCCceEEEEECHH---------
Confidence 9999999999999999999999999996442 222333 579999999999877665 99988873
Q ss_pred CCcccchHhhhhh--------------cCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 012104 269 EGAVYDFEDKINF--------------AVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334 (471)
Q Consensus 269 ~i~~~~l~~~i~~--------------~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~ 334 (471)
+.+++.. .......++++...++++..+++.....++++..+++.++++++.+.|++.|+
T Consensus 203 ------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 276 (353)
T 2yrr_A 203 ------ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGF 276 (353)
T ss_dssp ------HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 2222220 00011234566666667666777654444778888999999999999988898
Q ss_pred eEeeCC-CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHH-HHHHHH
Q 012104 335 SLVTGG-TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFE-QIGEFL 412 (471)
Q Consensus 335 ~i~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~-~l~~~i 412 (471)
+++.+. ..++++++.+. .+.+..++.+.|.+.||.+.++..+. ..+++||+++...+ ++|++ ++.+.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~g~~~~-----~~~~iRi~~~~~~~----~~~~~~~~~~~l 346 (353)
T 2yrr_A 277 RPYPKASPLPTVLVVRPP-EGVDADRLVRALYAEGVAVAGGIGPT-----RGQVLRLGLMGEGA----RREAYQAFLKAL 346 (353)
T ss_dssp EESCSSSBCTTEEEEECC-TTCCHHHHHHHHHHTTEECEECCGGG-----TTTCEEEECSGGGS----CHHHHHHHHHHH
T ss_pred ccccCccCCCeEEEEECC-CCCCHHHHHHHHHHCCEEEeCCcccc-----CCCeEEEecCccCC----HHHHHHHHHHHH
Confidence 875422 14566677764 35678889888888899998765432 24689999854333 57888 999999
Q ss_pred HHHHH
Q 012104 413 HRAVT 417 (471)
Q Consensus 413 ~~~l~ 417 (471)
.++++
T Consensus 347 ~~~l~ 351 (353)
T 2yrr_A 347 DRALA 351 (353)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
No 23
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.96 E-value=2.2e-27 Score=239.41 Aligned_cols=352 Identities=14% Similarity=0.063 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHhccCCeeEecCCCCC--cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCC
Q 012104 18 EIHDLIEKEKRRQCRGIELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95 (471)
Q Consensus 18 ~~~~~~~~e~~~~~~~i~li~s~n~~--s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~ 95 (471)
+++....+.....++.|+|..+++.. +|.|++++...+.+.. .+|+.. .....+++...+++.+.+|.+..
T Consensus 18 ~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~ 90 (391)
T 3h14_A 18 DVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-LGYTVA------LGLPALRQRIARLYGEWYGVDLD 90 (391)
T ss_dssp HHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CChHHHHHHHHHHHHHHhCCCCC
Confidence 34444333333345788998887643 7889999988775432 233321 11234444445666666674322
Q ss_pred CCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHH
Q 012104 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLE 174 (471)
Q Consensus 96 ~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le 174 (471)
.- ..+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++++ ++.+|+++++
T Consensus 91 ~~-~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~v~~~~~~~~~~d~~~l~ 158 (391)
T 3h14_A 91 PG-RVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQ---------ILRALG--LVPVDLPTAPENRLQPVPADFA 158 (391)
T ss_dssp GG-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHTT--CEEEEEECCGGGTTSCCHHHHT
T ss_pred HH-HEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHH---------HHHHcC--CEEEEeecCcccCCCCCHHHHH
Confidence 11 23556677899999999999999999999998876532 122334 35555665543 3578999988
Q ss_pred HHhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcC-
Q 012104 175 EKALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSL- 246 (471)
Q Consensus 175 ~~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l- 246 (471)
+. ++++|++ + +||+|..++ +++|+++|+++|+++++|++|. ++.+.+...+... ..+++++|+||++
T Consensus 159 ~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~i~~~s~sK~~g 233 (391)
T 3h14_A 159 GL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYH-GIEYEAKAVTALELTDECYVINSFSKYFS 233 (391)
T ss_dssp TS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSCCCCGGGTCSSSEEEEESSSTTC
T ss_pred hc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcch-hcccCCCCcChhhcCCCEEEEEechhccC
Confidence 75 6887764 4 788999987 6788899999999999999997 5555543322222 3458999999996
Q ss_pred -CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 012104 247 -RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 247 -~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l 325 (471)
+|.|.|++++++ ++.+.+........ .+++....++...++. ....+++..+++.++++.+
T Consensus 234 ~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 234 MTGWRVGWMVVPE---------------DQVRVVERIAQNMF-ICAPHASQVAALAALD--CDAELQANLDVYKANRKLM 295 (391)
T ss_dssp CTTSCCEEEECCG---------------GGHHHHHHHHHHTT-CCCCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred CccceeEEEEeCH---------------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHH
Confidence 778889999887 45554443222222 2333434344434554 2345678888888999999
Q ss_pred HHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHH-HhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHH
Q 012104 326 GNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKL-CDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKD 404 (471)
Q Consensus 326 ~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d 404 (471)
.+.|++.|+..+..+..++++|+++...+.+..++.+. ++++||.+.++..++.. ...+++||++.. ++++
T Consensus 296 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~--~~~~~iRis~~~------~~~~ 367 (391)
T 3h14_A 296 LERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPE--RGAGTLRFSYAR------ATAD 367 (391)
T ss_dssp HHHHHHHTCCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTT--TGGGEEEEECCS------CHHH
T ss_pred HHHHHHcCCCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCC--CCCCeEEEEecC------CHHH
Confidence 99998877665444555677888886556678888665 45569999987765431 235799999843 3689
Q ss_pred HHHHHHHHHHHHHHH
Q 012104 405 FEQIGEFLHRAVTLT 419 (471)
Q Consensus 405 ~~~l~~~i~~~l~~~ 419 (471)
+++..+.|.++++..
T Consensus 368 i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 368 IEEGLDRLEAFMQAR 382 (391)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998887754
No 24
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=2.8e-27 Score=238.36 Aligned_cols=328 Identities=16% Similarity=0.033 Sum_probs=229.3
Q ss_pred ecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHH
Q 012104 37 IASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA 116 (471)
Q Consensus 37 i~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~a 116 (471)
.++...+++.|++++...+.+. ++ ....+.++ ..++++++++|++.+ ..+.++||++|+.+++.+
T Consensus 14 ~~~~~~~~~~v~~a~~~~~~~~--------~~---~~~~~~~~-~l~~~la~~~g~~~~---~v~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 14 TAGPVNAYPEVLRGLGRTVLYD--------YD---PAFQLLYE-KVVDKAQKAMRLSNK---PVILHGEPVLGLEAAAAS 78 (392)
T ss_dssp SSSCCCCCHHHHHHTTSCCCCT--------TS---HHHHHHHH-HHHHHHHHHTTCSSC---CEEESSCTHHHHHHHHHH
T ss_pred cCCCcCCCHHHHHHHhcccccc--------cc---HHHHHHHH-HHHHHHHHHhCCCCC---EEEEeCCchHHHHHHHHH
Confidence 3555677899999987655331 11 12222233 346788999998743 245567888999999999
Q ss_pred hcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh-CCCcEEEEc--CCCCC
Q 012104 117 VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIICG--GSAYP 193 (471)
Q Consensus 117 ll~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~-~~pklIi~~--~s~~g 193 (471)
+++|||+|+++++.|.++.. . ..+...| .+++.++++ +++.+|++++++.+++ .++++|++. +||+|
T Consensus 79 ~~~~gd~Vl~~~~~~~~~~~-~------~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG 148 (392)
T 2z9v_A 79 LISPDDVVLNLASGVYGKGF-G------YWAKRYS--PHLLEIEVP-YNEAIDPQAVADMLKAHPEITVVSVCHHDTPSG 148 (392)
T ss_dssp HCCTTCCEEEEESSHHHHHH-H------HHHHHHC--SCEEEEECC-TTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGT
T ss_pred hcCCCCEEEEecCCcccHHH-H------HHHHHcC--CceEEeeCC-CCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCc
Confidence 99999999999987755410 0 0111133 345556666 3467999999999964 478888754 67899
Q ss_pred ccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCCC
Q 012104 194 RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEG 270 (471)
Q Consensus 194 ~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~i 270 (471)
...|+++|.++|+++|+++++|++|..|. .+.++. ++|++++|+||++.||.| |+++++++
T Consensus 149 ~~~~l~~i~~l~~~~~~~li~D~a~~~g~-----~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~----------- 212 (392)
T 2z9v_A 149 TINPIDAIGALVSAHGAYLIVDAVSSFGG-----MKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSER----------- 212 (392)
T ss_dssp EECCHHHHHHHHHHTTCEEEEECTTTBTT-----BSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHH-----------
T ss_pred eeccHHHHHHHHHHcCCeEEEEcccccCC-----cccccccccceEEEecCcccccCCCceeEEEECHH-----------
Confidence 99999999999999999999999997542 222333 579999999999888766 89988763
Q ss_pred cccchHhhhhhc-------------------CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 271 AVYDFEDKINFA-------------------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 271 ~~~~l~~~i~~~-------------------~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
+.+++... ......++++...++++..+++.....++++..++..++++++.+.|++
T Consensus 213 ----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 288 (392)
T 2z9v_A 213 ----AWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA 288 (392)
T ss_dssp ----HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33333210 0011235566667777767777654434778888899999999999988
Q ss_pred CCceEeeCCC---CCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCC-CCCcCCCHHHHH
Q 012104 332 KGYSLVTGGT---ENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPA-MTSRGLLEKDFE 406 (471)
Q Consensus 332 ~g~~i~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~-~t~~g~~~~d~~ 406 (471)
.|+++..+.. ..+++++.+. .+.+..++.+.|.+. ||.+.++..+. ..+++||++.. . .++++++
T Consensus 289 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~~gi~v~~g~~~~-----~~~~lRi~~~~~~----~~~~~i~ 358 (392)
T 2z9v_A 289 MGLSVWAASDSIASPTTTAVRTP-DGVDEKALRQAARARYGVVFSSGRGET-----LGKLTRIGHMGPT----AQPIYAI 358 (392)
T ss_dssp TTCCBSSSSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCEECEECCGGG-----TTTEEEEECCGGG----CSHHHHH
T ss_pred cCCeeccCCccccCCceEEEECC-CCCCHHHHHHHHHhcCCEEEecCCCCC-----CCCeEEEeCcccc----cCHHHHH
Confidence 8887754121 3556777764 356788888888776 99998765332 24789999522 2 3489999
Q ss_pred HHHHHHHHHHHHH
Q 012104 407 QIGEFLHRAVTLT 419 (471)
Q Consensus 407 ~l~~~i~~~l~~~ 419 (471)
++.+.|.++++..
T Consensus 359 ~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 359 AALTALGGAMNAA 371 (392)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999987643
No 25
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.96 E-value=3.1e-27 Score=241.55 Aligned_cols=334 Identities=16% Similarity=0.116 Sum_probs=231.9
Q ss_pred eeEecCCC---CCcHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 34 IELIASEN---FTSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 34 i~li~s~n---~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~-~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
|++..+.+ ..+|.|++++...+.. |..++++.|+..|. +...+++ +++++++|++. .+.++||++|
T Consensus 67 id~~~~~~lg~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~G~~~~~~~l~----~~la~~~g~~~-----~i~~~sGs~a 136 (427)
T 2w8t_A 67 ILLGTYNYMGMTFDPDVIAAGKEALEK-FGSGTCGSRMLNGTFHDHMEVE----QALRDFYGTTG-----AIVFSTGYMA 136 (427)
T ss_dssp EECSCCCTTCGGGCHHHHHHHHHHHHH-HCSCCCSCTTTTCCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHH
T ss_pred EEEECcccccCCCCHHHHHHHHHHHHH-hCCCCcccccccCCcHHHHHHH----HHHHHHhCCCc-----eEEecCcHHH
Confidence 34544432 2478999999887754 33456666655554 4444444 67888889863 4678899999
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC---CCcEEE
Q 012104 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---RPKLII 186 (471)
Q Consensus 110 ~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~---~pklIi 186 (471)
|..++.++++|||.|++..+.|+++.. .+...|. +++.++ .+|+++|++++.+. ++++|+
T Consensus 137 ~~~al~~l~~~gd~vl~~~~~h~~~~~---------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 137 NLGIISTLAGKGEYVILDADSHASIYD---------GCQQGNA--EIVRFR------HNSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp HHHHHHHHSCTTCEEEEETTCCHHHHH---------HHHHSCS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEEE
T ss_pred HHHHHHHhcCCCCEEEECCcccHHHHH---------HHHHcCC--eeEEeC------CCCHHHHHHHHHhccCCCCeEEE
Confidence 999999999999999999988875531 1223343 444442 47999999999764 678887
Q ss_pred Ec--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhcc-ccC-C--CCC-CCccEEEeCCCCcCCCCCeEEEEeeCC
Q 012104 187 CG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAA-QEA-A--NPF-EYCHIVTTTTHKSLRGPRAGMIFYRKG 259 (471)
Q Consensus 187 ~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~-g~~-~--~p~-~~aDiv~~s~~K~l~GprgG~i~~~~~ 259 (471)
+. +|++|...|+++|+++|+++|++||+|++|..|.... |.. . ..+ +.+|++++|+||++ |++||+++++++
T Consensus 200 ~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~~ 278 (427)
T 2w8t_A 200 LEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNHP 278 (427)
T ss_dssp EESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECCT
T ss_pred EcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCHH
Confidence 54 6889999999999999999999999999998554321 110 0 112 25789999999998 578899999874
Q ss_pred CCCCCCCCCCCcccchHhhhhhcCCCC-CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEee
Q 012104 260 PKPPKKGQPEGAVYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (471)
Q Consensus 260 ~~~~~~~~~~i~~~~l~~~i~~~~~~~-~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~ 338 (471)
+.+.+.....+. ..++++...+++...+++... ..++..+++.+++++|.+.|++.|+++..
T Consensus 279 ---------------l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 341 (427)
T 2w8t_A 279 ---------------KFEAVRLACRPYIFTASLPPSVVATATTSIRKLM--TAHEKRERLWSNARALHGGLKAMGFRLGT 341 (427)
T ss_dssp ---------------TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHHHHHHTCEESC
T ss_pred ---------------HHHHHHHhcccccccCCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 333333211000 123445556666556776653 24677888899999999999888988752
Q ss_pred CCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 339 GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 339 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+..++++++.+.. +.+..++.+.|.+.||.+.++..|+.+ ...+.+||+++..+ ++++++++.+.|.++++.
T Consensus 342 ~~~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~~--~~~~~lRi~~~~~~----t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 342 ETCDSAIVAVMLED-QEQAAMMWQALLDGGLYVNMARPPATP--AGTFLLRCSICAEH----TPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp SSCCSSEEEEEESS-HHHHHHHHHHHHHTTEECEEECTTTSC--TTCEEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECC-HHHHHHHHHHHHHCCeEEeeeCCCCCC--CCCeEEEEEeCCCC----CHHHHHHHHHHHHHHHHH
Confidence 22144677887742 224566778888889999887655422 23478999986543 489999999999988765
Q ss_pred H
Q 012104 419 T 419 (471)
Q Consensus 419 ~ 419 (471)
.
T Consensus 415 ~ 415 (427)
T 2w8t_A 415 V 415 (427)
T ss_dssp H
T ss_pred h
Confidence 3
No 26
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.4e-26 Score=231.26 Aligned_cols=347 Identities=13% Similarity=0.067 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHHhccC---CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC
Q 012104 17 PEIHDLIEKEKRRQCR---GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD 93 (471)
Q Consensus 17 ~~~~~~~~~e~~~~~~---~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~ 93 (471)
.++.+.+.+-...... ...+......++|.+.+++...+.+.+. .+. . | .....++..+++++++++|++
T Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~-~-~---~~~~~~~~~l~~~la~~~~~~ 85 (397)
T 3f9t_A 13 KEILEELKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLG--DPG-L-F---KGTKLLEEKAVALLGSLLNNK 85 (397)
T ss_dssp HHHHHHHHHHHTTSCCGGGTCBCSCSCCCCCTHHHHHHHHHTTCCTT--SGG-G-B---HHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhhccCCCCCCCCeEEEecCCCcHHHHHHHHHHHhhcCC--Ccc-c-C---hhHHHHHHHHHHHHHHHhCCC
Confidence 5566666543322211 1223333344678999999887754432 111 1 1 233455556678899999998
Q ss_pred CCCCceeeecCChHHHHHHHHHHhcCC-------------CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 94 PTQWGVNVQPYSGSPANFAAYTAVLEP-------------HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 94 ~~~~~~~v~~~sGt~A~~~~~~all~p-------------GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
.+ -.+.++||++|+.+++.+++.+ ||+|++.++.|+++.. .+...|. +++.++
T Consensus 86 ~~---~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~v~ 151 (397)
T 3f9t_A 86 DA---YGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEK---------GREMMDL--EYIYAP 151 (397)
T ss_dssp TC---EEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHH---------HHHHHTC--EEEEEC
T ss_pred CC---CEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHH---------HHHHcCc--eeEEEe
Confidence 64 2356778889999999998766 9999999998876532 1223443 555666
Q ss_pred ecCCCCCCCHHHHHHHhhhCCCcEEE-Ec-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccC-------CCC
Q 012104 161 VNSSTGYIDYDKLEEKALDFRPKLII-CG-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA-------ANP 231 (471)
Q Consensus 161 v~~~~~~iD~~~le~~~~~~~pklIi-~~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~-------~~p 231 (471)
++ +++.+|++++++.+.+.++++|+ ++ +|++|...|+++|+++|+++|++|++|++|..+....... ..+
T Consensus 152 ~~-~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~ 230 (397)
T 3f9t_A 152 IK-EDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYK 230 (397)
T ss_dssp BC-TTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCC
T ss_pred eC-CCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccc
Confidence 66 45889999999999864677666 44 7889999999999999999999999999997443211100 012
Q ss_pred CC---CccEEEeCCCCcCCC-CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCC--------CCCCCcHHHHHHH
Q 012104 232 FE---YCHIVTTTTHKSLRG-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPS--------LQGGPHNHQIGAL 299 (471)
Q Consensus 232 ~~---~aDiv~~s~~K~l~G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~--------~~g~p~~~~iaa~ 299 (471)
+. ++|++++|+||++.+ .+.|+++++++ .+.+.+... .+. ..+++......+.
T Consensus 231 ~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 295 (397)
T 3f9t_A 231 FDFSLGVDSITIDPHKMGHCPIPSGGILFKDI--------------GYKRYLDVD-APYLTETRQATILGTRVGFGGACT 295 (397)
T ss_dssp CSGGGTCSEEECCTTTTTCCCSSCEEEEESSG--------------GGGGGTCEE-CTTSSSSEECSSCSSCCSHHHHHH
T ss_pred ccccccCCeEEEccccccCCCCCceEEEEeCH--------------HHHHhhccC-CccccCCCccccccccccchHHHH
Confidence 22 578999999999744 47788888764 233333211 111 1123332234444
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCC
Q 012104 300 AVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD 379 (471)
Q Consensus 300 a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~ 379 (471)
.+++..+...++++..++..++++++.+.|++.|+.++.. ...+++++++. +..++.+.|.+.||.+.++..
T Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~~~--- 367 (397)
T 3f9t_A 296 YAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE-PILNIVAIEDE----DYKEVCKKLRDRGIYVSVCNC--- 367 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-CSSSEEEEECT----THHHHHHHHHHTTCBCEECSS---
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC-CCccEEEEEeC----CHHHHHHHHHhCCeEEeccCC---
Confidence 4555554455678888899999999999999988886544 34556677654 267788888888999877532
Q ss_pred CCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 380 SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 380 ~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
++++||+++..+ ++++++++.+.|.++++
T Consensus 368 -----~~~~Ri~~~~~~----~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 368 -----VKALRIVVMPHI----KREHIDNFIEILNSIKR 396 (397)
T ss_dssp -----SSEEEEECCTTC----CHHHHHHHHHHHHHHC-
T ss_pred -----CCEEEEEEcCCC----CHHHHHHHHHHHHHhhC
Confidence 379999986443 48999999999988764
No 27
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.96 E-value=6e-27 Score=232.84 Aligned_cols=321 Identities=12% Similarity=0.020 Sum_probs=232.9
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
+..|+|..++|. .+|.|++++...+.+. .+||. ....+ .++.+++++|++.+ ..+.++||++
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~----l~~~la~~~~~~~~---~i~~~~g~~~ 79 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVKA--NRYAK-------NEILM----LGNKLAAHHQVEAP---SILLTAGSSE 79 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGGT--TSCCH-------HHHHH----HHHHHHHHTTSCGG---GEEEESHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhhC--cCCCC-------CchHH----HHHHHHHHhCCChH---HEEEeCChHH
Confidence 356888888765 4789999998877532 23321 22223 34778889998654 2344556678
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh-CCCcEEEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD-FRPKLIIC 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~-~~pklIi~ 187 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++ +++.+|++++++.+.+ .++++|++
T Consensus 80 a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~~v~l 147 (354)
T 3ly1_A 80 GIRAAIEAYASLEAQLVIPELTYGDGEH---------FAKIAG--MKVTKVKML-DNWAFDIEGLKAAVAAYSGPSIVYL 147 (354)
T ss_dssp HHHHHHHHHCCTTCEEEEESSSCTHHHH---------HHHHTT--CEEEEECCC-TTSCCCHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHHHhCCCCeEEECCCCchHHHH---------HHHHcC--CEEEEecCC-CCCCCCHHHHHHHhccCCCCCEEEE
Confidence 9999999999999999999999876532 122334 355566666 3588999999999974 47898875
Q ss_pred -c-CCCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCCC------CccEEEeCCCCcC--CCCCeEEEE
Q 012104 188 -G-GSAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE------YCHIVTTTTHKSL--RGPRAGMIF 255 (471)
Q Consensus 188 -~-~s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~~------~aDiv~~s~~K~l--~GprgG~i~ 255 (471)
+ +||+|..+|.+++.++|+. +|+++++|++|. ++...+..++++. ..+++++|+||++ +|.|.|+++
T Consensus 148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 226 (354)
T 3ly1_A 148 VNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYA-EFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAV 226 (354)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTG-GGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEE
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHH-HhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeee
Confidence 3 7889999999999988888 999999999997 5555544333332 2348999999996 677889999
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~ 335 (471)
+++ ++.+.+.....+ .+++...+++...+++.. ..+++..+++.++++++.+.|++.|+.
T Consensus 227 ~~~---------------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~ 286 (354)
T 3ly1_A 227 AHP---------------TVIALMGRYVAG---EKINFSGVDAALASMNDS--AFITYSKKSNDVSRQILLKALEDLKLP 286 (354)
T ss_dssp CCH---------------HHHHHHGGGTTC---SCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCH---------------HHHHHHHHhcCC---CCCCHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 876 566666655433 244555555555555432 356778888899999999999888887
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
+.. + ...++|+++.. +..++.+.|.++||.+. +..++ ..+++||++. +++|++++.+.|.++
T Consensus 287 ~~~-~-~~~~~~~~~~~---~~~~~~~~l~~~gi~v~-g~~~~-----~~~~iRis~~-------~~~~i~~~~~~l~~~ 348 (354)
T 3ly1_A 287 YLP-S-EGNFVFHQLVV---PLKDYQTHMADAGVLIG-RAFPP-----ADNWCRISLG-------TPQEMQWVADTMREF 348 (354)
T ss_dssp BCC-C-CSSEEEEECSS---CHHHHHHHHHHTTEECC-CCCTT-----CTTEEEEECC-------CHHHHHHHHHHHHHH
T ss_pred ECC-C-CceEEEEECCC---CHHHHHHHHHHCCEEEe-ecCCC-----CCCEEEEEcC-------CHHHHHHHHHHHHHH
Confidence 753 2 34567888754 67888888889999998 54332 3579999973 378999999999988
Q ss_pred HHH
Q 012104 416 VTL 418 (471)
Q Consensus 416 l~~ 418 (471)
++.
T Consensus 349 l~~ 351 (354)
T 3ly1_A 349 RKK 351 (354)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 28
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=3.4e-27 Score=238.12 Aligned_cols=334 Identities=13% Similarity=-0.006 Sum_probs=229.4
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+.+.+++..++++|++++.+.+.+.|. ...+......++.+++++|++.+. ..+.++||++|+.
T Consensus 18 ~~~~~~~~p~~~~~~v~~a~~~~~~~~~~------------~~~~~~~~~l~~~la~~~~~~~~~--~v~~~~g~t~al~ 83 (396)
T 2ch1_A 18 EKIMMGPGPSNCSKRVLTAMTNTVLSNFH------------AELFRTMDEVKDGLRYIFQTENRA--TMCVSGSAHAGME 83 (396)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCCCTTC------------HHHHHHHHHHHHHHHHHHTCCCSC--EEEESSCHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhccccccCCC------------hhHHHHHHHHHHHHHHHhCCCCCc--EEEECCcHHHHHH
Confidence 34566666677899999998765432221 122222233567889999987631 1345677889999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++|||+|++.++.|.++.... .+...|. +++.++++ .++.+|++++++.+.+.++++|++. +
T Consensus 84 ~~~~~~~~~gd~vl~~~~~~~~~~~~~-------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~~~ 153 (396)
T 2ch1_A 84 AMLSNLLEEGDRVLIAVNGIWAERAVE-------MSERYGA--DVRTIEGP-PDRPFSLETLARAIELHQPKCLFLTHGD 153 (396)
T ss_dssp HHHHHHCCTTCEEEEEESSHHHHHHHH-------HHHHTTC--EEEEEECC-TTSCCCHHHHHHHHHHHCCSEEEEESEE
T ss_pred HHHHHhcCCCCeEEEEcCCcccHHHHH-------HHHHcCC--ceEEecCC-CCCCCCHHHHHHHHHhCCCCEEEEECCC
Confidence 999999999999999998887642100 1123343 45555555 4578999999999975478888754 6
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKG 266 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~ 266 (471)
||+|...|+++|.++|+++|++||+|++|..|. .+.++. ++|++++|+||++.||.| |++++++.
T Consensus 154 nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~-----~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~------- 221 (396)
T 2ch1_A 154 SSSGLLQPLEGVGQICHQHDCLLIVDAVASLCG-----VPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPK------- 221 (396)
T ss_dssp TTTTEECCCTTHHHHHHHTTCEEEEECTTTBTT-----BCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHH-------
T ss_pred CCCceecCHHHHHHHHHHcCCEEEEEccccccC-----CccchhhcCcCEEEEcCCccccCCCCeEEEEECHH-------
Confidence 889999999999999999999999999997542 222333 479999999999877655 88888763
Q ss_pred CCCCcccchHhhhhhc-----------------C-----CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 012104 267 QPEGAVYDFEDKINFA-----------------V-----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~~-----------------~-----~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~ 324 (471)
+.+.+... . .....++++...++++..+++.....++++..+++.+++++
T Consensus 222 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 293 (396)
T 2ch1_A 222 --------ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQI 293 (396)
T ss_dssp --------HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred --------HHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22222110 0 01123456666666666677765444577888889999999
Q ss_pred HHHHHHcCCceEeeCCC---CCeeEEEEccCCCCCHHHHHHHHhh-cCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCC
Q 012104 325 LGNYLTGKGYSLVTGGT---ENHLVLWDLRPLGLTGNKVEKLCDL-CNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 325 l~~~L~~~g~~i~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~ 400 (471)
+.+.|++.|++++.+.. ..+++++.+. .+++..++.+.|.+ +||.+.++..+. ..+++||++...+ .
T Consensus 294 l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~~gi~v~~g~~~~-----~~~~iRi~~~~~~---~ 364 (396)
T 2ch1_A 294 LYEGLGKMGLDIFVKDPRHRLPTVTGIMIP-KGVDWWKVSQYAMNNFSLEVQGGLGPT-----FGKAWRVGIMGEC---S 364 (396)
T ss_dssp HHHHHHHHTCCBSSCSGGGBCTTEEEEECC-TTCCHHHHHHHHHHHHCBCCBCCCGGG-----TTTEEEEECCGGG---C
T ss_pred HHHHHHHCCCeeccCCccccCCceEEEEcC-CCCCHHHHHHHHHHhCCEEEecCcccc-----CCCEEEEECCCCc---C
Confidence 99999888888754321 1235677764 36678888777754 599998764321 3478999973221 2
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~~ 418 (471)
++++++++.+.|.++++.
T Consensus 365 ~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 365 TVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 478999999999988764
No 29
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.96 E-value=8.5e-27 Score=235.58 Aligned_cols=343 Identities=14% Similarity=0.103 Sum_probs=234.2
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHhcCC-CCCCCceeeecCChHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNR-YYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r-~~~g~~~~~~lE~~~~~~~~~lfg~-~~~~~~~~v~~~sGt~A 109 (471)
.+.|..+. ...++.|++++...+.+.+ +.++.. +..+.......+ ..++.+++++|. +.+ ..+.++||++|
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~la~~~~~~~~~---~v~~~~g~t~a 97 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKME-NVRKRASLFINARSAE---ELVFVRGTTEG 97 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHH-HHHHHHHHHTTCSCGG---GEEEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHHHHHHH-HHHHHHHHHcCCCCCC---eEEEeCChhHH
Confidence 46665444 4568999999988876543 223210 111111222333 356789999998 332 23556777899
Q ss_pred HHHHHHHh----cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEE
Q 012104 110 NFAAYTAV----LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 110 ~~~~~~al----l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklI 185 (471)
+.+++.++ ++|||+|++.++.|.+... .+. ..+...| .+++.++++ +++.+|++++++.+.+ ++++|
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~-~~~----~~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~l~~-~~~~v 168 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIV-PWQ----MLCARVG--AELRVIPLN-PDGTLQLETLPTLFDE-KTRLL 168 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTH-HHH----HHHHHHT--CEEEEECBC-TTSCBCGGGHHHHCCT-TEEEE
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHH-HHH----HHHHhCC--CEEEEEecC-CCCCcCHHHHHHHhcc-CCeEE
Confidence 99999999 8999999999998876532 110 0011234 355556665 4578999999999864 78888
Q ss_pred EEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCC
Q 012104 186 ICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGP 260 (471)
Q Consensus 186 i~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~ 260 (471)
++. +|++|...|+++|+++|+++|++|++|++|..|. .+..+. +.|++++|+||++ ||.| |++++++
T Consensus 169 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~-----~~~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~-- 240 (406)
T 1kmj_A 169 AITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMH-----HPVDVQALDCDFYVFSGHKLY-GPTGIGILYVKE-- 240 (406)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTT-----SCCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH--
T ss_pred EEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCC-----CCCcccccCCCEEEEEchhcc-CCCCcEEEEEeH--
Confidence 754 6889999999999999999999999999997542 222222 5799999999988 7776 9999876
Q ss_pred CCCCCCCCCCcccchHhhhhhcCCC---------------------CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 012104 261 KPPKKGQPEGAVYDFEDKINFAVFP---------------------SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (471)
Q Consensus 261 ~~~~~~~~~i~~~~l~~~i~~~~~~---------------------~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~ 319 (471)
++.+++...... ...|++...+++++..+++.+...++++..++..
T Consensus 241 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~ 307 (406)
T 1kmj_A 241 -------------ALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQ 307 (406)
T ss_dssp -------------HHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -------------HHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 333333221110 1134567777777766776654445677888888
Q ss_pred HHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC--CCC-CCCeeEEecCCC
Q 012104 320 ANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS--SAL-APGGVRIGTPAM 395 (471)
Q Consensus 320 ~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~-~~~~iRig~~~~ 395 (471)
++++++.+.|++. |++++.+.....++++.+. +.+..++.+.|.+.||.+.++..+..+ ... .++.+||+++..
T Consensus 308 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~ 385 (406)
T 1kmj_A 308 NLMHYALSQLESVPDLTLYGPQNRLGVIAFNLG--KHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY 385 (406)
T ss_dssp HHHHHHHHHHTTSTTEEEESCTTCCSEEEEEET--TCCHHHHHHHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTT
T ss_pred HHHHHHHHHHhcCCCeEEecCCCcCCEEEEEEC--CCCHHHHHHHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecC
Confidence 9999999999987 8887643212445555663 457788889999999999876432100 000 147899998654
Q ss_pred CCcCCCHHHHHHHHHHHHHHHH
Q 012104 396 TSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 396 t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+ +++|++++.+.|.++++
T Consensus 386 ~----t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 386 N----THEEVDRLVTGLQRIHR 403 (406)
T ss_dssp C----CHHHHHHHHHHHHHHHH
T ss_pred C----CHHHHHHHHHHHHHHHH
Confidence 3 48999999999988765
No 30
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=1.5e-26 Score=230.97 Aligned_cols=339 Identities=15% Similarity=0.103 Sum_probs=236.4
Q ss_pred cccccccChHHHHHHHHHHHhc---cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHH
Q 012104 9 NSSLETVDPEIHDLIEKEKRRQ---CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCR 83 (471)
Q Consensus 9 ~~~~~~~d~~~~~~~~~e~~~~---~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~ 83 (471)
...+..+.+........+..++ ++.|+|..++|. ++|.|++++...+... .+||.. ....+ +
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l----r 73 (363)
T 3ffh_A 7 KKSLAGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTSKKVAAIQANSSVET--EIYPDG-------WASSL----R 73 (363)
T ss_dssp CGGGTTCCC----CHHHHHHHTTTCSCCEECSSCSCTTCCCHHHHHHHHTCBSCC--CBC-----------CHHH----H
T ss_pred hHHHHhCCCCCCCCCHHHHHHhcCCCceEEccCCCCCCCCCHHHHHHHHHHHHHh--hcCCCc-------chHHH----H
Confidence 3445555555433333333322 467899888775 4789999998765322 233321 11233 4
Q ss_pred HHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC
Q 012104 84 SRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS 163 (471)
Q Consensus 84 ~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~ 163 (471)
+.+++++|++.+ ..+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.+++++
T Consensus 74 ~~la~~~~~~~~---~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~ 139 (363)
T 3ffh_A 74 KEVADFYQLEEE---ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ---------NALIEG--AEVREIPLLQ 139 (363)
T ss_dssp HHHHHHHTCCGG---GEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHH---------HHHHHT--CEEEEEECCT
T ss_pred HHHHHHhCCChh---hEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHH---------HHHHcC--CEEEEecCCC
Confidence 678889998654 23556677889999999999999999999988865431 122334 3555666663
Q ss_pred CCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccHHHHHHHHHHh--CCEEEEeccccchhhccccCCCCCC-----C
Q 012104 164 STGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE-----Y 234 (471)
Q Consensus 164 ~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~~~i~~ia~~~--g~~livD~a~~~glv~~g~~~~p~~-----~ 234 (471)
++.+|++++++.+.+ ++++|++ + +||+|..+|.+++.++|+.+ |+++++|++|. ++.. +..+..+. .
T Consensus 140 -~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~-~~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 140 -DGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYI-EYVT-PQPEKHEKLVRTYK 215 (363)
T ss_dssp -TSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTG-GGCS-SCCCCCGGGGGTCT
T ss_pred -CCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchH-hhcC-ccccCHHHHhhcCC
Confidence 688999999999864 6888774 3 68899999999999999888 99999999998 4444 33333332 2
Q ss_pred ccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 235 CHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 235 aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
..+++.|++|++ +|.|.|++++++ ++.+.+.....+ .+++....++...+++.. .+++
T Consensus 216 ~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~l~~~~~~---~~~~~~~~~~~~~~l~~~--~~~~ 275 (363)
T 3ffh_A 216 NLIITRTFSKIYGLASARVGYGIADK---------------EIIRQLNIVRPP---FNTTSIGQKLAIEAIKDQ--AFIG 275 (363)
T ss_dssp TEEEEEESSSTTCCSSCCCEEEEECH---------------HHHHHHHHTCCS---CCCBHHHHHHHHHHHHCH--HHHH
T ss_pred CEEEEeechhhhcCchhceeeeecCH---------------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcCH--HHHH
Confidence 238899999995 677889999876 566666654332 234555555565666532 4567
Q ss_pred HHHHHHHHHHHHHHHHHHc-CCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEe
Q 012104 313 AYAKQVKANAVALGNYLTG-KGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIG 391 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~-~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig 391 (471)
+..+++.++++++.+.|++ .|++++. + .+.++|+++.. +..++.+.|.++||.+.++..++. ++.+||+
T Consensus 276 ~~~~~~~~~~~~l~~~l~~~~g~~~~~-~-~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~~~~-----~~~iRis 345 (363)
T 3ffh_A 276 ECRTSNANGIKQYEAFAKRFEKVKLYP-A-NGNFVLIDLGI---EAGTIFSYLEKNGYITRSGAALGF-----PTAVRIT 345 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEECC-C-CSSEEEEECSS---CHHHHHHHHHHTTEECEETTTTTC-----TTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceECC-C-CCeEEEEECCC---CHHHHHHHHHHCCeEEEeCccCCC-----CCeEEEE
Confidence 8888889999999999998 6998753 2 34567888753 678888888899999998765542 5799999
Q ss_pred cCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 392 TPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 392 ~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
++ +++|++++.+.|.++
T Consensus 346 ~~-------~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 346 IG-------KEEDNSAVIALLEKL 362 (363)
T ss_dssp CC-------CHHHHHHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHHHh
Confidence 73 478999999998875
No 31
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=2.9e-27 Score=236.64 Aligned_cols=338 Identities=15% Similarity=0.107 Sum_probs=230.3
Q ss_pred CCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc
Q 012104 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL 118 (471)
Q Consensus 39 s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all 118 (471)
+...++|.|++++...+.+.+ ++|+..|..+... ..+.+..++++++++|++.+ ..+.++||++|+.+++.+++
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~---~i~~~~g~~~a~~~~~~~~~ 81 (382)
T 4hvk_A 8 SAKPVDERILEAMLPYMTESF--GNPSSVHSYGFKA-REAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGYA 81 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHH-HHHHHHHHHHHHHHTTCTTE---EEEEESSHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHhhc--CCCcccchHHHHH-HHHHHHHHHHHHHHcCCCcC---eEEEECCchHHHHHHHHHhh
Confidence 345678999999998886654 4555433222222 23333456889999999763 23456677789999999987
Q ss_pred ----CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCC
Q 012104 119 ----EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAY 192 (471)
Q Consensus 119 ----~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~ 192 (471)
+|||+|++.++.|+++.... ......+.+++.++++ +++.+|+++|++.+.+ ++++|++. +|++
T Consensus 82 ~~~~~~gd~vi~~~~~~~~~~~~~--------~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4hvk_A 82 MRNARKGKHILVSAVEHMSVINPA--------KFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHHGGGCCEEEEETTCCHHHHHHH--------HHHHHTTCEEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hhhcCCCCEEEECCCCcHHHHHHH--------HHHHhcCCEEEEeccC-CCCCcCHHHHHHHhcc-CceEEEEECCCCCc
Confidence 99999999998887654210 0111123456666666 5678999999999864 78888754 7889
Q ss_pred CccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCCCCCC
Q 012104 193 PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPE 269 (471)
Q Consensus 193 g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~~~ 269 (471)
|...|+++|.++|+++|+ |++|++|+.|.. +.++. ++|++++|+||++ ||. .|+++++++..
T Consensus 152 G~~~~~~~i~~l~~~~~~-li~D~a~~~~~~-----~~~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~~-------- 216 (382)
T 4hvk_A 152 GTIQPVEEISEVLAGKAA-LHIDATASVGQI-----EVDVEKIGADMLTISSNDIY-GPKGVGALWIRKEAK-------- 216 (382)
T ss_dssp CBBCCHHHHHHHHSSSSE-EEEECTTTBTTB-----CCCHHHHTCSEEEEESGGGT-SCTTCEEEEEETTCC--------
T ss_pred eeeCCHHHHHHHHHHcCE-EEEEhHHhcCCC-----CCCchhcCCCEEEEeHHHhc-CCCceEEEEEcCccC--------
Confidence 999999999999999999 999999975532 22332 5799999999975 665 48888877421
Q ss_pred CcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCC--Ce
Q 012104 270 GAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTE--NH 344 (471)
Q Consensus 270 i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~--~~ 344 (471)
+...+... ......++++...++++..+++... .++++..++..++++++.+.|++. |+.+...... .+
T Consensus 217 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4hvk_A 217 -----LQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp -----CCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred -----cCcccccCCCcCccccCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCC
Confidence 00000000 0001134556677777777776543 467888889999999999999987 7887543211 23
Q ss_pred eEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC--C------C------CCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 345 LVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS--A------L------APGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 345 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~--~------~------~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
++++.+. +.+..++.+.|.++||.++++..+.... + . ..+.+||++...+ +++|++++.+
T Consensus 291 ~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~----t~e~i~~~~~ 364 (382)
T 4hvk_A 291 NVNVRFS--YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLE 364 (382)
T ss_dssp EEEEEET--TCCHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTC----CHHHHHHHHH
T ss_pred EEEEEEC--CCCHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCC----CHHHHHHHHH
Confidence 4555543 5678889999999999998875443211 0 0 0478999986543 4799999999
Q ss_pred HHHHHHHHH
Q 012104 411 FLHRAVTLT 419 (471)
Q Consensus 411 ~i~~~l~~~ 419 (471)
.|.++++..
T Consensus 365 ~l~~~~~~~ 373 (382)
T 4hvk_A 365 VLPGVIERL 373 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 32
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.96 E-value=3.7e-27 Score=237.28 Aligned_cols=350 Identities=14% Similarity=0.148 Sum_probs=241.9
Q ss_pred cChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC-
Q 012104 15 VDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH- 91 (471)
Q Consensus 15 ~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg- 91 (471)
....+++...++. ...+.|+|..+++. .+|.|++++...+.+.. .+|+. +. ..+++..++++++++|
T Consensus 17 ~g~~~~d~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~~---~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 17 NFSSKWSEMEKKY-GTNDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-YGYTT-----RP---DSYNESIVNWLYRRHNW 86 (391)
T ss_dssp TTBHHHHCHHHHH-SCSCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-CCCBC-----CC---HHHHHHHHHHHHHHHCC
T ss_pred CCceeeeeccccc-CCCCceeccccCCCCCCCHHHHHHHHHHHhCCC-CCCCC-----CC---HHHHHHHHHHHHHHhCC
Confidence 3455666554432 23567888877754 46899999988775422 12221 11 3444555678888898
Q ss_pred -CCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec---CCCCC
Q 012104 92 -LDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN---SSTGY 167 (471)
Q Consensus 92 -~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~---~~~~~ 167 (471)
++.+ ..+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++ ..++.
T Consensus 87 ~~~~~---~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~~~ 152 (391)
T 4dq6_A 87 KIKSE---WLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNS---------VVKNNN--RELIISPLQKLENGNYI 152 (391)
T ss_dssp CCCGG---GEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHH---------HHHHTT--CEEEECCCEECTTSCEE
T ss_pred CCcHH---HeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHH---------HHHHcC--CeEEeeeeeecCCCceE
Confidence 4443 23456677889999999999999999999999876532 122334 355555555 23456
Q ss_pred CCHHHHHHHhhhCCCcEEEE-c-CCCCCccc---cHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--Ccc----
Q 012104 168 IDYDKLEEKALDFRPKLIIC-G-GSAYPRDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCH---- 236 (471)
Q Consensus 168 iD~~~le~~~~~~~pklIi~-~-~s~~g~~~---d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aD---- 236 (471)
+|++++++.+.+ +++|++ + +||+|..+ ++++|+++|+++|+++|+|++|. ++...|..+.++. ..|
T Consensus 153 ~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~ 229 (391)
T 4dq6_A 153 MDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHS-DIILKKHKHIPMASISKEFEKN 229 (391)
T ss_dssp CCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHT
T ss_pred eeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeecccc-ccccCCCCccCHHHcCccccCc
Confidence 999999999975 887764 4 67899884 56778889999999999999997 5555554433443 122
Q ss_pred -EEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHH
Q 012104 237 -IVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKA 313 (471)
Q Consensus 237 -iv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~ 313 (471)
++++|+||++ +|.|.|+++++++ ++.+.+.........++++...+++...++... ...+++
T Consensus 230 ~i~~~s~sK~~g~~G~r~G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~ 294 (391)
T 4dq6_A 230 TITCMAPTKTFNIAGLQSSYVVLPDE--------------KDYKLLDDAFTRIDIKRNNCFSLVATEASYNNG-ESWLES 294 (391)
T ss_dssp EEEEECSHHHHTCGGGCCEEEECCSH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHH
T ss_pred EEEEEechhhccCcccceEEEEeCCH--------------HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhch-HHHHHH
Confidence 8899999995 7788899998763 455555433222223355555555665666652 334677
Q ss_pred HHHHHHHHHHHHHHHHHcC--CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEE
Q 012104 314 YAKQVKANAVALGNYLTGK--GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRI 390 (471)
Q Consensus 314 ~~~~~~~na~~l~~~L~~~--g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRi 390 (471)
..+++.++++.+.+.|++. |+.++ .+..++++|++++..+.+..++.+.|.+. ||.+.++..++.. ..+.+||
T Consensus 295 ~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi 370 (391)
T 4dq6_A 295 FLEYLESNIDFAIKYINENMPKLKVR-KPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIG---GSGYQRI 370 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSEEC-CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTT---CTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEec-CCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCC---CCCeEEE
Confidence 8888889999999999873 88875 44556677888865467888888888776 9999887655422 3579999
Q ss_pred ecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 391 GTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 391 g~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
++. + ++++++++.+.|.+++
T Consensus 371 s~~--~----~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 371 NLA--C----PRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECC--S----CHHHHHHHHHHHHHHH
T ss_pred EEc--C----CHHHHHHHHHHHHHHh
Confidence 984 2 4789999988887765
No 33
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.96 E-value=4.3e-27 Score=237.08 Aligned_cols=359 Identities=14% Similarity=0.067 Sum_probs=238.8
Q ss_pred cccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc
Q 012104 13 ETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF 90 (471)
Q Consensus 13 ~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf 90 (471)
..+.+.....+.+..++..+.|+|..+++. .++.+.+++...+.+.. .+|+. ......+++...+++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~~~~~~ 80 (389)
T 1gd9_A 8 ELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGL-THYGP------NIGLLELREAIAEKLKKQN 80 (389)
T ss_dssp HHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHH
T ss_pred HhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-CCCCC------CCCcHHHHHHHHHHHHHHh
Confidence 334444333344333333567888777653 47899999887775422 23332 1122455555556666666
Q ss_pred CCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCC
Q 012104 91 HLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYID 169 (471)
Q Consensus 91 g~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD 169 (471)
|.+.+.-...+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|
T Consensus 81 g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~d 149 (389)
T 1gd9_A 81 GIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAP---------AVILAGG--KPVEVPTYEEDEFRLN 149 (389)
T ss_dssp CCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHH---------HHHHHTC--EEEEEECCGGGTTCCC
T ss_pred CCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHCCC--EEEEeccCCccCCCCC
Confidence 8432111113556778899999999999999999999999977532 1223443 4555555532 46789
Q ss_pred HHHHHHHhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhcccc-CCCC--C---CCccEE
Q 012104 170 YDKLEEKALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQE-AANP--F---EYCHIV 238 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~-~~~p--~---~~aDiv 238 (471)
++++++.+.+ ++++|++ + +||+|..++ +++|+++|+++|++|++|++|. ++...|. .++. + ...|++
T Consensus 150 ~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~ 227 (389)
T 1gd9_A 150 VDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYE-HFIYDDARHYSIASLDGMFERTIT 227 (389)
T ss_dssp HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSTTCGGGEEE
T ss_pred HHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhh-hcccCCCCCCCHhhccCCCCCEEE
Confidence 9999999864 6887764 4 678998884 7888999999999999999998 4444333 1111 1 135799
Q ss_pred EeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccH--HHHHH
Q 012104 239 TTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP--AFKAY 314 (471)
Q Consensus 239 ~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~--~~~~~ 314 (471)
++|+||++ +|.|.|++++++ ++.+.+......... +++....++...+++.. .. ++++.
T Consensus 228 ~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~ 290 (389)
T 1gd9_A 228 VNGFSKTFAMTGWRLGFVAAPS---------------WIIERMVKFQMYNAT-CPVTFIQYAAAKALKDE-RSWKAVEEM 290 (389)
T ss_dssp EEESTTTTTCGGGCCEEEECCH---------------HHHHHHHHHHTTTTC-SCCHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred EecChhhcCCcccceEEEEECH---------------HHHHHHHHHHhhhcc-CCCHHHHHHHHHHHhCC-CcchHHHHH
Confidence 99999996 567789999886 566655543322222 33344444444455432 22 45677
Q ss_pred HHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecC
Q 012104 315 AKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTP 393 (471)
Q Consensus 315 ~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~ 393 (471)
.+++.++++.+.+.|++.|+++.. +..++++|+++...+.+..++.+.|. ++||.+.++..++. ...+++||++.
T Consensus 291 ~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRi~~~ 366 (389)
T 1gd9_A 291 RKEYDRRRKLVWKRLNEMGLPTVK-PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---AGEGYVRISYA 366 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG---GGTTBEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCeecC-CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCeEEEEec
Confidence 788888999999999988888753 44466677777543567788877775 89999988765542 12478999974
Q ss_pred CCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 394 AMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 394 ~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
. ++++++++.+.|.++++.
T Consensus 367 ~------~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 367 T------AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp S------CHHHHHHHHHHHHHHHHH
T ss_pred C------CHHHHHHHHHHHHHHHHh
Confidence 2 478999999998887754
No 34
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=8.8e-27 Score=232.89 Aligned_cols=323 Identities=12% Similarity=0.074 Sum_probs=228.9
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC-CCCCCceeeecCChH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGS 107 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~-~~~~~~~~v~~~sGt 107 (471)
++.|+|..++|. .+|.|++++...+.+....+|+.. ...++ ++.+++++|+ +.+ ..+.++||+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-------~~~~l----~~~la~~~g~~~~~---~i~~~~g~t 95 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVP-------SSEAL----RAKLKEVMQVPAGM---EVLLGNGSD 95 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCC-------CHHHH----HHHHHHHHTCCTTC---EEEEEEHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-------cHHHH----HHHHHHHhCCCCcc---eEEEcCCHH
Confidence 456889888875 478999999887764222244331 12333 4677888998 432 234455667
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.+++++ ++.+|++++++.+.++++++|++
T Consensus 96 ~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~v~~ 163 (367)
T 3euc_A 96 EIISMLALAAARPGAKVMAPVPGFVMYAM---------SAQFAG--LEFVGVPLRA-DFTLDRGAMLAAMAEHQPAIVYL 163 (367)
T ss_dssp HHHHHHHHHTCCTTCEEEEEESCSCCSCH---------HHHTTT--CEEEEEECCT-TSCCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEcCCCHHHHHH---------HHHHcC--CeEEEecCCC-CCCCCHHHHHHHhhccCCCEEEE
Confidence 89999999999999999999999877542 122334 4556666663 67899999999998668998875
Q ss_pred -c-CCCCCcccc---HHHHHHHHHHh--CCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCc-CCCCCeEEEEee
Q 012104 188 -G-GSAYPRDWD---YARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKS-LRGPRAGMIFYR 257 (471)
Q Consensus 188 -~-~s~~g~~~d---~~~i~~ia~~~--g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~-l~GprgG~i~~~ 257 (471)
+ +||+|..++ +++|+++|+++ |+++++|++|. ++...+..+ .+. ..+++++|+||+ ++|.|.|+++++
T Consensus 164 ~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~-~~~~~~~~~-~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~ 241 (367)
T 3euc_A 164 AYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQ-PFAQESWMS-RLTDFGNLLVMRTVSKLGLAGIRLGYVAGD 241 (367)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTC-CSSSCCSGG-GGGTCTTEEEEEECCCTTSCSCCEEEEEEC
T ss_pred cCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcch-hhcccchHH-HHhhCCCEEEEecchhhcccccCceeeeeC
Confidence 4 678998875 55666778999 99999999997 443222211 122 344889999998 677888999987
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceE
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSL 336 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i 336 (471)
+ ++.+.+.....++ +++...+++...+++. ..++++..+++.++++++.+.|++. |+.+
T Consensus 242 ~---------------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~ 301 (367)
T 3euc_A 242 P---------------QWLEQLDKVRPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTV 301 (367)
T ss_dssp H---------------HHHHHHGGGCCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEE
T ss_pred H---------------HHHHHHHHhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 6 5666665543322 3444555555556654 3356788888999999999999988 8886
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. + ....++|+++. +..++.+.|.++||.+.++..++ +...+++||++. +++|++++.+.|.+++
T Consensus 302 ~-~-~~~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~~~~---~~~~~~iRis~~-------~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 302 F-P-SAANFLLARVP----DAAQTFDRLLARKVLIKNVSKMH---PLLANCLRVTVS-------TPEENAQFLEAFAASL 365 (367)
T ss_dssp C-C-CSSSEEEEECS----CHHHHHHHHHTTTEECEECGGGC---GGGTTEEEEECC-------CHHHHHHHHHHHHHHT
T ss_pred C-C-CCCeEEEEECC----CHHHHHHHHHHCCeEEEECCccC---CCCCCEEEEecC-------CHHHHHHHHHHHHHHh
Confidence 4 3 33456778775 67888888999999998765443 123579999973 4799999999998875
Q ss_pred H
Q 012104 417 T 417 (471)
Q Consensus 417 ~ 417 (471)
+
T Consensus 366 ~ 366 (367)
T 3euc_A 366 Q 366 (367)
T ss_dssp C
T ss_pred c
Confidence 3
No 35
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=2.9e-27 Score=236.18 Aligned_cols=319 Identities=13% Similarity=0.070 Sum_probs=231.7
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
++.|+|..++|. .+|.|++++...+... .+|+... . .++ ++.+++++|++.+ ..+.++||++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~------~-~~l----r~~la~~~~~~~~---~v~~~~g~~~ 93 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKA--HLYPDDS------M-IEL----KSTLAQKYKVQNE---NIIIGAGSDQ 93 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGT--TSCCCTT------C-HHH----HHHHHHHHTCCGG---GEEEESSHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhh--ccCCCCC------h-HHH----HHHHHHHhCCCcc---eEEECCCHHH
Confidence 567999888776 4789999998877532 2444321 1 233 3667888998654 2345667788
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE-
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC- 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~- 187 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++.+++ +|++++++.+. .++++|++
T Consensus 94 a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~~~~-~d~~~l~~~l~-~~~~~v~~~ 160 (365)
T 3get_A 94 VIEFAIHSKLNSKNAFLQAGVTFAMYEI---------YAKQCG--AKCYKTQSITHNL-DEFKKLYETHK-DEIKLIFLC 160 (365)
T ss_dssp HHHHHHHHHCCTTCEEEECSSCCTHHHH---------HHHHHT--CEEEECSSSSCCH-HHHHHHHHHTT-TTEEEEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCChHHHHH---------HHHHcC--CEEEEEecCCCCC-CCHHHHHHHhC-CCCCEEEEc
Confidence 9999999999999999999998876532 122334 3555555533567 99999999987 57888875
Q ss_pred c-CCCCCccccHHHHHHHHH--HhCCEEEEeccccchhhc--cc-cCCCCCC-----CccEEEeCCCCc--CCCCCeEEE
Q 012104 188 G-GSAYPRDWDYARFRAVAD--KCGALLLCDMAHISGLVA--AQ-EAANPFE-----YCHIVTTTTHKS--LRGPRAGMI 254 (471)
Q Consensus 188 ~-~s~~g~~~d~~~i~~ia~--~~g~~livD~a~~~glv~--~g-~~~~p~~-----~aDiv~~s~~K~--l~GprgG~i 254 (471)
+ +||+|..+|.+++.++|+ ++|+++++|++|. ++.+ .+ ...+.+. ..+++++|+||+ ++|.|.|++
T Consensus 161 ~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 239 (365)
T 3get_A 161 LPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYN-EFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYG 239 (365)
T ss_dssp SSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTH-HHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEE
T ss_pred CCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccH-HHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEE
Confidence 3 788999999999999988 6799999999997 4442 22 2222221 345899999999 478889999
Q ss_pred EeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 012104 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~ 334 (471)
++++ ++.+.+.....+. +++...++++..+++. ..++++..+++.++++++.+.|++.|+
T Consensus 240 ~~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~g~ 299 (365)
T 3get_A 240 IANA---------------NIISAFYKLRAPF---NVSNLALKAAVAAMDD--DEFTEKTLENNFSQMELYKEFAKKHNI 299 (365)
T ss_dssp EECH---------------HHHHHHHHHSCTT---CSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EcCH---------------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9966 5666666544332 3455555555556653 245678888889999999999999898
Q ss_pred eEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 335 SLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 335 ~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
++.. +. ..++|+++... +..++.+.|.++||.+.++..++ .+++||++. +++|++++.+.|.+
T Consensus 300 ~~~~-~~-~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~------~~~iRis~~-------~~~~i~~l~~~l~~ 362 (365)
T 3get_A 300 KIID-SY-TNFITYFFDEK--NSTDLSEKLLKKGIIIRNLKSYG------LNAIRITIG-------TSYENEKFFTEFDK 362 (365)
T ss_dssp EECC-CS-SSEEEEECSSS--CHHHHHHHHHTTTEECEECGGGT------CSEEEEECC-------CHHHHHHHHHHHHH
T ss_pred EECC-CC-CeEEEEECCCC--CHHHHHHHHHHCCEEEEECccCC------CCEEEEEcC-------CHHHHHHHHHHHHH
Confidence 8753 33 34578888643 77888888888999998876554 479999973 47899999999987
Q ss_pred HH
Q 012104 415 AV 416 (471)
Q Consensus 415 ~l 416 (471)
++
T Consensus 363 ~l 364 (365)
T 3get_A 363 IL 364 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 36
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=2.9e-27 Score=237.21 Aligned_cols=336 Identities=14% Similarity=0.098 Sum_probs=230.8
Q ss_pred CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-
Q 012104 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL- 118 (471)
Q Consensus 40 ~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all- 118 (471)
...+++.|++++...+.+.+ +.++..|..+....+.++ ..++++++++|++.+ ..+.++||++|+.+++.++.
T Consensus 9 ~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~l~~ 82 (382)
T 4eb5_A 9 AKPVDERILEAMLPYMTESF--GNPSSVHSYGFKAREAVQ-EAREKVAKLVNGGGG---TVVFTSGATEANNLAIIGYAM 82 (382)
T ss_dssp CCCCCHHHHHHHHHHHHTSC--CCTTCSSHHHHHHHHHHH-HHHHHHHHHHTCTTE---EEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc--CCCCCCcHHHHHHHHHHH-HHHHHHHHHhCCCCC---eEEEcCchHHHHHHHHHHHHh
Confidence 34678999999988876543 445443432322223333 456889999998753 23556778899999999998
Q ss_pred ---CCCCEEEEeCCCCCCcccccccccCCcccee-ccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCC
Q 012104 119 ---EPHDRIMGLDLPSGGHLTHGYYTSGGKKISA-TSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAY 192 (471)
Q Consensus 119 ---~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~-~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~ 192 (471)
+|||+|++.++.|.++... +.. ...+.+++.++++ +++.+|+++|++.+.. ++++|++. +||+
T Consensus 83 ~~~~~gd~Vl~~~~~~~~~~~~---------~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~npt 151 (382)
T 4eb5_A 83 RNARKGKHILVSAVEHMSVINP---------AKFLQKQGFEVEYIPVG-KYGEVDVSFIDQKLRD-DTILVSVQHANNEI 151 (382)
T ss_dssp HHGGGCCEEEEETTCCHHHHHH---------HHHHTTTTCEEEEECBC-TTSCBCHHHHHHHCCT-TEEEEECCSBCTTT
T ss_pred hccCCCCEEEECCCcchHHHHH---------HHHHHhCCcEEEEeccC-CCCccCHHHHHHHhcC-CCeEEEEeccCCCc
Confidence 8999999999988655321 111 1123456666666 4678999999999864 68888754 7889
Q ss_pred CccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCC
Q 012104 193 PRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPE 269 (471)
Q Consensus 193 g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~ 269 (471)
|...|+++|.++|+++|++ ++|++|+.|. .+.++. ++|++++|+||+ .||.| |+++++++.
T Consensus 152 G~~~~l~~i~~l~~~~~~~-i~D~a~~~g~-----~~~~~~~~~~di~~~s~sK~-~g~~g~G~~~~~~~~--------- 215 (382)
T 4eb5_A 152 GTIQPVEEISEVLAGKAAL-HIDATASVGQ-----IEVDVEKIGADMLTISSNDI-YGPKGVGALWIRKEA--------- 215 (382)
T ss_dssp CBBCCHHHHHHHHTTSSEE-EEECTTTBTT-----BCCCHHHHTCSEEEEETGGG-TCCSSCEEEEEETTC---------
T ss_pred cccCCHHHHHHHHHHCCCE-EEEcchhcCC-----cccCccccCCCEEEeehHHh-cCCCceEEEEEcccc---------
Confidence 9999999999999999999 9999997542 222232 579999999997 57764 888888752
Q ss_pred CcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCC--CCe
Q 012104 270 GAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGT--ENH 344 (471)
Q Consensus 270 i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~--~~~ 344 (471)
.+...+... ......++++...++++..+++... .++++..+++.++++++.+.|++. |+++..+.. ..+
T Consensus 216 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 290 (382)
T 4eb5_A 216 ----KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPN 290 (382)
T ss_dssp ----CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTT
T ss_pred ----ccCceecCCCccccccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCC
Confidence 011000000 0001124566666667666776654 367788888999999999999887 887753221 134
Q ss_pred eEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC--------------CCCCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 345 LVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS--------------ALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 345 ~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~--------------~~~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
++++.+. +.+..++.+.|.+.||.+.++..+.... ....+.+||++...+ ++++++++.+
T Consensus 291 ~~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~ 364 (382)
T 4eb5_A 291 NVNVRFS--YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYN----TDEDVDRLLE 364 (382)
T ss_dssp EEEEEET--TSCHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTC----CHHHHHHHHH
T ss_pred EEEEEeC--CcCHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCC----CHHHHHHHHH
Confidence 5666664 4678888888889999998875322100 012468999985443 4899999999
Q ss_pred HHHHHHHHH
Q 012104 411 FLHRAVTLT 419 (471)
Q Consensus 411 ~i~~~l~~~ 419 (471)
.|.++++..
T Consensus 365 ~l~~~~~~~ 373 (382)
T 4eb5_A 365 VLPGVIERL 373 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 37
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=1.6e-27 Score=241.11 Aligned_cols=333 Identities=18% Similarity=0.166 Sum_probs=230.6
Q ss_pred CeeEecCCCC---CcHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 33 GIELIASENF---TSFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 33 ~i~li~s~n~---~s~~v~~a~~~~l~~~~~~g~~~~r~~~g-~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
.|++..+..+ .+|.+++++...+.. |..++.+.+|..| .....++ ++.+++++|++. .+.++||++
T Consensus 47 ~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~~-----~i~~~sGs~ 116 (401)
T 1fc4_A 47 VINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMASVRFICGTQDSHKEL----EQKLAAFLGMED-----AILYSSCFD 116 (401)
T ss_dssp EEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCSCHHHHCCBHHHHHH----HHHHHHHHTCSE-----EEEESCHHH
T ss_pred EEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCCCCcccCCcHHHHHH----HHHHHHHhCCCc-----EEEeCChHH
Confidence 3455555322 378999999887743 4444444444322 2333333 467888999872 466789999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC-----CCc
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPK 183 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~-----~pk 183 (471)
|+..++.++++|||+|++.++.|+++.. .+...| .+++.++ .+|++++++.+++. +++
T Consensus 117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g--~~~~~~~------~~d~~~l~~~l~~~~~~~~~~~ 179 (401)
T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIID---------GVRLCK--AKRYRYA------NNDMQELEARLKEAREAGARHV 179 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHH---------HHHTSC--SEEEEEC------TTCHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHcCCCCEEEEcchhHHHHHH---------HHHHcC--CceEEEC------CCCHHHHHHHHHHhhccCCCce
Confidence 9999999999999999999988865431 122333 3444442 36899999988642 688
Q ss_pred EEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhc-cccC-C--CCC-CCccEEEeCCCCcCCCCCeEEEEe
Q 012104 184 LIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVA-AQEA-A--NPF-EYCHIVTTTTHKSLRGPRAGMIFY 256 (471)
Q Consensus 184 lIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~-~g~~-~--~p~-~~aDiv~~s~~K~l~GprgG~i~~ 256 (471)
+|++. +||+|...|+++|+++|+++|++||+|++|+.|+.. .|.. + ..+ ++.|++++|+||++.|+.||++++
T Consensus 180 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~ 259 (401)
T 1fc4_A 180 LIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAA 259 (401)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEE
T ss_pred EEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEc
Confidence 88754 689999999999999999999999999999768763 2221 1 112 257999999999996666899998
Q ss_pred eCCCCCCCCCCCCCcccchHhhhhhcCCCC-CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 012104 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (471)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~-~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~ 335 (471)
++ ++.+.+.....+. ..++++...+++...+++.... .++..+++.++++++.+.|++.|++
T Consensus 260 ~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~ 322 (401)
T 1fc4_A 260 RK---------------EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA--GSELRDRLWANARQFREQMSAAGFT 322 (401)
T ss_dssp CH---------------HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CH---------------HHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 76 5555554322111 1224455555555556665421 3567788889999999999988888
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
++ + ...+++|+++.. +.+..++.+.|.+.||.+.++..|+.+ ...+.+||+++..+ ++++++++.+.|.++
T Consensus 323 ~~-~-~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~iRi~~~~~~----~~~~i~~~~~~l~~~ 393 (401)
T 1fc4_A 323 LA-G-ADHAIIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVVP--KGQARIRTQMSAAH----TPEQITRAVEAFTRI 393 (401)
T ss_dssp BC-C-SSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSSC--TTCEEEEEECCTTC----CHHHHHHHHHHHHHH
T ss_pred cc-C-CCCCEEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCCC--CCCceEEEEeCCCC----CHHHHHHHHHHHHHH
Confidence 75 3 456677888743 234667888888889999887655421 12468999985443 489999999999888
Q ss_pred HHH
Q 012104 416 VTL 418 (471)
Q Consensus 416 l~~ 418 (471)
++.
T Consensus 394 ~~~ 396 (401)
T 1fc4_A 394 GKQ 396 (401)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 38
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=6.6e-27 Score=237.60 Aligned_cols=344 Identities=14% Similarity=0.103 Sum_probs=233.8
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHhcCC-CCCCCceeeecCChHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHL-DPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~-r~~~g~~~~~~lE~~~~~~~~~lfg~-~~~~~~~~v~~~sGt~A 109 (471)
.+.|..++ ...++.|++++...+.+.+ +.++. .+.-+......++ ..++.+++++|. +.+ ..+.++||++|
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~~-~l~~~la~~~~~~~~~---~v~~~~g~t~a 102 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYE-AVRNKVAKFINARSPR---EIVYTRNATEA 102 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHH-HHHHHHHHHTTCSCGG---GEEEESSHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHHH-HHHHHHHHHcCCCCCC---eEEEcCChHHH
Confidence 56776555 3568999999988876543 22221 1111111122333 345788999998 432 24556788899
Q ss_pred HHHHHHHh----cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEE
Q 012104 110 NFAAYTAV----LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 110 ~~~~~~al----l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklI 185 (471)
+.+++.++ ++|||+|++.++.|.++.. .+. ..+...| .+++.++++ +++.+|++++++++.+ ++++|
T Consensus 103 ~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~-~~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~l~~-~~~~v 173 (420)
T 1t3i_A 103 INLVAYSWGMNNLKAGDEIITTVMEHHSNLV-PWQ----MVAAKTG--AVLKFVQLD-EQESFDLEHFKTLLSE-KTKLV 173 (420)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTH-HHH----HHHHHHC--CEEEEECBC-TTSSBCHHHHHHHCCT-TEEEE
T ss_pred HHHHHHHhhhcccCCCCEEEECcchhHHHHH-HHH----HHHHhcC--cEEEEeccC-CCCCcCHHHHHHhhCC-CceEE
Confidence 99999999 9999999999999876421 000 0011233 355566666 5678999999999864 78888
Q ss_pred EEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCC-eEEEEeeCCC
Q 012104 186 ICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPR-AGMIFYRKGP 260 (471)
Q Consensus 186 i~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gpr-gG~i~~~~~~ 260 (471)
++. +|++|...|+++|.++|+++|++|++|++|+.|.. +..+. +.|++++|+||.+ ||. +|++++++
T Consensus 174 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~-----~~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~-- 245 (420)
T 1t3i_A 174 TVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHY-----PLDVQLIDCDWLVASGHKMC-APTGIGFLYGKE-- 245 (420)
T ss_dssp EEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS-----CCCHHHHTCSEEEEEGGGTT-SCTTCEEEEECH--
T ss_pred EEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCc-----cCchhhcCCCEEEEehhhhc-CCCceEEEEEch--
Confidence 754 67899999999999999999999999999975532 21222 5799999999965 555 48988876
Q ss_pred CCCCCCCCCCcccchHhhhhhcCCC--------------------CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 012104 261 KPPKKGQPEGAVYDFEDKINFAVFP--------------------SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (471)
Q Consensus 261 ~~~~~~~~~i~~~~l~~~i~~~~~~--------------------~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~ 320 (471)
++.+++...... ...+++...++++++.+++.+...++++..++..+
T Consensus 246 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 312 (420)
T 1t3i_A 246 -------------EILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVE 312 (420)
T ss_dssp -------------HHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -------------HHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344333322111 11245666777777666766543356788888999
Q ss_pred HHHHHHHHHHcC-CceEeeCCC----CCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC--CCCC-CCeeEEec
Q 012104 321 NAVALGNYLTGK-GYSLVTGGT----ENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS--SALA-PGGVRIGT 392 (471)
Q Consensus 321 na~~l~~~L~~~-g~~i~~~~~----~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~--~~~~-~~~iRig~ 392 (471)
+++++.+.|++. |++++.... ...++++.+. +.+..++.+.|.+.||.+.++..+..+ .... .+.+||++
T Consensus 313 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~ 390 (420)
T 1t3i_A 313 LTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA--GLHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASL 390 (420)
T ss_dssp HHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET--TBCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEEC
T ss_pred HHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC--CCCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEec
Confidence 999999999987 888864421 2445566664 356788889999999999876432110 0011 46899998
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 393 PAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 393 ~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
...+ +++|++++.+.|.++++.
T Consensus 391 ~~~~----~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 391 YFYN----TKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp CTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CHHHHHHHHHHHHHHHHH
Confidence 6433 489999999999988764
No 39
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.96 E-value=3.5e-27 Score=236.86 Aligned_cols=336 Identities=15% Similarity=0.161 Sum_probs=231.5
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC--CCCCCCceeeecCCh
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSG 106 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg--~~~~~~~~~v~~~sG 106 (471)
++.|+|..+++. .+|.|++++...+.+.. .+|+.. ...+++...+++++.+| ++.+ ..+.++||
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~--------~~~~~~~l~~~l~~~~g~~~~~~---~v~~~~g~ 91 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHPI-FGYTLP--------PENIGDIICNWTKKQYNWDIQKE---WIVFSAGI 91 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSCC-CCCCCC--------CTTHHHHHHHHHHHHHCCCCCGG---GEEEESCH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcCC-CCCCCC--------CHHHHHHHHHHHHHHhCCCCChh---hEEEcCCH
Confidence 467888777754 37899999988775432 233321 12334445577888888 4432 23556677
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC--CCCCCHHHHHHHhhhCCCcE
Q 012104 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 107 t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~--~~~iD~~~le~~~~~~~pkl 184 (471)
++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|++++++.+. .++++
T Consensus 92 ~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~ 159 (383)
T 3kax_A 92 VPALSTSIQAFTKENESVLVQPPIYPPFFE---------MVTTNNR--QLCVSPLQKQNDTYAIDFEHLEKQFQ-QGVKL 159 (383)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCHHHHH---------HHHHTTC--EEEECCCEEETTEEECCHHHHHHHHT-TTCCE
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCcHHHHH---------HHHHcCC--EEEeccceecCCcEEEcHHHHHHHhC-cCCeE
Confidence 889999999999999999999998876532 1223343 4455554422 34599999999994 57888
Q ss_pred EEE-c-CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhhccccCCCCCC-------CccEEEeCCCCcC--CCCC
Q 012104 185 IIC-G-GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSL--RGPR 250 (471)
Q Consensus 185 Ii~-~-~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-------~aDiv~~s~~K~l--~Gpr 250 (471)
|++ + +||+|..++.+ +|+++|+++|+++|+|++|. ++...|..+.++. ...+++.|+||++ +|.|
T Consensus 160 v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (383)
T 3kax_A 160 MLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHS-DIIYADHTHTPFASLSEELAARTITCMAPSKTFNIAGLQ 238 (383)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred EEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEcccc-ccccCCCCceeHhhcCccccCcEEEEEEChhhccCcchh
Confidence 764 4 67899988765 45566999999999999997 5555554333332 1238899999994 6778
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
.|+++++++ ++.+.+.........++++...+++...++... ....++..+++.++++.+.+.|+
T Consensus 239 ~G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~ 303 (383)
T 3kax_A 239 ASIIIIPNE--------------KLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTEC-NDWLNEIRFYIEDNAKFACEYIK 303 (383)
T ss_dssp CEEEECCCH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heEEEeCCH--------------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 899988543 455555443222222345555555555556542 33467778888899999999998
Q ss_pred cC--CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 331 GK--GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 331 ~~--g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
+. |++++ .+..+.++|+++...+.+..++.+.|. ++||.+.++..++.. ..+.+||++. + +++++++
T Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~iRi~~~--~----~~~~i~~ 373 (383)
T 3kax_A 304 DHIPTLSVM-KPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLG---GEEHIGINIG--C----PRSVLEE 373 (383)
T ss_dssp HHCTTCEEC-CCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTT---CTTEEEEECS--S----CHHHHHH
T ss_pred hhCCCceEe-cCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCC---CCCeEEEEEc--C----CHHHHHH
Confidence 74 88875 445566778888765678888877775 799999987655432 3579999974 2 4789999
Q ss_pred HHHHHHHHH
Q 012104 408 IGEFLHRAV 416 (471)
Q Consensus 408 l~~~i~~~l 416 (471)
+.+.|.+++
T Consensus 374 ~l~~l~~~l 382 (383)
T 3kax_A 374 ILNRLRHTF 382 (383)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887765
No 40
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.96 E-value=4e-26 Score=237.99 Aligned_cols=365 Identities=13% Similarity=0.052 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHHhccCC-eeEecC--CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC
Q 012104 17 PEIHDLIEKEKRRQCRG-IELIAS--ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD 93 (471)
Q Consensus 17 ~~~~~~~~~e~~~~~~~-i~li~s--~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~ 93 (471)
.+++..+.+++....+. +++ ++ ...++|.+.+++.+.+...+. ++ .......++|+.+++++++++|++
T Consensus 40 ~~~~~~~~~~i~l~gnp~~~l-~s~~t~~~~~~v~~~l~~~~~~~~~--~~-----~~~p~~~~le~~~~~~la~l~g~~ 111 (502)
T 3hbx_A 40 EAAYQIINDELMLDGNPRLNL-ASFVTTWMEPECDKLIMSSINKNYV--DM-----DEYPVTTELQNRCVNMIAHLFNAP 111 (502)
T ss_dssp HHHHHHHHHHGGGSCCGGGBT-TCCSCCCCCHHHHHHHHHTTTCBTT--CT-----TTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCCCcee-ccccCCCCCHHHHHHHHHHhccCCC--Ch-----hcChhHHHHHHHHHHHHHHHhCCC
Confidence 34667777666543322 222 22 345689999999887755432 11 122346788888899999999998
Q ss_pred --CCCCceeeecCChHHHHHHHHHHhcCC--------CC-----EEEEeCCCCCCcccccccccCCccceeccceeEEEe
Q 012104 94 --PTQWGVNVQPYSGSPANFAAYTAVLEP--------HD-----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLP 158 (471)
Q Consensus 94 --~~~~~~~v~~~sGt~A~~~~~~all~p--------GD-----~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~ 158 (471)
.++....+.+++|++||..++.++..+ || +|++.++.|..+. +.+...|. +++.
T Consensus 112 ~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~---------~~~~~~G~--~~~~ 180 (502)
T 3hbx_A 112 LEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE---------KFARYFEV--ELKE 180 (502)
T ss_dssp CCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH---------HHHHHTTC--EEEE
T ss_pred cccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH---------HHHHHcCc--eeEE
Confidence 332213345678899999998888655 87 8999887764432 12233454 4455
Q ss_pred eeecCCCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccHHHHHHHHHHh------CCEEEEeccccchhh--ccccC
Q 012104 159 YKVNSSTGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDYARFRAVADKC------GALLLCDMAHISGLV--AAQEA 228 (471)
Q Consensus 159 ~~v~~~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~~~i~~ia~~~------g~~livD~a~~~glv--~~g~~ 228 (471)
++++++++.+|+++|++.+.+ +|++|++ . .|++|...|+++|.++|+++ |+++++|+||+.+.. ..+..
T Consensus 181 v~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~ 259 (502)
T 3hbx_A 181 VKLSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL 259 (502)
T ss_dssp ECCBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTC
T ss_pred EecCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccc
Confidence 566655589999999999874 6887763 3 77899999999999999999 999999999973321 12222
Q ss_pred CCCC--CCccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCCCCCCCcccchHhhhh--hcCC------CCCCCCCcHHHHH
Q 012104 229 ANPF--EYCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKIN--FAVF------PSLQGGPHNHQIG 297 (471)
Q Consensus 229 ~~p~--~~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~--~~~~------~~~~g~p~~~~ia 297 (471)
+..+ .++|++++|+||++.+|. .|+++++++. .+.+.+. .... ....++.....++
T Consensus 260 ~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~-------------~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~ 326 (502)
T 3hbx_A 260 EWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKE-------------DLPEELIFHINYLGADQPTFTLNFSKGSSQVI 326 (502)
T ss_dssp CCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGG-------------GSCGGGCEEECSSSSCEEECCSCCSCBSHHHH
T ss_pred ccccCCCCceEEEECcccccCCCCCeEEEEEeCHH-------------HhhHHhccCcccccCCCCCccccCCchHHHHH
Confidence 2222 379999999999986664 4888876531 1111110 0000 1122344444556
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC-ceEeeCCCCCeeEEEEccC-CCCCHHHHHHHHhhcCeEeccCC
Q 012104 298 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG-YSLVTGGTENHLVLWDLRP-LGLTGNKVEKLCDLCNITVNKNA 375 (471)
Q Consensus 298 a~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g-~~i~~~~~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~ 375 (471)
++..++..+...++.++.++..+++++|++.|++.| ++++..+...+++.+.+.. .+++..++.+.|.+.||.+....
T Consensus 327 a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~ 406 (502)
T 3hbx_A 327 AQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYT 406 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeecc
Confidence 666677766566788899999999999999999985 9886542345677777654 24677789999999999986544
Q ss_pred cCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Q 012104 376 VFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL 420 (471)
Q Consensus 376 ~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~ 420 (471)
.|.. ......+||++... .+++|++++.+.|.+++....
T Consensus 407 ~p~~--~~~~~~lRisv~~~----~t~edid~li~~L~~~l~~l~ 445 (502)
T 3hbx_A 407 MPPN--AQHITVLRVVIRED----FSRTLAERLVIDIEKVMRELD 445 (502)
T ss_dssp CCTT--CTTCEEEEEECCTT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcc--cCCceEEEEEeCCC----CCHHHHHHHHHHHHHHHHHHH
Confidence 4432 12346899998544 358999999999999886543
No 41
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.96 E-value=1.1e-26 Score=234.09 Aligned_cols=335 Identities=17% Similarity=0.084 Sum_probs=223.9
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
.+.|+|..+++. .++.+.+++...+.... .+|+.. .....+++...+++.+.+|.+.+.- -.+.+++|++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~g~~~ 102 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-TKYAPP------AGIPELREALAEKFRRENGLSVTPE-ETIVTVGGSQ 102 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCCT------TCCHHHHHHHHHHHHHTTCCCCCGG-GEEEESHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-CCCCCC------CCCHHHHHHHHHHHHHHhCCCCChH-HEEEcCChHH
Confidence 467888777753 36888998877764422 233321 1123444444566666667532211 1344556678
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.+++++ +++.+|++++++.+.. ++++|++
T Consensus 103 al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 170 (385)
T 1b5p_A 103 ALFNLFQAILDPGDEVIVLSPYWVSYPE---------MVRFAG--GVVVEVETLPEEGFVPDPERVRRAITP-RTKALVV 170 (385)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTT--CEEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcC--CEEEEeecCcccCCCCCHHHHHHhcCC-CCEEEEE
Confidence 9999999999999999999999876532 122334 3555666654 3568999999998864 6887764
Q ss_pred -c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC----CccEEEeCCCCcC--CCCCeEEEEe
Q 012104 188 -G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----YCHIVTTTTHKSL--RGPRAGMIFY 256 (471)
Q Consensus 188 -~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~----~aDiv~~s~~K~l--~GprgG~i~~ 256 (471)
+ +||+|..++ +++|.++|+++|++||+|++|. .+.+.+. +.++. ..+++++|+||++ +|.|.|++++
T Consensus 171 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~-~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~ 248 (385)
T 1b5p_A 171 NSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYE-HLLYEGE-HFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACG 248 (385)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBSSSC-CCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEEC
T ss_pred eCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCC-CCCHHHcCCCCEEEEEechhhcCCcccceEEEEe
Confidence 4 788999877 7788899999999999999997 5554442 11221 2368899999995 6888999998
Q ss_pred eCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012104 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ---ASTPAFKAYAKQVKANAVALGNYLTGKG 333 (471)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~---~~~~~~~~~~~~~~~na~~l~~~L~~~g 333 (471)
++ ++.+.+......+..+.+ .....+...+++. . ..++++..+++.++.+.+.+.|++.|
T Consensus 249 ~~---------------~~~~~l~~~~~~~~~~~~-~~~~~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g 311 (385)
T 1b5p_A 249 PK---------------EVIKAMASVSRQSTTSPD-TIAQWATLEALTNQEAS-RAFVEMAREAYRRRRDLLLEGLTALG 311 (385)
T ss_dssp CH---------------HHHHHHHHHHHTTTCSCC-HHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CH---------------HHHHHHHHHHhhccCCCC-HHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 76 455555443222222333 3333333345543 2 23456777888888899999998878
Q ss_pred ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHH
Q 012104 334 YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 413 (471)
Q Consensus 334 ~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~ 413 (471)
+++. .+..++++|+++...+.+..++.+.|.++||.+.++..++. ++++||++. .+++++++..+.|.
T Consensus 312 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-----~~~iRis~~------~~~~~i~~~l~~l~ 379 (385)
T 1b5p_A 312 LKAV-RPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-----FGHVRLSYA------TSEENLRKALERFA 379 (385)
T ss_dssp CCBC-CCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-----TTEEEEECC------SCHHHHHHHHHHGG
T ss_pred Ceec-CCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-----CCeEEEEec------CCHHHHHHHHHHHH
Confidence 8774 34556677888864466788887778799999988765542 478999973 24677777776665
Q ss_pred HHH
Q 012104 414 RAV 416 (471)
Q Consensus 414 ~~l 416 (471)
+++
T Consensus 380 ~~l 382 (385)
T 1b5p_A 380 RVL 382 (385)
T ss_dssp GGC
T ss_pred HHH
Confidence 544
No 42
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.95 E-value=6.1e-27 Score=238.52 Aligned_cols=369 Identities=10% Similarity=0.055 Sum_probs=246.5
Q ss_pred cccccccccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccC-CCCCCCCCCCCcchhHHHHHHH
Q 012104 5 NEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKY-SEGMPGNRYYGGNEFIDEIENL 81 (471)
Q Consensus 5 ~~~~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~-~~g~~~~r~~~g~~~~~~lE~~ 81 (471)
...+.+.+..+++..+..+.+. ....+.|+|..+++. .++.|++++...+.... ..+|+.. .....+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~ 75 (422)
T 3fvs_A 3 KQLQARRLDGIDYNPWVEFVKL-ASEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKI 75 (422)
T ss_dssp -CCSCGGGTTCCCCHHHHHHHH-HHTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHH
T ss_pred chhHHHHhhccCccHHHHHHHH-hhcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHH
Confidence 3445667777777766555543 344578899877754 57899999988775432 1233322 112344444
Q ss_pred HHHHHHHhcCCCCCC-CceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 82 CRSRALQTFHLDPTQ-WGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~-~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
..+++.+.+|.+.+. . -.+.++||++|+.+++.++++|||+|++..|.|.++.. .+...|. +++.++
T Consensus 76 la~~~~~~~g~~~~~~~-~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~~~ 143 (422)
T 3fvs_A 76 LASFFGELLGQEIDPLR-NVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEP---------MTMMAGG--RPVFVS 143 (422)
T ss_dssp HHHHHHHHHTCCCCHHH-HEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEE
T ss_pred HHHHHHHhhCCCCCCCC-cEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHH---------HHHHcCC--EEEEEe
Confidence 456777777765321 1 13445566789999999999999999999999877532 1223343 445555
Q ss_pred ecC-----------CCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccc---cHHHHHHHHHHhCCEEEEeccccchhhc
Q 012104 161 VNS-----------STGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDW---DYARFRAVADKCGALLLCDMAHISGLVA 224 (471)
Q Consensus 161 v~~-----------~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~---d~~~i~~ia~~~g~~livD~a~~~glv~ 224 (471)
+++ .++.+|++++++.+.. ++++|++ + +||+|..+ ++++|+++|+++|++||+|++|. ++.+
T Consensus 144 ~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~ 221 (422)
T 3fvs_A 144 LKPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQ-WMVY 221 (422)
T ss_dssp CBCCCCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBC
T ss_pred cccccccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccch-hhcc
Confidence 553 2457999999998864 6887764 4 78899998 58888999999999999999997 6665
Q ss_pred cccCCCCCC------CccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHH
Q 012104 225 AQEAANPFE------YCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQI 296 (471)
Q Consensus 225 ~g~~~~p~~------~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~i 296 (471)
.|..+.++. ..++++.|+||++ +|.|.|++++++ ++.+.+......... +++....
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~ 285 (422)
T 3fvs_A 222 DGHQHISIASLPGMWERTLTIGSAGKTFSATGWKVGWVLGPD---------------HIMKHLRTVHQNSVF-HCPTQSQ 285 (422)
T ss_dssp TTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEECCH---------------HHHHHHHHHHHTTTC-CCCHHHH
T ss_pred CCCCCCChhhcccccCcEEEEecchhccCCccceEEEEEeCH---------------HHHHHHHHHHhhccC-CCCcHHH
Confidence 554333322 2348899999995 678899999877 455544432221122 2344444
Q ss_pred HHHHHHHHH------hccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCC--CC----------HH
Q 012104 297 GALAVALKQ------ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG--LT----------GN 358 (471)
Q Consensus 297 aa~a~al~~------~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~--~~----------~~ 358 (471)
++.+.++.. .....+++..+++.++++.+.+.|++.|++++. +..++++|+++...+ .+ ..
T Consensus 286 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (422)
T 3fvs_A 286 AAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII-PQGSYFLITDISDFKRKMPDLPGAVDEPYDR 364 (422)
T ss_dssp HHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSBSSEEEEECHHHHHHCCCCCCCTTCCHHH
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC-CCeeeEEEEechhhcccccccccccccccHH
Confidence 555556653 123356778888899999999999999998754 456678888874311 11 33
Q ss_pred HH-HHHHhhcCeEeccCCcCCCC--CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 359 KV-EKLCDLCNITVNKNAVFGDS--SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 359 ~~-~~~L~~~gI~v~~~~~p~~~--~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
++ ..+|+++||.+.++..++.. .+...+.+||++.. +++++++..+.|.++++
T Consensus 365 ~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 365 RFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK------DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp HHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC------CHHHHHHHHHHHHHHHh
Confidence 44 55677899999987655421 12346899999733 58999999999888764
No 43
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=8.3e-27 Score=236.89 Aligned_cols=339 Identities=14% Similarity=0.075 Sum_probs=225.7
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
+..|+|..+++. .++.+++++ ..+.+.. .+|+. ......+++...+++.+.+|.+.... -.+.++||++
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~t~ 113 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKPEV-VYYSH------SAGIWELREAFASYYKRRQRVDVKPE-NVLVTNGGSE 113 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-CCCCC------TTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEESHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHHhCCCCCHH-HEEEeCCHHH
Confidence 456788777653 468899999 7774321 23332 12234555555566666666432211 2345667789
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+ +++|++.+.+ ++++|++
T Consensus 114 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~ 180 (409)
T 2gb3_A 114 AILFSFAVIANPGDEILVLEPFYANYNA---------FAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVL 180 (409)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEE
Confidence 9999999999999999999999876532 1223443 455555553 23444 7888887764 6887764
Q ss_pred -c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---CCccEEEeCCCCcC--CCCCeEEEEee
Q 012104 188 -G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSL--RGPRAGMIFYR 257 (471)
Q Consensus 188 -~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~~aDiv~~s~~K~l--~GprgG~i~~~ 257 (471)
+ +||+|..++ +++|+++|+++|++||+|++|. ++...+...+.+ ...|++++|+||++ +|.|.|+++++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 259 (409)
T 2gb3_A 181 SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYS-EIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITR 259 (409)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECS
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECccc-ccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEEC
Confidence 3 678998764 7888999999999999999998 444433222213 24689999999996 56678999988
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceE-
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL- 336 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i- 336 (471)
++ ++.+.+......+. +++....+++..+++. ...++++..+++.++++.+.+.|++.|+++
T Consensus 260 ~~--------------~l~~~l~~~~~~~~--~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 322 (409)
T 2gb3_A 260 NE--------------ELISHAMKLAQGRL--APPLLEQIGSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRF 322 (409)
T ss_dssp CH--------------HHHHHHHHHHHHSC--CCCHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB
T ss_pred cH--------------HHHHHHHHHHhccC--CCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceee
Confidence 72 34444433222222 3344444444455643 234567778888899999999999888877
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhc------CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLC------NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~------gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
. .+..++++|+++. +.+..++.+.|.+. ||.+.++..++...+...+++||+++ .++++++++.+
T Consensus 323 ~-~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~------~~~e~i~~~~~ 393 (409)
T 2gb3_A 323 T-KPSGAFYITAELP--VEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV------LEKDLLSRAID 393 (409)
T ss_dssp C-CCSBSSEEEEECS--SSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC------SCHHHHHHHHH
T ss_pred e-CCCeeEEEEEEeC--CCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC------CCHHHHHHHHH
Confidence 4 3445667788875 55778887777655 99998875543211223579999974 34789999999
Q ss_pred HHHHHHHH
Q 012104 411 FLHRAVTL 418 (471)
Q Consensus 411 ~i~~~l~~ 418 (471)
.|.++++.
T Consensus 394 ~l~~~l~~ 401 (409)
T 2gb3_A 394 VLMEGLKM 401 (409)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 44
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.95 E-value=1.1e-26 Score=234.92 Aligned_cols=339 Identities=17% Similarity=0.165 Sum_probs=230.7
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC--CCCCCCceeeecCCh
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSG 106 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg--~~~~~~~~~v~~~sG 106 (471)
++.++|..+++. .++.|.+++...+.+.. .+|+. + ...+++...+++++.+| ++.+ ..+.+++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-----~---~~~l~~~la~~l~~~~g~~~~~~---~v~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETV-LGYTG-----P---TEEYKKTVKKWMKDRHQWDIQTD---WIINTAGV 98 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-CSSBC-----C---CHHHHHHHHHHHHHHHCCCCCGG---GEEEESSH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCC-CCCCC-----C---cHHHHHHHHHHHHHHhCCCCChh---hEEEcCCH
Confidence 356788777653 47899999988775321 22322 1 23455445566666678 4332 23445667
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC--CCCCCHHHHHHHhhhCCCcE
Q 012104 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 107 t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~--~~~iD~~~le~~~~~~~pkl 184 (471)
++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|++.+++.++++
T Consensus 99 ~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~ 167 (399)
T 1c7n_A 99 VPAVFNAVREFTKPGDGVIIITPVYYPFFM---------AIKNQER--KIIECELLEKDGYYTIDFQKLEKLSKDKNNKA 167 (399)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSSCCTHHHH---------HHHTTTC--EEEECCCEEETTEEECCHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCcHhHHH---------HHHHcCC--EEEecccccCCCCEEEcHHHHHHHhccCCCcE
Confidence 889999999999999999999999877542 1223343 4455554422 24599999999997557888
Q ss_pred EEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-------CccEEEeCCCCcC--CCCC
Q 012104 185 IIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSL--RGPR 250 (471)
Q Consensus 185 Ii~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-------~aDiv~~s~~K~l--~Gpr 250 (471)
|++ + +||+|..+| +++|+++|+++|++||+|++|. ++...|..+.++. ..+++++|+||++ +|.|
T Consensus 168 v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 246 (399)
T 1c7n_A 168 LLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHF-DLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMG 246 (399)
T ss_dssp EEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGC
T ss_pred EEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCcccHHHcCccccCcEEEEEeChhhccccchh
Confidence 774 4 678999998 8889999999999999999997 5554443222332 2348899999995 6778
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
.|+++++++ ++.+.+.....+...++++....++...++... ...+++..+++.++++.+.+.|+
T Consensus 247 ~G~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 311 (399)
T 1c7n_A 247 MSNIIIKNP--------------DIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFE 311 (399)
T ss_dssp CEEEECCCH--------------HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCH--------------HHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 899998753 455555443222222344554555555566543 33567778888899999999998
Q ss_pred c-C-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 331 G-K-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 331 ~-~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
+ . |+.++ .+..++++|+++...+.+..++.+.|. ++||.+.++..++. ..++.+||+++. .++++++
T Consensus 312 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~~------~~~~l~~ 381 (399)
T 1c7n_A 312 VNHPEIKAP-LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD---GGIGFERINLAA------PSSVIQE 381 (399)
T ss_dssp HHCTTSBCC-CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---GGTTEEEEECCS------CHHHHHH
T ss_pred hhCCCCeEe-cCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC---CCCCeEEEEecc------CHHHHHH
Confidence 7 5 88764 345566678888643467788877775 79999988765431 134789999843 2678888
Q ss_pred HHHHHHHHHHH
Q 012104 408 IGEFLHRAVTL 418 (471)
Q Consensus 408 l~~~i~~~l~~ 418 (471)
..+.|.++++.
T Consensus 382 ~l~~l~~~l~~ 392 (399)
T 1c7n_A 382 SLERLNKALKD 392 (399)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 45
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.95 E-value=1.6e-26 Score=232.25 Aligned_cols=352 Identities=14% Similarity=0.103 Sum_probs=235.9
Q ss_pred cccccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012104 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (471)
Q Consensus 9 ~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~ 86 (471)
++.+..+.+..+..+.+. .+..+.|+|..+++. .++.+.+++...+.+ ..+|+.. ....++ ++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~------~~~~~l----~~~l 70 (381)
T 1v2d_A 4 HPRTEAAKESIFPRMSGL-AQRLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQYAPP------AGLPAL----REAL 70 (381)
T ss_dssp CGGGGGC---CHHHHHHH-HHHHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCSCCCT------TCCHHH----HHHH
T ss_pred hhhhhhcCccHHHHHHHH-HhcCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcCCCCC------CCCHHH----HHHH
Confidence 344555555555555433 233567888777654 478999998877643 1223221 112233 3567
Q ss_pred HHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec--CC
Q 012104 87 LQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN--SS 164 (471)
Q Consensus 87 ~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~--~~ 164 (471)
+++++++.+. .+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++ ++
T Consensus 71 a~~~~~~~~~---v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~ 136 (381)
T 1v2d_A 71 AEEFAVEPES---VVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLP---------DAFLAGA--KARLVRLDLTPE 136 (381)
T ss_dssp HHHHTSCGGG---EEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEECEEETT
T ss_pred HHhcCCChhh---EEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCC--EEEEEeCCCCCc
Confidence 7889987542 3556778899999999999999999999999877532 1223343 45555555 45
Q ss_pred CCCCCHHHHHHHhhhCCCcEEEEc--CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC----CCc
Q 012104 165 TGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF----EYC 235 (471)
Q Consensus 165 ~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~----~~a 235 (471)
++.+|++++++.+. .++++|++. +||+|..++ +++|+++|+++|+++++|++|. ++.+ |..+.++ .+.
T Consensus 137 ~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~-g~~~~~~~~~~~~~ 213 (381)
T 1v2d_A 137 GFRLDLSALEKALT-PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYD-ELYY-GERPRRLREFAPER 213 (381)
T ss_dssp EEECCHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBS-SSCCCCHHHHCTTT
T ss_pred cCCcCHHHHHHhcC-cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcc-cccc-CCCCCCHHHhcCCC
Confidence 57899999999885 468877743 678998876 7888999999999999999997 4443 3222222 257
Q ss_pred cEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc-cHHHH
Q 012104 236 HIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS-TPAFK 312 (471)
Q Consensus 236 Div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~-~~~~~ 312 (471)
|++++|+||++ +|+|.|++++++ ++.+.+........ .+++....++...+++... ..+++
T Consensus 214 ~~~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~ 277 (381)
T 1v2d_A 214 TFTVGSAGKRLEATGYRVGWIVGPK---------------EFMPRLAGMRQWTS-FSAPTPLQAGVAEALKLARREGFYE 277 (381)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCT---------------TTHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred EEEEeechhhcCCcccceEEEEeCH---------------HHHHHHHHHHhhcc-cCCCcHHHHHHHHHHhCcccHHHHH
Confidence 89999999985 577889999976 34444432211001 1233344445555666431 23567
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEec
Q 012104 313 AYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGT 392 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 392 (471)
+..+++.+++++|.+.|++.|++++. +..++++|+++... + +.+.|.++||.+.++..++.. +...+++||++
T Consensus 278 ~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~~-~~~~~~iRi~~ 350 (381)
T 1v2d_A 278 ALREGYRRRRDLLAGGLRAMGLRVYV-PEGTYFLMAELPGW--D---AFRLVEEARVALIPASAFYLE-DPPKDLFRFAF 350 (381)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEC-CSBSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCSS-SCCTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEecC-CCcceEEEEecChH--h---HHHHHHhCCEEEecchHhCCC-CCCCCEEEEEe
Confidence 78888899999999999988998864 34456788887542 2 778889999999887655421 12357899998
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 393 PAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 393 ~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.. ++++++++.+.|.+++...
T Consensus 351 ~~------~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 351 CK------TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp CS------CHHHHHHHHHHHHHHC---
T ss_pred CC------CHHHHHHHHHHHHHHHhhc
Confidence 43 4789999999998887654
No 46
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.95 E-value=5.4e-27 Score=235.91 Aligned_cols=332 Identities=14% Similarity=0.084 Sum_probs=227.4
Q ss_pred CCeeEecCCC---CCcHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 32 RGIELIASEN---FTSFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 32 ~~i~li~s~n---~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g-~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
..|++..+++ ..++.+++++...+.+ +..+++..+|..| .+...++ ++.+++++|++. .+.++||+
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~l----~~~la~~~g~~~-----~i~~~sGt 109 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQAL----EEELAEWLGYSR-----ALLFISGF 109 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHHH----HHHHHHHHTCSE-----EEEESCHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEeCCcH
Confidence 3567766664 3578999999887754 2234444444322 2333333 467888899863 57788999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCC--CcEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR--PKLI 185 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~--pklI 185 (471)
+|+..++.++++|||.|++.++.|+++.. .+...|. +++.++ .+|++++++.+.+.+ +++|
T Consensus 110 ~a~~~~~~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g~--~~~~~~------~~d~~~l~~~l~~~~~~~~~v 172 (384)
T 1bs0_A 110 AANQAVIAAMMAKEDRIAADRLSHASLLE---------AASLSPS--QLRRFA------HNDVTHLARLLASPCPGQQMV 172 (384)
T ss_dssp HHHHHHHHHHCCTTCEEEEETTCCHHHHH---------HHHTSSS--EEEEEC------TTCHHHHHHHHHSCCSSCEEE
T ss_pred HHHHHHHHHhCCCCcEEEEcccccHHHHH---------HHHHcCC--CEEEeC------CCCHHHHHHHHHhcCCCCeEE
Confidence 99999999999999999999988775431 1223343 444443 368999999987542 5666
Q ss_pred EEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhc-cccC-CCCCC-CccEEEeCCCCcCCCCCeEEEEeeCCC
Q 012104 186 ICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVA-AQEA-ANPFE-YCHIVTTTTHKSLRGPRAGMIFYRKGP 260 (471)
Q Consensus 186 i~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~-~g~~-~~p~~-~aDiv~~s~~K~l~GprgG~i~~~~~~ 260 (471)
++. +||+|...|+++|+++|+++|++|++|++|+.|... .+.. +..+. ..|++++|+||++ ||.||++++++
T Consensus 173 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~GG~~~~~~-- 249 (384)
T 1bs0_A 173 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSS-- 249 (384)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECH--
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hccCcEEEeCH--
Confidence 643 788999999999999999999999999999766432 1111 11122 4789999999998 57889999876
Q ss_pred CCCCCCCCCCcccchHhhhhhcCCCCC-CCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeC
Q 012104 261 KPPKKGQPEGAVYDFEDKINFAVFPSL-QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTG 339 (471)
Q Consensus 261 ~~~~~~~~~i~~~~l~~~i~~~~~~~~-~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~ 339 (471)
++.+.+.....+.. .++++...+++...+++.....+.++..+++.++++++.+.|++.|+++..
T Consensus 250 -------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~- 315 (384)
T 1bs0_A 250 -------------TVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD- 315 (384)
T ss_dssp -------------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS-
T ss_pred -------------HHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC-
Confidence 45555543211111 123455555555556665533245678888899999999999988988752
Q ss_pred CCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 340 GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 340 ~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
...+++++++.. +.+..++.+.|.+.||.+.++..|+. +...+.+||+++.. .++++++++.+.|.++
T Consensus 316 -~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--~~~~~~~Ri~~~~~----~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 316 -SCSAIQPLIVGD-NSRALQLAEKLRQQGCWVTAIRPPTV--PAGTARLRLTLTAA----HEMQDIDRLLEVLHGN 383 (384)
T ss_dssp -CCSSBCCEEEES-HHHHHHHHHHHHHTTEECCEECTTSS--CTTCEEECCBCCTT----CCHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEEeCC-HHHHHHHHHHHHHCCcEEEeecCCCC--CCCCceEEEEEcCC----CCHHHHHHHHHHHHhh
Confidence 345566777642 33566788888888999988765542 12347899998543 3489999999988764
No 47
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.1e-26 Score=235.20 Aligned_cols=337 Identities=12% Similarity=0.055 Sum_probs=229.6
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
.+.|..+. ..+++.|++++...+.+.+ ++++.+|..+....+.++ ..++++++++|++.+ ..+.+++|++++.
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~~la~~~g~~~~---~v~~~~g~t~al~ 100 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVGAHPSARRSAAVLD-AAREAVADLVNADPG---GVVLGADRAVLLS 100 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCSSSHHHHHHHHHHH-HHHHHHHHHHTCCGG---GEEEESCHHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCCccHHHHHHHHHHH-HHHHHHHHHhCCCCC---eEEEeCChHHHHH
Confidence 45554443 4578999999988876543 233333321212222333 356788999998743 2344667778999
Q ss_pred HHHHHh---cCCCCEEEEeCCCCCCcccccccccCCcccee--ccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEE
Q 012104 112 AAYTAV---LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISA--TSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (471)
Q Consensus 112 ~~~~al---l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~--~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi 186 (471)
+++.++ ++|||+|++++++|+++... +.. ...+.+++.++++++++.+|+++|++.+.+ ++++|+
T Consensus 101 ~~~~~l~~~~~~gd~vi~~~~~~~~~~~~---------~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~ 170 (406)
T 3cai_A 101 LLAEASSSRAGLGYEVIVSRLDDEANIAP---------WLRAAHRYGAKVKWAEVDIETGELPTWQWESLISK-STRLVA 170 (406)
T ss_dssp HHHHHTGGGGBTTCEEEEETTSCGGGTHH---------HHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCT-TEEEEE
T ss_pred HHHHHHhhccCCCCEEEEcCCccHHHHHH---------HHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCC-CceEEE
Confidence 999888 89999999999988765321 111 002345666666656788999999999864 688877
Q ss_pred Ec--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCeE-EEEeeCCCC
Q 012104 187 CG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRAG-MIFYRKGPK 261 (471)
Q Consensus 187 ~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~GprgG-~i~~~~~~~ 261 (471)
+. +|++|...|+++|.++|+++|++|++|++|..|.. +.++. ++|++++|+||++ ||++| ++++++
T Consensus 171 ~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-----~~~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~--- 241 (406)
T 3cai_A 171 VNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYR-----LLDIRETDADVVTVNAHAWG-GPPIGAMVFRDP--- 241 (406)
T ss_dssp EESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTC-----CCCHHHHCCSEEEEEGGGGT-SCSCEEEEESCH---
T ss_pred EeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC-----CCCchhcCCCEEEeehhhhc-CCCcCeEEEEeh---
Confidence 54 68899999999999999999999999999975532 22222 5799999999976 67788 998876
Q ss_pred CCCCCCCCCcccchHhhhhhcCC--C------CCCCCCcHHHHHHHHHHHHHhccH--------------HHHHHHHHHH
Q 012104 262 PPKKGQPEGAVYDFEDKINFAVF--P------SLQGGPHNHQIGALAVALKQASTP--------------AFKAYAKQVK 319 (471)
Q Consensus 262 ~~~~~~~~i~~~~l~~~i~~~~~--~------~~~g~p~~~~iaa~a~al~~~~~~--------------~~~~~~~~~~ 319 (471)
++.+++..... . ...++++...++++..+++..... ++++..+++.
T Consensus 242 ------------~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 309 (406)
T 3cai_A 242 ------------SVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLN 309 (406)
T ss_dssp ------------HHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHH
Confidence 34433332210 0 113556777776766677654331 3577788888
Q ss_pred HHHHHHHHHHHcC-CceEeeCC-CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCC------cCCCCCCCCCCeeEEe
Q 012104 320 ANAVALGNYLTGK-GYSLVTGG-TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA------VFGDSSALAPGGVRIG 391 (471)
Q Consensus 320 ~na~~l~~~L~~~-g~~i~~~~-~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~------~p~~~~~~~~~~iRig 391 (471)
++++++.+.|++. |+++..+. ....++++.+. +.+..++.+.|.++||.+.++. .++.. ...+.+||+
T Consensus 310 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~--~~~~~iRis 385 (406)
T 3cai_A 310 RVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH--KVPADRVVQRLADNGILAIANTGSRVLDVLGVN--DVGGAVTVG 385 (406)
T ss_dssp HHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET--TBCHHHHHHHHHHTTEECEECCSCHHHHHHTTT--TTTCCEEEE
T ss_pred HHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC--CcCHHHHHHHHHHCCcEEecCChHHHHHHcCCC--CCCCeEEEE
Confidence 9999999999987 78775432 11235666654 4578888888889999998765 11110 124689999
Q ss_pred cCCCCCcCCCHHHHHHHHHHHHH
Q 012104 392 TPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 392 ~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
++..+ +++|++++.+.|.+
T Consensus 386 ~~~~~----t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 386 LAHYS----TMAEVDQLVRALAS 404 (406)
T ss_dssp CCTTC----CHHHHHHHHHHHHT
T ss_pred eecCC----CHHHHHHHHHHHHH
Confidence 86544 48999999988864
No 48
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.95 E-value=8.3e-27 Score=237.85 Aligned_cols=339 Identities=14% Similarity=0.122 Sum_probs=235.3
Q ss_pred ccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC--CCCCCceeeecCC
Q 012104 30 QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DPTQWGVNVQPYS 105 (471)
Q Consensus 30 ~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~--~~~~~~~~v~~~s 105 (471)
.++.|+|..+++. .+|.|++++...+.+.. .+|+.. . ..+++...+++++.+|. +.+ ..+.++|
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~-------~-~~l~~~l~~~l~~~~g~~~~~~---~v~~~~g 127 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHI-FGYNYF-------N-DDLYQAVIDWERKEHDYAVVKE---DILFIDG 127 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-SSCBCC-------C-HHHHHHHHHHHHHHHCCCCCGG---GEEEESC
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCC-cCCCCC-------C-HHHHHHHHHHHHHHhCCCCCHH---HEEEcCC
Confidence 3467888766643 47999999988775422 233221 1 34445556788888884 332 2344566
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec--CCCCCCCHHHHHHHhhhCCCc
Q 012104 106 GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN--SSTGYIDYDKLEEKALDFRPK 183 (471)
Q Consensus 106 Gt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~--~~~~~iD~~~le~~~~~~~pk 183 (471)
|++|+.+++.++++|||+|++..|.|.++.. .+...|. +++.++++ ..++.+|+++|++++.+.+++
T Consensus 128 ~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~ 196 (421)
T 3l8a_A 128 VVPAISIALQAFSEKGDAVLINSPVYYPFAR---------TIRLNDH--RLVENSLQIINGRFEIDFEQLEKDIIDNNVK 196 (421)
T ss_dssp HHHHHHHHHHHHSCTEEEEEEEESCCHHHHH---------HHHHTTE--EEEEEECEEETTEEECCHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCcHHHHH---------HHHHCCC--EEEeccccccCCCeeeCHHHHHHHhhccCCe
Confidence 7789999999999999999999998876532 1223343 44444443 234579999999999756788
Q ss_pred EEEE-c-CCCCCccc---cHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-------CccEEEeCCCCcC--CCC
Q 012104 184 LIIC-G-GSAYPRDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSL--RGP 249 (471)
Q Consensus 184 lIi~-~-~s~~g~~~---d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-------~aDiv~~s~~K~l--~Gp 249 (471)
+|++ + +|++|..+ ++++|+++|+++|++||+|++|. ++...|..+.++. ...+++.|+||++ +|.
T Consensus 197 ~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 275 (421)
T 3l8a_A 197 IYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQ-DLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGT 275 (421)
T ss_dssp EEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGG
T ss_pred EEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchh
Confidence 7764 4 67899884 67788899999999999999997 6666554333332 2238899999995 677
Q ss_pred CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 012104 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (471)
Q Consensus 250 rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L 329 (471)
|.|+++++++ ++.+.+.........++++...+++...++... ..++++..+++.++.++|.+.|
T Consensus 276 ~~G~~~~~~~--------------~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L 340 (421)
T 3l8a_A 276 KNSFAIIQNE--------------SLRRKFQYRQLANNQHEVPTVGMIATQAAFQYG-KPWLEELKTVIEGNIKLVIKEL 340 (421)
T ss_dssp CCEEEECCSH--------------HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred heEeEEcCCH--------------HHHHHHHHHHHhcccCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998843 555555433211223345666666666677653 3456778888889999999999
Q ss_pred HcC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 330 TGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 330 ~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
++. ++.++ .+..+++.|+++...+++..++.+.| +++||.++++..++. ...+.+||+++ + +++++++
T Consensus 341 ~~~~~i~~~-~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~--~----~~~~i~~ 410 (421)
T 3l8a_A 341 EAKTKIKVM-EPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK---EGKYFARLNVA--T----PKNTVQE 410 (421)
T ss_dssp HHHCSCEEE-CCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECC--S----CHHHHHH
T ss_pred HhCCCceEe-CCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC---CCCCEEEEEec--C----CHHHHHH
Confidence 885 88886 44567777899875556777776666 577999998765542 23579999974 2 4789999
Q ss_pred HHHHHHHHHH
Q 012104 408 IGEFLHRAVT 417 (471)
Q Consensus 408 l~~~i~~~l~ 417 (471)
..+.|.++++
T Consensus 411 ~l~~l~~~l~ 420 (421)
T 3l8a_A 411 ALSRIISVFG 420 (421)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHh
Confidence 9988887654
No 49
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.95 E-value=3.7e-26 Score=230.14 Aligned_cols=338 Identities=11% Similarity=0.003 Sum_probs=227.7
Q ss_pred ccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 30 QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 30 ~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
.++.|+|..+++. .++.+.+++...+.+.. .+|+. ......+++...+++.+.+|++.+.- ..+.++||+
T Consensus 29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~~ 100 (388)
T 1j32_A 29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGK-TRYGP------AAGEPRLREAIAQKLQRDNGLCYGAD-NILVTNGGK 100 (388)
T ss_dssp TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHhcCCCCChh-hEEEcCCHH
Confidence 3467888777753 47899999887764421 12322 12234555555567777777642211 124455567
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHHHhhhCCCcEEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDFRPKLII 186 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~~~~~~~pklIi 186 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|++.+.+ ++++|+
T Consensus 101 ~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 168 (388)
T 1j32_A 101 QSIFNLMLAMIEPGDEVIIPAPFWVSYPE---------MVKLAEG--TPVILPTTVETQFKVSPEQIRQAITP-KTKLLV 168 (388)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHHHTTC--EEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHH---------HHHHcCC--EEEEecCCcccCCCCCHHHHHHhcCc-CceEEE
Confidence 89999999999999999999999876532 1223343 4555555532 467999999999864 688776
Q ss_pred -Ec-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C----CccEEEeCCCCcC--CCCCeE
Q 012104 187 -CG-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E----YCHIVTTTTHKSL--RGPRAG 252 (471)
Q Consensus 187 -~~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~----~aDiv~~s~~K~l--~GprgG 252 (471)
++ +||+|..++ +++|+++|+++|+++++|++|. ++.+.+..+.++ . ..|++++|+||++ +|.|.|
T Consensus 169 ~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G 247 (388)
T 1j32_A 169 FNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYE-KILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVG 247 (388)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCE
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceE
Confidence 44 678998865 7888999999999999999997 555444321121 1 3579999999996 677889
Q ss_pred EEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 253 ~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
++++++ ++.+.+......+..+.+.. ..++...+++.. ..++++..+++.++++++.+.|++.
T Consensus 248 ~~~~~~---------------~~~~~l~~~~~~~~~~~~~~-~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 248 FLAGPV---------------PLVKAATKIQGHSTSNVCTF-AQYGAIAAYENS-QDCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp EEECCH---------------HHHHHHHHHHHTTTCSCCHH-HHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeCH---------------HHHHHHHHHHhhcccCCCHH-HHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999876 45555543322222233333 333333455532 4456778888899999999999987
Q ss_pred -CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 333 -GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 333 -g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
|+++.. +..++++|+++...+.+..++.+.|. ++||.+.++..++. ++++||++. .+++++++..+
T Consensus 311 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----~~~iRis~~------~~~~~i~~~~~ 378 (388)
T 1j32_A 311 PGLECPK-PDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-----DDCIRLSYA------TDLDTIKRGME 378 (388)
T ss_dssp TTCBCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-----TTBEEEECC------SCHHHHHHHHH
T ss_pred CCCcccC-CCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC-----CCcEEEEec------CCHHHHHHHHH
Confidence 887753 34556677776532467788877765 58999988755432 468999973 24788998888
Q ss_pred HHHHHHH
Q 012104 411 FLHRAVT 417 (471)
Q Consensus 411 ~i~~~l~ 417 (471)
.|.++++
T Consensus 379 ~l~~~l~ 385 (388)
T 1j32_A 379 RLEKFLH 385 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887765
No 50
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.95 E-value=3.3e-26 Score=233.10 Aligned_cols=350 Identities=15% Similarity=0.138 Sum_probs=233.4
Q ss_pred HHHhccCCeeEec-CCCCCcHHHHHHHhhhhh--ccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceee
Q 012104 26 EKRRQCRGIELIA-SENFTSFAVIEALGSALT--NKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNV 101 (471)
Q Consensus 26 e~~~~~~~i~li~-s~n~~s~~v~~a~~~~l~--~~~~~g~~~~-r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v 101 (471)
|....++.+-|.. +...++|.|++++...+. +.| ++|+. .+..+... ......+++++++++|++.+ ..+
T Consensus 16 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~~~~~---~v~ 89 (423)
T 3lvm_A 16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQA-EEAVDIARNQIADLVGADPR---EIV 89 (423)
T ss_dssp ----CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHHH-HHHHHHHHHHHHHHHTCCGG---GEE
T ss_pred cccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHHH-HHHHHHHHHHHHHHcCCCCC---eEE
Confidence 4444556666653 345678999999988876 554 34443 22222222 22333456889999998753 235
Q ss_pred ecCChHHHHHHHHHHhcC----CCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHh
Q 012104 102 QPYSGSPANFAAYTAVLE----PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKA 177 (471)
Q Consensus 102 ~~~sGt~A~~~~~~all~----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~ 177 (471)
.++||++|+.+++.++++ |||+|++.++.|+++.... ..+...| .+++.++++ +++.+|+++|++.+
T Consensus 90 ~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i 160 (423)
T 3lvm_A 90 FTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTC------RQLEREG--FEVTYLAPQ-RNGIIDLKELEAAM 160 (423)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHH------HHHHHTT--CEEEEECCC-TTSCCCHHHHHHHC
T ss_pred EeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHH------HHHHHcC--CEEEEeccC-CCCccCHHHHHHhc
Confidence 567788999999998874 8999999999887653210 0011123 455666666 46889999999998
Q ss_pred hhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCeEE
Q 012104 178 LDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRAGM 253 (471)
Q Consensus 178 ~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~GprgG~ 253 (471)
.+ ++++|++. +|++|...|+++|+++|+++|++||+|++|..|. .+..+. ++|++++|+||++.++..|+
T Consensus 161 ~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~-----~~~~~~~~~~di~~~s~sK~~g~~g~G~ 234 (423)
T 3lvm_A 161 RD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGK-----LPIDLSQLKVDLMSFSGHKIYGPKGIGA 234 (423)
T ss_dssp CT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT-----SCCCTTTSCCSEEEEESTTTTSCSSCEE
T ss_pred CC-CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCC-----CCcChhhcCCCEEEechHHhcCCCCeEE
Confidence 74 78888754 6899999999999999999999999999997543 222222 57999999999754333588
Q ss_pred EEeeCCCCCCCCCCCCCcccchHhhhhhcCC------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVF------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 254 i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
++++++.. ..+..... ....++++...++++..++..+.. ++++..++..+++++|.+
T Consensus 235 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~ 298 (423)
T 3lvm_A 235 LYVRRKPR---------------VRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLWN 298 (423)
T ss_dssp EEECBTTB---------------CCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred EEEecccc---------------CCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 88886421 11111111 112345667777777777766543 467888899999999999
Q ss_pred HHHcC-CceEeeCCCC--CeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC--------------CCCCCeeEE
Q 012104 328 YLTGK-GYSLVTGGTE--NHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS--------------ALAPGGVRI 390 (471)
Q Consensus 328 ~L~~~-g~~i~~~~~~--~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~--------------~~~~~~iRi 390 (471)
.|++. |+.++..... .+++++.+ .+.+..++.+.|.+ |.+.++..+.... ....+.+||
T Consensus 299 ~L~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi 374 (423)
T 3lvm_A 299 GIKDIEEVYLNGDLEHGAPNILNVSF--NYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRF 374 (423)
T ss_dssp HHTTSTTEEEESCSTTBCTTEEEEEE--TTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEE
T ss_pred HHhcCCCEEEeCCccccCCCeEEEEe--CCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEE
Confidence 99887 8888643221 23445555 35678888888877 8887764322100 001378999
Q ss_pred ecCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Q 012104 391 GTPAMTSRGLLEKDFEQIGEFLHRAVTLTL 420 (471)
Q Consensus 391 g~~~~t~~g~~~~d~~~l~~~i~~~l~~~~ 420 (471)
+++.. .+++|++++.+.|.++++...
T Consensus 375 ~~~~~----~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 375 SLGRF----TTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp ECCTT----CCHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCC----CCHHHHHHHHHHHHHHHHHhh
Confidence 98644 348999999999999887654
No 51
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.95 E-value=1.8e-26 Score=234.48 Aligned_cols=364 Identities=13% Similarity=0.064 Sum_probs=239.0
Q ss_pred ccccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 012104 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRAL 87 (471)
Q Consensus 10 ~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~ 87 (471)
+.+..+.+.++..+.+. .+....|+|..+++. .++.+.+++...+.+. ..+|+.. .....+++...+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~~~ 76 (411)
T 2o0r_A 5 SRLRPYATTVFAEMSAL-ATRIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-VNQYPPG------PGSAPLRRAIAAQRR 76 (411)
T ss_dssp GGGGGGSSCHHHHHHHH-HHTTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHHH
T ss_pred hHhHhcCccHHHHHHHH-hhcCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-CCCCCCC------CCCHHHHHHHHHHHH
Confidence 44556666666665533 344567888777653 4789999998877542 1233321 122355555556677
Q ss_pred HhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC--C
Q 012104 88 QTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--T 165 (471)
Q Consensus 88 ~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~--~ 165 (471)
+.+|.+.+.-...+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ +
T Consensus 77 ~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~---------~~~~~g~--~~~~v~~~~~~~~ 145 (411)
T 2o0r_A 77 RHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSP---------VVAMAGA--HRVTVPLVPDGRG 145 (411)
T ss_dssp HHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEECEEETTE
T ss_pred HHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH---------HHHHcCC--EEEEeeccccccC
Confidence 7778542110012445567789999999999999999999999987532 1223443 4445555432 4
Q ss_pred CCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCC------CC
Q 012104 166 GYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPF------EY 234 (471)
Q Consensus 166 ~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~------~~ 234 (471)
+.+|+++|++.+. .++++|++ + +||+|..++. ++|+++|+++|++||+|++|. ++.+.|..+.++ ..
T Consensus 146 ~~~d~~~l~~~l~-~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~ 223 (411)
T 2o0r_A 146 FALDADALRRAVT-PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYE-HLVFDHARHLPLAGFDGMAE 223 (411)
T ss_dssp EECCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCTTCCCCCGGGSTTTGG
T ss_pred CCCCHHHHHHhhc-cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCcChhhccCCCC
Confidence 6699999999986 47888774 4 6789998775 788899999999999999997 444444322222 24
Q ss_pred ccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 235 CHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 235 aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
.|++++|+||++ +|.|.|++++++ ++.+.+.........+.+. ...+++..+++.. ..+++
T Consensus 224 ~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~~~~~-~~~~a~~~~l~~~-~~~~~ 286 (411)
T 2o0r_A 224 RTITISSAAKMFNCTGWKIGWACGPA---------------ELIAGVRAAKQYLSYVGGA-PFQPAVALALDTE-DAWVA 286 (411)
T ss_dssp GEEEEEEHHHHTTCTTTCEEEEECCH---------------HHHHHHHHHHHHHTSCCCT-THHHHHHHHHHHC-HHHHH
T ss_pred CEEEEeechhhcCCccceEEEEeeCH---------------HHHHHHHHHHhhccCCCCh-HHHHHHHHHHhCC-hHHHH
Confidence 689999999996 577899999876 4555443321100111222 2334444566543 34567
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCC-CCCHHHHHHHH-hhcCeEeccCCcCCCCC--------C
Q 012104 313 AYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL-GLTGNKVEKLC-DLCNITVNKNAVFGDSS--------A 382 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~-~~~~~~~~~~L-~~~gI~v~~~~~p~~~~--------~ 382 (471)
+..+++.++++++.+.|++.|+++. .+..++++|+++... +.+..++.+.| +++||.+.++..+.... +
T Consensus 287 ~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~ 365 (411)
T 2o0r_A 287 ALRNSLRARRDRLAAGLTEIGFAVH-DSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQAD 365 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEC-CCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------C
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEec-CCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccccccccc
Confidence 7888888999999999988898875 344566788888642 24677776655 57899998875442111 1
Q ss_pred CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 383 LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 383 ~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
...+.+||++. + ++++++++.+.|.++++.
T Consensus 366 ~~~~~iRis~~--~----~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 366 VWNHLVRFTFC--K----RDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp CGGGCEEEECC--S----CHHHHHHHHHHHGGGGC-
T ss_pred CCCCeEEEEec--C----CHHHHHHHHHHHHHHHhc
Confidence 12468999973 1 478999999988876654
No 52
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.95 E-value=1.2e-27 Score=241.46 Aligned_cols=332 Identities=16% Similarity=0.086 Sum_probs=222.5
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
+.+++-.+.+.+++++++++...+.+.+ |.+......+++ +.+++++|.+. .+.++||++|+.
T Consensus 23 ~~~~l~~~~p~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~gt~al~ 85 (391)
T 3dr4_A 23 DLPRISVAAPRLDGNERDYVLECMDTTW--------ISSVGRFIVEFE----KAFADYCGVKH-----AIACNNGTTALH 85 (391)
T ss_dssp -----CCCCCCCCSSHHHHHHHHHHHTC--------CSSCSHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHH
T ss_pred CCceeccCCCCCCHHHHHHHHHHHHcCC--------ccCCChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 4566666777778899999888775432 111123344444 67888999873 466889999999
Q ss_pred HHHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCC
Q 012104 112 AAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (471)
Q Consensus 112 ~~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s 190 (471)
+++.++ ++|||+|+++++.|.++.. .+...| .+++.++++++++.+|++++++.+.+ ++++|+.+ |
T Consensus 86 ~~l~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~-n 152 (391)
T 3dr4_A 86 LALVAMGIGPGDEVIVPSLTYIASAN---------SVTYCG--ATPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPV-H 152 (391)
T ss_dssp HHHHHHTCCTTCEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCB-C
T ss_pred HHHHHcCCCCcCEEEECCCchHHHHH---------HHHHCC--CEEEEEecCccccCcCHHHHHHhcCC-CceEEEEE-C
Confidence 999999 9999999999999876532 122334 46667777767789999999998863 67887754 5
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeC--CCCcCCCCCeEEEEeeCCCCCCCCCCC
Q 012104 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTT--THKSLRGPRAGMIFYRKGPKPPKKGQP 268 (471)
Q Consensus 191 ~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s--~~K~l~GprgG~i~~~~~~~~~~~~~~ 268 (471)
++|...|+++|+++|+++|++|++|++|+.|....+.....+ .|++++| .||+|+|++||+++++++
T Consensus 153 ~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~--------- 221 (391)
T 3dr4_A 153 LYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDD--------- 221 (391)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCH---------
T ss_pred CCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCH---------
Confidence 899999999999999999999999999987766544322222 3666555 669998889999988763
Q ss_pred CCcccchHhhhhhcCCCCC----------CCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEe
Q 012104 269 EGAVYDFEDKINFAVFPSL----------QGG-PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (471)
Q Consensus 269 ~i~~~~l~~~i~~~~~~~~----------~g~-p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~ 337 (471)
++.+.+......+. .|. .....+ +.++......++++..++..++++++.+.|.+.|+.+.
T Consensus 222 -----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l---~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 293 (391)
T 3dr4_A 222 -----DLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNI---QAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVT 293 (391)
T ss_dssp -----HHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGGGTTSEE
T ss_pred -----HHHHHHHHHHhcCCCCCCcccccccccccCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 34443332111110 010 111111 11222222235677888888999999999988888775
Q ss_pred eC--C----CCCeeEEEEccC-CCCCHHHHHHHHhhcCeEeccCCcCCCCCC---------------CCCCeeEEecCCC
Q 012104 338 TG--G----TENHLVLWDLRP-LGLTGNKVEKLCDLCNITVNKNAVFGDSSA---------------LAPGGVRIGTPAM 395 (471)
Q Consensus 338 ~~--~----~~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~---------------~~~~~iRig~~~~ 395 (471)
.. . ...+++++.+.. .+++..++.+.|.++||.++++..|....+ .....+||++...
T Consensus 294 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~ 373 (391)
T 3dr4_A 294 KPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAG 373 (391)
T ss_dssp CCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTT
T ss_pred CcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCC
Confidence 43 1 122345555543 267788999999999999987653321111 0135789987543
Q ss_pred CCcCCCHHHHHHHHHHHHHHH
Q 012104 396 TSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 396 t~~g~~~~d~~~l~~~i~~~l 416 (471)
++++|++++++.|.+++
T Consensus 374 ----~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 374 ----LTEADIDRVIAALDQVL 390 (391)
T ss_dssp ----CCHHHHHHHHHHHHTTC
T ss_pred ----CCHHHHHHHHHHHHHHh
Confidence 46899999999987653
No 53
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.95 E-value=4.4e-26 Score=229.49 Aligned_cols=359 Identities=13% Similarity=0.089 Sum_probs=239.1
Q ss_pred cccccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012104 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA 86 (471)
Q Consensus 9 ~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~ 86 (471)
++.+....+.++..+.+- ....+.|+|..+.+. .++.+++++...+.+. ..+|+.. .....+++...+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~------~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSAL-AQQHQAINLSQGFPDFDGPRYLQERLAHHVAQG-ANQYAPM------TGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCCHHHHHHHH-HHHTTCEECCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT------TCCHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHH-HhcCCeEEecCCCCCCCCCHHHHHHHHHHHHhh-ccCCCCC------CCCHHHHHHHHHHH
Confidence 344566666666665432 334567888777643 4789999998877542 1233221 11235555555677
Q ss_pred HHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCC
Q 012104 87 LQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG 166 (471)
Q Consensus 87 ~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~ 166 (471)
++.+|.+.+.-...+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++++++
T Consensus 81 ~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~v~~~~~~~ 149 (386)
T 1u08_A 81 ERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAP---------AIALSG--GIVKRMALQPPHF 149 (386)
T ss_dssp HHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTT--CEEEEEECCTTTC
T ss_pred HHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHH---------HHHHcC--CEEEEeecCcccC
Confidence 77778542110013456677889999999999999999999999887542 122334 3555666664457
Q ss_pred CCCHHHHHHHhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC------Cc
Q 012104 167 YIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE------YC 235 (471)
Q Consensus 167 ~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~------~a 235 (471)
.+|++++++.+. .++++|++ + +||+|..++ +++|+++|+++|++||+|++|. ++.+.|..+.++. ..
T Consensus 150 ~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~ 227 (386)
T 1u08_A 150 RVDWQEFAALLS-ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYE-HINFSQQGHASVLAHPQLRER 227 (386)
T ss_dssp CCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTT-TCBCCSSCCCCGGGSHHHHTT
T ss_pred cCCHHHHHHhhc-ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEcccc-ccccCCCCCcChhcccCccCc
Confidence 899999999986 47888775 4 678998886 5788899999999999999997 5555443222221 46
Q ss_pred cEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHH
Q 012104 236 HIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKA 313 (471)
Q Consensus 236 Div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~ 313 (471)
|++++|+||++ +|.|.|++++++ ++.+.+......... +++....++++.+++.. ..++++
T Consensus 228 ~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~ 290 (386)
T 1u08_A 228 AVAVSSFGKTYHMTGWKVGYCVAPA---------------PISAEIRKVHQYLTF-SVNTPAQLALADMLRAE-PEHYLA 290 (386)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHC-THHHHT
T ss_pred EEEEecchhhcCCcccceEEEEcCH---------------HHHHHHHHHHHhhcc-CCChHHHHHHHHHHhCC-cHHHHH
Confidence 79999999996 577889999876 455554432111111 22333444555567654 445677
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCC-CCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEe
Q 012104 314 YAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG-LTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIG 391 (471)
Q Consensus 314 ~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~-~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig 391 (471)
..+++.++++.+.+.|++.|+.+. .+..++++|+++...+ .+..++.+.| +++||.+.++..++.. +..++++||+
T Consensus 291 ~~~~~~~~~~~l~~~L~~~g~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~-~~~~~~iRis 368 (386)
T 1u08_A 291 LPDFYRQKRDILVNALNESRLEIL-PCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD-PFPHKLIRLC 368 (386)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEC-CCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS-CCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeec-CCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCC-CCCCCEEEEE
Confidence 888888999999999998898875 3445677888886421 4677776655 5789999887544321 1235789999
Q ss_pred cCCCCCcCCCHHHHHHHHHHHH
Q 012104 392 TPAMTSRGLLEKDFEQIGEFLH 413 (471)
Q Consensus 392 ~~~~t~~g~~~~d~~~l~~~i~ 413 (471)
+. + ++++++++.+.|.
T Consensus 369 ~~--~----~~~~i~~~~~~l~ 384 (386)
T 1u08_A 369 FA--K----KESTLLAAAERLR 384 (386)
T ss_dssp CC--S----CHHHHHHHHHHHT
T ss_pred Ec--C----CHHHHHHHHHHHh
Confidence 84 2 4788888887764
No 54
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.95 E-value=4.5e-26 Score=232.92 Aligned_cols=339 Identities=15% Similarity=0.068 Sum_probs=229.5
Q ss_pred CCeeEecCCC------CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC-----CCCCCCcee
Q 012104 32 RGIELIASEN------FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH-----LDPTQWGVN 100 (471)
Q Consensus 32 ~~i~li~s~n------~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg-----~~~~~~~~~ 100 (471)
+.|+|..+.. .+++.|++++...+......+|+.. .....++ +.++++++ ++.+ -.
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~~---~v 121 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPS------IGFLSSR----EEIASYYHCPEAPLEAK---DV 121 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCT------TCCHHHH----HHHHHHHCBTTBCCCGG---GE
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCC------CCcHHHH----HHHHHHHhhcCCCCChH---HE
Confidence 4588876552 4689999999887765433344322 1122333 55666776 4433 23
Q ss_pred eecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhh
Q 012104 101 VQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALD 179 (471)
Q Consensus 101 v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~ 179 (471)
++++||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|++++++.+.+
T Consensus 122 ~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~ 190 (427)
T 3dyd_A 122 ILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT---------LAESMGI--EVKLYNLLPEKSWEIDLKQLEYLIDE 190 (427)
T ss_dssp EEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTTC--EEEEEEEEGGGTTEECHHHHHSSCCT
T ss_pred EEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcCC--EEEEEecccccCCCCCHHHHHHHhcc
Confidence 556778899999999999999999999999877642 1223443 445555543 4578999999998864
Q ss_pred CCCcEEE-Ec-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--Ccc---EEEeCCCCc--CC
Q 012104 180 FRPKLII-CG-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCH---IVTTTTHKS--LR 247 (471)
Q Consensus 180 ~~pklIi-~~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aD---iv~~s~~K~--l~ 247 (471)
++++|+ ++ +||+|..++ +++|+++|+++|+++++|++|. ++.+.|..+.++. ..+ ++++|+||+ ++
T Consensus 191 -~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~-~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~ 268 (427)
T 3dyd_A 191 -KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYG-DMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVP 268 (427)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTT-TCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred -CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCch-hhccCCCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence 577665 44 789999999 8899999999999999999997 6655554333332 222 778999997 57
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 248 GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
|.|.|+++++++... +. .++.+.+...... ..+++....++++.++......++++..+++.++++.+.+
T Consensus 269 G~riG~~~~~~~~~~-------~~-~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~ 338 (427)
T 3dyd_A 269 GWRLGWILIHDRRDI-------FG-NEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYG 338 (427)
T ss_dssp GGCCEEEEEECSTTS-------SH-HHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEecCcchh-------hH-HHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 888999998863100 00 0233333221111 1244555566666677654445667888889999999999
Q ss_pred HHHcC-CceEeeCCCCCeeEEEEccC----CCCCHHHHHHH-HhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 328 YLTGK-GYSLVTGGTENHLVLWDLRP----LGLTGNKVEKL-CDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 328 ~L~~~-g~~i~~~~~~~~~~~v~~~~----~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
.|++. |+.++. +...+++|+.+.. .+.+..++.+. ++++||.+.++..++. ++++||++. .+
T Consensus 339 ~L~~~~g~~~~~-p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-----~~~iRis~~------~~ 406 (427)
T 3dyd_A 339 ALAAIPGLRPVR-PSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-----PNFIRVVIT------VP 406 (427)
T ss_dssp HHHHSTTEEEEC-CSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEESC------SC
T ss_pred HHhcCCCceecC-CCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC-----CCeEEEEEC------CC
Confidence 99987 888753 4556677776642 23466666554 4789999988765542 479999973 34
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~ 418 (471)
+++++++.+.|.++++.
T Consensus 407 ~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 407 EVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999988887754
No 55
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.95 E-value=3.2e-27 Score=240.06 Aligned_cols=293 Identities=15% Similarity=0.137 Sum_probs=204.5
Q ss_pred ccChHHH---HHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012104 14 TVDPEIH---DLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKY----SEGMPGNRYYGGNEFIDEIENLCRSRA 86 (471)
Q Consensus 14 ~~d~~~~---~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~~~----~~g~~~~r~~~g~~~~~~lE~~~~~~~ 86 (471)
.+|+++. +.+.+|+++|...+++++++|. ++|++++.+...... .+||+..|+ ..+.+| +++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~-----g~~~Le----~~l 83 (427)
T 3hvy_A 15 NINERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTNSSGYGYNDI-----GRDSLD----RVY 83 (427)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTCH-----HHHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhcccCcCCCCCch-----hHHHHH----HHH
Confidence 4678877 6667888899999999999997 899999988644322 345544432 255565 678
Q ss_pred HHhcCCCCCCCceeee--cCChHHHHHHHHHHhcCCCCEEEEeC-CCCCCccc--ccccccCCccceeccceeEEEeeee
Q 012104 87 LQTFHLDPTQWGVNVQ--PYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLT--HGYYTSGGKKISATSIYFESLPYKV 161 (471)
Q Consensus 87 ~~lfg~~~~~~~~~v~--~~sGt~A~~~~~~all~pGD~Vl~~~-~~~~g~~s--~~~~~~~g~~~~~~g~~~~~~~~~v 161 (471)
++++|++. +.++ ++||++||.+++.++++|||+|++.+ +.|+++.. ++........+...| .+++.++.
T Consensus 84 A~l~g~e~----alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G--~~~~~v~~ 157 (427)
T 3hvy_A 84 ANIFNTES----AFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYG--VKYKMVDL 157 (427)
T ss_dssp HHHHTCSE----EEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGT--CEEEECCC
T ss_pred HHHhCCCc----eEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcC--CEEEEecC
Confidence 89999986 4554 68999999999999999999999998 88876531 000000000111234 34444444
Q ss_pred cCCCCCCCHHHHHHHhhh-CCCcEEEEcC------CCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCC
Q 012104 162 NSSTGYIDYDKLEEKALD-FRPKLIICGG------SAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPF 232 (471)
Q Consensus 162 ~~~~~~iD~~~le~~~~~-~~pklIi~~~------s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~ 232 (471)
+++.+|++++++++++ .+||+|++.+ |++|...|+++|+++|++ +|+++++|++|+.+.. ...|+
T Consensus 158 --~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~----~~~p~ 231 (427)
T 3hvy_A 158 --KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVE----EKEPT 231 (427)
T ss_dssp --BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTS----SSCGG
T ss_pred --CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccccc----CCCCc
Confidence 4678999999999974 5789988543 567888899999999999 8999999999975531 23455
Q ss_pred C-CccEEEeCCCCcCCC---CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-CCCCCC--CCCcHHHHHHHHHHHHH
Q 012104 233 E-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-VFPSLQ--GGPHNHQIGALAVALKQ 305 (471)
Q Consensus 233 ~-~aDiv~~s~~K~l~G---prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-~~~~~~--g~p~~~~iaa~a~al~~ 305 (471)
. ++|++++|+||++.| |+||++++++ ++.+++... ..++.. .+|.......+...+.
T Consensus 232 ~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~---------------~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~- 295 (427)
T 3hvy_A 232 DVGADIIAGSLIKNIGGGIATTGGYIAGKE---------------EYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLF- 295 (427)
T ss_dssp GGTCSEEEEETTSGGGTTTCCSCEEEEECH---------------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-
T ss_pred ccCCeEEEECCcccccccccceEEEEEECH---------------HHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHh-
Confidence 5 689999999999987 8899999986 566666542 234332 2332221111111221
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCe-----eEEEEcc
Q 012104 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENH-----LVLWDLR 351 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~-----~~~v~~~ 351 (471)
....+.++..+|++++++.|++.|+++..+ .+| ++.+.+.
T Consensus 296 ----~~~~r~~~~~~~a~~la~~L~~~g~~V~p~--~~~~~~~li~~~~l~ 340 (427)
T 3hvy_A 296 ----MAPHVTIEAVKGAVFCARIMELAGFDVLPK--YNDKRTDIIQAIKFN 340 (427)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSEEEEECS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhCCCeecCC--CCCCCceEEEEEeCC
Confidence 234677888999999999999999988543 334 5556653
No 56
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.95 E-value=7e-26 Score=223.42 Aligned_cols=321 Identities=16% Similarity=0.178 Sum_probs=219.7
Q ss_pred HHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCcee
Q 012104 23 IEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVN 100 (471)
Q Consensus 23 ~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~ 100 (471)
+.++....+..|.|..++|. ++|.|++++...+... .+||. ....++ ++.+++++|++.+ +
T Consensus 8 ~~~~~~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~--~~y~~-------~~~~~l----r~~la~~~~~~~~----~ 70 (337)
T 3p1t_A 8 MDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARI--NRYPF-------DAEPRV----MRKLAEHFSCPED----N 70 (337)
T ss_dssp ------CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGT--TSCCT-------THHHHH----HHHHHHHHTSCGG----G
T ss_pred ccccccCCCCceEeeCCCCCCCCCHHHHHHHHHhhhhh--ccCCC-------CchHHH----HHHHHHHhCcCHH----H
Confidence 34444556678999988876 4789999998766432 23332 223333 4677888998763 3
Q ss_pred eecCCh-HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh
Q 012104 101 VQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD 179 (471)
Q Consensus 101 v~~~sG-t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~ 179 (471)
|..++| ++++.+++.++ |||+|++.+|.|.++.. .+...| .+++.++++ +++.+|++++++.
T Consensus 71 i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~--- 133 (337)
T 3p1t_A 71 LMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRA---------RIAVSG--LRHFEIGLT-DDLLLDPNDLAQV--- 133 (337)
T ss_dssp EEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHHH---------HHTTSC--CEEEEECBC-TTSSBCHHHHTTC---
T ss_pred EEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHHH---------HHHHcC--CEEEEecCC-CCCCCCHHHHHhh---
Confidence 444555 56888888887 99999999999877542 122334 455666666 4578999999875
Q ss_pred CCCcEEEE-c-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcC--CCCCeEEEE
Q 012104 180 FRPKLIIC-G-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSL--RGPRAGMIF 255 (471)
Q Consensus 180 ~~pklIi~-~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l--~GprgG~i~ 255 (471)
.++++|++ + +||+|..+|.+++.++|+++++ +++|++|. ++...+.........+++++|+||++ +|+|.|+++
T Consensus 134 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~-~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~ 211 (337)
T 3p1t_A 134 SRDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYV-DYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALF 211 (337)
T ss_dssp CTTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTG-GGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEE
T ss_pred cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCCh-hhccccccccccCCCEEEEeeCchhccCcchheEEEE
Confidence 35787764 4 7899999999999999999997 56699997 44332222112224679999999996 688999999
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~ 335 (471)
+++ ++.+.+.....+ .+++...++++..+++. ...+.+..+++.++++.+.+.|++.|+.
T Consensus 212 ~~~---------------~~~~~l~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~ 271 (337)
T 3p1t_A 212 GPS---------------ELIAAMKRKQWF---CNVGTLDLHALEAALDN--DRAREAHIAKTLAQRRRVADALRGLGYR 271 (337)
T ss_dssp CCH---------------HHHHHHHTTSCT---TCSCHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCH---------------HHHHHHHhhcCC---CCCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCcCE
Confidence 876 566666554322 23444455555555543 1245677778888889999999988888
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
+.. +. +.++++... ++.++.+.|.++||.+.++..++. ++++||++. ++++++++.+.|.++
T Consensus 272 ~~~-~~-~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~-----~~~iRis~~-------~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 272 VAS-SE-ANFVLVENA----AGERTLRFLRERGIQVKDAGQFGL-----HHHIRISIG-------REEDNDRLLAALAEY 333 (337)
T ss_dssp BCC-CS-SSEEEEECT----TTHHHHHHHHHTTEECEEGGGGTC-----CSEEEEECC-------CHHHHHHHHHHHHHH
T ss_pred ECC-CC-CeEEEEEcC----CHHHHHHHHHHCCeEEEECccCCC-----CCeEEEecC-------CHHHHHHHHHHHHHH
Confidence 743 33 345566543 346788889999999998866542 479999973 378999999999876
Q ss_pred HH
Q 012104 416 VT 417 (471)
Q Consensus 416 l~ 417 (471)
++
T Consensus 334 ~~ 335 (337)
T 3p1t_A 334 SD 335 (337)
T ss_dssp TC
T ss_pred hh
Confidence 53
No 57
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=9.5e-27 Score=235.74 Aligned_cols=340 Identities=13% Similarity=0.078 Sum_probs=228.9
Q ss_pred CeeEecCC-C--CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 33 GIELIASE-N--FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 33 ~i~li~s~-n--~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
.|+|..+. + ..+|.|++++...+.+....+|+..+ |. ..+.+...+++++++|.+.+.-...+.++||++|
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~---g~---~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a 114 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYR---GD---LGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 114 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTT---CC---HHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCC---CC---HHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHH
Confidence 47775533 4 25789999988877542111232211 11 2344444577888889742110023446667789
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec-----CCCCCCCHHHHHHHhhhCCCcE
Q 012104 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN-----SSTGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 110 ~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~-----~~~~~iD~~~le~~~~~~~pkl 184 (471)
+..++.++++|||+|++..|.|.++.. .+...|. +++.++++ .+++.+|++++++.+.+ ++++
T Consensus 115 ~~~~~~~l~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~ 182 (407)
T 3nra_A 115 LFLAVAATVARGDKVAIVQPDYFANRK---------LVEFFEG--EMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARV 182 (407)
T ss_dssp HHHHHHTTCCTTCEEEEEESCCTHHHH---------HHHHTTC--EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCE
T ss_pred HHHHHHHhCCCCCEEEEcCCcccchHH---------HHHHcCC--EEEEeecccccccCcCCCcCHHHHHHHHhh-CCcE
Confidence 999999999999999999999876542 1223443 45555553 25678999999999975 7887
Q ss_pred EE-Ec-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-------CccEEEeCCCCcC--CCCC
Q 012104 185 II-CG-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-------YCHIVTTTTHKSL--RGPR 250 (471)
Q Consensus 185 Ii-~~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-------~aDiv~~s~~K~l--~Gpr 250 (471)
|+ ++ +||+|..++ +++|+++|+++|+++++|++|. ++.+.|....++. ..++++.|+||++ +|.|
T Consensus 183 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 261 (407)
T 3nra_A 183 FLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYS-RLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYR 261 (407)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGC
T ss_pred EEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeee
Confidence 75 44 788999998 8888999999999999999997 4444443332322 2458999999995 5778
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
.|++++++ ++.+.+.........++ +....++.+.++... ...+++..++..++++.|.+.|+
T Consensus 262 ~G~~~~~~---------------~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 324 (407)
T 3nra_A 262 LGVAFGSR---------------AIIARMEKLQAIVSLRA-AGYSQAVLRGWFDEA-PGWMEDRIARHQAIRDELLHVLR 324 (407)
T ss_dssp CEEEEECH---------------HHHHHHHHHHHHHTSSS-CHHHHGGGGGTTCCC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCH---------------HHHHHHHHHHhhhccCC-ChHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 89999876 45555443221222222 233333333333321 23567788888899999999999
Q ss_pred cC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 331 GK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 331 ~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
+. |+.++. +..++++|+++...+.+..++.+.| +++||.+.++..++. ...+.+||+++. ++++++++
T Consensus 325 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~~~iRis~~~------~~~~i~~~ 394 (407)
T 3nra_A 325 GCEGVFART-PQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP---HTADSVRLNFSQ------DHEAAVAA 394 (407)
T ss_dssp TSTTCBCCC-CSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCT---TCTTBEEEECCS------CHHHHHHH
T ss_pred cCCCceecc-CCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEeCC------CHHHHHHH
Confidence 87 887753 4455677888865567888887777 567999998765542 245799999842 47899999
Q ss_pred HHHHHHHHHH
Q 012104 409 GEFLHRAVTL 418 (471)
Q Consensus 409 ~~~i~~~l~~ 418 (471)
.+.|.++++.
T Consensus 395 ~~~l~~~~~~ 404 (407)
T 3nra_A 395 ARRIVTLVER 404 (407)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 58
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.95 E-value=6.5e-26 Score=227.32 Aligned_cols=336 Identities=17% Similarity=0.153 Sum_probs=225.5
Q ss_pred CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--
Q 012104 41 NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL-- 118 (471)
Q Consensus 41 n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all-- 118 (471)
...++.|++++...+.+.|. .++..+..+....+..+ ..++++++++|++.+ ..+.++||++|+.+++.++.
T Consensus 11 ~~~~~~v~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~~~~~~~ 84 (384)
T 1eg5_A 11 TRVDDRVLEEMIVFYREKYG--NPNSAHGMGIEANLHME-KAREKVAKVLGVSPS---EIFFTSCATESINWILKTVAET 84 (384)
T ss_dssp CCCCHHHHHHHHHHHHTCCC--CTTCSSHHHHHHHHHHH-HHHHHHHHHHTSCGG---GEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHH-HHHHHHHHHcCCCCC---eEEEECCHHHHHHHHHHhhhhh
Confidence 46789999999988876553 23221211222222333 346788999998753 23556778899999999997
Q ss_pred --CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCc
Q 012104 119 --EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPR 194 (471)
Q Consensus 119 --~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~ 194 (471)
+|||+|++.++.|.++.... ..+...| .+++.++++ +++.+|+++|++.+.+ ++++|++. +||+|.
T Consensus 85 ~~~~gd~vl~~~~~~~~~~~~~------~~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 154 (384)
T 1eg5_A 85 FEKRKRTIITTPIEHKAVLETM------KYLSMKG--FKVKYVPVD-SRGVVKLEELEKLVDE-DTFLVSIMAANNEVGT 154 (384)
T ss_dssp TTTTCCEEEECTTSCHHHHHHH------HHHHHTT--CEEEECCBC-TTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred ccCCCCEEEECCCCchHHHHHH------HHHHhcC--CEEEEEccC-CCCccCHHHHHHHhCC-CCeEEEEECCCCCccc
Confidence 89999999998886653210 0011233 455666666 4578999999999864 78888754 678999
Q ss_pred cccHHHHHHHHHHhC--CEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCC
Q 012104 195 DWDYARFRAVADKCG--ALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPE 269 (471)
Q Consensus 195 ~~d~~~i~~ia~~~g--~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~ 269 (471)
..|+++|.++|+++| ++||+|++|+.|. .+.++. ++|++++|+||++ ||.| |++++++++
T Consensus 155 ~~~~~~i~~l~~~~~~~~~li~Dea~~~~~-----~~~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~--------- 219 (384)
T 1eg5_A 155 IQPVEDVTRIVKKKNKETLVHVDAVQTIGK-----IPFSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGV--------- 219 (384)
T ss_dssp BCCHHHHHHHHHHHCTTCEEEEECTTTTTT-----SCCCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTS---------
T ss_pred ccCHHHHHHHHHhcCCceEEEEEhhhhcCC-----cccCchhcCCCEEEecHHHhc-CCCceEEEEEcCCC---------
Confidence 999999999999999 9999999997442 122233 5799999999974 6665 999998752
Q ss_pred CcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCC--CCee
Q 012104 270 GAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT--ENHL 345 (471)
Q Consensus 270 i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~--~~~~ 345 (471)
.+...+.... .....++++...++++..+++... .++++..+++.++++++.+.|++.|++++.... ....
T Consensus 220 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 294 (384)
T 1eg5_A 220 ----PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNT 294 (384)
T ss_dssp ----CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTE
T ss_pred ----ccccccccCcccccccCCCCChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCE
Confidence 0011111000 001223556666666666776542 356788889999999999999988888754321 1234
Q ss_pred EEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC----------C----CCCCeeEEecCCCCCcCCCHHHHHHHHHH
Q 012104 346 VLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS----------A----LAPGGVRIGTPAMTSRGLLEKDFEQIGEF 411 (471)
Q Consensus 346 ~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~----------~----~~~~~iRig~~~~t~~g~~~~d~~~l~~~ 411 (471)
+++.+. +.+..++.+.|.+.||.+.++..++... . ...+.+||++...+ +++|++++.+.
T Consensus 295 ~~~~~~--~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~----~~~~i~~~~~~ 368 (384)
T 1eg5_A 295 LSVSFP--NIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN----TEEEVDYFLKK 368 (384)
T ss_dssp EEEECT--TCCHHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTC----CHHHHHHHHHH
T ss_pred EEEEeC--CCCHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCC----CHHHHHHHHHH
Confidence 555554 4578888888999999998865332110 0 01368999985433 48999999999
Q ss_pred HHHHHHH
Q 012104 412 LHRAVTL 418 (471)
Q Consensus 412 i~~~l~~ 418 (471)
|.++++.
T Consensus 369 l~~~~~~ 375 (384)
T 1eg5_A 369 IEEILSF 375 (384)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 59
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.95 E-value=3.7e-26 Score=230.56 Aligned_cols=331 Identities=15% Similarity=0.062 Sum_probs=223.2
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
+..|+|..+++. .++.+++++...+.... .+|+. .....++++...+++.+.+|++.+. ...+.++||++
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~lr~~la~~~~~~~g~~~~~-~~v~~~~g~t~ 112 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-VKYTD------PRGIYELREGIAKRIGERYKKDISP-DQVVVTNGAKQ 112 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-CCCCC------TTCCHHHHHHHHHHHHHHHTCCCCG-GGEEEESHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCCHHHHHHHHHHHHHHhCCCCCH-HHEEEecCHHH
Confidence 467888777653 47899999887774421 23322 1223456555556666666863111 02344556678
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|+++|++.+.+ ++++|++
T Consensus 113 al~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 180 (389)
T 1o4s_A 113 ALFNAFMALLDPGDEVIVFSPVWVSYIP---------QIILAGG--TVNVVETFMSKNFQPSLEEVEGLLVG-KTKAVLI 180 (389)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEECCGGGTTCCCHHHHHHTCCT-TEEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcCC--EEEEEecCCccCCCCCHHHHHHhccc-CceEEEE
Confidence 9999999999999999999999877542 1223343 455555554 2467999999998864 6887764
Q ss_pred -c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCC--C---CCccEEEeCCCCcC--CCCCeEEEE
Q 012104 188 -G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP--F---EYCHIVTTTTHKSL--RGPRAGMIF 255 (471)
Q Consensus 188 -~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p--~---~~aDiv~~s~~K~l--~GprgG~i~ 255 (471)
+ +||+|..++ +++|+++|+++|++|++|++|. ++...|..++. + ...|++++|+||++ +|.|.|+++
T Consensus 181 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~ 259 (389)
T 1o4s_A 181 NSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYD-SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLI 259 (389)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEE
Confidence 4 678999877 7888999999999999999998 44443322211 1 24689999999996 567789999
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~ 335 (471)
+++ ++.+.+......+..+.+...+ ++...+++. ++++..+++.++++.+.+.|++.|++
T Consensus 260 ~~~---------------~~~~~l~~~~~~~~~~~~~~~~-~a~~~~l~~----~~~~~~~~~~~~~~~l~~~L~~~g~~ 319 (389)
T 1o4s_A 260 SSE---------------KVATAVSKIQSHTTSCINTVAQ-YAALKALEV----DNSYMVQTFKERKNFVVERLKKMGVK 319 (389)
T ss_dssp CCH---------------HHHHHHHHHHHHHTCSCCHHHH-HHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eCH---------------HHHHHHHHHhhhcccCCCHHHH-HHHHHHHhc----cHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 876 4555554322222222333222 333334432 25677788888999999999988887
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
++. +..++++|+++. .+..++.+.|. ++||.+.++..++. ++++||++.. +++++++..+.|.+
T Consensus 320 ~~~-~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~-----~~~~Ris~~~------~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 320 FVE-PEGAFYLFFKVR---GDDVKFCERLLEEKKVALVPGSAFLK-----PGFVRLSFAT------SIERLTEALDRIED 384 (389)
T ss_dssp CCC-CSBSSEEEEECS---SCHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEECCS------CHHHHHHHHHHHHH
T ss_pred eec-CCcceEEEEeCC---CCHHHHHHHHHHHCCEEEeCchhcCC-----CCeEEEEEeC------CHHHHHHHHHHHHH
Confidence 753 445667788875 46777877774 89999988765432 3689999842 47889888888877
Q ss_pred HHH
Q 012104 415 AVT 417 (471)
Q Consensus 415 ~l~ 417 (471)
+++
T Consensus 385 ~l~ 387 (389)
T 1o4s_A 385 FLN 387 (389)
T ss_dssp HHT
T ss_pred HHh
Confidence 664
No 60
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.95 E-value=2e-26 Score=229.13 Aligned_cols=345 Identities=11% Similarity=0.036 Sum_probs=226.7
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
+.+++.+++..++++|++++...+.+... ++. .+ ...+.+.++ .+++++++++|++..+ ..+.++||++|+.
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~-~~~~~la~~~g~~~~~--~v~~~~g~t~al~ 75 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKIG-VIS-HR---SKKFEEVYK-TASDNLKTLLELPSNY--EVLFLASATEIWE 75 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTTT-TSC-TT---SHHHHHHHH-HHHHHHHHHTTCCTTE--EEEEESCHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCcc-CcC-CC---CHHHHHHHH-HHHHHHHHHhCCCCCc--EEEEeCCchHHHH
Confidence 45789999999999999888777655331 111 12 223333333 4568899999985432 2455678889999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--C
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--G 189 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~ 189 (471)
+++.++++| .+++..+++.++. +. ..+...| .+++.++++ .++.+|+++++ + ..++|+|++. +
T Consensus 76 ~~~~~l~~~--~~i~~~~~~~~~~---~~----~~~~~~g--~~~~~v~~~-~~~~~d~~~l~--~-~~~~~~v~~~~~~ 140 (362)
T 3ffr_A 76 RIIQNCVEK--KSFHCVNGSFSKR---FY----EFAGELG--REAYKEEAA-FGKGFYPADIT--V-PADAEIICLTHNE 140 (362)
T ss_dssp HHHHHHCSS--EEEEEECSHHHHH---HH----HHHHHTT--CEEEEEECC-TTCCCCGGGCC--C-CTTCCEEEEESEE
T ss_pred HHHHhccCC--cEEEEcCcHHHHH---HH----HHHHHhC--CCeEEEecC-CCCCCCHHHHh--c-cCCccEEEEEcCC
Confidence 999999988 4444443332221 10 0111234 344555555 45789999998 4 3578988754 6
Q ss_pred CCCCccccHHHHHHHHHHh-CCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCCCCC----C
Q 012104 190 SAYPRDWDYARFRAVADKC-GALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP----P 263 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~-g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~----~ 263 (471)
|++|..+|+++|.++|+++ |+++++|++|..|. .+.++..+|++++|+||++.||.| |+++.++++.. .
T Consensus 141 nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~-----~~~~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~ 215 (362)
T 3ffr_A 141 TSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPY-----PKFDWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKAL 215 (362)
T ss_dssp TTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTS-----SCCCTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHH
T ss_pred CCcceeCCHHHHHHHHHhCCCCEEEEecccccCC-----cccChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhc
Confidence 8999999999999999999 99999999997542 223333489999999999986766 78777763100 0
Q ss_pred CCCCCCCc-ccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCC-
Q 012104 264 KKGQPEGA-VYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG- 340 (471)
Q Consensus 264 ~~~~~~i~-~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~- 340 (471)
..+|.... .+++....+........++++...++++..+++.+...++++..++..++++++.+.|++. |++++...
T Consensus 216 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 295 (362)
T 3ffr_A 216 LAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDA 295 (362)
T ss_dssp HHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCG
T ss_pred cccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCCh
Confidence 00000000 0011111111101112456677777777777776554457888899999999999999998 88886411
Q ss_pred --CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 341 --TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 341 --~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
...+++++.+.. +..++.+.|.+.||.++++..+. ..+.+||++...+ +++|++++.+.|++++
T Consensus 296 ~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~~-----~~~~iRis~~~~~----~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 296 KLRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGSK-----KETQIRIANFPAH----SLEQVHKLVQTLKEKI 361 (362)
T ss_dssp GGBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGGG-----TTTEEEEECCTTS----CHHHHHHHHHHHHHHT
T ss_pred hhcCCceEEEecCC---CHHHHHHHHHHCCeEEecCcccc-----CCCEEEEECCCCC----CHHHHHHHHHHHHHHh
Confidence 124566777653 77888888888899998764332 3478999986543 4899999999998753
No 61
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.95 E-value=2.5e-26 Score=230.52 Aligned_cols=337 Identities=15% Similarity=0.105 Sum_probs=226.0
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
++.|+|..+++. .+|.+++++...+.+....+|+ .......+++...+++++.+|++.+.-...+.+++|++
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYC------LKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCC------CHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------CCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 457888877754 4789999998777432112232 22234455554455666666876211001244566678
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~ 188 (471)
|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.+++ ++++.+|++++++.+. .++++|++.
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g--~~~~~~~~-~~~~~~d~~~l~~~l~-~~~~~v~l~ 165 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYPSYFG---------AARVAS--LRTFLIPL-REDGLADLKAVPEGVW-REAKVLLLN 165 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHTT--CEEEEECB-CTTSSBCGGGSCHHHH-HHEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHhHHH---------HHHHcC--CEEEEeeC-CCCCCCCHHHHHHhhc-cCceEEEEC
Confidence 9999999999999999999998876532 122234 34555555 3556789999999886 468888764
Q ss_pred --CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----CccEEEeCCCCcC--CCCCeEEEEe
Q 012104 189 --GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCHIVTTTTHKSL--RGPRAGMIFY 256 (471)
Q Consensus 189 --~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aDiv~~s~~K~l--~GprgG~i~~ 256 (471)
+||+|..++ +++|+++|+++|++||+|++|. ++.+.+..++.+. ..+++++|+||++ +|.|.|++++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 244 (376)
T 2dou_A 166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYV-DQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG 244 (376)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEec
Confidence 678998887 4677889999999999999997 5544443222222 2458899999996 6788999988
Q ss_pred eCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceE
Q 012104 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (471)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i 336 (471)
++ ++.+.+.....+... +++....++...+++.. ...+++..+++.++++.+.+.|++. +++
T Consensus 245 ~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~ 306 (376)
T 2dou_A 245 SE---------------EALARLERVKGVIDF-NQYAGVLRMGVEALKTP-KEVVRGYARVYRERALGMAEALKGV-LSL 306 (376)
T ss_dssp CH---------------HHHHHHHHHHHHHCC-CSCHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHTTT-SEE
T ss_pred CH---------------HHHHHHHHHHHhccc-CCCHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHh-cCc
Confidence 76 455555432221112 22334444454556442 3356777888888999999999887 776
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. .+..++++|+++.. +.+..++.+.|.+.||.+.++..++. ...+++||++.. +++++++..+.|.+++
T Consensus 307 ~-~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~---~~~~~~Ris~~~------~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 307 L-PPRATMYLWGRLPE-GVDDLEFGLRLVERGVALAPGRGFGP---GGKGFVRIALVR------PLEELLEAAKRIREAL 375 (376)
T ss_dssp C-CCCBSSEEEEECCT-TCCHHHHHHHHHHTTEECEEGGGGCG---GGTTEEEEECCS------CHHHHHHHHHHHHHTC
T ss_pred c-CCCeeEEEEEECCC-CCCHHHHHHHHHHCCEEEcCchhhCC---CCCCeEEEEecC------CHHHHHHHHHHHHHHh
Confidence 4 34456678888853 56778887778777999988765432 124789999842 4788888888887654
No 62
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=7.5e-26 Score=227.10 Aligned_cols=351 Identities=12% Similarity=0.049 Sum_probs=226.8
Q ss_pred cCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCC-CCceeeecCChHHH
Q 012104 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT-QWGVNVQPYSGSPA 109 (471)
Q Consensus 31 ~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~-~~~~~v~~~sGt~A 109 (471)
...+.+.+++..++++|++++...+.+.+ + ....+..+ ..+++++++++.... .....+.++||++|
T Consensus 4 ~~~~~~~p~p~~~~~~v~~a~~~~~~~~~---~--------~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~~g~t~a 71 (385)
T 2bkw_A 4 SVDTLLIPGPIILSGAVQKALDVPSLGHT---S--------PEFVSIFQ-RVLKNTRAVFKSAAASKSQPFVLAGSGTLG 71 (385)
T ss_dssp CCCEECSSSSCCCCHHHHHTTSCCCCCTT---S--------HHHHHHHH-HHHHHHHHHTTCCGGGTCEEEEEESCTTHH
T ss_pred ccceeecCCCcCchHHHHHHHhccccccC---C--------HHHHHHHH-HHHHHHHHHhCCCCCCCCceEEEcCchHHH
Confidence 34578889999999999999875443211 1 12222222 245677778776410 00124556788999
Q ss_pred HHHHHHHhc---CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee-cCCCCCCCHHHHHHHhhhCCCcEE
Q 012104 110 NFAAYTAVL---EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV-NSSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 110 ~~~~~~all---~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v-~~~~~~iD~~~le~~~~~~~pklI 185 (471)
+.+++.+++ +|||+|++++..+.+ .+.. ..+...| .+++.+++ + +++.+|+++|++++.+.++++|
T Consensus 72 l~~~~~~~~~~~~~gd~vlv~~~~~~~----~~~~---~~~~~~g--~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~~v 141 (385)
T 2bkw_A 72 WDIFASNFILSKAPNKNVLVVSTGTFS----DRFA---DCLRSYG--AQVDVVRPLK-IGESVPLELITEKLSQNSYGAV 141 (385)
T ss_dssp HHHHHHHHSCTTCSCCEEEEECSSHHH----HHHH---HHHHHTT--CEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEE
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCcch----HHHH---HHHHHcC--CceEEEecCC-CCCCCCHHHHHHHHhcCCCCEE
Confidence 999999997 999999888543221 1100 0112234 35556666 4 5678999999999976578988
Q ss_pred EEc--CCCCCccccHHHHHHHHHHh--CCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeC
Q 012104 186 ICG--GSAYPRDWDYARFRAVADKC--GALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRK 258 (471)
Q Consensus 186 i~~--~s~~g~~~d~~~i~~ia~~~--g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~ 258 (471)
++. +|++|...|+++|.++|+++ |++|++|++|..|. .+.++. ++|++++|+||++.||.| |++++++
T Consensus 142 ~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~ 216 (385)
T 2bkw_A 142 TVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGC-----EEFEFDEWGVDFALTASQKAIGAPAGLSISLCSS 216 (385)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTT-----SCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECH
T ss_pred EEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCC-----ccccccccCceEEEecCccccccCCcceEEEEcH
Confidence 754 68899999999999999999 99999999997542 222233 579999999999888766 8988876
Q ss_pred CCC--CCC------CCCCCCcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 012104 259 GPK--PPK------KGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 259 ~~~--~~~------~~~~~i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~ 328 (471)
+.. ... ..+.......+........ .....++++...++++..+++.+...++++..+++.++++++.+.
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 296 (385)
T 2bkw_A 217 RFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDS 296 (385)
T ss_dssp HHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 310 000 0000000000000000000 001124566777777777777654434677888889999999999
Q ss_pred H-HcCCceEeeCC----CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEe-cCCCCCcCCCH
Q 012104 329 L-TGKGYSLVTGG----TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIG-TPAMTSRGLLE 402 (471)
Q Consensus 329 L-~~~g~~i~~~~----~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig-~~~~t~~g~~~ 402 (471)
| ++.|++++.+. ...+++++.+.. ..++.+.|.++||.+.++..+. ...+.+||+ ++. +.+..++
T Consensus 297 L~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~gi~v~~g~~~~----~~~~~iRis~~~~-~~~~~~~ 367 (385)
T 2bkw_A 297 LVNGLQLTSVSRYPSNMSAHGLTAVYVAD----PPDVIAFLKSHGVVIAGGIHKD----IGPKYIRIGHMGV-TACNKNL 367 (385)
T ss_dssp HHTTTCCEESSCSSSTTBCSSCEEEECSC----HHHHHHHHHHTTEECBCCCCTT----TGGGEEEECCCGG-GTSSTTC
T ss_pred HHHhcCceecccCcccccCCceEEEecCC----HHHHHHHHHHCCeEEeCCCCcc----cCCCEEEEEcccc-ccccCCH
Confidence 9 87788876321 235677887742 6778888888999998764321 234789999 531 1112347
Q ss_pred HHHHHHHHHHHHHHH
Q 012104 403 KDFEQIGEFLHRAVT 417 (471)
Q Consensus 403 ~d~~~l~~~i~~~l~ 417 (471)
+|++++.+.|.++++
T Consensus 368 e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 368 PYMKNCFDLIKLALQ 382 (385)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999988764
No 63
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.95 E-value=2e-26 Score=232.92 Aligned_cols=332 Identities=15% Similarity=0.125 Sum_probs=226.4
Q ss_pred CeeEecCCC--C-CcHHHHHHHhhhhhccCCCCCCCCCCCCcc-hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 33 GIELIASEN--F-TSFAVIEALGSALTNKYSEGMPGNRYYGGN-EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 33 ~i~li~s~n--~-~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~-~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
.|+|..+++ + .++.+++++...+... ..++.+.++..|. +..+. .++++++++|.+. .+.++||++
T Consensus 45 ~idl~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~-----v~~~~ggt~ 114 (398)
T 3a2b_A 45 VLMFGSNSYLGLTTDTRIIKAAQDALEKY-GTGCAGSRFLNGTLDIHVE----LEEKLSAYVGKEA-----AILFSTGFQ 114 (398)
T ss_dssp EEECSCSCTTCGGGCHHHHHHHHHHHHHH-CSCCCSBTTTTCCCHHHHH----HHHHHHHHHTCSE-----EEEESSHHH
T ss_pred EEEeecccccCCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCCcHHHHH----HHHHHHHHhCCCc-----EEEECCHHH
Confidence 456666654 3 5789999988877442 2233322222232 33333 3467888899753 466788999
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC---CCcEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF---RPKLI 185 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~---~pklI 185 (471)
|+..++.++++|||+|++.+|.|+++.. .+...|. +++.++ .+|++++++.+.+. ++++|
T Consensus 115 a~~~~~~~~~~~gd~V~~~~p~~~~~~~---------~~~~~g~--~~~~v~------~~d~~~l~~~l~~~~~~~~~~v 177 (398)
T 3a2b_A 115 SNLGPLSCLMGRNDYILLDERDHASIID---------GSRLSFS--KVIKYG------HNNMEDLRAKLSRLPEDSAKLI 177 (398)
T ss_dssp HHHHHHHHSSCTTCEEEEETTCCHHHHH---------HHHHSSS--EEEEEC------TTCHHHHHHHHHTSCSSSCEEE
T ss_pred HHHHHHHHHhCCCCEEEECCccCHHHHH---------HHHHcCC--ceEEeC------CCCHHHHHHHHHhhccCCceEE
Confidence 9999999999999999999999876542 1223343 444443 26899999998764 68888
Q ss_pred EEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhcc-ccCC-C--CCC-CccEEEeCCCCcCCCCCeEEEEeeC
Q 012104 186 ICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAA-QEAA-N--PFE-YCHIVTTTTHKSLRGPRAGMIFYRK 258 (471)
Q Consensus 186 i~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~-g~~~-~--p~~-~aDiv~~s~~K~l~GprgG~i~~~~ 258 (471)
++. +||+|...|+++|+++|+++|++|++|++|+.+.... +... . .+. ++|++++|+||++. |.||++++++
T Consensus 178 ~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~GG~~~~~~ 256 (398)
T 3a2b_A 178 CTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLGGFVAGDA 256 (398)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSCEEEEECH
T ss_pred EEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCCcEEEeCH
Confidence 754 6889999999999999999999999999997553211 1110 0 111 36899999999984 6679999876
Q ss_pred CCCCCCCCCCCCcccchHhhhhhcCCC-CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEe
Q 012104 259 GPKPPKKGQPEGAVYDFEDKINFAVFP-SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (471)
Q Consensus 259 ~~~~~~~~~~~i~~~~l~~~i~~~~~~-~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~ 337 (471)
++.+.+.....+ ...++++..+.++...+++.. .+.++..+++.++++++.+.|++.|++++
T Consensus 257 ---------------~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 319 (398)
T 3a2b_A 257 ---------------DVIDFLKHNARSVMFSASMTPASVASTLKALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLG 319 (398)
T ss_dssp ---------------HHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred ---------------HHHHHHHHhcccceecCCCCHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 455555432111 112334444544444566553 23456778888899999999998888875
Q ss_pred eCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 338 TGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 338 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
. + .++++|+.+.. +.+..++.+.|.+.||.+.++..|..+ ...+++||+++.. .++++++++.+.|.++++
T Consensus 320 ~-~-~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~iRis~~~~----~~~e~i~~~~~~l~~~l~ 390 (398)
T 3a2b_A 320 A-T-ESPILPIFIRS-NEKTFWVTKMLQDDGVFVNPVVSPAVP--AEESLIRFSLMAT----HTYDQIDEAIEKMVKVFK 390 (398)
T ss_dssp S-C-CSSEEEEECCC-HHHHHHHHHHHHHTTEECEEECTTTSC--GGGCEEEEECCTT----CCHHHHHHHHHHHHHHHH
T ss_pred C-C-CCCEEEEEcCC-HHHHHHHHHHHHHCCcEEEeeCCCCCC--CCCceEEEEEeCC----CCHHHHHHHHHHHHHHHH
Confidence 3 2 35677888742 345667777787789999887655321 1347899998543 348999999999998875
Q ss_pred H
Q 012104 418 L 418 (471)
Q Consensus 418 ~ 418 (471)
.
T Consensus 391 ~ 391 (398)
T 3a2b_A 391 Q 391 (398)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=1.5e-26 Score=232.61 Aligned_cols=345 Identities=14% Similarity=0.047 Sum_probs=225.3
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCC-CCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPG-NRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~-~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
.+.|..+. ...++.|++++...+.+... +.+. .+.|. ......+ ..++.+++++|++.+ ..+.+.||++|+
T Consensus 17 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~y~--~~~~~~~-~l~~~la~~~g~~~~---~v~~~~g~t~a~ 89 (390)
T 1elu_A 17 KTYFNFGGQGILPTVALEAITAMYGYLQE-NGPFSIAANQ--HIQQLIA-QLRQALAETFNVDPN---TITITDNVTTGC 89 (390)
T ss_dssp SEECCTTTCCCCCHHHHHHHHHHHHHHHH-HCSSSHHHHH--HHHHHHH-HHHHHHHHHTTSCGG---GEEEESSHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHHHhc-cCCcchhhHH--HHHHHHH-HHHHHHHHHcCCCHH---HEEEeCChHHHH
Confidence 45554443 34577899999887754321 1111 01111 1112223 345788999998753 235567888999
Q ss_pred HHHHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhhCCCcEEEEc
Q 012104 111 FAAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKLIICG 188 (471)
Q Consensus 111 ~~~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~~~pklIi~~ 188 (471)
.+++.++ ++|||+|++.++.|.++..... ......| .+++.+++++ +++.+|++++++.+.+ ++++|++.
T Consensus 90 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~~g--~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 161 (390)
T 1elu_A 90 DIVLWGLDWHQGDEILLTDCEHPGIIAIVQ-----AIAARFG--ITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILS 161 (390)
T ss_dssp HHHHHHSCCCTTCEEEEETTCCHHHHHHHH-----HHHHHHC--CEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEE
T ss_pred HHHHhCCCCCCCCEEEEecCcccHHHHHHH-----HHHHHhC--cEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEe
Confidence 9999999 8999999999998876531000 0011223 3455555543 4578999999998864 68887754
Q ss_pred --CCCCCccccHHHHHHHHH----HhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCC
Q 012104 189 --GSAYPRDWDYARFRAVAD----KCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKG 259 (471)
Q Consensus 189 --~s~~g~~~d~~~i~~ia~----~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~ 259 (471)
+|++|...|+++|+++|+ ++|+++++|++|..|. .+..+. +.|++++|+||++.||.| |+++++++
T Consensus 162 ~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~-----~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~ 236 (390)
T 1elu_A 162 HLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGS-----LPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 236 (390)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTT-----BCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred ccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCC-----cCCChhhcCCCEEEccccccccCCCceEEEEECHH
Confidence 688999999999999999 9999999999997552 222232 579999999998666655 99999875
Q ss_pred CCC-CCC---CCCCCc------ccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHH
Q 012104 260 PKP-PKK---GQPEGA------VYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAVALGNY 328 (471)
Q Consensus 260 ~~~-~~~---~~~~i~------~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~-~~~~~~~~~~na~~l~~~ 328 (471)
+.. ... ++.... .|.+.+... .+ ..++++...++++..+++.+...+ +++..+++.++++++.+.
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~ 312 (390)
T 1elu_A 237 CLGEINPTYVGWRSITYGAKGEPTGWAEGGK--RF--EVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRG 312 (390)
T ss_dssp TGGGCCCCSCCTTTEEECTTSCEEEECSGGG--GG--CCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCccccCCcccccccCcccccccchH--hh--CCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 311 100 000000 000000000 11 124556666666666776554333 678888899999999999
Q ss_pred HHcC-CceEeeC-CCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHH
Q 012104 329 LTGK-GYSLVTG-GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFE 406 (471)
Q Consensus 329 L~~~-g~~i~~~-~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~ 406 (471)
|++. |++++.+ .....++++++. .+.+..++.+.|.++||.+.++. .++++||+++..+ ++++++
T Consensus 313 L~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~gi~v~~~~--------~~~~iRis~~~~~----~~~~i~ 379 (390)
T 1elu_A 313 LNQLPHVHCLATSAPQAGLVSFTVD-SPLGHRAIVQKLEEQRIYLRTIA--------DPDCIRACCHYIT----DEEEIN 379 (390)
T ss_dssp HHHSTTEEESCSSCCSSSEEEEEEC-SSSCHHHHHHHHHHTTEECEEET--------TTTEEEEECCTTC----CHHHHH
T ss_pred HHhcCCcEEecCccccccEEEEEcC-CCCCHHHHHHHHHHCCEEEEecC--------CCCeEEEecccCC----CHHHHH
Confidence 9987 8887632 223445666764 35678888888889999998753 2478999985443 489999
Q ss_pred HHHHHHHH
Q 012104 407 QIGEFLHR 414 (471)
Q Consensus 407 ~l~~~i~~ 414 (471)
++.+.|.+
T Consensus 380 ~~~~~l~~ 387 (390)
T 1elu_A 380 HLLARLAD 387 (390)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99888754
No 65
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=7.7e-26 Score=229.69 Aligned_cols=320 Identities=14% Similarity=0.121 Sum_probs=220.4
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCC
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHD 122 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g-~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD 122 (471)
+|.+.+++...+. +|..++.+.+.+.| .+....++ +++++++|.+. .+.++||++|+..++.++++|||
T Consensus 75 ~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~----~~la~~~g~~~-----~i~~~sGt~a~~~~l~~~~~~gd 144 (409)
T 3kki_A 75 HPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIE----KRLAKFTGFDE-----CLLSQSGWNANVGLLQTICQPNT 144 (409)
T ss_dssp CHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHH----HHHHHHhCCCe-----EEEecchHHHHHHHHHHhcCCCC
Confidence 7899999988774 44434433332223 23333443 67888899875 36678999999999999999999
Q ss_pred EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHH
Q 012104 123 RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYAR 200 (471)
Q Consensus 123 ~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~ 200 (471)
.|++.++.|+++.. .+...|. +++.++ .+|+++|++++.+.++++|++. +|++|...|+++
T Consensus 145 ~Vl~~~~~~~~~~~---------~~~~~g~--~~~~~~------~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 145 NVYIDFFAHMSLWE---------GARYANA--QAHPFM------HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp EEEEETTSCHHHHH---------HHHHTTC--EEEEEC------TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred EEEECCCcCHHHHH---------HHHHcCC--eEEEec------CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 99999988876532 1223343 444442 3799999999987678988865 678999999999
Q ss_pred HHHHHHHhCCEEEEeccccchhhcc-ccC---CCCC-CCccEEEeCCCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccch
Q 012104 201 FRAVADKCGALLLCDMAHISGLVAA-QEA---ANPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF 275 (471)
Q Consensus 201 i~~ia~~~g~~livD~a~~~glv~~-g~~---~~p~-~~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l 275 (471)
|+++|+++|++|++|++|..|.... |.. ...+ +..|+++.|+||++.++ ||+++++++ +
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~-gg~v~~~~~---------------~ 271 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYR-AGAIWCNNE---------------V 271 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSS-CEEEEESSS---------------G
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCC-ceEEEECHH---------------H
Confidence 9999999999999999997543321 110 0111 25689999999998666 899998874 3
Q ss_pred HhhhhhcCCCC-CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCC
Q 012104 276 EDKINFAVFPS-LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG 354 (471)
Q Consensus 276 ~~~i~~~~~~~-~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~ 354 (471)
.+.+.....+. ..++++...+++...+++... ..++..+++.+++++|.+.|++.|+++. ...+++++.+.. .
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~--~~~~~~~~~~~~~~~l~~~L~~~g~~~~---~~~~~~~~~~~~-~ 345 (409)
T 3kki_A 272 NRCVPFISYPAIFSSTLLPYEAAGLETTLEIIE--SADNRRQHLDRMARKLRIGLSQLGLTIR---SESQIIGLETGD-E 345 (409)
T ss_dssp GGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHTTTCCCC---CSSSEEEEEEES-H
T ss_pred HHHHHHhCcCccccCCCcHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHcCCccC---CCCCEEEEEeCC-H
Confidence 33332211111 112334455555555666542 2356777888999999999999998875 245567777653 1
Q ss_pred CCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 355 LTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 355 ~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+..++.+.|.+.||.+.+...|.. +...+.+||+++..+ ++++++++.+.|.++++.
T Consensus 346 ~~~~~~~~~L~~~Gv~v~~~~~~~~--~~~~~~iRi~~~~~~----t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 346 RNTEKVRDYLESNGVFGSVFCRPAT--SKNKNIIRLSLNSDV----NDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHTTEECEEECTTSS--CTTCEEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCceEeeeCCCCc--CCCCcEEEEEccCCC----CHHHHHHHHHHHHHHHhc
Confidence 2345677788888999987544322 234579999986543 489999999999988764
No 66
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.95 E-value=3.9e-26 Score=233.60 Aligned_cols=341 Identities=13% Similarity=0.103 Sum_probs=231.5
Q ss_pred cCCeeEecCCCCC--cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~~--s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
++.|+|..+++.. ++.|++++...+.+....+|+.. .....+++...+++.+.+|.+.+.- ..+.+++|++
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t~g~t~ 116 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL------DGLPELKQEASRFAKLFVNIDIPAR-ACVPTVGSMQ 116 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC------CChHHHHHHHHHHHHHhhCCCCCcc-cEEEeCCHHH
Confidence 4678998777643 78999999888764332344332 1123455444455555556432211 2344556678
Q ss_pred HHHHHHHHhc--CCCC--EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcE
Q 012104 109 ANFAAYTAVL--EPHD--RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 109 A~~~~~~all--~pGD--~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pkl 184 (471)
|+.+++.+++ +||| +|++.+|.|.++.. .+...|. +++.++++++++.+|+++|+++++..++++
T Consensus 117 al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~ 185 (437)
T 3g0t_A 117 GCFVSFLVANRTHKNREYGTLFIDPGFNLNKL---------QCRILGQ--KFESFDLFEYRGEKLREKLESYLQTGQFCS 185 (437)
T ss_dssp HHHHHHHHHTTSCTTCSCCEEEEESCCHHHHH---------HHHHHTC--CCEEEEGGGGCTTHHHHHHHHHHTTTCCCE
T ss_pred HHHHHHHHHhcCCCCCccEEEEeCCCcHhHHH---------HHHHcCC--EEEEEeecCCCCccCHHHHHHHHhcCCceE
Confidence 9999999998 9999 99999998876532 1223343 445556555566799999999995567887
Q ss_pred EEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCC--------CC---CCccEEEeCCCCcC--
Q 012104 185 IIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAAN--------PF---EYCHIVTTTTHKSL-- 246 (471)
Q Consensus 185 Ii~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~--------p~---~~aDiv~~s~~K~l-- 246 (471)
|++ + +||+|..++ +++|+++|+++|++||+|++|+ ++.+.+..+. .+ ...+++++|+||++
T Consensus 186 v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 264 (437)
T 3g0t_A 186 IIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYF-GMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSY 264 (437)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSC
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchh-hcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCC
Confidence 764 5 788999887 5667889999999999999997 4444332211 12 13458999999994
Q ss_pred CCCCeEEEEeeCCCCCCCCCCCCCcccchHh-h-----------------hhhcCCCCCCCCCcHHHHHHHHHHHHHhcc
Q 012104 247 RGPRAGMIFYRKGPKPPKKGQPEGAVYDFED-K-----------------INFAVFPSLQGGPHNHQIGALAVALKQAST 308 (471)
Q Consensus 247 ~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~-~-----------------i~~~~~~~~~g~p~~~~iaa~a~al~~~~~ 308 (471)
+|.|.|++++++ ++.+ . +....... ..+++....++...+++....
T Consensus 265 ~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~ 328 (437)
T 3g0t_A 265 AGQRIGVLMISG---------------KLYEREYPDLEESFGRLRFGEALSSSALYAL-SSGATHSAQWGMAAMLKACND 328 (437)
T ss_dssp GGGCCEEEEECH---------------HHHHCBCGGGHHHHSCSBHHHHHHTTHHHHH-HSSSCHHHHHHHHHHHHHHHT
T ss_pred ccceeEEEEECH---------------HHhhhhhhcccccccccchhHHHHHHHHhhh-cCCCCHHHHHHHHHHHhCcHh
Confidence 677889999986 3443 3 33211111 123344445555555654311
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHcCCceEe------eCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCC
Q 012104 309 PA---FKAYAKQVKANAVALGNYLTGKGYSLV------TGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD 379 (471)
Q Consensus 309 ~~---~~~~~~~~~~na~~l~~~L~~~g~~i~------~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~ 379 (471)
+ +++..+++.++++.+.+.|++.|+++. .++..++++|+++. +.+..++.+.|.++||.+.++..++.
T Consensus 329 -~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~~gi~v~~~~~~~~ 405 (437)
T 3g0t_A 329 -GEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFYFTVGYK--GMDSSKLIEKFVRYGMCAITLKTTGS 405 (437)
T ss_dssp -TSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSEEEEEET--TCCHHHHHHHHHHTTEECEESTTTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEEEEEecC--CCCHHHHHHHHHHcCeEEeeccccCC
Confidence 1 678888899999999999999898886 23245677888886 67888998888889999988765542
Q ss_pred CCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 380 SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 380 ~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
. .++++||+++.. ++++++++.+.|.++++
T Consensus 406 ~---~~~~iRis~~~~-----~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 406 K---RNEAMRICTSLL-----PESQFPDLEKRLQMLNA 435 (437)
T ss_dssp C---CTTCEEEECSSS-----CGGGHHHHHHHHHHHHH
T ss_pred C---CCCEEEEEEecC-----CHHHHHHHHHHHHHHHh
Confidence 1 236899998543 36899999999888764
No 67
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.95 E-value=2.1e-25 Score=224.92 Aligned_cols=337 Identities=16% Similarity=0.130 Sum_probs=225.6
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHH-HHHHHHHHHHHhcC--CCCCCCceeeecCC
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDE-IENLCRSRALQTFH--LDPTQWGVNVQPYS 105 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~-lE~~~~~~~~~lfg--~~~~~~~~~v~~~s 105 (471)
++.|+|..+++. .+|.|.+++...+.+. ..+|+.. ... +++...+++.+.+| ++.+ ..+.+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~lr~~la~~l~~~~g~~~~~~---~v~~t~g 95 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG-VFGYSRW--------KNDEFLAAIAHWFSTQHYTAIDSQ---TVVYGPS 95 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC-CCCCCCS--------CCHHHHHHHHHHHHHHSCCCCCGG---GEEEESC
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC-CCCCCCC--------ChHHHHHHHHHHHHHhcCCCCCHH---HEEEcCC
Confidence 356788666642 4789999998877432 1233321 123 55444566666677 4332 2344566
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC--CCCCCHHHHHHHhhhCCCc
Q 012104 106 GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPK 183 (471)
Q Consensus 106 Gt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~--~~~iD~~~le~~~~~~~pk 183 (471)
|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|++.+.+.+++
T Consensus 96 ~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~ 164 (390)
T 1d2f_A 96 VIYMVSELIRQWSETGEGVVIHTPAYDAFYK---------AIEGNQR--TVMPVALEKQADGWFCDMGKLEAVLAKPECK 164 (390)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEESCCHHHHH---------HHHHTTC--EEEEEECEECSSSEECCHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCcHHHHH---------HHHHCCC--EEEEeecccCCCccccCHHHHHHHhccCCCe
Confidence 6789999999999999999999998876532 1223343 4455555533 2459999999999755788
Q ss_pred EEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-C-ccEEEeCCCCcC--CCCCe
Q 012104 184 LIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-Y-CHIVTTTTHKSL--RGPRA 251 (471)
Q Consensus 184 lIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~-aDiv~~s~~K~l--~Gprg 251 (471)
+|++ + +||+|..++ +++|+++|+++|++||+|++|. ++...|..+.++ . . .|+ ++|+||++ +|.|.
T Consensus 165 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~ 242 (390)
T 1d2f_A 165 IMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHM-DMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTG 242 (390)
T ss_dssp EEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTT-TCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCC
T ss_pred EEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhh
Confidence 8774 4 678998887 7888999999999999999997 554444322222 1 2 277 99999995 67788
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC-CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF-PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~-~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
|+++++++ ++.+.+..... ....++++...+++...+++.. ...+++..+++.++++.+.+.|+
T Consensus 243 G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~ 307 (390)
T 1d2f_A 243 AYGIIENS--------------SSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG-APWLDALRIYLKDNLTYIADKMN 307 (390)
T ss_dssp EEEEECSH--------------HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCH--------------HHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998643 45555543221 1112344555555555566642 33567778888889999999998
Q ss_pred c-C-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 331 G-K-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 331 ~-~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
+ . |+.++ .+..++++|+++...+++..++.+.|. ++||.+.++..++. ..++.+||+++. .++++++
T Consensus 308 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~~Ris~~~------~~~~l~~ 377 (390)
T 1d2f_A 308 AAFPELNWQ-IPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE---EGRGFVRLNAGC------PRSKLEK 377 (390)
T ss_dssp HHCSSCCCC-CCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG---GGTTEEEEECCS------CHHHHHH
T ss_pred hhCCCCEEe-cCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC---CCCCeEEEEecC------CHHHHHH
Confidence 7 4 77764 344566678888643467788877776 78999988765431 124789999843 2578888
Q ss_pred HHHHHHHHHH
Q 012104 408 IGEFLHRAVT 417 (471)
Q Consensus 408 l~~~i~~~l~ 417 (471)
..+.|.++++
T Consensus 378 ~l~~l~~~l~ 387 (390)
T 1d2f_A 378 GVAGLINAIR 387 (390)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887777664
No 68
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.95 E-value=6.1e-26 Score=227.17 Aligned_cols=330 Identities=14% Similarity=0.054 Sum_probs=221.0
Q ss_pred ccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 30 QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 30 ~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
.+..|+|..+++. .++.+.+++...+.+.. .+|+. ......+++...+++.+.+|.+.+.. -.+.++||+
T Consensus 28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~~~~~l~~~la~~~~~~~g~~~~~~-~v~~~~g~~ 99 (370)
T 2z61_A 28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-THYTD------SRGILELREKISELYKDKYKADIIPD-NIIITGGSS 99 (370)
T ss_dssp TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHSSCCCCGG-GEEEESSHH
T ss_pred CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-cCCCC------CCCCHHHHHHHHHHHHHHhCCCCChh-hEEECCChH
Confidence 3467888777653 47899999887775421 12322 12223555544566666666432211 235566778
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++ +|++++++.+.+ ++++|++
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~v~-------~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 100 LGLFFALSSIIDDGDEVLIQNPCYPCYKN---------FIRFLG--AKPVFCD-------FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHHHTT--CEEEEEC-------SSHHHHHHHCCS-SEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCchhHHH---------HHHHcC--CEEEEeC-------CCHHHHHHhccc-CceEEEE
Confidence 99999999999999999999999876532 122233 3444442 799999998864 6787764
Q ss_pred -c-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCC--C---CCccEEEeCCCCcC--CCCCeEEEEeeC
Q 012104 188 -G-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANP--F---EYCHIVTTTTHKSL--RGPRAGMIFYRK 258 (471)
Q Consensus 188 -~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p--~---~~aDiv~~s~~K~l--~GprgG~i~~~~ 258 (471)
+ +||+|..+|.+ |.++|+++|++|++|++|. ++...|..++. + ...|++++|+||++ +|.|.|++++++
T Consensus 161 ~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 238 (370)
T 2z61_A 161 NSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYN-GLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISND 238 (370)
T ss_dssp ESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTT-TCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred cCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchh-hcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECH
Confidence 4 67899999999 9999999999999999998 44444422221 1 14679999999996 577889999887
Q ss_pred CCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEee
Q 012104 259 GPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT 338 (471)
Q Consensus 259 ~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~ 338 (471)
++.+.+........ .+++...+++...+++.....++++..+++.++++++.+.|++.|+++..
T Consensus 239 ---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~ 302 (370)
T 2z61_A 239 ---------------EIIEAILKLQQNLF-ISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNN 302 (370)
T ss_dssp ---------------HHHHHHHHHHHHHT-SSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCC
T ss_pred ---------------HHHHHHHHHHhhcc-cCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC
Confidence 45555543221111 13333344444444433112345677788888999999999888887753
Q ss_pred CCCCCeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 339 GGTENHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 339 ~~~~~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+..++++|+++.. +..++.+.|. ++||.+.++..++. ...+++||+++ .+++++++..+.|.++++
T Consensus 303 -~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~~Ri~~~------~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 303 -PIGAYYVFPNIGE---DGREFAYKLLKEKFVALTPGIGFGS---KGKNYIRISYA------NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp -CCBTTEECCBCSS---CHHHHHHHHHHHHCEECEEGGGGCG---GGSSBEEEECC------SCHHHHHHHHHHHHHHHC
T ss_pred -CCcceEEEEecCC---CHHHHHHHHHHhCCEEEeCchhhCC---CCCCEEEEEEe------CCHHHHHHHHHHHHHHHh
Confidence 3446667777753 6677777775 89999988765432 12478999985 247889988888877653
No 69
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.2e-25 Score=225.22 Aligned_cols=335 Identities=16% Similarity=0.154 Sum_probs=226.7
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
++.|+|..+++. .+|.|++++...+.+.. .+|+. . +. ++++...+++.+.+|.+...- ..+.++||++
T Consensus 23 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~-~---~~----~lr~~la~~~~~~~~~~~~~~-~i~~t~g~~~ 92 (377)
T 3fdb_A 23 QGVLPLWVAESDFSTCPAVLQAITDAVQREA-FGYQP-D---GS----LLSQATAEFYADRYGYQARPE-WIFPIPDVVR 92 (377)
T ss_dssp TTSEECCSSCCCSCCCHHHHHHHHHHHHTTC-CSSCC-S---SC----CHHHHHHHHHHHHHCCCCCGG-GEEEESCHHH
T ss_pred CCeeeecccCCCCCCCHHHHHHHHHHHHcCC-CCCCC-C---CH----HHHHHHHHHHHHHhCCCCCHH-HEEEeCChHH
Confidence 467888877764 47899999988775532 23443 1 12 333333455666666432111 2345667788
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEE-E
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII-C 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi-~ 187 (471)
|+.+++.++++|||+|++..|.|.++.. .+...| .+++.++++++ +|++++++.+++ ++++|+ +
T Consensus 93 a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~---~d~~~l~~~l~~-~~~~v~i~ 157 (377)
T 3fdb_A 93 GLYIAIDHFTPAQSKVIVPTPAYPPFFH---------LLSATQ--REGIFIDATGG---INLHDVEKGFQA-GARSILLC 157 (377)
T ss_dssp HHHHHHHHHSCTTCCEEEEESCCTHHHH---------HHHHHT--CCEEEEECTTS---CCHHHHHHHHHT-TCCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHhHHH---------HHHHcC--CEEEEccCCCC---CCHHHHHHHhcc-CCCEEEEe
Confidence 9999999999999999999999876542 122334 34555665632 999999999975 577666 4
Q ss_pred c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccc-cCCCCCCC-----ccEEEeCCCCcC--CCCCeEEEE
Q 012104 188 G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQ-EAANPFEY-----CHIVTTTTHKSL--RGPRAGMIF 255 (471)
Q Consensus 188 ~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g-~~~~p~~~-----aDiv~~s~~K~l--~GprgG~i~ 255 (471)
+ +||+|..++. ++|+++|+++|+++|+|++|. ++...| ..+.++.. .++++.|+||++ +|.|.|+++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~ 236 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHA-PLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQII 236 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-hhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEE
Confidence 4 6789998865 566677999999999999997 555555 22223321 238899999996 677889887
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC--C
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK--G 333 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~--g 333 (471)
+.++ ++.+.+.... .....+++...+++...++... ...+++..+++.++++++.+.|++. |
T Consensus 237 ~~~~--------------~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 300 (377)
T 3fdb_A 237 FSNP--------------SDAEHWQQLS-PVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPG 300 (377)
T ss_dssp CCSH--------------HHHHHHHHSC-HHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred eCCH--------------HHHHHHHHHH-HhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 7542 5555554422 1112234455555555566653 3456788888899999999999884 8
Q ss_pred ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHH
Q 012104 334 YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 413 (471)
Q Consensus 334 ~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~ 413 (471)
+++. .+..+.++|+++...+.+.+.+..+++++||.+.++..++.. .++.+||++. + +++++++..+.|.
T Consensus 301 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~---~~~~~Ris~~--~----~~e~i~~~l~~l~ 370 (377)
T 3fdb_A 301 AKIT-PMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED---GTGFCRLNFA--T----SREVLEEAIDRMA 370 (377)
T ss_dssp CEEC-CCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG---GTTEEEEECC--S----CHHHHHHHHHHHH
T ss_pred ceEe-cCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC---CCCEEEEEeC--C----CHHHHHHHHHHHH
Confidence 8885 445566778888765555344566667779999987655421 3579999974 2 4789999998888
Q ss_pred HHHH
Q 012104 414 RAVT 417 (471)
Q Consensus 414 ~~l~ 417 (471)
++++
T Consensus 371 ~~l~ 374 (377)
T 3fdb_A 371 KAVS 374 (377)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 70
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.95 E-value=1.8e-25 Score=228.34 Aligned_cols=366 Identities=11% Similarity=0.035 Sum_probs=240.9
Q ss_pred cccccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHH
Q 012104 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNK--YSEGMPGNRYYGGNEFIDEIENLCRS 84 (471)
Q Consensus 9 ~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~--~~~g~~~~r~~~g~~~~~~lE~~~~~ 84 (471)
++.+...++.++..+.+. ..+...|+|..+.+. .++.+++++...+... ...+|+. ......+++...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~g~~~l~~~la~ 88 (429)
T 1yiz_A 16 PKRYQGSTKSVWVEYIQL-AAQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR------GFGHPRLVQALSK 88 (429)
T ss_dssp SSSCCCCTTCHHHHHHHH-HHHHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC------SSCCHHHHHHHHH
T ss_pred hHHhhhCCchHHHHHHHH-hccCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC------CCCcHHHHHHHHH
Confidence 455666777777776653 334567888777643 4789999998877541 0112322 1112345444456
Q ss_pred HHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC
Q 012104 85 RALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS 164 (471)
Q Consensus 85 ~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~ 164 (471)
++.+.+|.+.+.-.-.+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++
T Consensus 89 ~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~--~~~~~~~~~~ 157 (429)
T 1yiz_A 89 LYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEP---------MVKAAGG--IPRFIPLKPN 157 (429)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEECBCC
T ss_pred HHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHcCC--EEEEEeCCcc
Confidence 6667778532110012445566789999999999999999999999877542 1223343 4555555543
Q ss_pred ---------CCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCC
Q 012104 165 ---------TGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAAN 230 (471)
Q Consensus 165 ---------~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~ 230 (471)
++.+|+++|++.+. .++++|++ + +||+|..++ +++|+++|+++|++||+|++|. ++.+.|....
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~ 235 (429)
T 1yiz_A 158 KTGGTISSADWVLDNNELEALFN-EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE-HMVFEPFEHI 235 (429)
T ss_dssp CSSSSEEGGGCBCCHHHHHHHCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTSCCC
T ss_pred cccccccccCcccCHHHHHHHhc-cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc-ccccCCCCCc
Confidence 46799999999886 47887774 4 678998885 7888999999999999999997 5555442111
Q ss_pred C---C---CCccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHH
Q 012104 231 P---F---EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA 302 (471)
Q Consensus 231 p---~---~~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~a 302 (471)
+ + .+.|++++|+||++ +|.|.|++++++ ++.+.+......... +++....++...+
T Consensus 236 ~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~~~ 299 (429)
T 1yiz_A 236 RICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPE---------------ALLKNLQMVHQNCVY-TCATPIQEAIAVG 299 (429)
T ss_dssp CGGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEESCH---------------HHHHHHHHHHHTTTC-CCCHHHHHHHHHH
T ss_pred ChhhccCCcCceEEEecchhccCCCCcceEEEEeCH---------------HHHHHHHHHHhhccc-CCChHHHHHHHHH
Confidence 2 2 14689999999995 567889999876 455555432111111 2333344455556
Q ss_pred HHH-----hc-cHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCC-----------CCHHHHHHHH-
Q 012104 303 LKQ-----AS-TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG-----------LTGNKVEKLC- 364 (471)
Q Consensus 303 l~~-----~~-~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~L- 364 (471)
++. .. ...+++..+++.++++.|.+.|++.|+.+.. +..++++|+++.... .+..++.+.|
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (429)
T 1yiz_A 300 FETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPTV-PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMT 378 (429)
T ss_dssp HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHH
T ss_pred HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEEcccccccccccccccCCCHHHHHHHHH
Confidence 665 21 2346777888888999999999888988754 345667888886421 3456666655
Q ss_pred hhcCeEeccCCcCCCCC--CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 365 DLCNITVNKNAVFGDSS--ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 365 ~~~gI~v~~~~~p~~~~--~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+++||.+.++..++... ....+++||+++ + ++++++++.+.|.++++
T Consensus 379 ~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~----~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 379 KSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--K----KDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHTSEECBCGGGGSCGGGGGGTTTEEEEECC--S----CHHHHHHHHHHHHHHSC
T ss_pred HhCCEEEeCchHhCCCcccCCCCCeEEEEec--C----CHHHHHHHHHHHHHhcc
Confidence 58999998875443211 012478999984 2 47899999999887653
No 71
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.95 E-value=2.3e-25 Score=226.43 Aligned_cols=341 Identities=13% Similarity=0.085 Sum_probs=225.0
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCC-CceeeecCChH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQ-WGVNVQPYSGS 107 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~-~~~~v~~~sGt 107 (471)
+..|+|..+++. .+|.+++++...+.+....+|+. ......+++...+++.+.+|.+.+. . ..+.++||+
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~ia~~~~~~~g~~~~~~~-~v~~t~g~~ 109 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYST------SRGIPRLRRAISHWYRDRYDVQIDPES-EAIVTIGSK 109 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHTC---------C------TTCCHHHHHHHHHHHHHHHCCCCCTTT-SEEEESCHH
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCC------CCCcHHHHHHHHHHHHHHhCCCCCCCc-CEEEcCChH
Confidence 356888777654 47899999887764321122321 1122355544445565556853211 0 135567788
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHHHhhhCCCcEEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDFRPKLII 186 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~~~~~~~pklIi 186 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++++ ++.+|++++++.+. .++++|+
T Consensus 110 ~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~ 177 (412)
T 2x5d_A 110 EGLAHLMLATLDHGDTILVPNPSYPIHIY---------GAVIAG--AQVRSVPLVPGIDFFNELERAIRESI-PKPRMMI 177 (412)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHHT--CEEEEEECSTTSCHHHHHHHHHHTEE-SCCSEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCchhHHH---------HHHHcC--CEEEEeecCCccCCCCCHHHHHHhcc-cCceEEE
Confidence 99999999999999999999999876532 122334 35555666644 33489999999886 4788887
Q ss_pred E-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCC---C---CCccEEEeCCCCcC--CCCCeEE
Q 012104 187 C-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP---F---EYCHIVTTTTHKSL--RGPRAGM 253 (471)
Q Consensus 187 ~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p---~---~~aDiv~~s~~K~l--~GprgG~ 253 (471)
+ + +||+|..++ +++|+++|+++|++||+|++|. ++.+.|..+.+ + ...+++++|+||++ +|.|.|+
T Consensus 178 l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 256 (412)
T 2x5d_A 178 LGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYA-DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGF 256 (412)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEE
T ss_pred ECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEE
Confidence 5 4 678998886 4678899999999999999997 44443322111 2 13569999999996 6778899
Q ss_pred EEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012104 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333 (471)
Q Consensus 254 i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g 333 (471)
+++++ ++.+.+........ .+++....++...+++.. ..++++..+++.++++.+.+.|++.|
T Consensus 257 ~~~~~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g 319 (412)
T 2x5d_A 257 MVGNP---------------ELVSALARIKSYHD-YGTFTPLQVAAIAALEGD-QQCVRDIARQYQQRRDVLVKGLREAG 319 (412)
T ss_dssp EEECH---------------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHSC-SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCH---------------HHHHHHHHHHhhhc-cCCCHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99876 45555543221111 123344444455566543 34567788888899999999998878
Q ss_pred ceEeeCCCCCeeEEEEccCCCC---CHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 334 YSLVTGGTENHLVLWDLRPLGL---TGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 334 ~~i~~~~~~~~~~~v~~~~~~~---~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
++++ .+..++++|+++.. ++ +..++.+.| +++||.+.++..++. ...+++||+++. +++++++..
T Consensus 320 ~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~------~~~~l~~~l 388 (412)
T 2x5d_A 320 WMVE-NPKASMYVWAKIPE-PYAHLGSLEFAKKLLQDAKVSVSPGIGFGD---YGDDHVRFALIE------NRDRLRQAV 388 (412)
T ss_dssp CCCC-CCSBSSEEEEECCT-TTGGGCHHHHHHHHHHHHCEECEEGGGGCG---GGTTEEEEECCS------CHHHHHHHH
T ss_pred CEec-CCCeeeEEEEEcCC-ccCCCCHHHHHHHHHHHCCEEEeCchhhCC---CCCCeEEEEecC------CHHHHHHHH
Confidence 8774 34456678888842 44 667776666 568999988765532 124789999843 478999999
Q ss_pred HHHHHHHHHH
Q 012104 410 EFLHRAVTLT 419 (471)
Q Consensus 410 ~~i~~~l~~~ 419 (471)
+.|.++++..
T Consensus 389 ~~l~~~l~~~ 398 (412)
T 2x5d_A 389 RGIKAMFRAD 398 (412)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9988887653
No 72
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=8.9e-27 Score=232.85 Aligned_cols=334 Identities=10% Similarity=0.029 Sum_probs=219.7
Q ss_pred CCeeEec--CCCCCcHHHHHHHhhhhhccCCCCCC--CCCCCCcchhHHHHHHHHHHH-HHHhcCCCCCCCceeeecCCh
Q 012104 32 RGIELIA--SENFTSFAVIEALGSALTNKYSEGMP--GNRYYGGNEFIDEIENLCRSR-ALQTFHLDPTQWGVNVQPYSG 106 (471)
Q Consensus 32 ~~i~li~--s~n~~s~~v~~a~~~~l~~~~~~g~~--~~r~~~g~~~~~~lE~~~~~~-~~~lfg~~~~~~~~~v~~~sG 106 (471)
+.+.|.. +...+++.|++++...+......++. ....+...+...++ +++ +++++|++ . .+.+++|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~la~~~~~~-~----v~~~~g~ 78 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDF----IHNQLPKFLGCD-V----ARVTNGA 78 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHH----HHTHHHHHTTSS-E----EEEESSH
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHH----HHHHHHHHcCCC-E----EEEeCCh
Confidence 3455544 34567899999998776543211111 11111122333333 467 88999986 2 3445666
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee--ecCCCCCCCHHHHHHHhhh----C
Q 012104 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK--VNSSTGYIDYDKLEEKALD----F 180 (471)
Q Consensus 107 t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~--v~~~~~~iD~~~le~~~~~----~ 180 (471)
++|+.+++.++++|||+|++.++.|.++.. .+...|. +++.++ ++ +++.+|+++|++.+.+ .
T Consensus 79 t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~-~~~~~d~~~l~~~l~~~~~~~ 146 (371)
T 2e7j_A 79 REAKFAVMHSLAKKDAWVVMDENCHYSSYV---------AAERAGL--NIALVPKTDY-PDYAITPENFAQTIEETKKRG 146 (371)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHH---------HHHHTTC--EEEEECCCCT-TTCCCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhCCCCEEEEccCcchHHHH---------HHHHcCC--eEEEeecccC-CCCCcCHHHHHHHHHhhcccC
Confidence 899999999999999999999998876542 1223443 455555 55 3578999999999874 3
Q ss_pred CCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcCCCC-CeEEEE
Q 012104 181 RPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSLRGP-RAGMIF 255 (471)
Q Consensus 181 ~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gp-rgG~i~ 255 (471)
++++|++. +||+|...|+++|.++|+++|++|++|++|..|. .+.++. ++|++++|+||++.+| ++|+++
T Consensus 147 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~-----~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~ 221 (371)
T 2e7j_A 147 EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGR-----MPVSLKEIGADFIVGSGHKSMAASGPIGVMG 221 (371)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTT-----BCCCHHHHTCSEEEEEHHHHSSCCSSCEEEE
T ss_pred CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCC-----CCCChhhcCCCEEEecCCcCCCCCCCcEEEE
Confidence 67877744 6889999999999999999999999999998542 222222 5799999999998665 569999
Q ss_pred eeCCCCCCCCCCCCCcccchHhh-hhhcCCCCC------CCCCcHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHHH
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDK-INFAVFPSL------QGGPHNHQIGALAVALKQASTPAFKAYAKQV--KANAVALG 326 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~-i~~~~~~~~------~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~--~~na~~l~ 326 (471)
+++++ .++ +......+. .++++...++++..+++.+.. ++.+++ .++++++.
T Consensus 222 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~l~ 282 (371)
T 2e7j_A 222 MKEEW---------------AEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE----RIKRWDEEVEKARRFA 282 (371)
T ss_dssp ECTTT---------------TTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH----HGGGHHHHHHHHHHHH
T ss_pred Eechh---------------hhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 98742 222 222111111 245556666666566655321 556667 78889999
Q ss_pred HHHHcCCceEeeCCC-CCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC-CCCCCCeeE-EecCCCCCcCCCHH
Q 012104 327 NYLTGKGYSLVTGGT-ENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS-SALAPGGVR-IGTPAMTSRGLLEK 403 (471)
Q Consensus 327 ~~L~~~g~~i~~~~~-~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~-~~~~~~~iR-ig~~~~t~~g~~~~ 403 (471)
+.|++.|++++.+.. ..+++|+++. +..++.+.|.+.||.+.+ ..+... ....++.+| |+++.. ..+++
T Consensus 283 ~~L~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~---~~~~~ 354 (371)
T 2e7j_A 283 AEMEKLGIKQLGDNPHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTY---GLSDE 354 (371)
T ss_dssp HHHHHTTCEEESSSSCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HHHHTTEECSCTTCCSEEEEECT---TCCHH
T ss_pred HHHHHcCcEEecCCCccCceEEEECC----CHHHHHHHHHHCCEEEEe-ccccccccCCCCCceEEEEeecc---CCCHH
Confidence 999888988864321 3557888874 567788888899999976 322110 001147899 998543 02489
Q ss_pred HHHHHHHHHHHHHHH
Q 012104 404 DFEQIGEFLHRAVTL 418 (471)
Q Consensus 404 d~~~l~~~i~~~l~~ 418 (471)
+++++.+.|.++++.
T Consensus 355 ~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 355 EVDYVLNAFKEIIEK 369 (371)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887753
No 73
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.95 E-value=7.1e-26 Score=229.70 Aligned_cols=343 Identities=15% Similarity=0.068 Sum_probs=225.5
Q ss_pred cCCeeEecCCC-----CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCC
Q 012104 31 CRGIELIASEN-----FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS 105 (471)
Q Consensus 31 ~~~i~li~s~n-----~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~s 105 (471)
++.|+|..+++ ..++.+++++...+.+.+ .+|+. ......+++...+++.+.+|.+.+.- -.+.++|
T Consensus 38 ~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~------~~g~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g 109 (406)
T 1xi9_A 38 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-NYYGD------SEGLPELRKAIVEREKRKNGVDITPD-DVRVTAA 109 (406)
T ss_dssp CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-CSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESH
T ss_pred CCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-CCCCC------CCCcHHHHHHHHHHHHHhcCCCCCHH-HEEEcCC
Confidence 46788877766 347899999887775432 12322 12234555555566666666432211 2344556
Q ss_pred hHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHHhhhCCCcE
Q 012104 106 GSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 106 Gt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~~~~~~pkl 184 (471)
|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|+++|++.+.+ ++++
T Consensus 110 ~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~ 177 (406)
T 1xi9_A 110 VTEALQLIFGALLDPGDEILVPGPSYPPYTG---------LVKFYGG--KPVEYRTIEEEDWQPDIDDIRKKITD-RTKA 177 (406)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHHTTC--EEEEEEEEGGGTSEECHHHHHHHCCT-TEEE
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCccHHH---------HHHHcCC--EEEEeecCCCcCCcCCHHHHHHhhCc-CceE
Confidence 6789999999999999999999998876431 1223343 455566664 3467899999999874 6887
Q ss_pred EEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCC--C-CCc-cEEEeCCCCcC--CCCCeEE
Q 012104 185 IIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP--F-EYC-HIVTTTTHKSL--RGPRAGM 253 (471)
Q Consensus 185 Ii~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p--~-~~a-Div~~s~~K~l--~GprgG~ 253 (471)
|++ + +||+|..++ +++|+++|+++|++|++|++|. ++.+.+..++. + ... +++++|+||++ +|.|.|+
T Consensus 178 v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 256 (406)
T 1xi9_A 178 IAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYD-LMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGY 256 (406)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTT-TCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEE
T ss_pred EEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcc-ccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEE
Confidence 764 3 678998876 7888999999999999999997 44443222111 1 234 78999999996 5778899
Q ss_pred EE--eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 254 IF--YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 254 i~--~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
++ .+++. . .++.+.+....... .+++....+++..+++.. ..++++..+++.++++.+.+.|++
T Consensus 257 ~~~~~~~~~---------~--~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~ 322 (406)
T 1xi9_A 257 MYFVDPENK---------L--SEVREAIDRLARIR--LCPNTPAQFAAIAGLTGP-MDYLKEYMKKLKERRDYIYKRLNE 322 (406)
T ss_dssp EEEECTTCT---------T--HHHHHHHHHHHHHT--CCSCSHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCchh---------H--HHHHHHHHHHHHhh--cCCCHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 65510 0 02333333221111 123333444555566543 345677888888999999999998
Q ss_pred C-CceEeeCCCCCeeEEEEccCC-CCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 332 K-GYSLVTGGTENHLVLWDLRPL-GLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 332 ~-g~~i~~~~~~~~~~~v~~~~~-~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
. |+.+. .+..+.++|+++... +.+..++.+.| +++||.+.++..++. ...+++||++. .++++++++
T Consensus 323 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~lRis~~------~~~~~i~~~ 392 (406)
T 1xi9_A 323 IPGISTT-KPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE---YGAGHFRAVFL------PPIEILEEA 392 (406)
T ss_dssp STTEECC-CCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG---GGTTBEEEECC------SCHHHHHHH
T ss_pred CCCCeee-cCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC---CCCCEEEEEec------CCHHHHHHH
Confidence 7 88774 344456667676531 45777787666 489999988765532 12478999984 347899999
Q ss_pred HHHHHHHHHH
Q 012104 409 GEFLHRAVTL 418 (471)
Q Consensus 409 ~~~i~~~l~~ 418 (471)
.+.|.++++.
T Consensus 393 ~~~l~~~l~~ 402 (406)
T 1xi9_A 393 MDRFEKFMKE 402 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 74
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=1e-25 Score=226.92 Aligned_cols=323 Identities=14% Similarity=0.103 Sum_probs=216.8
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-cCCC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEPH 121 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al-l~pG 121 (471)
+++++++++...+..... + |+.+ ....+++ +.+++++|.+. .|.++||++|+.+++.++ ++||
T Consensus 15 ~~~~~~~a~~~~l~~~~~-~-----~~~~-~~~~~l~----~~la~~~~~~~-----~i~~~sGt~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQW-W-----RMGG-DEVNSFE----REFAAHHGAAH-----ALAVTNGTHALELALQVMGVGPG 78 (388)
T ss_dssp CCHHHHHHHHHHHHTSCC-B-----TTTC-SHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHHHHHHHTTCCTT
T ss_pred CCHHHHHHHHHHHHcCCe-e-----ecCC-HHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCCc
Confidence 458999999887754210 1 2222 3334444 67888999863 466789999999999999 9999
Q ss_pred CEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHH
Q 012104 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARF 201 (471)
Q Consensus 122 D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i 201 (471)
|+|++++++|.++.. .+...| .+++.++++++++.+|+++|++++. .++++|+ ..|++|...|+++|
T Consensus 79 d~Vi~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~~~~~~d~~~l~~~i~-~~~~~v~-~~n~tG~~~~l~~i 145 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQ---------AAQRLG--AVTVPVDVDAATYNLDPEAVAAAVT-PRTKVIM-PVHMAGLMADMDAL 145 (388)
T ss_dssp CEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTCCBCHHHHHHHCC-TTEEEEC-CBCGGGCCCCHHHH
T ss_pred CEEEECCCccHHHHH---------HHHHcC--CEEEEEecCCCcCCCCHHHHHHhcC-cCceEEE-EeCCccCcCCHHHH
Confidence 999999999876532 122334 4666777776668899999999986 3678877 56789999999999
Q ss_pred HHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccch--Hhhh
Q 012104 202 RAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF--EDKI 279 (471)
Q Consensus 202 ~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l--~~~i 279 (471)
.++|+++|++|++|++|+.|....|.....+..+++.++|.||+++|++||+++++++ .+ .+.+
T Consensus 146 ~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~--------------~~~~~~~~ 211 (388)
T 1b9h_A 146 AKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDG--------------ETEKYETA 211 (388)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTT--------------CHHHHHHH
T ss_pred HHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCH--------------HHHHHHHH
Confidence 9999999999999999987765543321112223455555669998999999999874 24 3333
Q ss_pred hhcC----------CCC-CCCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeC-----
Q 012104 280 NFAV----------FPS-LQGG---PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTG----- 339 (471)
Q Consensus 280 ~~~~----------~~~-~~g~---p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~----- 339 (471)
.... +.. ..|+ ++....+++..++ ..+++..++..++++++.+.|++. |+.+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 286 (388)
T 1b9h_A 212 FLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQL-----ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRAD 286 (388)
T ss_dssp HHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHH-----TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCC
T ss_pred HHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCC
Confidence 2111 000 0122 2222222221111 135667778888999999999987 8887532
Q ss_pred CCCCeeEEEEccCCC-CCHHHHHHHHhhcCeEeccCCcCCCCCC------------------C------CCCeeEEecCC
Q 012104 340 GTENHLVLWDLRPLG-LTGNKVEKLCDLCNITVNKNAVFGDSSA------------------L------APGGVRIGTPA 394 (471)
Q Consensus 340 ~~~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~------------------~------~~~~iRig~~~ 394 (471)
....+++++.+...+ .+..++.+.|.++||.++.++.|....+ + ..+.|||++..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 366 (388)
T 1b9h_A 287 RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRV 366 (388)
T ss_dssp BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGG
T ss_pred ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCC
Confidence 123567888875321 2466788888889999987654321100 0 01368998754
Q ss_pred CCCcCC-CHHHHHHHHHHHHHHHH
Q 012104 395 MTSRGL-LEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 395 ~t~~g~-~~~d~~~l~~~i~~~l~ 417 (471)
. + +++|++++++.|.++++
T Consensus 367 ~----~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 367 L----LAGEPELHATAEIIADAVA 386 (388)
T ss_dssp G----GSCHHHHHHHHHHHHHHHH
T ss_pred C----CCCHHHHHHHHHHHHHHHh
Confidence 3 4 58999999999988765
No 75
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.94 E-value=5.2e-25 Score=223.16 Aligned_cols=373 Identities=16% Similarity=0.062 Sum_probs=233.3
Q ss_pred CCcccccccccccccChHHHHHHHHHHH--hcc--CCeeEecCCC----CCcHHHHHHHhhhhhccCCCCCCCCCCCCcc
Q 012104 1 MDPVNEWGNSSLETVDPEIHDLIEKEKR--RQC--RGIELIASEN----FTSFAVIEALGSALTNKYSEGMPGNRYYGGN 72 (471)
Q Consensus 1 ~~~~~~~~~~~~~~~d~~~~~~~~~e~~--~~~--~~i~li~s~n----~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~ 72 (471)
|++... +.+.+..+.+.....+.+... ++. ..|+|..+.. +.++.+.+++...+.+... ... |+..
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~~ 74 (407)
T 2zc0_A 1 MDYTKY-LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTPA 74 (407)
T ss_dssp CCGGGG-SCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCCT
T ss_pred Ccchhh-hhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCCC
Confidence 553322 444555555443333322222 123 5688865432 2467888888777644210 001 2222
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccc
Q 012104 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (471)
Q Consensus 73 ~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~ 152 (471)
....++++...+++.+.+|.+.+.. ..+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...|
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~~-~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g- 143 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSPE-NIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLL---------AFEQLG- 143 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTT-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcc-eEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHH---------HHHHcC-
Confidence 2234555544555656568432111 22345555789999999999999999999998876531 122334
Q ss_pred eeEEEeeeecCCCCCCCHHHHHHHhh----h-CCCcEEE-E-c-CCCCCccccHH---HHHHHHHHhCCEEEEeccccch
Q 012104 153 YFESLPYKVNSSTGYIDYDKLEEKAL----D-FRPKLII-C-G-GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 153 ~~~~~~~~v~~~~~~iD~~~le~~~~----~-~~pklIi-~-~-~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~g 221 (471)
.+++.+++++ ++ +|+++|++.+. + .++++|+ + + +||+|...|.+ +|+++|+++|++|++|++|. +
T Consensus 144 -~~~~~v~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~ 219 (407)
T 2zc0_A 144 -AKIEGVPVDN-DG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYN-F 219 (407)
T ss_dssp -CEEEEEEEET-TE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-T
T ss_pred -CEEEEcccCC-CC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCc-c
Confidence 3555566664 33 99999999987 4 3688874 3 3 68899999887 88899999999999999997 4
Q ss_pred hhccccCCCCCC-----CccEEEeCCCCcCC-CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHH
Q 012104 222 LVAAQEAANPFE-----YCHIVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQ 295 (471)
Q Consensus 222 lv~~g~~~~p~~-----~aDiv~~s~~K~l~-GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~ 295 (471)
+...|..+.++. ..+++++|+||++. |.|+|++++++ ++.+.+.....+...+++. ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~ 283 (407)
T 2zc0_A 220 MRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWIIAEG---------------EILKKVLMQKQPIDFCAPA-IS 283 (407)
T ss_dssp SBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEECCH---------------HHHHHHHHHHTTTTSSSCH-HH
T ss_pred cccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEecCH---------------HHHHHHHHHHHhhcCCCCH-HH
Confidence 444333222221 23488999999975 45889999876 5666665433333233323 33
Q ss_pred HHHHHHHHHHhc-c-HHHHHHHHHHHHHHHHHHHHHHcC--CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc-CeE
Q 012104 296 IGALAVALKQAS-T-PAFKAYAKQVKANAVALGNYLTGK--GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC-NIT 370 (471)
Q Consensus 296 iaa~a~al~~~~-~-~~~~~~~~~~~~na~~l~~~L~~~--g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~ 370 (471)
.++...+++... . ..+++..+++.++++.+.+.|++. |+.++. +..++++|+++.. +++..++.+.|.+. ||.
T Consensus 284 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~l~~~l~~~~gi~ 361 (407)
T 2zc0_A 284 QYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFFLPE-GADGISFANELMEREGVV 361 (407)
T ss_dssp HHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEECST-TCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEEcCC-CCCHHHHHHHHHHhCCeE
Confidence 334444454321 1 234566677788888999999873 676643 3445678888853 56788887777766 999
Q ss_pred eccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 371 VNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 371 v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+.++..++... ...+++||+++.. ++++++++.+.|.++++.
T Consensus 362 v~~g~~~~~~~-~~~~~iRis~~~~-----~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 362 VVPGKPFYTDE-SGKNAIRLNFSRP-----SKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp CBCSGGGCSSS-CCTTEEEEECSSS-----CTTHHHHHHHHHHHHHHH
T ss_pred EECchhccCCC-CCCCeEEEEeCCC-----CHHHHHHHHHHHHHHHHH
Confidence 98876443211 1357899998543 368999999988887754
No 76
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.94 E-value=3.9e-25 Score=223.36 Aligned_cols=338 Identities=12% Similarity=0.019 Sum_probs=222.3
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccC---CCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCC
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKY---SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS 105 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~---~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~s 105 (471)
++.|+|..+... .++.+.+++...+.+.. ..+|+.. .....+.+...+++.+.+|.+.+.- ..+.+++
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~-~i~~~~g 107 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSA------QGDVETRAAIAEFLNNTHGTHFNAD-NLYMTMG 107 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESS
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCC------CCcHHHHHHHHHHHHHHhCCCCChH-HEEEccC
Confidence 467888766543 46899999887775421 1133211 1123444444567777777432211 2344666
Q ss_pred hHHHHHHHHHHhcCCC-CEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcE
Q 012104 106 GSPANFAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 106 Gt~A~~~~~~all~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pkl 184 (471)
|++|+.+++.++++|| |+|++.+|.|.++.. .+...| .+++.++++++++.+|++++++.+.. ++++
T Consensus 108 ~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~---------~~~~~g--~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~ 175 (398)
T 3ele_A 108 AAASLSICFRALTSDAYDEFITIAPYFPEYKV---------FVNAAG--ARLVEVPADTEHFQIDFDALEERINA-HTRG 175 (398)
T ss_dssp HHHHHHHHHHHHCCSTTCEEEEESSCCTHHHH---------HHHHTT--CEEEEECCCTTTSSCCHHHHHHTCCT-TEEE
T ss_pred HHHHHHHHHHHHcCCCCCEEEEeCCCchhhHH---------HHHHcC--CEEEEEecCCcCCcCCHHHHHHHhCc-CCCE
Confidence 7889999999999999 999999999876532 122334 45566666756679999999998864 7888
Q ss_pred EEEc--CCCCCccccH---HHHHHHHHH------hCCEEEEeccccchhhcccc-CCCCCC--CccEEEeCCCCcC--CC
Q 012104 185 IICG--GSAYPRDWDY---ARFRAVADK------CGALLLCDMAHISGLVAAQE-AANPFE--YCHIVTTTTHKSL--RG 248 (471)
Q Consensus 185 Ii~~--~s~~g~~~d~---~~i~~ia~~------~g~~livD~a~~~glv~~g~-~~~p~~--~aDiv~~s~~K~l--~G 248 (471)
|++. +||+|..++. ++|+++|++ +|++||+|++|. ++.+.|. .+.... ..+++++|+||++ +|
T Consensus 176 v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 254 (398)
T 3ele_A 176 VIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYR-EIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPG 254 (398)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTT-TCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTT
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEecccc-ccccCCCCcCChHhhcCCeEEEEehhhcCCCcc
Confidence 8754 6889999984 566688998 999999999997 5555442 222222 3458999999995 78
Q ss_pred CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcC-CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 249 prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~-~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
.|.|++++++++... ..+...+.... ..+. .+++....++.+.++... ...+++.++++++.+
T Consensus 255 ~r~G~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~l~~ 318 (398)
T 3ele_A 255 ERIGYVLVPDEVYDK---------AELYAAVCGAGRALGY-VCAPSLFQKMIVKCQGAT------GDINAYKENRDLLYE 318 (398)
T ss_dssp TCCEEEECCTTSTTH---------HHHHHHHHHHHHHTTC-CCSCHHHHHHHTTCTTCC------CCHHHHHHHHHHHHH
T ss_pred ceeEEEEEcchhhhH---------HHHHHHHHHHhhhccc-cCCCHHHHHHHHHHhcCH------HHHHHHHHHHHHHHH
Confidence 889999998752100 01222221110 1111 122222222222222211 134567778888999
Q ss_pred HHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHH
Q 012104 328 YLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQ 407 (471)
Q Consensus 328 ~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~ 407 (471)
.|++.|+++.. +..+.++|+++.. .+..++.+.|.++||.+.++..++. ++++||++. .+++++++
T Consensus 319 ~L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~-----~~~iRis~~------~~~e~i~~ 384 (398)
T 3ele_A 319 GLTRIGYHCFK-PDGAFYMFVKALE--DDSNAFCEKAKEEDVLIVAADGFGC-----PGWVRISYC------VDREMIKH 384 (398)
T ss_dssp HHHHHTCCEEC-CSBSSEEEEECSS--SCHHHHHHHHHTTTEECEESGGGTC-----TTEEEEECC------SCHHHHHH
T ss_pred HHHHcCCeecC-CCeeEEEEEEcCC--CCHHHHHHHHHHCCEEEeCccccCC-----CCeEEEEec------CCHHHHHH
Confidence 99888888753 4556668888753 3678888889999999998765542 479999973 24789999
Q ss_pred HHHHHHHHHHH
Q 012104 408 IGEFLHRAVTL 418 (471)
Q Consensus 408 l~~~i~~~l~~ 418 (471)
..+.|.++++.
T Consensus 385 ~l~~l~~~l~~ 395 (398)
T 3ele_A 385 SMPAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887764
No 77
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.94 E-value=1.1e-24 Score=218.05 Aligned_cols=320 Identities=15% Similarity=0.138 Sum_probs=222.8
Q ss_pred CeeEecCCCC--CcHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCC-hH
Q 012104 33 GIELIASENF--TSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS-GS 107 (471)
Q Consensus 33 ~i~li~s~n~--~s~~v~~a~~~~l~~~~--~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~s-Gt 107 (471)
.|+|..+++. .+|.+++++...+.+.. ..+|+. ... .++++...+++++.+|...+. .+|..++ ++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~~-~~l~~~la~~l~~~~g~~~~~--~~v~~~~G~~ 102 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RDA-VELRDELAAYITKQTGVAVTR--DNLWAANGSN 102 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TTC-HHHHHHHHHHHHHHHCCCCCG--GGEEEESHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------ccH-HHHHHHHHHhhhhcccCCCCh--HhEEECCChH
Confidence 3788877764 47899999988775421 122322 112 355554455666665543211 1344445 45
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++.+ +++.+|++++++.+.+.++++|++
T Consensus 103 ~al~~~~~~l~~~gd~Vl~~~~~y~~~~~---------~~~~~g~--~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~v~~ 170 (369)
T 3cq5_A 103 EILQQLLQAFGGPGRTALGFQPSYSMHPI---------LAKGTHT--EFIAVSRG-ADFRIDMDVALEEIRAKQPDIVFV 170 (369)
T ss_dssp HHHHHHHHHHCSTTCEEEEEESSCTHHHH---------HHHHTTC--EEEEEECC-TTSSCCHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHH---------HHHHcCC--EEEEecCC-cCCCCCHHHHHHHhhccCCCEEEE
Confidence 78999999999999999999999876532 1223343 44555555 456899999999987547888875
Q ss_pred c--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C--C-ccEEEeCCCCcC--CCCCeEEEEee
Q 012104 188 G--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E--Y-CHIVTTTTHKSL--RGPRAGMIFYR 257 (471)
Q Consensus 188 ~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~--~-aDiv~~s~~K~l--~GprgG~i~~~ 257 (471)
. +||+|...|.+++.++|+.+++++++|++|. ++... ++.+ + . .+++++|+||++ +|.|.|+++++
T Consensus 171 ~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~-~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYA-EFSPS---PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTG-GGCCS---CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCch-hhcCC---cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 4 6789999999999999999999999999997 33321 1111 2 2 458999999996 57788999998
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEe
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~ 337 (471)
+ ++.+.+.....+. +++....++...+++. ..++++..+++.++++.+.+.|++.|+++.
T Consensus 247 ~---------------~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 306 (369)
T 3cq5_A 247 P---------------AFIDAVMLVRLPY---HLSALSQAAAIVALRH--SADTLGTVEKLSVERVRVAARLEELGYAVV 306 (369)
T ss_dssp T---------------HHHHHHHTTSCTT---CSCHHHHHHHHHHHHT--HHHHHTHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred H---------------HHHHHHHHcCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCEEC
Confidence 6 5666665443322 2444444555556654 234677788888999999999988888885
Q ss_pred eCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 338 TGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 338 ~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+ ...+++++++. .+..++.+.|.++||.+.++ + .++++||+++ +++|++++.+.|.+++.
T Consensus 307 -~-~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~~---~-----~~~~iRis~~-------~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 307 -P-SESNFVFFGDF---SDQHAAWQAFLDRGVLIRDV---G-----IAGHLRTTIG-------VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -C-CSSSEEEEECC---SSHHHHHHHHHHTTEECBCC---S-----CTTEEEEECC-------CHHHHHHHHHHHHHHHT
T ss_pred -C-CCCeEEEEECC---CCHHHHHHHHHHCCEEEEEC---C-----CCCeEEEEeC-------CHHHHHHHHHHHHHHHh
Confidence 3 34557788774 46778888889999999765 1 1468999984 37899999999988764
No 78
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.94 E-value=7.3e-26 Score=228.24 Aligned_cols=329 Identities=15% Similarity=0.104 Sum_probs=222.4
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~ 112 (471)
.|+|.. ...++.+++++...+.+.+. +. ......+ ++.+++++|.+. .+.++||++|+.+
T Consensus 10 ~i~~~~--p~~~~~~~~a~~~~~~~~~~--------~~-~~~~~~l----~~~la~~~~~~~-----~~~~~~gt~al~~ 69 (393)
T 1mdo_A 10 FLPFSR--PAMGAEELAAVKTVLDSGWI--------TT-GPKNQEL----EAAFCRLTGNQY-----AVAVSSATAGMHI 69 (393)
T ss_dssp CBCSCC--CCCCHHHHHHHHHHHHHTCC--------SS-SHHHHHH----HHHHHHHHCCSE-----EEEESCHHHHHHH
T ss_pred ccccCC--CCCCHHHHHHHHHHHhcCCc--------CC-ChHHHHH----HHHHHHHhCCCc-----EEEecChHHHHHH
Confidence 455543 34678899998887755321 11 1333344 367888999863 3667899999999
Q ss_pred HHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCC
Q 012104 113 AYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (471)
Q Consensus 113 ~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~ 191 (471)
++.++ ++|||+|++.+++|.++.. .+...| .+++.++++++++.+|++++++.+.+ ++++|++. ++
T Consensus 70 ~~~~~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~-~~ 136 (393)
T 1mdo_A 70 ALMALGIGEGDEVITPSMTWVSTLN---------MIVLLG--ANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV-HY 136 (393)
T ss_dssp HHHHTTCCTTCEEEEESSSCHHHHH---------HHHHTT--CEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB-CG
T ss_pred HHHHcCCCCCCEEEeCCCccHhHHH---------HHHHCC--CEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe-CC
Confidence 99999 9999999999998876531 122334 45666677765678999999999864 78888765 47
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCC--CcCCCCCeEEEEeeCCCCCCCCCCCC
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTH--KSLRGPRAGMIFYRKGPKPPKKGQPE 269 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~--K~l~GprgG~i~~~~~~~~~~~~~~~ 269 (471)
+|...|+++|.++|+++|+++++|++|+.|+...+.. +...|++++|+| |+++|+++|+++++++
T Consensus 137 ~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~---~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~---------- 203 (393)
T 1mdo_A 137 AGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRH---IGARGTAIFSFHAIKNITCAEGGIVVTDNP---------- 203 (393)
T ss_dssp GGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEE---TTSSSEEEEECCTTSSSCSSSCEEEEESCH----------
T ss_pred CCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCee---cCCCCeEEEeCCCCCccccccceEEEeCCH----------
Confidence 8999999999999999999999999998775543321 111799999999 9998889999998742
Q ss_pred CcccchHhhhhhcCCCC--------------------CCCC-C-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 270 GAVYDFEDKINFAVFPS--------------------LQGG-P-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 270 i~~~~l~~~i~~~~~~~--------------------~~g~-p-~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
++.+++......+ ..|. . .....++++ +... ..+++..++..++++++.+
T Consensus 204 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~--~~~l--~~~~~~~~~~~~~~~~l~~ 275 (393)
T 1mdo_A 204 ----QFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIA--LAQL--QKLDALNARRAAIAAQYHQ 275 (393)
T ss_dssp ----HHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHH--HHHH--HTHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3333332211100 0111 0 111222222 2221 2456677777889999999
Q ss_pred HHHcCCceEeeCC-----CCCeeEEEEccCC--CCCHHHHHHHHhhcCeEeccCCcCCC----------CCCC------C
Q 012104 328 YLTGKGYSLVTGG-----TENHLVLWDLRPL--GLTGNKVEKLCDLCNITVNKNAVFGD----------SSAL------A 384 (471)
Q Consensus 328 ~L~~~g~~i~~~~-----~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~v~~~~~p~~----------~~~~------~ 384 (471)
.|.+.++++...+ ...+++++.+... +.+..++.+.|.+.||.++++..|.. .... .
T Consensus 276 ~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T 1mdo_A 276 AMADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNS 355 (393)
T ss_dssp HHHTSSCEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHH
T ss_pred HHhcCCcccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHH
Confidence 9998887764222 2345678877521 45788899999999999988654410 0000 1
Q ss_pred CCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 385 PGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 385 ~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+.+||++... ++++|++++++.|.++++..
T Consensus 356 ~~~lRi~~~~~----~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 356 ERICSLPLFPD----MTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp TTEEEECCCTT----CCHHHHHHHHHHHHHHHC--
T ss_pred hCEEEecCCCC----CCHHHHHHHHHHHHHHHhcC
Confidence 24799997543 45899999999999877653
No 79
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=5.5e-26 Score=228.60 Aligned_cols=320 Identities=10% Similarity=0.052 Sum_probs=210.6
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceec
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~ 150 (471)
+.++.+.+++ +++++++++|++. ..+.+.|||.|+.+++. +++|||+|+++++.|.++. +. ......
T Consensus 30 ~~~~~~~~~~-~~~~l~~~~~~~~----~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~---~~----~~~~~~ 96 (379)
T 3ke3_A 30 SKAFQEVMND-LLSNLKTVYNAEA----AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYR---WT----QILEKG 96 (379)
T ss_dssp SHHHHHHHHH-HHHHHHHHHTCSE----EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHH---HH----HHHHHH
T ss_pred CHHHHHHHHH-HHHHHHHHhCCCC----EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHH---HH----HHHHHh
Confidence 4556555554 5788999999873 45667899999999875 4579999999987654321 00 011122
Q ss_pred cceeEEEeeeecCC--------CCCCCHHHHHHHhhhCCCcEEEEc--CCCCCcccc---HHHHHHHHHHhCCEEEEecc
Q 012104 151 SIYFESLPYKVNSS--------TGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWD---YARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 151 g~~~~~~~~~v~~~--------~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d---~~~i~~ia~~~g~~livD~a 217 (471)
|..++++.++++.. .+.+|++++++.+.+.++++|++. .|++|...| +++|+++|+++|+++++|++
T Consensus 97 g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~ 176 (379)
T 3ke3_A 97 KFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI 176 (379)
T ss_dssp CCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 32234444443321 036899999999975578988765 578899999 99999999999999999999
Q ss_pred ccchhhccccCCCCCC--CccEEEeCCCCcCCCCCe-EEEEeeCCCCC-CCC-CCCCCcccchHh------hhhhcCCCC
Q 012104 218 HISGLVAAQEAANPFE--YCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKK-GQPEGAVYDFED------KINFAVFPS 286 (471)
Q Consensus 218 ~~~glv~~g~~~~p~~--~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~-~~~-~~~~i~~~~l~~------~i~~~~~~~ 286 (471)
|+ |. .+..+. ++|++++|+||+|.||.| |++++++++.. ..+ ..... .+++.. ...... ..
T Consensus 177 ~~-g~-----~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~-~~ 248 (379)
T 3ke3_A 177 AS-GC-----VWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCF-SLDLKQWLTIMRAYENGG-HA 248 (379)
T ss_dssp TC-TT-----CCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCS-TTCHHHHHHHHHHHHTTS-CC
T ss_pred cc-CC-----ccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCce-eecHHHHHHHHHhhhccC-CC
Confidence 86 52 222333 689999999999988875 88877763100 000 00000 001100 000110 11
Q ss_pred CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCC-CCe-eEEEEccCCCCCHHHHHHHH
Q 012104 287 LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT-ENH-LVLWDLRPLGLTGNKVEKLC 364 (471)
Q Consensus 287 ~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~-~~~-~~~v~~~~~~~~~~~~~~~L 364 (471)
+.++++...++++..+++.+...++++..++..+++++|++.|++.|++++.... ... +..+... +. .....+.|
T Consensus 249 ~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~~-~~~~~~~L 325 (379)
T 3ke3_A 249 YHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTE--RD-DMHKGSAF 325 (379)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECS--CH-HHHSSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccC--Cc-chHHHHHH
Confidence 2357888888888889888766567888899999999999999999998764321 122 3323221 11 11226778
Q ss_pred hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 365 DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 365 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.++||.+.++..|....+...+.+||+++..+ +++|++++.+.|.++++.
T Consensus 326 ~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~----t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 326 AEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLD----KLTDIDGTVERFEKALDE 375 (379)
T ss_dssp HHTTCCCEECCCCSSCCCTTCCEEEEECCSHH----HHTCHHHHHHHHHHHHHH
T ss_pred HHCCeEEeCCccccccccCcCCEEEEeCCcCC----CHHHHHHHHHHHHHHHHH
Confidence 88999998875332112334679999986554 478999999999887764
No 80
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.94 E-value=1.2e-25 Score=228.03 Aligned_cols=360 Identities=14% Similarity=0.050 Sum_probs=233.6
Q ss_pred cccccChHHHHHHHHHHHhccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 012104 11 SLETVDPEIHDLIEKEKRRQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQ 88 (471)
Q Consensus 11 ~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~ 88 (471)
.+..+.++.+..+.+ ...+.+.|+|..+++. .++.|++++...+.+....+|+... ....+++...+++.+
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~------g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 4 RIEGLDSNVWVEFTK-LAADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGF------GHPALVKALSCLYGK 76 (410)
T ss_dssp GGTTCCCCHHHHTTT-TTTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTT------CCHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHH-HhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCC------ChHHHHHHHHHHHHH
Confidence 344455555444432 2234567888777653 5789999998877543223443321 123444444566666
Q ss_pred hcCCCCCC-CceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC----
Q 012104 89 TFHLDPTQ-WGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS---- 163 (471)
Q Consensus 89 lfg~~~~~-~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~---- 163 (471)
.+|.+... . -.+.+++|++|+..++.++++|||+|++..|.|.++.. .+...|. +++.+++++
T Consensus 77 ~~~~~~~~~~-~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~ 144 (410)
T 3e2y_A 77 IYQRQIDPNE-EILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEP---------MVRMAGA--VPVFIPLRSKPTD 144 (410)
T ss_dssp HHTSCCCTTT-SEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEECEECCCC
T ss_pred HhCCCCCCCC-CEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHH---------HHHHcCC--EEEEEeccccccc
Confidence 66654321 1 13445566789999999999999999999999876542 1223343 334444331
Q ss_pred ------CCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccc---cHHHHHHHHHHhCCEEEEeccccchhhccccCCCCC
Q 012104 164 ------STGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF 232 (471)
Q Consensus 164 ------~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~---d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~ 232 (471)
.++.+|++++++.+. .++++|++ + +||+|..+ ++++|+++|+++|+++|+|++|. ++.+.|..+.++
T Consensus 145 g~~~~~~~~~~d~~~l~~~~~-~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~ 222 (410)
T 3e2y_A 145 GMKWTSSDWTFDPRELESKFS-SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE-WLVYTGHTHVKI 222 (410)
T ss_dssp SSCCBGGGEECCHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBCTTCCCCCG
T ss_pred cccccccCCcCCHHHHHhhcC-CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh-hcccCCCCCCCH
Confidence 345689999999886 36887774 4 67899885 67888899999999999999997 665555333222
Q ss_pred C------CccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHH
Q 012104 233 E------YCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (471)
Q Consensus 233 ~------~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~ 304 (471)
. ..++++.|+||++ +|.|.|++++++ ++.+.+......... +++....++.+.++.
T Consensus 223 ~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~ 286 (410)
T 3e2y_A 223 ATLPGMWERTITIGSAGKTFSVTGWKLGWSIGPA---------------HLIKHLQTVQQNSFY-TCATPLQAALAEAFW 286 (410)
T ss_dssp GGSTTCGGGEEEEEEHHHHSSCGGGCCEEEECCH---------------HHHHHHHHHHHTTTC-CCCHHHHHHHHHHHH
T ss_pred HHcCCccCeEEEEecchhhcCCCCceEEEEEECH---------------HHHHHHHHHHHhhcc-CCChHHHHHHHHHHH
Confidence 2 2238899999996 678889999877 455544433222222 234444445555565
Q ss_pred H------hccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCC--CCCH--------HHH-HHHHhhc
Q 012104 305 Q------ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--GLTG--------NKV-EKLCDLC 367 (471)
Q Consensus 305 ~------~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~--~~~~--------~~~-~~~L~~~ 367 (471)
. .....+++..+++.++++.+.+.|++.|+.+.. +..++++|+++... +++. .++ ..+|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 365 (410)
T 3e2y_A 287 IDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIV-PDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHK 365 (410)
T ss_dssp HHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHc
Confidence 3 123356778888889999999999999998754 45667888887531 2222 244 5577889
Q ss_pred CeEeccCCcCCCCC--CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 368 NITVNKNAVFGDSS--ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 368 gI~v~~~~~p~~~~--~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
||.+.++..++... +...+.+||++.. +++++++..+.|.+
T Consensus 366 gv~v~~g~~f~~~~~~~~~~~~iRis~~~------~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 366 KLTAIPVSAFCDSKSKPHFEKLVRFCFIK------KDSTLDAAEEIFRA 408 (410)
T ss_dssp SEECEEGGGGSCTTTHHHHTTEEEEECCC------CHHHHHHHHHHHHT
T ss_pred CEEEeCchhhCCCCCCCCCCCEEEEEEcC------CHHHHHHHHHHHHh
Confidence 99999876554211 1235799999732 57899988887754
No 81
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.94 E-value=3.1e-24 Score=220.94 Aligned_cols=364 Identities=12% Similarity=0.026 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHhccC-CeeEecC-CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCC
Q 012104 17 PEIHDLIEKEKRRQCR-GIELIAS-ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDP 94 (471)
Q Consensus 17 ~~~~~~~~~e~~~~~~-~i~li~s-~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~ 94 (471)
+++++.+.+....... ..++-.. ..+.+|.+.+++.+.+..... ++ .......++|+.+++++++++|++.
T Consensus 26 ~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~e~~~~a~~~~~~-~~------~~~~~~~~l~~~~~~~la~l~g~~~ 98 (452)
T 2dgk_A 26 DVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWI-DK------EEYPQSAAIDLRCVNMVADLWHAPA 98 (452)
T ss_dssp HHHHHHHHHHGGGSCCCTTBCSCCSCCCCCHHHHHHHHHTTTCBTT-CT------TTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCCCCccCCCCeeCCCchHHHHHHHHHHhccCCC-Ch------hhChhHHHHHHHHHHHHHHHhCCCc
Confidence 4677777765532211 1222111 135678899998776643211 11 1123456778888899999999986
Q ss_pred CC--CceeeecCChHHHHHHHHHHhcC--------CC-----CEEEEeCCCCCCcccccccccCCccceeccceeEEEee
Q 012104 95 TQ--WGVNVQPYSGSPANFAAYTAVLE--------PH-----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPY 159 (471)
Q Consensus 95 ~~--~~~~v~~~sGt~A~~~~~~all~--------pG-----D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~ 159 (471)
+. +...+.+++||+||..++.++.. +| |+|++++ .|..+. +.+...|. +++.+
T Consensus 99 ~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~---------~~~~~~G~--~v~~v 166 (452)
T 2dgk_A 99 PKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH---------KFARYWDV--ELREI 166 (452)
T ss_dssp CTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH---------HHHHHTTC--EEEEC
T ss_pred ccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH---------HHHHHcCc--eEEEE
Confidence 43 11245677889999999888754 66 5888877 543221 11223443 56666
Q ss_pred eecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHh------CCEEEEeccccchhh--ccccCC
Q 012104 160 KVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKC------GALLLCDMAHISGLV--AAQEAA 229 (471)
Q Consensus 160 ~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~------g~~livD~a~~~glv--~~g~~~ 229 (471)
+++++++.+|+++|++.+.+ +|++|++. .|++|...|+++|+++|+++ |+++++|++|+.+.. ..+..+
T Consensus 167 ~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~ 245 (452)
T 2dgk_A 167 PMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV 245 (452)
T ss_dssp CCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC
T ss_pred ecCCCCCeECHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch
Confidence 66644689999999999974 68877744 67899999999999999996 999999999984432 122222
Q ss_pred CC--CCCccEEEeCCCCcC-CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhh-cCCC-------CCCCCCcHHHHHH
Q 012104 230 NP--FEYCHIVTTTTHKSL-RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF-AVFP-------SLQGGPHNHQIGA 298 (471)
Q Consensus 230 ~p--~~~aDiv~~s~~K~l-~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~-~~~~-------~~~g~p~~~~iaa 298 (471)
.. +.++|++++|+||++ .++++|+++++++. .+.+.+.. ..+. +..++......++
T Consensus 246 ~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 312 (452)
T 2dgk_A 246 WDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEE-------------ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIA 312 (452)
T ss_dssp CSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGG-------------GSCGGGCEEECCTTCCEEECCSCCSCBCHHHHH
T ss_pred hhcCCCCCcEEEECcccccCCCCCeEEEEEcCHH-------------HHHHHhccCccccCCCCCCcccCCCChhHHHHH
Confidence 22 337899999999996 45577999997631 01111110 0010 1223333334445
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCC---CCCeeEEEEccCC---CCCHHHHHHHHhhcCeEe
Q 012104 299 LAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGG---TENHLVLWDLRPL---GLTGNKVEKLCDLCNITV 371 (471)
Q Consensus 299 ~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~---~~~~~~~v~~~~~---~~~~~~~~~~L~~~gI~v 371 (471)
+..++..+...++++..++..++++++.+.|++. |++++.++ ...+++.+.+.+. .++..++.+.|.+.||.+
T Consensus 313 ~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v 392 (452)
T 2dgk_A 313 QYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQV 392 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCee
Confidence 5556655545678888999999999999999988 58887532 2345666666432 246678888998999976
Q ss_pred ccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 372 NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 372 ~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.....|... .....+||++...+ +++|++++.+.|.+++...
T Consensus 393 ~~~~~~~~~--~~~~~lRis~~~~~----t~e~id~li~~l~~~~~~~ 434 (452)
T 2dgk_A 393 PAFTLGGEA--TDIVVMRIMCRRGF----EMDFAELLLEDYKASLKYL 434 (452)
T ss_dssp CEEECSTTC--TTCEEEEEECCTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred eeeeCCccc--CCeEEEEEEecCCC----CHHHHHHHHHHHHHHHHHH
Confidence 543223211 12458999985443 4799999999998887643
No 82
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.94 E-value=3.1e-25 Score=223.84 Aligned_cols=353 Identities=12% Similarity=0.042 Sum_probs=234.1
Q ss_pred cccChHHHHHHHHHHHh-----ccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHH
Q 012104 13 ETVDPEIHDLIEKEKRR-----QCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSR 85 (471)
Q Consensus 13 ~~~d~~~~~~~~~e~~~-----~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~ 85 (471)
..+.+.....+.+..++ .++.|+|..+++. .+|.|++++...+... .+|+.. .....+++...++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~------~g~~~lr~~la~~ 78 (396)
T 3jtx_A 7 KQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYPLT------AGLPELRQACANW 78 (396)
T ss_dssp HHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCCCT------TCCHHHHHHHHHH
T ss_pred ccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCCCC------CCcHHHHHHHHHH
Confidence 33444444444433332 2467888777654 4789999998776422 234332 1123444445567
Q ss_pred HHHhcCCC---CCCCceeeecCChHHHHHHHHHHhcCCC-----CEEEEeCCCCCCcccccccccCCccceeccceeEEE
Q 012104 86 ALQTFHLD---PTQWGVNVQPYSGSPANFAAYTAVLEPH-----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESL 157 (471)
Q Consensus 86 ~~~lfg~~---~~~~~~~v~~~sGt~A~~~~~~all~pG-----D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~ 157 (471)
+.+.+|.+ .+.. .+.+++|++|+.+++.++++|| |+|++.+|.|.++.. .+...| .+++
T Consensus 79 l~~~~g~~~~~~~~~--i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~---------~~~~~g--~~~~ 145 (396)
T 3jtx_A 79 LKRRYDGLTVDADNE--ILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG---------ATLLGG--GEIH 145 (396)
T ss_dssp HHHHTTTCCCCTTTS--EEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH---------HHHHTT--CEEE
T ss_pred HHHhcCCCCCCCCCe--EEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH---------HHHHcC--CEEE
Confidence 77778854 3201 2446667789999999999997 799999998876532 122334 3555
Q ss_pred eeeecCCCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccHHH---HHHHHHHhCCEEEEeccccchhhccccCCCCC
Q 012104 158 PYKVNSSTGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDYAR---FRAVADKCGALLLCDMAHISGLVAAQEAANPF 232 (471)
Q Consensus 158 ~~~v~~~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~~~---i~~ia~~~g~~livD~a~~~glv~~g~~~~p~ 232 (471)
.++++.+++.+|++++++.+.+ ++++|++ + +||+|..++.++ |+++|+++|++||+|++|. ++...+..+.+.
T Consensus 146 ~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~ 223 (396)
T 3jtx_A 146 FANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYS-EIYFDGNKPLGC 223 (396)
T ss_dssp EEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTT-TCCSTTCCCCCH
T ss_pred EeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCchH
Confidence 5666655667899999998875 7888874 4 788999987765 7789999999999999997 555544222211
Q ss_pred ----------CCccEEEeCCCCc--CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHH
Q 012104 233 ----------EYCHIVTTTTHKS--LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALA 300 (471)
Q Consensus 233 ----------~~aDiv~~s~~K~--l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a 300 (471)
...++++.|+||+ ++|.|.|++++++ ++.+.+....... ..+++...+++..
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~~a~~ 287 (396)
T 3jtx_A 224 LQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSGFVAGDA---------------ELLKNFLLYRTYH-GSAMSIPVQRASI 287 (396)
T ss_dssp HHHHHHTTCCCTTEEEEEESTTTSSCGGGCCEEEEECH---------------HHHHHHHHHHHHH-TCCCCHHHHHHHH
T ss_pred HhhhhhcccccCcEEEEeccccccCCcccceEEEEeCH---------------HHHHHHHHHHhhc-ccCCCHHHHHHHH
Confidence 2356899999996 5788899998876 4555554321111 1234444455555
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCC
Q 012104 301 VALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGD 379 (471)
Q Consensus 301 ~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~ 379 (471)
.++.. ...+++..+++.++.+.+.+.|.+. +.+. .+..++++|+++.. .+..++.+.| +++||.+.++..++.
T Consensus 288 ~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~~~~ 361 (396)
T 3jtx_A 288 AAWDD--EQHVIDNRRLYQEKFERVIPILQQV-FDVK-LPDASFYIWLKVPD--GDDLAFARNLWQKAAIQVLPGRFLAR 361 (396)
T ss_dssp HHHHC--CHHHHHHHHHHHHHHHHHHHHHTTT-SCCC-CCSSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEGGGGCC
T ss_pred HHhCC--HHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCeeEEEEEECCC--CCHHHHHHHHHHHCCEEEeCChHhCC
Confidence 56653 4466788888888999999999875 4442 34556788888864 4667776555 778999998876653
Q ss_pred C---CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 380 S---SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 380 ~---~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. .+...+++||++.. +++++++..+.|.+++
T Consensus 362 ~~~~~~~~~~~iRis~~~------~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 362 DTEQGNPGEGYVRIALVA------DVATCVKAAEDIVSLY 395 (396)
T ss_dssp CCTTCCTTTTEEEEECCS------CHHHHHHHHHHHHHHC
T ss_pred cccccCCCCCeEEEEEcC------CHHHHHHHHHHHHHHh
Confidence 1 12345899999742 4789999888887754
No 83
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.94 E-value=1.2e-25 Score=228.14 Aligned_cols=339 Identities=14% Similarity=0.093 Sum_probs=226.1
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
+.|+|..+++. .+|.+++++...+.+....+|+.. .....+++...+++++.+|.+.+.....+.+++|++|
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAF------HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 46888777754 478999998877633211123221 1123455444566666668752110023446666789
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc-
Q 012104 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG- 188 (471)
Q Consensus 110 ~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~- 188 (471)
+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++++++.+|+++|++.+. .++++|++.
T Consensus 122 l~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~g--~~~~~v~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~ 189 (404)
T 2o1b_A 122 LVAVPTCVINPGDYVLLPDPGYTDYLA---------GVLLAD--GKPVPLNLEPPHYLPDWSKVDSQII-DKTKLIYLTY 189 (404)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCSSHHH---------HHHHTT--CEEEEEECCTTTCCCCGGGSCHHHH-HHEEEEEECS
T ss_pred HHHHHHHhcCCCCEEEEcCCCchhHHH---------HHHHCC--CEEEEeccCcccCcCCHHHHHHhhc-cCceEEEEcC
Confidence 999999999999999999999887642 122334 3555566664445689999999886 368888754
Q ss_pred -CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----CccEEEeCCCCcC--CCCCeEEEEee
Q 012104 189 -GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCHIVTTTTHKSL--RGPRAGMIFYR 257 (471)
Q Consensus 189 -~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aDiv~~s~~K~l--~GprgG~i~~~ 257 (471)
+||+|..++ +++|+++|+++|++||+|++|. ++.+.|..++.+. ..+++++|+||++ +|+|.|+++++
T Consensus 190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~ 268 (404)
T 2o1b_A 190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYG-AFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGN 268 (404)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTT-TCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEEC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccch-hcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecC
Confidence 678998886 5678899999999999999997 4444442222222 2458999999996 67788999887
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEe
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLV 337 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~ 337 (471)
+ ++.+.+........ .+++....++...+++.. ..++++..+++.++++.+.+.|++.|+++.
T Consensus 269 ~---------------~~~~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 331 (404)
T 2o1b_A 269 K---------------DMIQALKKYQTHTN-AGMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFV 331 (404)
T ss_dssp H---------------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred H---------------HHHHHHHHHHhhcc-CCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeec
Confidence 6 45555543221111 233444444555566553 345677788888899999999998888875
Q ss_pred eCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 338 TGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 338 ~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. +..+.++|+++. .+++..++.+.| +++||.+.++..++. ...+++||++.. +++++++..+.|.+++
T Consensus 332 ~-~~~g~~~~~~~~-~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRis~~~------~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 332 H-AKGGIYVWLETP-PGYDSEQFEQFLVQEKSILVAPGKPFGE---NGNRYVRISLAL------DDQKLDEAAIRLTELA 400 (404)
T ss_dssp C-CCBSSEEEEECC-TTCCHHHHHHHHHHHHCEECEESGGGCG---GGTTEEEEECCS------CTTHHHHHHHHHHGGG
T ss_pred C-CCcceEEEEeCC-CCCCHHHHHHHHHHHCCEEEeCchhhCc---CCCCeEEEEEcC------CHHHHHHHHHHHHHHH
Confidence 3 445667888885 356777776655 578999988765432 124789999853 2568888888877665
Q ss_pred H
Q 012104 417 T 417 (471)
Q Consensus 417 ~ 417 (471)
+
T Consensus 401 ~ 401 (404)
T 2o1b_A 401 Y 401 (404)
T ss_dssp G
T ss_pred H
Confidence 4
No 84
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.94 E-value=4.8e-25 Score=222.84 Aligned_cols=359 Identities=13% Similarity=0.029 Sum_probs=229.7
Q ss_pred ccccccccChHHHHHHHHHHHhccCCeeEecCC-CC---CcHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHH
Q 012104 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASE-NF---TSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENL 81 (471)
Q Consensus 8 ~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~-n~---~s~~v~~a~~~~l~~~~--~~g~~~~r~~~g~~~~~~lE~~ 81 (471)
+++......+.....+... .+.+..|+|..+. +. .++.+.+++...+.... ..+|+.. ....+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~~~~~l~-- 80 (397)
T 2zyj_A 10 FGKGAGRIQASTIRELLKL-TQRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPT------EGYAPLR-- 80 (397)
T ss_dssp SCGGGGGCCCCHHHHHHHH-HTSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCT------TCCHHHH--
T ss_pred hhhhhcccCchHHHHHHhh-ccCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCC------CCCHHHH--
Confidence 3444444444433333322 2345678886543 22 46788888877664310 1123221 1112333
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v 161 (471)
+.+++++|++.+ ..+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++.
T Consensus 81 --~~la~~~g~~~~---~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g--~~~~~~~~ 144 (397)
T 2zyj_A 81 --AFVAEWIGVRPE---EVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQ---------AFRLQG--PRFLTVPA 144 (397)
T ss_dssp --HHHHHHHTSCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTC--CEEEEEEE
T ss_pred --HHHHHHhCCChh---hEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHHcC--CEEEecCc
Confidence 566777786543 12334455679999999999999999999998876532 122234 35555666
Q ss_pred cCCCCCCCHHHHHHHhhhCCCcEEE-E-c-CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhhccccCCCCCC--
Q 012104 162 NSSTGYIDYDKLEEKALDFRPKLII-C-G-GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-- 233 (471)
Q Consensus 162 ~~~~~~iD~~~le~~~~~~~pklIi-~-~-~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-- 233 (471)
++ ++ +|++++++.+++.++++|+ + + +||+|..++.+ +|+++|+++|++||+|++|. ++.+.|..+.++.
T Consensus 145 ~~-~~-~d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~ 221 (397)
T 2zyj_A 145 GE-EG-PDLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYR-ELYFGEARLPSLFEL 221 (397)
T ss_dssp ET-TE-ECHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTT-TCBCSSCCCCCHHHH
T ss_pred CC-CC-CCHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcc-cccCCCCCCCchhhh
Confidence 64 33 9999999999765788874 3 3 68899988865 78899999999999999998 4444443222222
Q ss_pred Ccc------EEEeCCCCcCC-CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHh
Q 012104 234 YCH------IVTTTTHKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA 306 (471)
Q Consensus 234 ~aD------iv~~s~~K~l~-GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~ 306 (471)
..| ++++|+||++. |.|.|++++++ ++.+.+.....+...+++ ....++...+++..
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~~~~-~~~~~a~~~~l~~~ 285 (397)
T 2zyj_A 222 AREAGYPGVIYLGSFSKVLSPGLRVAFAVAHP---------------EALQKLVQAKQGADLHTP-MLNQMLVHELLKEG 285 (397)
T ss_dssp HHHHTCCCEEEEEESTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHHSSCC-HHHHHHHHHHHTTT
T ss_pred CcccCCCeEEEEecccccccccceeEEEecCH---------------HHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhC
Confidence 222 88999999975 55789999886 455555432211112232 33333344445432
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcC---CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCC
Q 012104 307 STPAFKAYAKQVKANAVALGNYLTGK---GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSAL 383 (471)
Q Consensus 307 ~~~~~~~~~~~~~~na~~l~~~L~~~---g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~ 383 (471)
....+++..+++.++++.+.+.|++. |+.++. +..++++|+++.. +.+..++.+.|.+.||.+.++..++.. +.
T Consensus 286 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~g~~f~~~-~~ 362 (397)
T 2zyj_A 286 FSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWMELPK-GLSAEGLFRRALEENVAFVPGGPFFAN-GG 362 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEECST-TCCHHHHHHHHHHTTEEEEESGGGCTT-SC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEEcCC-CCCHHHHHHHHHHCCCEEechHHhcCC-CC
Confidence 10345667777888889999999875 788753 3456678888853 567888888888889999987654321 12
Q ss_pred CCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 384 APGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 384 ~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
..+++||+++.. ++++++++.+.|.++++.
T Consensus 363 ~~~~iRis~~~~-----~~~~i~~~~~~l~~~l~~ 392 (397)
T 2zyj_A 363 GENTLRLSYATL-----DREGIAEGVRRLGRALKG 392 (397)
T ss_dssp CTTEEEEECSSS-----CHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCC-----CHHHHHHHHHHHHHHHHH
Confidence 357899998543 478999999999887754
No 85
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.94 E-value=7.4e-25 Score=218.52 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=221.0
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhcc--CCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCCh
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNK--YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG 106 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~--~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sG 106 (471)
++.|+|..+++. .+|.|++++...+.+. ...+|+... ...+ ++.+++++|++.+ -.+.++||
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~-------~~~l----r~~la~~~g~~~~---~i~~t~g~ 91 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSAS-------SQKL----REVAGELYGFDPS---WIIMANGS 91 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSS-------CHHH----HHHHHHHHTCCGG---GEEEESSH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCc-------hHHH----HHHHHHHhCcCcc---eEEEcCCH
Confidence 357888888765 3789999998877553 012444321 1233 3667888897654 23556777
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEE
Q 012104 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (471)
Q Consensus 107 t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi 186 (471)
++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++. ++.+ +++ .+..++|+|+
T Consensus 92 ~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g--~~~~~v~~~~-~~~~--~~l---~~~~~~~~v~ 154 (360)
T 3hdo_A 92 DEVLNNLIRAFAAEGEEIGYVHPSYSYYGT---------LAEVQG--ARVRTFGLTG-DFRI--AGF---PERYEGKVFF 154 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESSSCTHHHH---------HHHHHT--CEEEEECBCT-TSSB--TTC---CSSBCSSEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCChHHHHH---------HHHHCC--CEEEEeeCCC-CCCH--HHH---HhhcCCCEEE
Confidence 889999999999999999999999876532 122334 3555666553 3444 333 3334678776
Q ss_pred E-c-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCC-C--CccEEEeCCCCcC--CCCCeEEEEeeCC
Q 012104 187 C-G-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E--YCHIVTTTTHKSL--RGPRAGMIFYRKG 259 (471)
Q Consensus 187 ~-~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~-~--~aDiv~~s~~K~l--~GprgG~i~~~~~ 259 (471)
+ + +||+|..+|.++++++|+++|++|++|++|. ++. +..+.++ . ..+++++|+||++ +|.|.|++++++
T Consensus 155 i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~-~~~--~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~- 230 (360)
T 3hdo_A 155 LTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYA-EFA--ESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARP- 230 (360)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTG-GGS--SCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCH-
T ss_pred EeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChH-hhC--CcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCH-
Confidence 4 4 6889999999999999999999999999997 432 2111111 1 2348899999994 688899999876
Q ss_pred CCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeC
Q 012104 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTG 339 (471)
Q Consensus 260 ~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~ 339 (471)
++.+.+.....+ .+++...+++...+++. ..++++..+++.++++++.+.|++.|+.+..
T Consensus 231 --------------~~~~~~~~~~~~---~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~- 290 (360)
T 3hdo_A 231 --------------EVIAALDKIRDH---YNLDRLAQAACVAALRD--QAYLSECCRRIRETREWFTTELRSIGYDVIP- 290 (360)
T ss_dssp --------------HHHHHHHHHSCS---CCSCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHHTTCEECC-
T ss_pred --------------HHHHHHHHhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEEcC-
Confidence 566666654333 23455555555556664 3356788888899999999999988988753
Q ss_pred CCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 340 GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 340 ~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
....++|+.+. +.+..++.+.|.++||.+.++..+ ..++++||++. +++|++++.+.|+++-+
T Consensus 291 -~~~~~~~~~~~--~~~~~~l~~~l~~~gi~v~~~~~~-----~~~~~iRis~~-------~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 291 -SQGNYLFATPP--DRDGKRVYDGLYARKVLVRHFSDP-----LLAHGMRISIG-------TREEMEQTLAALKEIGE 353 (360)
T ss_dssp -CSSSEEEEECT--TCCHHHHHHHHHHTTEECBCCCST-----TTTTSEEEECC-------CHHHHHHHHHHHHHHHC
T ss_pred -CCccEEEEECC--CCCHHHHHHHHHHCCEEEEECCCC-----CCCCEEEEEcC-------CHHHHHHHHHHHHHHhc
Confidence 33456677664 457888988999999999875432 23478999973 47999999999887654
No 86
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.94 E-value=1.2e-24 Score=223.69 Aligned_cols=343 Identities=11% Similarity=-0.015 Sum_probs=223.9
Q ss_pred ccCCeeEecCCC----CCcHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeec
Q 012104 30 QCRGIELIASEN----FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQP 103 (471)
Q Consensus 30 ~~~~i~li~s~n----~~s~~v~~a~~~~l~~~~--~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~ 103 (471)
..+.|+|..+.. +.++.+.+++...+.+.. ..+|+.. .....+++...+++++.+|.+ +.+ ..+.+
T Consensus 75 ~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~------~g~~~lr~~ia~~~~~~~g~~-~~~-~v~~t 146 (448)
T 3aow_A 75 TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTT------KGFTPLRETLMKWLGKRYGIS-QDN-DIMIT 146 (448)
T ss_dssp TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCT------TCCHHHHHHHHHHHHHHHCCC-TTS-EEEEE
T ss_pred CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCC------CCcHHHHHHHHHHHHHhcCcC-Chh-hEEEe
Confidence 456788865432 245788888877664321 1122211 112344444445555566884 222 23445
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhh----h
Q 012104 104 YSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKAL----D 179 (471)
Q Consensus 104 ~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~----~ 179 (471)
++|++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++.++ + .+|+++|++.+. +
T Consensus 147 ~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~---------~~~~~g--~~~~~v~~~~-~-g~d~~~L~~~l~~~~~~ 213 (448)
T 3aow_A 147 SGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQ---------AFNFYE--PQYIQIPLDD-E-GMKVEILEEKLKELKSQ 213 (448)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTC--CEEEEEEEET-T-EECHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHH---------HHHHcC--CEEEEeccCC-C-CCCHHHHHHHHhhhhcc
Confidence 666789999999999999999999999876542 122334 4555666664 3 399999999986 3
Q ss_pred -CCCcEEEE--c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----CccEEEeCCCCcCC
Q 012104 180 -FRPKLIIC--G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCHIVTTTTHKSLR 247 (471)
Q Consensus 180 -~~pklIi~--~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aDiv~~s~~K~l~ 247 (471)
.+|++|++ + +||+|..++. ++|.++|+++|++||+|++|. ++.+.|..+.++. +.++++.|++|++.
T Consensus 214 ~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~-~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~ 292 (448)
T 3aow_A 214 GKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYG-ELRYSGNPEKKIKALDNEGRVIYLGTFSKILA 292 (448)
T ss_dssp TCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCT-TCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC
T ss_pred CCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCc-cccCCCCCCcCHHhcCCCCCEEEEccchhhcc
Confidence 37898753 3 6889998875 578899999999999999997 5555443222221 24589999999974
Q ss_pred -CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHH
Q 012104 248 -GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA-STPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 248 -GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~-~~~~~~~~~~~~~~na~~l 325 (471)
|.|.|++++++ ++.+.+.........+. +....++.+.+++.. ....+++..+++.++++.+
T Consensus 293 ~GlriG~v~~~~---------------~l~~~l~~~~~~~~~~~-~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l 356 (448)
T 3aow_A 293 PGFRIGWMVGDP---------------GIIRKMEIAKQSTDLCT-NVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAM 356 (448)
T ss_dssp GGGCCEEEEECH---------------HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccEEEEEeCH---------------HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 56789999986 45555543221111222 333334444455432 1223456666777888999
Q ss_pred HHHHHcC---CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCH
Q 012104 326 GNYLTGK---GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLE 402 (471)
Q Consensus 326 ~~~L~~~---g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~ 402 (471)
.+.|++. |+.+. .+...+++|+++.. +++..++.+.|.+.||.+.++..++.. +...+++||++... ++
T Consensus 357 ~~~L~~~~~~g~~~~-~p~~g~~~~v~~~~-~~~~~~l~~~l~~~gV~v~pg~~f~~~-~~~~~~iRls~~~~-----~~ 428 (448)
T 3aow_A 357 LEALEEFMPEGVKWT-KPEGGMFIWVTLPD-GIDSKKMLERAIKKGVAYVPGEAFYAH-RDVKNTMRLNFTYV-----DE 428 (448)
T ss_dssp HHHHHHHCCTTCEEC-CCSBSSEEEEECST-TCCHHHHHHHHHHTTEECEEGGGGSTT-CCCCSEEEEECSSS-----CT
T ss_pred HHHHHHhCCCCeEEe-CCCccEEEEEEcCC-CCCHHHHHHHHHHCCcEEEcchhhcCC-CCCCCEEEEEeCCC-----CH
Confidence 9999874 78774 34456788998853 567888877777779999987655321 12357899998543 36
Q ss_pred HHHHHHHHHHHHHHHH
Q 012104 403 KDFEQIGEFLHRAVTL 418 (471)
Q Consensus 403 ~d~~~l~~~i~~~l~~ 418 (471)
+++++..+.|.++++.
T Consensus 429 e~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 429 DKIMEGIKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899988888887754
No 87
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=1.8e-26 Score=233.17 Aligned_cols=341 Identities=14% Similarity=0.090 Sum_probs=211.2
Q ss_pred CCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc
Q 012104 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL 118 (471)
Q Consensus 39 s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all 118 (471)
+...++|.|++++...+.+.+ ++++..+..+....+.++ ..++++++++|++.+ ..+.++||++|+.+++.+++
T Consensus 28 ~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~~la~~~~~~~~---~v~~~~g~t~al~~~~~~l~ 101 (400)
T 3vax_A 28 ATTRVDQRVADIVLHWMTAEF--GNAGSRHEYGIRAKRGVE-RAREYLASTVSAEPD---ELIFTSGATESNNIALLGLA 101 (400)
T ss_dssp CCSSSCHHHHHHHHHHHHHHH--SCSSCHHHHHHHHHHHHH-HHHHHHHHHTTCCGG---GEEEESCHHHHHHHHHHTTH
T ss_pred CCCCCCHHHHHHHHHHHHhcc--CCCcccchhHHHHHHHHH-HHHHHHHHHcCCCCC---cEEEeCCHHHHHHHHHHHHH
Confidence 344678999999988876554 333332222222222233 456889999998753 23556677899999999998
Q ss_pred ----CCCC-EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCC
Q 012104 119 ----EPHD-RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSA 191 (471)
Q Consensus 119 ----~pGD-~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~ 191 (471)
+||| +|++.++.|+++.... ......+.+++.++++ +++.+|+++|++.+.+ ++++|++. +||
T Consensus 102 ~~~~~~gd~~Vl~~~~~~~~~~~~~--------~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 171 (400)
T 3vax_A 102 PYGERTGRRHIITSAIEHKAVLEPL--------EHLAGRGFEVDFLTPG-PSGRISVEGVMERLRP-DTLLVSLMHVNNE 171 (400)
T ss_dssp HHHHHHTCCEEEEETTSCHHHHHHH--------HHHHTTTCEEEEECCC-TTCCCCHHHHHTTCCT-TEEEEECCSBCTT
T ss_pred HhhccCCCCEEEECccccHhHHHHH--------HHHHhcCCeEEEEccC-CCCCcCHHHHHHhcCC-CceEEEEECCCCC
Confidence 8999 9999998887653211 0111123456666666 4688999999998864 68888754 788
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCC-ccEEEeCCCCcCCCCCe-EEEE-eeCC-CCCCCCCC
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEY-CHIVTTTTHKSLRGPRA-GMIF-YRKG-PKPPKKGQ 267 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~-aDiv~~s~~K~l~Gprg-G~i~-~~~~-~~~~~~~~ 267 (471)
+|...|+++|.++|+++|++|++|++|+.|... .++.. +|++++|+||+ .||.| |+++ ++++ +....
T Consensus 172 tG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~~~s~~K~-~g~~g~g~~~~~~~~~~~~~~--- 242 (400)
T 3vax_A 172 TGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP-----GDLTTPIDMISISGHKI-GAPKGVGALVTRRREEMDDER--- 242 (400)
T ss_dssp TCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG-----GGGGSCCSEEEEETGGG-TSCSSCEEEEECBCSSSTTCB---
T ss_pred ceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC-----cChhhcCcEEEEeHHHh-CCCCceEEEEEecchhccccc---
Confidence 999999999999999999999999999755321 11211 79999999994 56764 8877 7662 10000
Q ss_pred CCCcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCC--C
Q 012104 268 PEGAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTE--N 343 (471)
Q Consensus 268 ~~i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~--~ 343 (471)
. .+...+... ......++++...++++..+++... .++++..++..++++++.+.|+..|+.+...... .
T Consensus 243 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 316 (400)
T 3vax_A 243 V-----PLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVP 316 (400)
T ss_dssp C-----CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCT
T ss_pred c-----ccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCC
Confidence 0 000000000 0001134556667777767776543 3567888899999999999998448887643221 2
Q ss_pred eeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC----------CCC----CCCeeEEec-CCCCCcCCCHHHHHHH
Q 012104 344 HLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS----------SAL----APGGVRIGT-PAMTSRGLLEKDFEQI 408 (471)
Q Consensus 344 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~----------~~~----~~~~iRig~-~~~t~~g~~~~d~~~l 408 (471)
+++++.+. +.+..++.+.|. +||.++++..+... -.. ..+.+||++ +..++ +++++++
T Consensus 317 ~~~~~~~~--~~~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t----~e~i~~~ 389 (400)
T 3vax_A 317 HILNLSFE--DVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQAT----DLDVEEL 389 (400)
T ss_dssp TEEEEECT--TCCHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------
T ss_pred CEEEEEeC--CCCHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCC----HHHHHHH
Confidence 45555554 567888988888 99999876422110 000 137899998 65443 6899999
Q ss_pred HHHHHHHHH
Q 012104 409 GEFLHRAVT 417 (471)
Q Consensus 409 ~~~i~~~l~ 417 (471)
.+.|.++++
T Consensus 390 ~~~l~~~~~ 398 (400)
T 3vax_A 390 ARGVAKLKP 398 (400)
T ss_dssp ---------
T ss_pred HHHHHHHhc
Confidence 999887764
No 88
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.8e-25 Score=229.77 Aligned_cols=357 Identities=11% Similarity=0.046 Sum_probs=231.2
Q ss_pred cChHHHHHHHHHHH--------hccCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 012104 15 VDPEIHDLIEKEKR--------RQCRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRS 84 (471)
Q Consensus 15 ~d~~~~~~~~~e~~--------~~~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~ 84 (471)
+++.++..+.+... ...+.|+|..+.+. .++.+.+++...+......+|+.. .....+++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~------~g~~~lr~~ia~ 106 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT------RGRPSLINSLIK 106 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT------TCCHHHHHHHHH
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC------CCCHHHHHHHHH
Confidence 45556666654431 34467888777532 468899998877643111223221 112345444456
Q ss_pred HHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC
Q 012104 85 RALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS 164 (471)
Q Consensus 85 ~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~ 164 (471)
++++.+|.+.+.- -.+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++
T Consensus 107 ~l~~~~g~~~~~~-~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~~g~--~~~~v~~~~~ 174 (447)
T 3b46_A 107 LYSPIYNTELKAE-NVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIP---------NIELCGG--KVVYVPINPP 174 (447)
T ss_dssp HHTTTTTSCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HHHHTTC--EEEEEEEECC
T ss_pred HHHHhcCCCCChh-hEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHH---------HHHHcCC--EEEEEeCCCc
Confidence 6666677543211 12445556789999999999999999999999877542 1223443 4455555544
Q ss_pred -----------CCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccc---cHHHHHHHHHHhCCEEEEeccccchhhccccC
Q 012104 165 -----------TGYIDYDKLEEKALDFRPKLIICG--GSAYPRDW---DYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (471)
Q Consensus 165 -----------~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~---d~~~i~~ia~~~g~~livD~a~~~glv~~g~~ 228 (471)
++.+|+++|++.+. .++++|+++ +||+|..+ ++++|+++|+++|++||+|++|. ++.+.|..
T Consensus 175 ~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~ 252 (447)
T 3b46_A 175 KELDQRNTRGEEWTIDFEQFEKAIT-SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYE-HLYFTDSF 252 (447)
T ss_dssp GGGGTSCBCSTTSEECHHHHHTTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTT-TCBCSSCC
T ss_pred cccccccccccCcccCHHHHHHhhc-cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccch-hcccCCCC
Confidence 46799999999886 478877754 68899886 47788899999999999999997 55555422
Q ss_pred CC--CC-C---CccEEEeCCCCcC--CCCCeEEEEe-eCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHH
Q 012104 229 AN--PF-E---YCHIVTTTTHKSL--RGPRAGMIFY-RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGAL 299 (471)
Q Consensus 229 ~~--p~-~---~aDiv~~s~~K~l--~GprgG~i~~-~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~ 299 (471)
++ .+ . ..+++++|+||++ +|+|.|++++ ++ ++.+.+.........+. +....+++
T Consensus 253 ~~~~~~~~~~~~~~i~i~S~sK~~~~~G~riG~~~~~~~---------------~l~~~l~~~~~~~~~~~-~~~~~~a~ 316 (447)
T 3b46_A 253 TRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNA---------------ELLSYAAKAHTRICFAS-PSPLQEAC 316 (447)
T ss_dssp CCGGGSCHHHHTTEEEEEEHHHHTTCTTSCCEEEECSCH---------------HHHHHHHHHHHHHTSSC-CHHHHHHH
T ss_pred cCHHHcCCCCCCcEEEEecCchhcCCcchhhEEEEeCCH---------------HHHHHHHHHHhhccCCC-ChHHHHHH
Confidence 21 12 1 4679999999995 6888999999 65 45554443211111122 33334455
Q ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCC--------------CCCHHHHHHHH
Q 012104 300 AVALKQAS-TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL--------------GLTGNKVEKLC 364 (471)
Q Consensus 300 a~al~~~~-~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~L 364 (471)
+.+++... ...+++..+++.++++.|.+.|++.|+++. .+..++++|+++... +.+..++.+.|
T Consensus 317 ~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 395 (447)
T 3b46_A 317 ANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYT-APEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWL 395 (447)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEE-CCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHH
T ss_pred HHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec-CCCeeEEEEEecccccCccccccccccccCCCHHHHHHHH
Confidence 55666542 123567788888899999999988898875 345567889988642 13455666555
Q ss_pred -hhcCeEeccCCcCCCCC--CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 365 -DLCNITVNKNAVFGDSS--ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 365 -~~~gI~v~~~~~p~~~~--~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
+++||.+.++..++... +...+++||++.. +++++++..+.|.+
T Consensus 396 ~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~------~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 396 INELGVVAIPPTEFYIKEHEKAAENLLRFAVCK------DDAYLENAVERLKL 442 (447)
T ss_dssp HHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS------CHHHHHHHHHHGGG
T ss_pred HHhCCEEEECchHhCCCCccCCCCCEEEEEEeC------CHHHHHHHHHHHHH
Confidence 57899998876554211 1125789999842 47788887777654
No 89
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.94 E-value=3e-24 Score=219.23 Aligned_cols=305 Identities=10% Similarity=0.040 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHhcCCCCCC------CceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceecc
Q 012104 78 IENLCRSRALQTFHLDPTQ------WGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 78 lE~~~~~~~~~lfg~~~~~------~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
+.+...+++++.+|.+... ....+.++++++|+.+++.++++|||+|++.+|.|.++.. .+...|
T Consensus 83 lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~---------~~~~~g 153 (425)
T 2r2n_A 83 LLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ---------SLHPLG 153 (425)
T ss_dssp HHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHGGGT
T ss_pred HHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHHcC
Confidence 3333446677778876421 0012444555689999999999999999999999876542 122334
Q ss_pred ceeEEEeeeecCCCCCCCHHHHHHHhhh-----------CCCcEEEE-c--CCCCCccccHH---HHHHHHHHhCCEEEE
Q 012104 152 IYFESLPYKVNSSTGYIDYDKLEEKALD-----------FRPKLIIC-G--GSAYPRDWDYA---RFRAVADKCGALLLC 214 (471)
Q Consensus 152 ~~~~~~~~~v~~~~~~iD~~~le~~~~~-----------~~pklIi~-~--~s~~g~~~d~~---~i~~ia~~~g~~liv 214 (471)
.+++.+++++ + .+|+++|++.+.. .++++|++ . +||+|..++.+ +|.++|+++|++||+
T Consensus 154 --~~~~~v~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~ 229 (425)
T 2r2n_A 154 --CNIINVASDE-S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIE 229 (425)
T ss_dssp --CEEEEECEET-T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred --CEEEEeCcCC-C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 3555666663 2 4999999999863 35788875 3 78999999876 888999999999999
Q ss_pred eccccchhhccccCCCCC---C--CccEEEeCCCCcC-CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCC
Q 012104 215 DMAHISGLVAAQEAANPF---E--YCHIVTTTTHKSL-RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQ 288 (471)
Q Consensus 215 D~a~~~glv~~g~~~~p~---~--~aDiv~~s~~K~l-~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~ 288 (471)
|++|. ++.+.|..+.++ + ..+++++|+||++ +|.|.|++++++ ++.+.+.........
T Consensus 230 De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~---------------~l~~~l~~~~~~~~~ 293 (425)
T 2r2n_A 230 DDPYY-FLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPK---------------PLIERVILHIQVSTL 293 (425)
T ss_dssp ECTTG-GGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEH---------------HHHHHHHHHHHTTTC
T ss_pred ECCcc-cccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCH---------------HHHHHHHHHHHHhcC
Confidence 99997 666655322222 1 2348899999996 567889999987 455555432212112
Q ss_pred CCCcHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHcC--CceEeeCCCCCeeEEEEccCCCCCHHH-HH
Q 012104 289 GGPHNHQIGALAVALKQAST----PAFKAYAKQVKANAVALGNYLTGK--GYSLVTGGTENHLVLWDLRPLGLTGNK-VE 361 (471)
Q Consensus 289 g~p~~~~iaa~a~al~~~~~----~~~~~~~~~~~~na~~l~~~L~~~--g~~i~~~~~~~~~~~v~~~~~~~~~~~-~~ 361 (471)
+++....++++.+++.... .++++..+++.++++.+.+.|++. |+..+..+..++++|+++.. +.+..+ +.
T Consensus 294 -~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~-~~~~~~~~~ 371 (425)
T 2r2n_A 294 -HPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG-INDVKELIE 371 (425)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT-CSCCHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC-CCCHHHHHH
Confidence 3344444455555654221 234556667777888888999874 76322344566788998864 234445 57
Q ss_pred HHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 362 KLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 362 ~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+.|.++||.+.++..++.......+++||++.. .++++++++.+.|.++++.
T Consensus 372 ~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-----~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 372 EKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-----ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp THHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-----CCHHHHHHHHHHHHHHHHH
Confidence 888899999998876553211234789999842 2478999999999887753
No 90
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.94 E-value=5.6e-25 Score=222.38 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-c
Q 012104 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-L 118 (471)
Q Consensus 40 ~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al-l 118 (471)
...+++++++++...+.+.|.. . .| ....++ ++.+++++|.+. .+.++||++|+.+++.++ +
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~~~---~----~g-~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~~~~l~~ 69 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNYIA---P----LG-EFVNRF----EQSVKDYSKSEN-----ALALNSATAALHLALRVAGV 69 (394)
T ss_dssp -----CCHHHHHHHHHHHTTTS---C----TT-HHHHHH----HHHHHHHHCCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHcCCcc---C----CC-hHHHHH----HHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 3456778888888777654321 0 12 223334 467888899753 466788999999999999 9
Q ss_pred CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC--CCcEEEEcCCCCCccc
Q 012104 119 EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICGGSAYPRDW 196 (471)
Q Consensus 119 ~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~--~pklIi~~~s~~g~~~ 196 (471)
+|||+|+++++.|.++.. .+...| .+++.++++ +++.+|++++++.+.+. ++++|++.+ ++|...
T Consensus 70 ~~gd~Vl~~~~~~~~~~~---------~~~~~g--~~~~~v~~~-~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~ 136 (394)
T 1o69_A 70 KQDDIVLASSFTFIASVA---------PICYLK--AKPVFIDCD-ETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAA 136 (394)
T ss_dssp CTTCEEEEESSSCGGGTH---------HHHHTT--CEEEEECBC-TTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCC
T ss_pred CCCCEEEECCCccHHHHH---------HHHHcC--CEEEEEEeC-CCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChh
Confidence 999999999999876542 122334 355666666 56889999999998754 688887664 889999
Q ss_pred cHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccchH
Q 012104 197 DYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFE 276 (471)
Q Consensus 197 d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~ 276 (471)
++++|.++|+++|++|++|++|+.|+.+.+.....+..+|+.++|.||.+.|+++|+++++++ ++.
T Consensus 137 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~--------------~l~ 202 (394)
T 1o69_A 137 KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNK--------------EKI 202 (394)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCH--------------HHH
T ss_pred hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCH--------------HHH
Confidence 999999999999999999999987776554322233457888888899998889999999642 444
Q ss_pred hhhhhcCCCCCCCCC------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCC---
Q 012104 277 DKINFAVFPSLQGGP------------HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGT--- 341 (471)
Q Consensus 277 ~~i~~~~~~~~~g~p------------~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~--- 341 (471)
+.+......+..+.+ .....+++ ++... ..+++..+++.++++++.+.|.+. +++.....
T Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~--~l~~l--~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~ 277 (394)
T 1o69_A 203 EKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAI--GVAQM--EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSR 277 (394)
T ss_dssp HHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHH--HHHHH--TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEE
T ss_pred HHHHHHHHhccccCccccccccCcccCcCHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCc
Confidence 444332111110000 11112222 22221 135667788899999999999887 66543211
Q ss_pred CC-eeEEEEccCC--------------------CCCHHHHHHHHhhcCeEeccCCcCCCCCC-CCC--------------
Q 012104 342 EN-HLVLWDLRPL--------------------GLTGNKVEKLCDLCNITVNKNAVFGDSSA-LAP-------------- 385 (471)
Q Consensus 342 ~~-~~~~v~~~~~--------------------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~-~~~-------------- 385 (471)
.+ +++++.+... +++..++.+.|.+.||.++++..|....| ...
T Consensus 278 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 357 (394)
T 1o69_A 278 SNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQ 357 (394)
T ss_dssp CCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHH
T ss_pred ceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhc
Confidence 22 2466666432 23567788999999999998754321111 100
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.++|+.+. ..++++|++++++.|.+++..
T Consensus 358 ~~~~~~~~----~~~t~edi~~~~~~l~~~~~~ 386 (394)
T 1o69_A 358 KGICLPSG----TAMSKDDVYEISKLILKSIKA 386 (394)
T ss_dssp HEEEECCC----TTCCHHHHHHHHHHHHHHHC-
T ss_pred CeEEccCC----CCCCHHHHHHHHHHHHHHHhc
Confidence 34555442 335689999999999887654
No 91
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=1.1e-25 Score=226.37 Aligned_cols=321 Identities=11% Similarity=0.028 Sum_probs=210.6
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHH-HHhcC-CCCCCCceeeecCChHHHHHHHHHHh-cC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRA-LQTFH-LDPTQWGVNVQPYSGSPANFAAYTAV-LE 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~-~~lfg-~~~~~~~~~v~~~sGt~A~~~~~~al-l~ 119 (471)
.++.+++++...+.+.+. +......+++| +.+ ++++| .++ .|.++||+.|+.+++.++ ++
T Consensus 14 ~~~~i~~a~~~~~~~~~~--------~~~~~~~~~l~----~~~~a~~~g~~~~-----~v~~~sgt~al~~al~~l~~~ 76 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHIY--------TNYGPINQRFE----QTIMSGFFQNRGA-----VTTVANATLGLMAAIQLKKRK 76 (377)
T ss_dssp CGGGGHHHHHHHHHHTCC--------SSSCHHHHHHH----HHHHHHTSTTCSE-----EEEESCHHHHHHHHHHHHSCT
T ss_pred CcHHHHHHHHHHHHcCCc--------ccCCHHHHHHH----HHHHHHHhCCCCe-----EEEeCCHHHHHHHHHHHcCCC
Confidence 367788888777755431 11013445555 567 89999 443 477889999999999998 99
Q ss_pred CCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCC--CcEEEEcCCCCCcccc
Q 012104 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR--PKLIICGGSAYPRDWD 197 (471)
Q Consensus 120 pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~--pklIi~~~s~~g~~~d 197 (471)
|||+|++++++|.++.. .+...| .+++.++++++++.+|++++++++...+ +|+|+. .+++|...|
T Consensus 77 ~Gd~Vi~~~~~~~~~~~---------~~~~~G--~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~-~~~~G~~~~ 144 (377)
T 3ju7_A 77 KGKYALMPSFTFPATPL---------AAIWCG--LEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP-YATFGSWMN 144 (377)
T ss_dssp TCCEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC-BCGGGBCCC
T ss_pred CcCEEEECCCCcHHHHH---------HHHHcC--CEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE-ECCCCCccC
Confidence 99999999999876532 122334 4666777777788999999999884345 888874 457899999
Q ss_pred HHHHHHHHHHhCCEEEEeccccchhhccccCC-CCCCCccEEEeC--CCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccc
Q 012104 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NPFEYCHIVTTT--THKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYD 274 (471)
Q Consensus 198 ~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p~~~aDiv~~s--~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~ 274 (471)
+++|.++|+ +|++|++|++|+.|....+... .. .+|+.++| .||++.+++||+++++++ +
T Consensus 145 ~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~--~~d~~~~S~~~~K~l~~g~gG~~~~~~~--------------~ 207 (377)
T 3ju7_A 145 LEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQD--FSGMIIYSFHATKPFGIGEGGLIYSKNE--------------E 207 (377)
T ss_dssp CHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTT--CSSEEEEECBTTSSSCCBSCEEEEESCH--------------H
T ss_pred HHHHHHHHh-cCCEEEEECCCccCCeECCEeccCC--CCcEEEEECCCCCcCCCCCcEEEEECCH--------------H
Confidence 999999999 9999999999987765443322 11 24555554 679998888999998874 5
Q ss_pred hHhhhhhcCCCC-----------CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC---ceEeeCC
Q 012104 275 FEDKINFAVFPS-----------LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG---YSLVTGG 340 (471)
Q Consensus 275 l~~~i~~~~~~~-----------~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g---~~i~~~~ 340 (471)
+.+++......+ ..... ....++++ +..+ ..++.+.++..++++++.+.|.+.+ +.+....
T Consensus 208 l~~~~~~~~~~g~~~~~~~~~~g~~~~~-~~~~aa~~--~~~l--~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 282 (377)
T 3ju7_A 208 DIQRIKRMGNFGFDTNRECTMMGFNCKM-SEYAAAIG--IATM--KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQK 282 (377)
T ss_dssp HHHHHHHHTBTTBCTTSCBCSSCCBCCC-CHHHHHHH--HHHH--HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCC
T ss_pred HHHHHHHHHhcCCCCCCceeeccccCCC-CHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCC
Confidence 555554332211 11111 11222222 2222 3567788888999999999998874 2222111
Q ss_pred --CCCee-EEEEccCCCCCHHHHHHHHhhcCeEeccCCc-CCCCCCC---------------CCCeeEEecCCCCCcCCC
Q 012104 341 --TENHL-VLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSAL---------------APGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 341 --~~~~~-~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-p~~~~~~---------------~~~~iRig~~~~t~~g~~ 401 (471)
...|. +.+.+. .+.+.+++.+.|.++||.++..+. |.+..+. ....|||.+. ..++
T Consensus 283 ~~~~~~~~~~~~~~-~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~----~~~t 357 (377)
T 3ju7_A 283 TEAVIQQFMPILCP-EEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLW----EGMT 357 (377)
T ss_dssp CSCBCCSSEEEECC-TTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCC----TTCC
T ss_pred CCcceEEEEEEEeC-ChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCC----CCCC
Confidence 12232 334433 234588999999999999988752 2221110 1246888763 3467
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~~ 419 (471)
++|++++++.|.+++..+
T Consensus 358 ~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 358 KEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp HHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998877653
No 92
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.94 E-value=1.6e-25 Score=227.55 Aligned_cols=310 Identities=11% Similarity=0.058 Sum_probs=208.2
Q ss_pred cChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhh--ccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHhc
Q 012104 15 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALT--NKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTF 90 (471)
Q Consensus 15 ~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~--~~~--~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf 90 (471)
...++++.+.+|++++...++.++++|. ++|++++..... ..+ .+||...| ...+.+| +++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~~~gy~y~~-----~~~~~Le----~~lA~l~ 86 (427)
T 3i16_A 18 RVLKLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTNSSGYGYGD-----IGRDSLD----AVYARVF 86 (427)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCCCCTTCTTC-----HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCCCCCCCCCH-----HHHHHHH----HHHHHHh
Confidence 3456777888898899899999999987 789999875421 111 23333222 2355666 5789999
Q ss_pred CCCCCCCceeee--cCChHHHHHHHHHHhcCCCCEEEEeC-CCCCCccccc-ccccC-CccceeccceeEEEeeeecCCC
Q 012104 91 HLDPTQWGVNVQ--PYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLTHG-YYTSG-GKKISATSIYFESLPYKVNSST 165 (471)
Q Consensus 91 g~~~~~~~~~v~--~~sGt~A~~~~~~all~pGD~Vl~~~-~~~~g~~s~~-~~~~~-g~~~~~~g~~~~~~~~~v~~~~ 165 (471)
|++. +.++ ++||++||.+++.++++|||+|++.+ +.|+++.... ..... ...+...| .+++.++++ ++
T Consensus 87 g~e~----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G--~~~~~v~~~-~~ 159 (427)
T 3i16_A 87 NTES----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFG--INYKQVDLK-ED 159 (427)
T ss_dssp TCSE----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGT--CEEEECCCC-TT
T ss_pred CCcc----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcC--CEEEEecCc-cC
Confidence 9986 4454 78999999999999999999999998 8887664100 00000 00111223 455566655 45
Q ss_pred CCCCHHHHHHHhhh-CCCcEEEEc------CCCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCCC-Cc
Q 012104 166 GYIDYDKLEEKALD-FRPKLIICG------GSAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YC 235 (471)
Q Consensus 166 ~~iD~~~le~~~~~-~~pklIi~~------~s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~~-~a 235 (471)
+.+|++++++++++ .++|+|++. +|++|...|+++|+++|++ +|+++++|++|+.+.. ...|+. ++
T Consensus 160 g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~----~~~p~~~ga 235 (427)
T 3i16_A 160 GKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMD----TKEPTDVGA 235 (427)
T ss_dssp SSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSS----SSCGGGGTC
T ss_pred CCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccc----cCCccccCC
Confidence 78999999999974 478988854 3678888999999999999 9999999999974431 124444 68
Q ss_pred cEEEeCCCCcCCC---CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcC-CCCCC--CCCcHHHHHHHHHHHHHhccH
Q 012104 236 HIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-FPSLQ--GGPHNHQIGALAVALKQASTP 309 (471)
Q Consensus 236 Div~~s~~K~l~G---prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~-~~~~~--g~p~~~~iaa~a~al~~~~~~ 309 (471)
|++++|+||++.| |+||++++++ ++.+++.... .++.. .+|.... + ..+++.+.
T Consensus 236 Div~~S~sK~lgg~g~~~gG~i~~~~---------------~li~~l~~~~~~~~~g~~~~~~~~~--a-~~~l~gl~-- 295 (427)
T 3i16_A 236 DLIAGSLIKNIGGGIAPTGGYLAGTK---------------DCIEKTSYRLTVPGIGGECGSTFGV--V-RSMYQGLF-- 295 (427)
T ss_dssp SEEEEETTSGGGTTTCCSCEEEEECH---------------HHHHHHHHHHSCTTTGGGCCCCTTC--H-HHHHHHHH--
T ss_pred eEEEecCcccCCCCCCceEEEEEECH---------------HHHHHHHHhcccCccCccCCccHHH--H-HHHHHHHH--
Confidence 9999999999987 8899999987 5666665422 22221 1231210 1 11222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCe-----eEEEEccCCCCCHHHHHHHHhhcCe
Q 012104 310 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENH-----LVLWDLRPLGLTGNKVEKLCDLCNI 369 (471)
Q Consensus 310 ~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~gI 369 (471)
....+.++..+|+.++++.|+++|+++..+ .+| ++.+.+... -....+.+.|.....
T Consensus 296 ~~~~r~~~~~~~a~~la~~L~~~g~~V~p~--~~~~~~~~i~~i~l~~~-~~~~~f~~~l~~~~~ 357 (427)
T 3i16_A 296 LAPHISMEALKGAILCSRIMELAGFEVMPK--YDEKRSDIIQSIKFNDK-DKLIEFCKGIQTGSP 357 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCEEEECSSH-HHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeecCC--CCCCCccEEEEEEECCH-HHHHHHHHHHhhcCc
Confidence 235678889999999999999999988433 445 666666421 112334555655543
No 93
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.94 E-value=5.3e-25 Score=224.19 Aligned_cols=332 Identities=14% Similarity=0.087 Sum_probs=216.6
Q ss_pred CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-c
Q 012104 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-L 118 (471)
Q Consensus 40 ~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al-l 118 (471)
...+++++++++...+.+.....|+. ..+..+..+.++ +++++++|++. .|.++||++|+.+++.++ +
T Consensus 11 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~g~~~l~~~l~----~~la~~~g~~~-----~i~~~~gt~al~~~~~~~~~ 79 (418)
T 2c81_A 11 WPQHSDRTRRKIEEVFQSNRWAISGY--WTGEESMERKFA----KAFADFNGVPY-----CVPTTSGSTALMLALEALGI 79 (418)
T ss_dssp SSCCCHHHHHHHHHHHHHTCCSTTSB--CCSSCCHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCccccCc--ccCCHHHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHcCC
Confidence 34568999999988875532111221 112223344444 67888999873 466789999999999999 9
Q ss_pred CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccH
Q 012104 119 EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDY 198 (471)
Q Consensus 119 ~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~ 198 (471)
+|||+|++.++.|.++.. .+...| .+++.++++++++.+|++++++.+.+ ++++|+++ +++|...|+
T Consensus 80 ~~gd~Vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~~~G~~~~~ 146 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATAT---------AVLNVN--ALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV-HLFGSMANM 146 (418)
T ss_dssp CTTCEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB-CCTTCCCCH
T ss_pred CCcCEEEECCCccHhHHH---------HHHHcC--CEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe-CCcCCcccH
Confidence 999999999999876532 122334 45666677755789999999998864 68888764 478999999
Q ss_pred HHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCC--CCcCCCCCeEEEEeeCCCCCCCCCCCCCcccchH
Q 012104 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT--HKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFE 276 (471)
Q Consensus 199 ~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~--~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~ 276 (471)
++|.++|+++|++|++|++|+.|..+.+..... ..|+++.|+ ||++.++++|+++++++ ++.
T Consensus 147 ~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~~~~s~s~~K~~~~g~~g~~~~~~~--------------~l~ 210 (418)
T 2c81_A 147 DEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGT--IGDIGAFSCQQGKVLTAGEGGIIVTKNP--------------RLF 210 (418)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCSSSCEEEEESCH--------------HHH
T ss_pred HHHHHHHHHCCCEEEEECcccccCccCCEeccc--ccceEEEeccCCcccCCCCeEEEEECCH--------------HHH
Confidence 999999999999999999998664333321112 235665555 99986558999998642 343
Q ss_pred hhhhhcCCCC----------------------CCCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 277 DKINFAVFPS----------------------LQGG--PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 277 ~~i~~~~~~~----------------------~~g~--p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
+++......+ ..|- ......+++. +... ..+++..++..++++++.+.|.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~~l--~~~~~~~~~~~~~~~~l~~~L~~~ 286 (418)
T 2c81_A 211 ELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LDQL--QELDDKNAIREKNAMFLNDALSKI 286 (418)
T ss_dssp HHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HHHH--TTHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhccC
Confidence 3332211110 0000 0011112222 1111 245677788888899999999887
Q ss_pred -CceEeeCCCC----C-eeEEEEccC---CCCCHHHHHHHHhhc-CeE---eccCCcCCCCCC-----------------
Q 012104 333 -GYSLVTGGTE----N-HLVLWDLRP---LGLTGNKVEKLCDLC-NIT---VNKNAVFGDSSA----------------- 382 (471)
Q Consensus 333 -g~~i~~~~~~----~-~~~~v~~~~---~~~~~~~~~~~L~~~-gI~---v~~~~~p~~~~~----------------- 382 (471)
|+++...+.. . +++.+.+.. .+++..++.+.|.+. ||. ++.+..|....+
T Consensus 287 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 366 (418)
T 2c81_A 287 DGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKT 366 (418)
T ss_dssp TTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCC
T ss_pred CCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccccccc
Confidence 8887532222 2 233356642 256888898888887 999 887654421110
Q ss_pred --------CC------CCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 383 --------LA------PGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 383 --------~~------~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.. .+.|||++...+ -+++|++++++.|.++++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~lrl~~~~~~---gt~edi~~~~~~l~~~~~~ 413 (418)
T 2c81_A 367 EAYWRGLHYPVSERASGQSIVIHHAILL---AEPSHLSLLVDAVAELARK 413 (418)
T ss_dssp HHHHHTCCCHHHHHHHHHEEEEEGGGGG---SCHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCChHHHHHHhCEEEecCCccC---CCHHHHHHHHHHHHHHHHh
Confidence 00 158999985543 0489999999999987753
No 94
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-25 Score=233.04 Aligned_cols=328 Identities=13% Similarity=0.099 Sum_probs=225.5
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC-CCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~-~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
++.+.+++...+... ....+. .|.......++|+.+++++++++|++ ... ..++++||++|+.+++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~la~~~g~~~~~~--~~~~~~ggt~a~~~a~~a~~~~~~ 151 (497)
T 3mc6_A 77 GDDLIHLQTIAYEKY-CVANQL--HPDVFPAVRKMESEVVSMVLRMFNAPSDTG--CGTTTSGGTESLLLACLSAKMYAL 151 (497)
T ss_dssp CHHHHHHHHHHHHHT-SSCBTT--CTTTCHHHHHHHHHHHHHHHHHTTCCTTTC--CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH-hhcCCC--CcccChHHHHHHHHHHHHHHHHhCCCCCCC--eEEEcCcHHHHHHHHHHHHHHHHH
Confidence 466666666555332 111111 12233445678878889999999998 222 246678889999999998865
Q ss_pred --CC---CEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCC
Q 012104 120 --PH---DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAY 192 (471)
Q Consensus 120 --pG---D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~ 192 (471)
+| |+|++..+.|.++.. .+...|. +++.++++++++.+|+++|++++.+ +|++|++. +|++
T Consensus 152 ~~~g~~~~~Vi~~~~~h~~~~~---------~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~npt 219 (497)
T 3mc6_A 152 HHRGITEPEIIAPVTAHAGFDK---------AAYYFGM--KLRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPH 219 (497)
T ss_dssp HHSCCSSCEEEEETTSCHHHHH---------HHHHSCC--EEEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTT
T ss_pred hcCCCCCceEEEeCCccHHHHH---------HHHHcCC--eEEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCC
Confidence 56 999999988765431 2233454 5555666644689999999999864 68877754 5689
Q ss_pred CccccHHHHHHHHHHhCCEEEEeccccchhhc----c--ccC-CCCC--CCccEEEeCCCCcCCCC-CeEEEEeeCCCCC
Q 012104 193 PRDWDYARFRAVADKCGALLLCDMAHISGLVA----A--QEA-ANPF--EYCHIVTTTTHKSLRGP-RAGMIFYRKGPKP 262 (471)
Q Consensus 193 g~~~d~~~i~~ia~~~g~~livD~a~~~glv~----~--g~~-~~p~--~~aDiv~~s~~K~l~Gp-rgG~i~~~~~~~~ 262 (471)
|...|+++|+++|+++|++|++|++|+.++.. . +.. +..+ .++|++++|+||++.|| +.|+++++++
T Consensus 220 G~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~--- 296 (497)
T 3mc6_A 220 GIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNS--- 296 (497)
T ss_dssp CCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSH---
T ss_pred CcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCH---
Confidence 99999999999999999999999999844321 1 112 1111 26899999999997555 5599988763
Q ss_pred CCCCCCCCcccchHhhhhhc----------CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 263 PKKGQPEGAVYDFEDKINFA----------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 263 ~~~~~~~i~~~~l~~~i~~~----------~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
.+. ..... ..+...|+.....+++..+++..+...+++++.++..++++++++.|++.
T Consensus 297 -----------~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (497)
T 3mc6_A 297 -----------DLR-MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN 364 (497)
T ss_dssp -----------HHH-TTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----------HHH-hhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 11111 11222334444556677777777766778899999999999999999994
Q ss_pred --CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 333 --GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 333 --g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
|++++..+. ..++++. ..+++..++.+.|.+.||.++.... ++++|++++ . .++++++++.+
T Consensus 365 ~~g~~~~~~~~-~~~v~~~--~~~~~~~~l~~~L~~~Gi~v~~~~~--------~~~~ri~~~-~----~t~e~i~~~~~ 428 (497)
T 3mc6_A 365 IPDLDIMGNPR-YSVISFS--SKTLNIHELSDRLSKKGWHFNALQK--------PVALHMAFT-R----LSAHVVDEICD 428 (497)
T ss_dssp CTTCEECSCCC-SSEEEEE--CTTTTHHHHHHHHHTTTCBCEECCS--------SCCEEEECC-T----TTTCTHHHHHH
T ss_pred CCCEEEecCCC-eeEEEEe--CCCCCHHHHHHHHHhCCEEEecCCC--------CCeEEEEEe-C----CCHHHHHHHHH
Confidence 899864433 3344444 3456888999999999998875432 246899875 2 24678888888
Q ss_pred HHHHHHHHH
Q 012104 411 FLHRAVTLT 419 (471)
Q Consensus 411 ~i~~~l~~~ 419 (471)
.|.++++..
T Consensus 429 ~L~~~l~~~ 437 (497)
T 3mc6_A 429 ILRTTVQEL 437 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 95
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.94 E-value=1.6e-24 Score=217.03 Aligned_cols=328 Identities=15% Similarity=0.040 Sum_probs=219.6
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
+.|+|..+++. .+|.|++++...+... .+|+.. .....+++...+++++.+|.+.+.. ..+.+++|++|
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~-~i~~t~g~~~a 94 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSL--NIYPKS------AFEESLRAAQRGFFKRRFKIELKEN-ELISTLGSREV 94 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGG--GSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGG-GEEEESSSHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhc--CCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHH-HEEECcCcHHH
Confidence 56788777654 4789999998776221 233321 1123444445567777778732111 23556777899
Q ss_pred HHHHHHHhcCC--CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 110 NFAAYTAVLEP--HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 110 ~~~~~~all~p--GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
+.+++.++++| ||+|++.+|.|.++.. .+...| .+++.++++++ +.+++ ++++.+.. ++++|++
T Consensus 95 l~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~~~~~~~-~~~~~-~l~~~~~~-~~~~v~~ 160 (376)
T 3ezs_A 95 LFNFPSFVLFDYQNPTIAYPNPFYQIYEG---------AAKFIK--AKSLLMPLTKE-NDFTP-SLNEKELQ-EVDLVIL 160 (376)
T ss_dssp HHHHHHHHTTTCSSCEEEEEESCCTHHHH---------HHHHTT--CEEEEEECCGG-GTSCC-CCCHHHHH-HCSEEEE
T ss_pred HHHHHHHHcCCCCCCEEEEecCCcHhHHH---------HHHHcC--CEEEEcccCCC-CCcch-hHHhhhcc-CCCEEEE
Confidence 99999999999 9999999999876532 122334 35555555533 23454 66666654 6888875
Q ss_pred c--CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCC----------CCccEEEeCCCCcC--CCCC
Q 012104 188 G--GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPF----------EYCHIVTTTTHKSL--RGPR 250 (471)
Q Consensus 188 ~--~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~----------~~aDiv~~s~~K~l--~Gpr 250 (471)
. +||+|..++. ++|+++|+++|++||+|++|. ++...+...+.+ ...++++.|+||++ +|.|
T Consensus 161 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r 239 (376)
T 3ezs_A 161 NSPNNPTGRTLSLEELISWVKLALKHDFILINDECYS-EIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLR 239 (376)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGC
T ss_pred cCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccch-hhccCCCCCCHHHccccccccccCcEEEEecchhccCCccce
Confidence 4 7889998885 456677999999999999997 555544222211 13569999999996 6778
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
.|++++++ ++.+.+........ .+++...+++...+++. ...+++..+++.++.+.+.+.|+
T Consensus 240 ~G~~~~~~---------------~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~ 301 (376)
T 3ezs_A 240 SGFIAGDS---------------RLLEKYKAFRAYLG-YTSANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK 301 (376)
T ss_dssp CEEEEECH---------------HHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST
T ss_pred eEEEeeCH---------------HHHHHHHHHHhhhc-CCCChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc
Confidence 89998876 56665554322222 23444455555556654 34567778888888888888887
Q ss_pred cCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhh-cCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 331 GKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDL-CNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 331 ~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
|+. .+..++++|+++. +..++.+.|.+ +||.+.++..++.. +...+++||++.. ++++++++.
T Consensus 302 --~~~---~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~-~~~~~~iRis~~~------~~~~i~~~l 365 (376)
T 3ezs_A 302 --NTL---IYPYSFYVYLPVQ----NGENFAKTLYQNEGIITLPALYLGRN-RIGADYVRLALVY------DTPLLEKPL 365 (376)
T ss_dssp --TCC---CCSBSSEEEEECS----CHHHHHHHHHHHHCCBCEEGGGGCST-TTTTTEEEEECCS------CHHHHHHHH
T ss_pred --CCC---CCCcceEEEEECC----CHHHHHHHHHHhCCEEEeCcHHhCCC-CCCCCeEEEEEcC------CHHHHHHHH
Confidence 665 2345667888875 56777776765 99999988766521 2245899999742 489999999
Q ss_pred HHHHHHHH
Q 012104 410 EFLHRAVT 417 (471)
Q Consensus 410 ~~i~~~l~ 417 (471)
+.|.++++
T Consensus 366 ~~l~~~l~ 373 (376)
T 3ezs_A 366 EIIETYRE 373 (376)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99988765
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.94 E-value=8.6e-25 Score=221.20 Aligned_cols=321 Identities=16% Similarity=0.104 Sum_probs=215.1
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--CC
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNR-YYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r-~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~p 120 (471)
+|.|++++...+.+... +..+.+ .|+..+...++ ++.+++++|.+. .|.++||+.++.+++.++. +|
T Consensus 62 ~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l----~~~la~~~~~~~-----~i~~~sG~~a~~~~~~~l~~~~~ 131 (401)
T 2bwn_A 62 HPVVLAAMHEALEAVGA-GSGGTRNISGTTAYHRRL----EAEIAGLHQKEA-----ALVFSSAYNANDATLSTLRVLFP 131 (401)
T ss_dssp CHHHHHHHHHHHHHHCS-CCCSBTTTBCCBHHHHHH----HHHHHHHTTCSE-----EEEESCHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC-CCCCcCcccCChHHHHHH----HHHHHHHhCCCc-----EEEECCcHHHHHHHHHHHhcCCC
Confidence 67899999887754221 111111 23333344444 467888999743 4666899998888887763 69
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh---CCCcEEEEc--CCCCCcc
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD---FRPKLIICG--GSAYPRD 195 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~---~~pklIi~~--~s~~g~~ 195 (471)
||+|++.++.|+++.. .+...|. +++.++.+ |++++++++.. .++++|++. +|++|..
T Consensus 132 gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~------d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~ 194 (401)
T 2bwn_A 132 GLIIYSDSLNHASMIE---------GIKRNAG--PKRIFRHN------DVAHLRELIAADDPAAPKLIAFESVYSMDGDF 194 (401)
T ss_dssp TCEEEEETTCCHHHHH---------HHHHSCC--CEEEECTT------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCB
T ss_pred CCEEEECchhhHHHHH---------HHHHcCC--eEEEEcCC------CHHHHHHHHHhhccCCceEEEEecCcCCCCCc
Confidence 9999999988865532 1222343 44444322 78999998864 367877754 6889999
Q ss_pred ccHHHHHHHHHHhCCEEEEeccccchhhcc-ccC-C--CCC-CCccEEEeCCCCcCCCCCeEEEEeeCCCCCCCCCCCCC
Q 012104 196 WDYARFRAVADKCGALLLCDMAHISGLVAA-QEA-A--NPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEG 270 (471)
Q Consensus 196 ~d~~~i~~ia~~~g~~livD~a~~~glv~~-g~~-~--~p~-~~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i 270 (471)
.|+++|+++|+++|+++++|++|..|.... |.. . ..+ +..|++++|++|++.+ .||++++++
T Consensus 195 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~-~GG~~~~~~------------ 261 (401)
T 2bwn_A 195 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGV-FGGYIAASA------------ 261 (401)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCS-CCEEEEECH------------
T ss_pred CCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccC-CCCEEecCH------------
Confidence 999999999999999999999998665321 110 0 011 2358999999999854 468988875
Q ss_pred cccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEE
Q 012104 271 AVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLW 348 (471)
Q Consensus 271 ~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v 348 (471)
++.+.+.... +....+++. ..++++..+++.....++++..+++.++++++.+.|++.|++++. +. ++++++
T Consensus 262 ---~~~~~l~~~~~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~-~~~~~~ 335 (401)
T 2bwn_A 262 ---RMVDAVRSYAPGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID-HG-SHIVPV 335 (401)
T ss_dssp ---HHHHHHHHHCHHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CS-SSCEEE
T ss_pred ---HHHHHHHHhCcCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccC-CC-CCeEEE
Confidence 4444443211 111123333 555666667877665556788888999999999999887887753 22 347788
Q ss_pred EccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 349 DLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 349 ~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
++.. +.+..++.+.| +++||.+.++..|+. +...+.+||+++..+ +++|++++.+.|.++++
T Consensus 336 ~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~~~--~~~~~~iRis~~~~~----t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 336 VIGD-PVHTKAVSDMLLSDYGVYVQPINFPTV--PRGTERLRFTPSPVH----DLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp ECCC-HHHHHHHHHHHHHHHCEECCEECTTTS--CTTCCEEEECCCTTS----CHHHHHHHHHHHHHHC-
T ss_pred EeCC-hHHHHHHHHHHHhcCCEEEeecCCCCC--CCCCceEEEEeeCCC----CHHHHHHHHHHHHHHHH
Confidence 7743 33456677777 588999987654432 112358999986543 48999999999988764
No 97
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.94 E-value=9.5e-25 Score=223.08 Aligned_cols=350 Identities=17% Similarity=0.163 Sum_probs=214.5
Q ss_pred CCeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 32 RGIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 32 ~~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
+.+.|..+. ...++.|++++...+.+.+ +||...|..+....+.++ ..++++++++|++.+ ..+.+++|++|+
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~~~la~~~g~~~~---~v~~~~g~t~a~ 91 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSSYVAGRKAKDIIN-TARASLAKMIGGKPQ---DIIFTSGGTESN 91 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCSSHHHHHHHHHHH-HHHHHHHHHHTCCGG---GEEEESCHHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccCcHHHHHHHHHHH-HHHHHHHHHcCCCcC---eEEEeCChHHHH
Confidence 445665444 4578999999988876533 566654433322223333 456889999998653 234466678999
Q ss_pred HHHHHHhc--------CCCCEEEEeCCCCCCcc-------cccccccCCccce-e-ccceeEEEeeeecCCCCCCCHHHH
Q 012104 111 FAAYTAVL--------EPHDRIMGLDLPSGGHL-------THGYYTSGGKKIS-A-TSIYFESLPYKVNSSTGYIDYDKL 173 (471)
Q Consensus 111 ~~~~~all--------~pGD~Vl~~~~~~~g~~-------s~~~~~~~g~~~~-~-~g~~~~~~~~~v~~~~~~iD~~~l 173 (471)
.+++.+++ +|||+|++..|.|.++. +|.+.. .... . ...+.+++.++++++++.+|+++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~---~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l 168 (432)
T 3a9z_A 92 NLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIR---LPLEHLVEDQVAEVTFVPVSKVNGQVEVEDI 168 (432)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHH---HHHHHHHHTTSCEEEEECCCTTTSSCCHHHH
T ss_pred HHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHH---HHHHHHHHhcCcEEEEEecCcccCCcCHHHH
Confidence 99999886 59999999999887641 111000 0000 0 011245566666644678999999
Q ss_pred HHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhC----------CEEEEeccccchhhccccCCCCCC--CccEEE
Q 012104 174 EEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCG----------ALLLCDMAHISGLVAAQEAANPFE--YCHIVT 239 (471)
Q Consensus 174 e~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g----------~~livD~a~~~glv~~g~~~~p~~--~aDiv~ 239 (471)
++.+.. ++++|++. +|++|...|+++|.++|+++| ++|++|++|+.|. .+..+. ++|+++
T Consensus 169 ~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~-----~~~~~~~~~~d~~~ 242 (432)
T 3a9z_A 169 LAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK-----RRVDVEDLGVDFLT 242 (432)
T ss_dssp HHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT-----SCCCHHHHCCSEEE
T ss_pred HHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCC-----cccChhhcCCCEEE
Confidence 998864 68888754 688999999999999999999 9999999997542 222222 579999
Q ss_pred eCCCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC------CCCCCCCcHHHHHHHHHHHHHhccHHHHH
Q 012104 240 TTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF------PSLQGGPHNHQIGALAVALKQASTPAFKA 313 (471)
Q Consensus 240 ~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~------~~~~g~p~~~~iaa~a~al~~~~~~~~~~ 313 (471)
+|+||++ ||+.|+++++++.. ...+....+ ....++++...++++..+++... .++++
T Consensus 243 ~s~~K~~-g~~~G~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~-~~~~~ 306 (432)
T 3a9z_A 243 IVGHKFY-GPRIGALYVRGVGK--------------LTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCET 306 (432)
T ss_dssp EEGGGTT-CCSCEEEEETTBTT--------------TBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHH-HHHHH
T ss_pred EehhHhc-CCcceEEEEccccc--------------cCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHH-hhHHH
Confidence 9999986 79999999987420 111110000 01124556666667766776543 36778
Q ss_pred HHHHHHHHHHHHHHHHHcC-CceEee-CC-----CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCC-------
Q 012104 314 YAKQVKANAVALGNYLTGK-GYSLVT-GG-----TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD------- 379 (471)
Q Consensus 314 ~~~~~~~na~~l~~~L~~~-g~~i~~-~~-----~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~------- 379 (471)
..+++.+++++|.+.|++. |+++.. ++ ...+.+++.+...+.++.++.+.|. +|.+..+.....
T Consensus 307 ~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~G~~~~~~~~~~~~ 384 (432)
T 3a9z_A 307 YEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQ--TLLASVGASCHSDHEDRPS 384 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCS--SEECBSSCGGGGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhc--CeEEeccccccCCCCCCcc
Confidence 8888899999999999884 765531 11 1122444555433445666655553 666665432110
Q ss_pred -----CCC---CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 380 -----SSA---LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 380 -----~~~---~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+- ...+.+||+++..+ +++|++++.+.|.++++.
T Consensus 385 ~~l~~~g~~~~~~~~~iRis~~~~~----t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 385 PVLLSCGIPVDVARNAVRLSVGRST----TRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp HHHHHTTCCHHHHTTEEEEECCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccccCceEEEEcCCCC----CHHHHHHHHHHHHHHHHH
Confidence 000 01368999986543 489999999999888753
No 98
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=5.6e-26 Score=227.54 Aligned_cols=329 Identities=10% Similarity=0.061 Sum_probs=217.9
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
..+++..+.+..++ +++++...+.... |+ ......+++ +.+++++|.+. .+.++||++|+.
T Consensus 7 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~ 67 (374)
T 3uwc_A 7 PYSYLERQFADIEP-YLNDLREFIKTAD--------FT-LGAELEKFE----KRFAALHNAPH-----AIGVGTGTDALA 67 (374)
T ss_dssp CSCCHHHHTSSCHH-HHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHTTCSE-----EEEESCHHHHHH
T ss_pred eeeccccCCCCchH-HHHHHHHHHHcCC--------cc-cChhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHH
Confidence 34556566666667 8888877765431 11 223334444 67888999873 466889999999
Q ss_pred HHHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCC
Q 012104 112 AAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (471)
Q Consensus 112 ~~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s 190 (471)
+++.++ ++|||+|++.++.|+++.. .+...| .+++.++++ +++.+|++++++.+.+ ++++|+ ..|
T Consensus 68 ~~~~~~~~~~gd~v~~~~~~~~~~~~---------~~~~~g--~~~~~~~~~-~~~~~d~~~l~~~~~~-~~~~v~-~~n 133 (374)
T 3uwc_A 68 MSFKMLNIGAGDEVITCANTFIASVG---------AIVQAG--ATPVLVDSE-NGYVIDPEKIEAAITD-KTKAIM-PVH 133 (374)
T ss_dssp HHHHHTTCCTTCEEEEESSSCHHHHH---------HHHHTT--CEEEEECBC-TTSSBCGGGTGGGCCT-TEEEEC-CBC
T ss_pred HHHHHcCCCCCCEEEECCCccHHHHH---------HHHHcC--CEEEEEecC-CCCCcCHHHHHHhCCC-CceEEE-EeC
Confidence 999999 9999999999998876532 122334 355666666 6788999999998864 688887 556
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCC--CcCCC-CCeEEEEeeCCCCCCCCCC
Q 012104 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTH--KSLRG-PRAGMIFYRKGPKPPKKGQ 267 (471)
Q Consensus 191 ~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~--K~l~G-prgG~i~~~~~~~~~~~~~ 267 (471)
++|...|+++|+++|+++|+++++|++|+.|..+.+.... ..+|++++|+| |++.+ +.+|+++++++
T Consensus 134 ~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~--~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~-------- 203 (374)
T 3uwc_A 134 YTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVG--SWGQFACFSLHPLKNLNVWSDAGVIITHSD-------- 203 (374)
T ss_dssp GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSSSSSSCCSSCCEEEEESCH--------
T ss_pred CcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeecc--ccccEEEEeCCCCCcCCccceeEEEEeCCH--------
Confidence 8999999999999999999999999999876544322211 13699999988 99977 56899988763
Q ss_pred CCCcccchHhhhhhcCCCC-------CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC--ceEee
Q 012104 268 PEGAVYDFEDKINFAVFPS-------LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG--YSLVT 338 (471)
Q Consensus 268 ~~i~~~~l~~~i~~~~~~~-------~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g--~~i~~ 338 (471)
++.+++......+ ...+... .+.+++.++.......++++.++..++++.+.+.|.+.+ +.+..
T Consensus 204 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 276 (374)
T 3uwc_A 204 ------EYAEKLRLYRNHGLINRDVCVEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPV 276 (374)
T ss_dssp ------HHHHHHHHHTBTTEEETTEESSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCC
T ss_pred ------HHHHHHHHHHhcCccccCccccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEecc
Confidence 3444433221100 0001100 011111122222223567788888899999999998874 66532
Q ss_pred CCCC---C-eeEEEEccCCCCCHHHHHHHHhhcCeEeccCC-cCCCCCC-C----------------CCCeeEEecCCCC
Q 012104 339 GGTE---N-HLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA-VFGDSSA-L----------------APGGVRIGTPAMT 396 (471)
Q Consensus 339 ~~~~---~-~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-~----------------~~~~iRig~~~~t 396 (471)
.+.. . +.+.+.. .+..++.+.|.++||.+.++. .|....+ . ..+.+||++...
T Consensus 277 ~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~- 351 (374)
T 3uwc_A 277 RREGVYHVFHIYVLRV----KYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPY- 351 (374)
T ss_dssp CCTTEECCCSSEEEEE----TTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTT-
T ss_pred CCCCCceeeEEEEEEc----CCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCC-
Confidence 2211 1 2222322 257788999999999998764 1111110 0 016799987554
Q ss_pred CcCCCHHHHHHHHHHHHHHHHH
Q 012104 397 SRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 397 ~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++++|++++++.|.++++.
T Consensus 352 ---~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 352 ---LTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp ---SCHHHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHHh
Confidence 4589999999999998764
No 99
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.93 E-value=1.8e-26 Score=231.30 Aligned_cols=317 Identities=11% Similarity=0.015 Sum_probs=211.0
Q ss_pred CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-cCC
Q 012104 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-LEP 120 (471)
Q Consensus 42 ~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al-l~p 120 (471)
.+++++++++...+...+ | .......++| +.+++++|.+. .+.++|||+|+.+++.++ ++|
T Consensus 14 ~~~~~~~~a~~~~~~~~~--------~-~~~~~~~~l~----~~la~~~~~~~-----~i~~~sgt~al~~~l~~l~~~~ 75 (373)
T 3frk_A 14 EIEYEIKFKFEEIYKRNW--------F-ILGDEDKKFE----QEFADYCNVNY-----CIGCGNGLDALHLILKGYDIGF 75 (373)
T ss_dssp HHHHHHHHHHHHHHHHTC--------C-SSSHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHHHHCCC--------c-cCCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHcCCCC
Confidence 346788888877765432 1 1123344444 67888999874 466889999999999999 999
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHH
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYAR 200 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~ 200 (471)
||+|++++++|.+... .+...| .+++.++++++++.+|++++++++.+ ++++|+. .|++|...|+++
T Consensus 76 gd~Vi~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~-~n~~G~~~~l~~ 142 (373)
T 3frk_A 76 GDEVIVPSNTFIATAL---------AVSYTG--AKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIA-VHLYGQPADMDE 142 (373)
T ss_dssp TCEEEEETTSCTHHHH---------HHHHHS--CEEEEECEETTTTEECGGGTGGGCCT-TEEEEEE-ECCTTCCCCHHH
T ss_pred cCEEEECCCCcHHHHH---------HHHHcC--CEEEEEeccccccCcCHHHHHHhcCC-CCeEEEE-ECCCcCcccHHH
Confidence 9999999998876532 122334 46667777877789999999998864 7888874 458999999999
Q ss_pred HHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCC--CcCCC-CCeEEEEeeCCCCCCCCCCCCCcccchHh
Q 012104 201 FRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTH--KSLRG-PRAGMIFYRKGPKPPKKGQPEGAVYDFED 277 (471)
Q Consensus 201 i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~--K~l~G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~ 277 (471)
|+++|+++|++|++|++|+.|....+.... ..+|++++|+| |++.+ ++||+++++++ ++.+
T Consensus 143 i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~--------------~~~~ 206 (373)
T 3frk_A 143 IKRIAKKYNLKLIEDAAQAHGSLYKGMKVG--SLGDAAGFSFYPAKNLGSLGDGGAVVTNDK--------------DLAE 206 (373)
T ss_dssp HHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSSCEEEEESCH--------------HHHH
T ss_pred HHHHHHHcCCEEEEECCcccCCEECCEecc--ccccEEEEeCcCCCccCccceeEEEEeCCH--------------HHHH
Confidence 999999999999999999877654332211 13688888855 99977 67899988763 3444
Q ss_pred hhhhcCCCC--------CCCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCC---C-
Q 012104 278 KINFAVFPS--------LQGGP--HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTE---N- 343 (471)
Q Consensus 278 ~i~~~~~~~--------~~g~p--~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~---~- 343 (471)
++......+ ..|.+ .....++++ + .....+++..++..++++++.+.|.+.++.+...+.. +
T Consensus 207 ~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 282 (373)
T 3frk_A 207 KIKALSNYGSEKKYHHIYKGFNSRLDELQAGFL--R--VKLKYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVW 282 (373)
T ss_dssp HHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHH--H--HHHHTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCC
T ss_pred HHHHHHhcCcccCCccccccccCCCCHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceee
Confidence 333211111 01110 111222222 2 2223456777888889999999998877544221111 1
Q ss_pred eeEEEEccCCCCCHHHHHHHHhhcCeEeccCC-cCCCCCC-----------C------CCCeeEEecCCCCCcCCCHHHH
Q 012104 344 HLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA-VFGDSSA-----------L------APGGVRIGTPAMTSRGLLEKDF 405 (471)
Q Consensus 344 ~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~-~p~~~~~-----------~------~~~~iRig~~~~t~~g~~~~d~ 405 (471)
+.+.+.. .+.+++.+.|.+.||.++... .|....+ . ..+.+||++... ++++|+
T Consensus 283 ~~~~~~~----~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~----~t~~di 354 (373)
T 3frk_A 283 YTFVIRS----EKRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYG----MKNEEI 354 (373)
T ss_dssp SSEEEEE----SSHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTT----CCHHHH
T ss_pred EEEEEEe----CCHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCC----CCHHHH
Confidence 2222322 257889999999999998764 2211100 0 016799987554 458999
Q ss_pred HHHHHHHHHHHH
Q 012104 406 EQIGEFLHRAVT 417 (471)
Q Consensus 406 ~~l~~~i~~~l~ 417 (471)
+++++.|.+...
T Consensus 355 ~~~~~~l~~~~~ 366 (373)
T 3frk_A 355 EYVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999877543
No 100
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.93 E-value=3.7e-25 Score=220.75 Aligned_cols=339 Identities=12% Similarity=0.066 Sum_probs=216.4
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCC----CCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMP----GNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~----~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
..+.+.+++..+|+.|++++...+.+.+..|.. +.+ +....+..+ .+++++++++|++.+. .+.+.++||+
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~la~~~g~~~~~-~~i~~t~g~t 78 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR---GAVYEAVHN-EAQARLLALLGNPTGY-KVLFIQGGAS 78 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT---SHHHHHHHH-HHHHHHHHHTTCCSSE-EEEEESSHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCCC---cHHHHHHHH-HHHHHHHHHhCCCCCc-EEEEECCCch
Confidence 357888899889999999998877543222211 112 223333334 4678899999997521 1334456778
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC---CCCCCCHHHHHHHhhhCCCcE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS---STGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~---~~~~iD~~~le~~~~~~~pkl 184 (471)
+|+.+++.++++|||+|++.++.+.+|.... .+...| ... .+++++ .+..+|.++++ +. .++|+
T Consensus 79 ~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~-------~~~~~g-~~~--~v~~~~~~~~~~~~~~~~~~--i~-~~t~~ 145 (362)
T 2c0r_A 79 TQFAMIPMNFLKEGQTANYVMTGSWASKALK-------EAKLIG-DTH--VAASSEASNYMTLPKLQEIQ--LQ-DNAAY 145 (362)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHH-------HHHHHS-CEE--EEEECGGGTTCSCCCGGGCC--CC-TTEEE
T ss_pred HHHHHHHHhcCCCCCeEEEEecCcHhHHHHH-------HHHHhC-CeE--EEecccccccccCCCHHHcc--cC-CCcCE
Confidence 8999999999999999998875543331000 112234 344 344442 12235766654 43 46887
Q ss_pred EEEc--CCCCCcc-ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCCC
Q 012104 185 IICG--GSAYPRD-WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGP 260 (471)
Q Consensus 185 Ii~~--~s~~g~~-~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~ 260 (471)
|++. +|++|.. .|+++| +|+++++|++|..|. .+.++...|++++|+||++ ||.| |++++++++
T Consensus 146 v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~-----~~~~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~ 213 (362)
T 2c0r_A 146 LHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILS-----RPFDLNQFGLVYAGAQKNL-GPSGVTVVIVREDL 213 (362)
T ss_dssp EEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTS-----SCCCGGGCSEEEEETTTTT-CCSSCEEEEEEGGG
T ss_pred EEEeCCcCccceeccccccc------CCCEEEEEChhhccC-----CccchhHCcEEEEeccccc-cCcCcEEEEEcHHH
Confidence 7653 6789986 556655 899999999997652 2223444599999999998 6777 999998753
Q ss_pred CC-CCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHcCC-c-eE
Q 012104 261 KP-PKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKG-Y-SL 336 (471)
Q Consensus 261 ~~-~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~~L~~~g-~-~i 336 (471)
.. ..+..+.+ +++...... ....++++...++++..|++.+... ++++..++..++++++.+.|++.| + ++
T Consensus 214 ~~~l~~~~~~~--~~~~~~~~~---~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 288 (362)
T 2c0r_A 214 VAESPKHLPTM--LRYDTYVKN---NSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG 288 (362)
T ss_dssp SSSCCTTSCGG--GCHHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEE
T ss_pred HhhccccCchH--HhHHHHhhc---cCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 21 10000000 011100001 1123566777777888888765443 578888999999999999999987 6 76
Q ss_pred eeCC--CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 337 VTGG--TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 337 ~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
...+ .....+++.+.. +.+..++.+.|.+.||.+.++. .. .+++||++...+ +++|++++.+.|.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~~g~----~~---~~~iRis~~~~~----~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 289 CVDVDSRSDMNITFRLAS-EELEKEFVKASEQEGFVGLKGH----RS---VGGLRASIYNAV----PYESCEALVQFMEH 356 (362)
T ss_dssp SSCGGGBCSSEEEEECSC-HHHHHHHHHHHHHTTEESCBCC----TT---TCSEEEECCTTS----CHHHHHHHHHHHHH
T ss_pred CCChHHcCCcEEEEEcCC-cchHHHHHHHHHHCCCeeccCC----CC---CCEEEEECCCCC----CHHHHHHHHHHHHH
Confidence 4321 123456666642 3456778888999999876542 11 357999986544 38999999999988
Q ss_pred HHH
Q 012104 415 AVT 417 (471)
Q Consensus 415 ~l~ 417 (471)
+++
T Consensus 357 ~~~ 359 (362)
T 2c0r_A 357 FKR 359 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 101
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.93 E-value=2.5e-24 Score=218.80 Aligned_cols=341 Identities=18% Similarity=0.127 Sum_probs=221.1
Q ss_pred cCCeeEecCC------CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc------C--CCCCC
Q 012104 31 CRGIELIASE------NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF------H--LDPTQ 96 (471)
Q Consensus 31 ~~~i~li~s~------n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf------g--~~~~~ 96 (471)
+..|+|..+. -..++.+++++...+.+....+|+.. .....+++...+++.+.| | ++.+
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~- 105 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPT------VGSPEAREAVATWWRNSFVHKEELKSTIVKD- 105 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCT------TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCC------CCCHHHHHHHHHHHHhhhcccccCCCCCCcc-
Confidence 3467886654 23578999999887754322233221 112344433333333211 1 3332
Q ss_pred CceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHH
Q 012104 97 WGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEE 175 (471)
Q Consensus 97 ~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~ 175 (471)
..+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++++ ++.+|+++|++
T Consensus 106 --~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~---------~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~ 172 (416)
T 1bw0_A 106 --NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET---------VCKAYGI--GMHFYNCRPENDWEADLDEIRR 172 (416)
T ss_dssp --GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH---------HHHHTTC--EEEEEEEEGGGTTEECHHHHHH
T ss_pred --eEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH---------HHHHcCc--EEEEeecCcccCCCCCHHHHHH
Confidence 13445566789999999999999999999999877532 1223343 4555555543 46799999999
Q ss_pred HhhhCCCcEEE-Ec-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhcccc----CCCCCC----C-ccEEEeC
Q 012104 176 KALDFRPKLII-CG-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQE----AANPFE----Y-CHIVTTT 241 (471)
Q Consensus 176 ~~~~~~pklIi-~~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~----~~~p~~----~-aDiv~~s 241 (471)
.+.. ++++|+ ++ +||+|..+| +++|+++|+++|++||+|++|. ++.+.|. ...++. . .+++++|
T Consensus 173 ~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s 250 (416)
T 1bw0_A 173 LKDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYA-GMVFKGKDPNATFTSVADFETTVPRVILGG 250 (416)
T ss_dssp HCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTT-TCBCCSSCTTCCCCCTTSSCCSCCEEEEEE
T ss_pred Hhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEcccc-ccccCCCCCCCCccCHHHccCCCcEEEEec
Confidence 8864 567665 55 678999998 8889999999999999999998 5555443 222222 1 2478899
Q ss_pred CCCcC--CCCCeEEEEeeCC--CCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHH
Q 012104 242 THKSL--RGPRAGMIFYRKG--PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQ 317 (471)
Q Consensus 242 ~~K~l--~GprgG~i~~~~~--~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~ 317 (471)
+||++ +|.|.|+++++++ +. . .+...+..... ...+++....+++..+++.....++++..++
T Consensus 251 ~sK~~~~~Glr~G~~~~~~~~~~~---------~--~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 317 (416)
T 1bw0_A 251 TAKNLVVPGWRLGWLLYVDPHGNG---------P--SFLEGLKRVGM--LVCGPCTVVQAALGEALLNTPQEHLDQIVAK 317 (416)
T ss_dssp STTTTSCGGGCCEEEEEECTTCSC---------H--HHHHHHHHHHH--HHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred chhhCCCCCceEEEEEeeCchhhH---------H--HHHHHHHHHhc--cccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99994 6778999998763 10 0 12222221100 0123445555566666764334466788888
Q ss_pred HHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccC----CCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEe
Q 012104 318 VKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRP----LGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIG 391 (471)
Q Consensus 318 ~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~----~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig 391 (471)
+.++++.+.+.|++. |+.++. +..++++|+.+.. .+.+..++.+.| +++||.+.++..++. ++++||+
T Consensus 318 ~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----~~~iRis 391 (416)
T 1bw0_A 318 IEESAMYLYNHIGECIGLAPTM-PRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-----PGFTRLT 391 (416)
T ss_dssp HHHHHHHHHHHHTTSTTEEECC-CCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-----CCeEEEE
Confidence 999999999999987 887753 3445567777642 124667776555 789999988765541 4689999
Q ss_pred cCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 392 TPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 392 ~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+. .+++++++..+.|.++++.
T Consensus 392 ~~------~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 392 TT------RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp CC------SCHHHHHHHHHHHHHHHHH
T ss_pred ec------CCHHHHHHHHHHHHHHHHH
Confidence 82 2478888888888877754
No 102
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=4.2e-25 Score=223.64 Aligned_cols=331 Identities=15% Similarity=0.091 Sum_probs=219.1
Q ss_pred cCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 31 ~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
+..|++.++++..++.+++++...+.+. +|..+ ....++ ++.+++++|.+. .+.++||++|+
T Consensus 30 ~~~id~~~~~~~~~~~v~~a~~~~~~~~--------~y~~~-~~~~~l----~~~la~~~~~~~-----~v~~~~Gt~a~ 91 (399)
T 2oga_A 30 VPFLDLKAAYEELRAETDAAIARVLDSG--------RYLLG-PELEGF----EAEFAAYCETDH-----AVGVNSGMDAL 91 (399)
T ss_dssp BCSCCHHHHHHHTHHHHHHHHHHHHHHT--------CCSSS-HHHHHH----HHHHHHHTTSSE-----EEEESCHHHHH
T ss_pred CcccccCcCCCCCCHHHHHHHHHHHhcC--------CCCCc-hhHHHH----HHHHHHHHCCCe-----EEEecCHHHHH
Confidence 3567777777666799999998877541 12212 333344 367888999863 46678999999
Q ss_pred HHHHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcC
Q 012104 111 FAAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189 (471)
Q Consensus 111 ~~~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~ 189 (471)
..++.++ ++|||+|+++++.|.++.. .+...| .+++.++++++++.+|++++++.+.+ ++++|+. .
T Consensus 92 ~~~l~~~~~~~gd~vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~-~ 158 (399)
T 2oga_A 92 QLALRGLGIGPGDEVIVPSHTYIASWL---------AVSATG--ATPVPVEPHEDHPTLDPLLVEKAITP-RTRALLP-V 158 (399)
T ss_dssp HHHHHHTTCCTTCEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCSSSSSBCHHHHHHHCCT-TEEEECC-B
T ss_pred HHHHHHhCCCCcCEEEECCCccHHHHH---------HHHHCC--CEEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEE-e
Confidence 9999999 9999999999998876532 122334 35556666655688999999999864 6888875 4
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCC--CcCCCC-CeEEEEeeCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTH--KSLRGP-RAGMIFYRKGPKPPKK 265 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~--K~l~Gp-rgG~i~~~~~~~~~~~ 265 (471)
|++|...|+++|+++|+++|++||+|++|..|....+.. +. ..|++++|+| |++.+| ++|+++++++
T Consensus 159 n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~---~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~------ 229 (399)
T 2oga_A 159 HLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRR---IGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDP------ 229 (399)
T ss_dssp CGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEE---TTCTTCEEEEECCTTSSSCCSSCCEEEEESCH------
T ss_pred CCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCee---cccccCEEEEeCCCCccCCcCCceEEEEeCCH------
Confidence 689999999999999999999999999998664433221 22 3699999995 997553 8899998743
Q ss_pred CCCCCcccchHhhhhhcCCC-----------CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-C
Q 012104 266 GQPEGAVYDFEDKINFAVFP-----------SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-G 333 (471)
Q Consensus 266 ~~~~i~~~~l~~~i~~~~~~-----------~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g 333 (471)
++.+++...... +....++....++...+++ .++++.++..++++++.+.|.+. |
T Consensus 230 --------~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~g 296 (399)
T 2oga_A 230 --------ELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLA-----HLDSWNGRRSALAAEYLSGLAGLPG 296 (399)
T ss_dssp --------HHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHH-----THHHHHHHHHHHHHHHHHHTTTCTT
T ss_pred --------HHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCC
Confidence 444444322111 1111223333333323333 24456677778889999999876 7
Q ss_pred ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCc-CCCC-----------CCC------CCCeeEEecCCC
Q 012104 334 YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDS-----------SAL------APGGVRIGTPAM 395 (471)
Q Consensus 334 ~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-p~~~-----------~~~------~~~~iRig~~~~ 395 (471)
+++...+.....+|+.+.....+..++.+.|.+.||.+..+.. +... ... ..+.+||+++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~ 376 (399)
T 2oga_A 297 IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPH 376 (399)
T ss_dssp CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTT
T ss_pred ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCC
Confidence 7764322222222211111123677888899999999986421 1000 000 025799997554
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHH
Q 012104 396 TSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 396 t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+ +++|++++.+.|.++++.
T Consensus 377 ~----t~edi~~~~~~l~~~~~~ 395 (399)
T 2oga_A 377 L----ERPQALRVIDAVREWAER 395 (399)
T ss_dssp C----CHHHHHHHHHHHHHHHHS
T ss_pred C----CHHHHHHHHHHHHHHHHH
Confidence 3 489999999999987753
No 103
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.93 E-value=1.5e-24 Score=222.94 Aligned_cols=342 Identities=15% Similarity=0.111 Sum_probs=213.4
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc----CCCCCCCceeeecC
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF----HLDPTQWGVNVQPY 104 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf----g~~~~~~~~~v~~~ 104 (471)
++.|+|..+++. .+|.|++++...+.+... ..+...|+......++++ .+++++ +++.+ ..+.++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~--~~~~~~y~~~~g~~~lr~----~ia~~~~~g~~~~~~---~i~~t~ 139 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAGLAT--REGYSGYGAEQGQGALRE----AVASTFYGHAGRAAD---EIFISD 139 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHGGGG--SCCCCCSTTTTCCHHHHH----HHHHHHHTTTTCCGG---GEEEES
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHhhcc--ccCCCCCCCCCCcHHHHH----HHHHHHHcCCCCCHH---HEEEcc
Confidence 457888877653 578999998877754221 011112222222344543 344444 44432 224345
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccce--------eEEEeeeecCC-CCCCCHHHHHH
Q 012104 105 SGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY--------FESLPYKVNSS-TGYIDYDKLEE 175 (471)
Q Consensus 105 sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~--------~~~~~~~v~~~-~~~iD~~~le~ 175 (471)
++++++.++ .++++|||+|++.+|.|.++.. .+...|.. ++++.++++.+ +...|++++
T Consensus 140 G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 207 (449)
T 3qgu_A 140 GSKCDIARI-QMMFGSKPTVAVQDPSYPVYVD---------TSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-- 207 (449)
T ss_dssp CHHHHHHHH-HHHHCSSSCEEEEESCCTHHHH---------HHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC--
T ss_pred CHHHHHHHH-HHHhCCCCEEEEcCCCChhHHH---------HHHHcCCcccccccccceeEEEecccccCCcCChhHc--
Confidence 556677777 8899999999999999987642 11223322 12455555533 344554321
Q ss_pred HhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC------CccEEEeCCCC
Q 012104 176 KALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE------YCHIVTTTTHK 244 (471)
Q Consensus 176 ~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~------~aDiv~~s~~K 244 (471)
.++++|++ + +||+|..++ +++|+++|+++|++||+|++|. ++...+..+.++. ..++++.|+||
T Consensus 208 ----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 282 (449)
T 3qgu_A 208 ----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYA-LYISNPDCPKTIYEIPGADEVAIETCSFSK 282 (449)
T ss_dssp ----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECSG
T ss_pred ----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchH-hhhcCCCCCCCHhhccCCCCcEEEEecchh
Confidence 46888774 4 788999886 5677788999999999999998 6655543332221 34589999999
Q ss_pred cC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 012104 245 SL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANA 322 (471)
Q Consensus 245 ~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na 322 (471)
++ +|+|.|++++++++.... . ..+...+......... +++...+++...++......+.++..+++.+++
T Consensus 283 ~~g~~G~r~G~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 354 (449)
T 3qgu_A 283 YAGFTGVRLGWTVVPKALKYAN----G---EPVHADWNRVMTTCFN-GASNIVQAGGLACLQPEGLKEMNAMIKFYKENA 354 (449)
T ss_dssp GGTCTTCCCEEEECCTTCBCTT----S---CBHHHHHHHHHHHSCC-CCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccceeEEEecCHHHHhhh----h---hhHHHHHHHHhhcccC-CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 95 688999999987531100 0 0111122211111112 233333333333443311235677888889999
Q ss_pred HHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHH-HHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 323 VALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVE-KLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 323 ~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~-~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
++|.+.|++.|+++.. +..++++|+++. +.+..++. .+++++||.+.++..++. ...+++||++ .+ +
T Consensus 355 ~~l~~~L~~~g~~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~gI~v~pg~~f~~---~~~~~iRis~--~~----~ 422 (449)
T 3qgu_A 355 QILKTTFTEMGFSVYG-GDDAPYIWVGFP--GKPSWDVFAEILERCNIVTTPGSGYGP---AGEGFVRASA--FG----S 422 (449)
T ss_dssp HHHHHHHHHTTCCEEE-SSSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGCG---GGTTEEEEEC--CS----C
T ss_pred HHHHHHHHHCCCeeeC-CCCeeEEEEECC--CCCHHHHHHHHHHHCCEEEecchHhCC---CCCCeEEEEe--cC----C
Confidence 9999999999998864 345678899886 66777775 455667999998866542 2357999996 22 4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~~ 418 (471)
+++++++.+.|.++++.
T Consensus 423 ~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 423 RENILEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78999999999888764
No 104
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.93 E-value=8.7e-25 Score=235.27 Aligned_cols=304 Identities=14% Similarity=0.092 Sum_probs=209.7
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChH-HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt-~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
++++++++||++. + +..++|+ .||.+++.++++|||+|++..+.|.++.. ++ +...|. +++.++
T Consensus 178 ~e~~lA~~~gae~----~-i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~-~~-------~~l~Ga--~~v~v~ 242 (730)
T 1c4k_A 178 AEKHAARVYNADK----T-YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYN-SA-------LAMAGG--RPVYLQ 242 (730)
T ss_dssp HHHHHHHHTTCSE----E-EEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHH-HH-------TTTTCC--EEEEEC
T ss_pred HHHHHHHHHCCCc----E-EEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHH-HH-------HHHCCC--EEEEEe
Confidence 4578999999986 3 4455665 79999999999999999999988766542 10 223444 333333
Q ss_pred ecCCC----CCCCHHHH-----HHHhhhC--------CC-cEEE-EcCCCCCccccHHHHHHHHHHhCCEEEEeccccch
Q 012104 161 VNSST----GYIDYDKL-----EEKALDF--------RP-KLII-CGGSAYPRDWDYARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 161 v~~~~----~~iD~~~l-----e~~~~~~--------~p-klIi-~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~g 221 (471)
.+.++ +.+|+++| ++++.+. +| |+|+ ++.|++|.+.|+++|+++|+++|++|++|+||+.+
T Consensus 243 ~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 243 TNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp EEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCG
T ss_pred CCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccc
Confidence 22111 34688877 8888653 12 7666 45678899999999999999999999999999866
Q ss_pred hhccccC--CCCCC----Ccc----EEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCC
Q 012104 222 LVAAQEA--ANPFE----YCH----IVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGG 290 (471)
Q Consensus 222 lv~~g~~--~~p~~----~aD----iv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~ 290 (471)
+.+.+.. .+++. ++| ++++|+||+|+||++ |+++++++.. .++...- + ..+++........++
T Consensus 323 ~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l---~g~~~~i--~-~~~~~~~~~~~~sts 396 (730)
T 1c4k_A 323 EQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI---KGQLRYC--D-HKHFNNSFNLFMSTS 396 (730)
T ss_dssp GGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG---TTSTTCC--C-HHHHHHHHHHHSCSS
T ss_pred cccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhh---cCccccc--C-HHHHHHHHHHhCCCC
Confidence 5544322 13332 577 999999999999975 6777776421 0000000 1 122332211123467
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc--CCceEeeCCC---------------------------
Q 012104 291 PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG--KGYSLVTGGT--------------------------- 341 (471)
Q Consensus 291 p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~--~g~~i~~~~~--------------------------- 341 (471)
|+...++++.+|++.+..++..++.++..++++.+++.|++ .|++++.+..
T Consensus 397 p~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (730)
T 1c4k_A 397 PFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGA 476 (730)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTC
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccc
Confidence 88889999988888776544577888999999999999988 4888753211
Q ss_pred ---------CCe--e----EEEEc----------cCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCC
Q 012104 342 ---------ENH--L----VLWDL----------RPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMT 396 (471)
Q Consensus 342 ---------~~~--~----~~v~~----------~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t 396 (471)
+++ + +++.. ...|+++.++.+.|.++||.+.+. ....+|+.++
T Consensus 477 ~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~---------~~~~ir~~~s--- 544 (730)
T 1c4k_A 477 KWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS---------DLNSILFLMT--- 544 (730)
T ss_dssp TTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---------CSSEEEEECC---
T ss_pred hhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---------CCCeEEEEeC---
Confidence 111 1 45555 234678999999999999998653 1367998764
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHH
Q 012104 397 SRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 397 ~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+.++++++++.++|.++.+..
T Consensus 545 -~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 545 -PAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp -TTCCHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHhc
Confidence 3456899999999999887654
No 105
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.93 E-value=1.7e-24 Score=220.94 Aligned_cols=332 Identities=16% Similarity=0.195 Sum_probs=220.9
Q ss_pred eEecCCCCC--cHHHHHHHhhhhhccCCCCCCCCCCCCc-chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 35 ELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGG-NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 35 ~li~s~n~~--s~~v~~a~~~~l~~~~~~g~~~~r~~~g-~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
+|..+++.. ++.+++++...+...+ | +. .....+++ +.+++++|.+. .+.++||++|+.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~~---y------~~~~~~~~~l~----~~la~~~~~~~-----v~~~~ggt~al~ 81 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQW---L------SNGGPLVREFE----ERVAGLAGVRH-----AVATCNATAGLQ 81 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHTC---C------SSSCHHHHHHH----HHHHHHHTSSE-----EEEESCHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcCC---c------ccCCHHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHH
Confidence 455566544 4688998877764321 2 21 23344444 67888898763 366788899999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCC
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSA 191 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~ 191 (471)
+++.++. +||+|++.++.|.++.. .+...| .+++.++++++++.+|+++|++.+.+ ++++|++++ +
T Consensus 82 ~~l~~l~-~gd~Vlv~~~~~~~~~~---------~~~~~G--~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~ 147 (424)
T 2po3_A 82 LLAHAAG-LTGEVIMPSMTFAATPH---------ALRWIG--LTPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-L 147 (424)
T ss_dssp HHHHHHT-CCSEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-G
T ss_pred HHHHHcC-CCCEEEECCCccHHHHH---------HHHHcC--CEEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-C
Confidence 9999885 89999999999876542 122334 45666777755788999999998864 788888653 7
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCC--CcCCCCCeEEEEeeCCCCCCCCCCC
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTH--KSLRGPRAGMIFYRKGPKPPKKGQP 268 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~--K~l~GprgG~i~~~~~~~~~~~~~~ 268 (471)
+|...++++|.++|+++|++||+|++|..|+.+.+. ++. ..|++++|+| |+|+|+++|+++++++
T Consensus 148 tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~---~~~~~~di~~~S~sk~K~l~~~~~G~~v~~~~--------- 215 (424)
T 2po3_A 148 WGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGR---PAGSLGDAEVFSFHATKAVNAFEGGAVVTDDA--------- 215 (424)
T ss_dssp GGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCCSSCEEEEESCH---------
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCe---ecccccCEEEEeCCCCCCccCCCCeEEEeCCH---------
Confidence 899999999999999999999999999877765442 122 4589999988 8898899999999842
Q ss_pred CCcccchHhhhhhcCCCCC--------CCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEee
Q 012104 269 EGAVYDFEDKINFAVFPSL--------QGGP-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (471)
Q Consensus 269 ~i~~~~l~~~i~~~~~~~~--------~g~p-~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~ 338 (471)
++.+++......+. .|.+ .+..+++ ++++.. ...++++.++..++++++.+.|.+. |+++..
T Consensus 216 -----~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~a-a~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~ 287 (424)
T 2po3_A 216 -----DLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAA-AMGLTS--LDAFPEVIDRNRRNHAAYREHLADLPGVLVAD 287 (424)
T ss_dssp -----HHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECC
T ss_pred -----HHHHHHHHHHhcCccccccccccCcCCCcCHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccC
Confidence 44444432211111 1111 1112211 122322 2356778888888999999999886 888754
Q ss_pred CCC---CC-eeEEEEccC--CCCCHHHHHHHHhhcCeEeccCCcCC-CC-CCC-------CCC-------eeEEecCCCC
Q 012104 339 GGT---EN-HLVLWDLRP--LGLTGNKVEKLCDLCNITVNKNAVFG-DS-SAL-------APG-------GVRIGTPAMT 396 (471)
Q Consensus 339 ~~~---~~-~~~~v~~~~--~~~~~~~~~~~L~~~gI~v~~~~~p~-~~-~~~-------~~~-------~iRig~~~~t 396 (471)
.+. .+ +++++.+.. .+++..++.+.|.+.||.+.+...+. .. +.+ .+. .||+++..
T Consensus 288 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~-- 365 (424)
T 2po3_A 288 HDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT-- 365 (424)
T ss_dssp GGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST--
T ss_pred CCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC--
Confidence 121 12 444466542 14678889889999999998732211 00 000 012 27776433
Q ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHH
Q 012104 397 SRGLLEKDFEQIGEFLHRAVTLTLEI 422 (471)
Q Consensus 397 ~~g~~~~d~~~l~~~i~~~l~~~~~~ 422 (471)
.++++|++++++.|.++++...+.
T Consensus 366 --~~t~e~i~~~~~~L~~~~~~~~~~ 389 (424)
T 2po3_A 366 --AIGDDDIRRVADLLRLCATRGREL 389 (424)
T ss_dssp --TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHhhhHHH
Confidence 356899999999999988765544
No 106
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.93 E-value=8.1e-25 Score=222.71 Aligned_cols=350 Identities=11% Similarity=0.119 Sum_probs=219.6
Q ss_pred cccChHHHHHHHHHHH--hc---cCCeeEecCC------C-CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 012104 13 ETVDPEIHDLIEKEKR--RQ---CRGIELIASE------N-FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (471)
Q Consensus 13 ~~~d~~~~~~~~~e~~--~~---~~~i~li~s~------n-~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~ 80 (471)
...+..++.+..+-.+ ++ .+.|+|..++ + .+++.|.+++........ .+|+.. .| ...+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~y~~~---~g---~~~lr~ 87 (418)
T 3rq1_A 15 KKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEH-VGYAPI---AG---IPDFLC 87 (418)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHH-HSCCCT---TC---CHHHHH
T ss_pred CCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhccccc-CCCCCC---CC---hHHHHH
Confidence 4445566666643222 22 2568887763 2 357888888866443211 123221 11 123433
Q ss_pred HHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 81 LCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 81 ~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
...+++....+.+... ..+++.||++|+..++.++++|||+|++++|.|.++.. .+...| .+++.++
T Consensus 88 ~ia~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~---------~~~~~g--~~~~~v~ 154 (418)
T 3rq1_A 88 AAEKECFGNFRPEGHI--RSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV---------ICSDTG--RTLVTYS 154 (418)
T ss_dssp HHHHHHHGGGCCSSEE--EEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH---------HHHHTT--CEEEEEC
T ss_pred HHHHHHhcccCccccc--cEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH---------HHHHcC--CEEEEEe
Confidence 3334454555544210 13445566789999999999999999999999877642 122334 3556666
Q ss_pred ecCCCCCCCHHHHHHHhhhC---CCc-EEEEc---CCCCCccccHHHHHH---HHH------HhCCEEEEeccccchhhc
Q 012104 161 VNSSTGYIDYDKLEEKALDF---RPK-LIICG---GSAYPRDWDYARFRA---VAD------KCGALLLCDMAHISGLVA 224 (471)
Q Consensus 161 v~~~~~~iD~~~le~~~~~~---~pk-lIi~~---~s~~g~~~d~~~i~~---ia~------~~g~~livD~a~~~glv~ 224 (471)
++++++.+|++++++.+.+. +++ +|+++ +||+|..++.+++.+ +|+ ++|++||+|++|. ++.+
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~-~~~~ 233 (418)
T 3rq1_A 155 LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL-DYSG 233 (418)
T ss_dssp SBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-GGSS
T ss_pred eeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-cccC
Confidence 65556789999999998752 566 55543 589999999876665 455 8999999999995 6665
Q ss_pred cccCCCC----CC--Ccc---EEEeCCCCc--CCCCCeEEEEe---eCCCCCCCCCCCCCcccchHhhhhhcCC---CCC
Q 012104 225 AQEAANP----FE--YCH---IVTTTTHKS--LRGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVF---PSL 287 (471)
Q Consensus 225 ~g~~~~p----~~--~aD---iv~~s~~K~--l~GprgG~i~~---~~~~~~~~~~~~~i~~~~l~~~i~~~~~---~~~ 287 (471)
.+..+.+ .+ ..| ++++|+||+ ++|.|.|++++ ++ ++.+.+..... .+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 298 (418)
T 3rq1_A 234 EKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDE---------------EIADEFFEVNKSTSRAT 298 (418)
T ss_dssp CHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSH---------------HHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCH---------------HHHHHHHHHHHHHHhhc
Confidence 4321111 11 123 788999998 47889999988 44 45554433210 000
Q ss_pred CCCCcHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHH
Q 012104 288 QGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEK 362 (471)
Q Consensus 288 ~g~p~~~~iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (471)
.++++...++++..++.... ..+.++..+++.++++.+.+.|++.|+++. .+..+.++|+++. +..++.+
T Consensus 299 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~~~~~~----~~~~~~~ 373 (418)
T 3rq1_A 299 WSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML-PYRGGFFITIPTD----SANAICE 373 (418)
T ss_dssp TSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-CCCSSSEEEEECT----THHHHHH
T ss_pred cCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCceEEEEcCCC----CHHHHHH
Confidence 11233333334333442210 012234556677788888899988888875 3455667787763 5778888
Q ss_pred HHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 363 LCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 363 ~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.|.++||.+.++ .+++||++.. .++++++++.+.|.++++.
T Consensus 374 ~l~~~gi~v~~g----------~~~iRis~~~-----~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 374 ELKKEHIYVIAL----------ANGIRIAACG-----IPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp HHHHTTEECEEC----------SSEEEEEGGG-----SCHHHHTTHHHHHHHHHHH
T ss_pred HHHhCCEEEecC----------CCCeEEEEec-----CCHHHHHHHHHHHHHHHHH
Confidence 899999999764 3689999632 3589999999999888764
No 107
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.93 E-value=5.9e-25 Score=217.78 Aligned_cols=324 Identities=19% Similarity=0.169 Sum_probs=205.1
Q ss_pred CeeEecCCC-CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 33 GIELIASEN-FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 33 ~i~li~s~n-~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
.|.|..+++ +.++.+++++....... ..|+......+++ +++++++|.+. .+.++||++|+.
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~~~--------~~y~~~~~~~~l~----~~la~~~g~~~-----~~~~~~gt~a~~ 67 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEVGD--------DVYGEDPTINELE----RLAAETFGKEA-----ALFVPSGTMGNQ 67 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCCC--------GGGTCCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCCCC--------cccCCChHHHHHH----HHHHHHhCCce-----EEEecCcHHHHH
Confidence 356666654 45789999986443111 1122233344444 67888999864 466789999999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC-----CCcEEE
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLII 186 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~-----~pklIi 186 (471)
+++.++++|||+|++.+|.|++.+... ..+...|. +++.+ .+ +++.+|++++++.+.+. ++++|+
T Consensus 68 ~~~~~~~~~gd~Vl~~~~~~~~~~~~~------~~~~~~g~--~~~~v-~~-~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 68 VSIMAHTQRGDEVILEADSHIFWYEVG------AMAVLSGV--MPHPV-PG-KNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHHHHCCTTCEEEEETTCHHHHSSTT------HHHHHTCC--EEEEE-CE-ETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHhcCCCCEEEEcCcchhhhcccc------chhhccCe--EEEEe-cC-CCCccCHHHHHHHhccccccccCceEEE
Confidence 999999999999999998875432110 01122343 44444 23 35678999999998642 578887
Q ss_pred Ec--CCCC-CccccH---HHHHHHHHHhCCEEEEeccccchh-hccccCCCCCC-CccEEEeCCCCcCCCCCeEEEEeeC
Q 012104 187 CG--GSAY-PRDWDY---ARFRAVADKCGALLLCDMAHISGL-VAAQEAANPFE-YCHIVTTTTHKSLRGPRAGMIFYRK 258 (471)
Q Consensus 187 ~~--~s~~-g~~~d~---~~i~~ia~~~g~~livD~a~~~gl-v~~g~~~~p~~-~aDiv~~s~~K~l~GprgG~i~~~~ 258 (471)
+. +||+ |..+|. ++|.++|+++|++|++|++|..+. .+.+..+.++. ++|++++|+||++.+|.|++++.++
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~ 217 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDR 217 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECH
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCH
Confidence 54 6788 888765 577899999999999999986432 12222222222 6788888999999878766666665
Q ss_pred CCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHH-HH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceE
Q 012104 259 GPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNH-QI-GALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSL 336 (471)
Q Consensus 259 ~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~-~i-aa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i 336 (471)
++.+++.....+. .+++... .. ++...+++.... ..++..++++.+.+.|++.|+.+
T Consensus 218 ---------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~L~~~~~~~ 276 (347)
T 1jg8_A 218 ---------------DFIERARKARKML-GGGMRQAGVLAAAGIIALTKMVD-----RLKEDHENARFLALKLKEIGYSV 276 (347)
T ss_dssp ---------------HHHHHHHHHHHHH-TCCCSSTHHHHHHHHHHHHHSST-----THHHHHHHHHHHHHHHHHHTCBC
T ss_pred ---------------HHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCcee
Confidence 4444332211000 0111111 11 111234444321 22334567788888887777765
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
...+...+++|+++...+.+..++.+.|.++||.+.+. ..+.+||+++.. .+++|++++.+.|.+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRl~~~~~----~~~e~i~~~~~~l~~~l 343 (347)
T 1jg8_A 277 NPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV---------SDTEIRLVTHKD----VSRNDIEEALNIFEKLF 343 (347)
T ss_dssp CGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE---------ETTEEEEECCTT----SCHHHHHHHHHHHHHHH
T ss_pred ccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC---------CCCeEEEEeCCC----CCHHHHHHHHHHHHHHH
Confidence 32223455788887533567888888888899999753 136899987433 45899999999998876
Q ss_pred H
Q 012104 417 T 417 (471)
Q Consensus 417 ~ 417 (471)
+
T Consensus 344 ~ 344 (347)
T 1jg8_A 344 R 344 (347)
T ss_dssp H
T ss_pred H
Confidence 4
No 108
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=1.4e-24 Score=221.61 Aligned_cols=342 Identities=14% Similarity=0.057 Sum_probs=223.1
Q ss_pred ccCCeeEecCCC----CCcHHHHHHHhhhhhccC--CCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC---CCCCCcee
Q 012104 30 QCRGIELIASEN----FTSFAVIEALGSALTNKY--SEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL---DPTQWGVN 100 (471)
Q Consensus 30 ~~~~i~li~s~n----~~s~~v~~a~~~~l~~~~--~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~---~~~~~~~~ 100 (471)
++..|+|..+.. +.++.+.+++...+.... ..+|+.. .....+++...+++.+.+|. +.+ ..
T Consensus 42 ~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~---~v 112 (425)
T 1vp4_A 42 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTT------EGDPVLKQQILKLLERMYGITGLDED---NL 112 (425)
T ss_dssp STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCT------TCCHHHHHHHHHHHHHHHCCCSCCGG---GE
T ss_pred CCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCC------CCCHHHHHHHHHHHHhccCCCCCCcc---cE
Confidence 446788865542 246789998887764321 1123221 11234544444555555584 332 22
Q ss_pred eecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh-
Q 012104 101 VQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD- 179 (471)
Q Consensus 101 v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~- 179 (471)
+.+++|++|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.+++++ ++ +|++++++.+.+
T Consensus 113 ~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~g--~~~~~v~~~~-~~-~d~~~l~~~l~~~ 179 (425)
T 1vp4_A 113 IFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAIN---------AFRQYL--ANFVVVPLED-DG-MDLNVLERKLSEF 179 (425)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHH---------HHHTTT--CEEEEEEEET-TE-ECHHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH---------HHHHcC--CEEEEeccCC-CC-CCHHHHHHHHHhh
Confidence 434455689999999999999999999998876532 122334 3555566664 33 999999998875
Q ss_pred ------CCCcEEE-Ec--CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----CccEEEeCC
Q 012104 180 ------FRPKLII-CG--GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCHIVTTTT 242 (471)
Q Consensus 180 ------~~pklIi-~~--~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aDiv~~s~ 242 (471)
.++++|+ +. +||+|..++. ++|.++|+++|++||+|++|. ++.+.|..+.++. ..+++++|+
T Consensus 180 ~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~i~~~s~ 258 (425)
T 1vp4_A 180 DKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYG-ALRYEGETVDPIFKIGGPERVVLLNTF 258 (425)
T ss_dssp HHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSST-TCBCSSCCCCCHHHHHCTTTEEEEEES
T ss_pred hhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCc-cccCCCCCCcCHHHhCCCCCEEEEecc
Confidence 3688874 43 6889988874 577899999999999999997 5554443222331 245889999
Q ss_pred CCcCC-CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc-cHHHHHHHHHHHH
Q 012104 243 HKSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS-TPAFKAYAKQVKA 320 (471)
Q Consensus 243 ~K~l~-GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~-~~~~~~~~~~~~~ 320 (471)
||++. |.|.|++++++ ++.+.+.....+...+ ++....++...+++... ...+++..+++.+
T Consensus 259 sK~~~~G~r~G~~~~~~---------------~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 322 (425)
T 1vp4_A 259 SKVLAPGLRIGMVAGSK---------------EFIRKIVQAKQSADLC-SPAITHRLAARYLERYDLLEQLKPTIELYRR 322 (425)
T ss_dssp TTTTCGGGCEEEEECCH---------------HHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHH
T ss_pred ccccccccceEEEeeCH---------------HHHHHHHHHhhhhcCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99975 66789999986 4555544322111112 23334444445665431 2234667777788
Q ss_pred HHHHHHHHHHcC-----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCC
Q 012104 321 NAVALGNYLTGK-----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAM 395 (471)
Q Consensus 321 na~~l~~~L~~~-----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~ 395 (471)
+++.+.+.|++. |+.++. +..++++|+++.. +.+..++.+.|.+.||.+.++..++.. +...+++||++...
T Consensus 323 ~~~~l~~~L~~~~~~~~g~~~~~-~~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~g~~f~~~-~~~~~~iRis~~~~ 399 (425)
T 1vp4_A 323 KRTVMLNALEEYFSDIPGVKWVK-SEGGLFIWLTLPE-GFDTWEMFEYAKRKKVFYVPGRVFKVY-DEPSPSMRLSFCLP 399 (425)
T ss_dssp HHHHHHHHHHHHSTTSTTCEECC-CSBSSEEEEECCT-TCCTTTTHHHHHHHTEECEEGGGGCTT-CCCCSEEEEECSSS
T ss_pred HHHHHHHHHHHhCCCCCceEEec-CCccEEEEEEcCC-CCCHHHHHHHHHHCCCEEECchhhcCC-CCCCCeEEEEeCCC
Confidence 899999999874 687753 4456678888853 456667777777779999887654321 12357899998542
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHH
Q 012104 396 TSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 396 t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++++++++.+.|.++++.
T Consensus 400 -----~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 400 -----PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHH
Confidence 479999999999888764
No 109
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.93 E-value=4.1e-25 Score=219.85 Aligned_cols=342 Identities=12% Similarity=0.035 Sum_probs=224.4
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCC-CCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNR-YYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r-~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
..+++.|++..++++|++++...+.+.++.|....+ .+.+.++.+.+| .+++.+++++|++..+ .+.+.+.|||.++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~-~~r~~la~ll~~~~~~-~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHF-GAQEKAKKLYELNDDY-EVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHH-HHHHHHHHHHTCCTTE-EEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc-eEEEEcCcHHHHH
Confidence 567899999999999999999888765543321100 122456666676 4789999999996421 1322267788999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCC-CCHHHHHHHhhhCCCcEEEEcC
Q 012104 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGY-IDYDKLEEKALDFRPKLIICGG 189 (471)
Q Consensus 111 ~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~-iD~~~le~~~~~~~pklIi~~~ 189 (471)
.+++.+++ +||+++...-. +++|.+.. .....| +++..++++.+... ++++. + +. .++++|.+.+
T Consensus 83 n~~~~~~~-~~~~~~~i~~~---~~~~~~~~----~a~~~G--~~v~~~~~~~~g~~~~~~~~-~--l~-~~t~lv~~~~ 148 (361)
T 3m5u_A 83 AMIPMNLA-LNGVCEYANTG---VWTKKAIK----EAQILG--VNVKTVASSEESNFDHIPRV-E--FS-DNADYAYICS 148 (361)
T ss_dssp HHHHHHHC-CSSCEEEEECS---HHHHHHHH----HHHHTT--CCEEEEEECTTTTSCSCCCC-C--CC-TTSSEEEEES
T ss_pred HHHHHhcC-CCCeEEEEeCC---HHHHHHHH----HHHHcC--CceEEEecccCcCCCcCChh-h--cC-CCCCEEEEeC
Confidence 99999999 89977544322 33332211 111223 34455555643211 56665 4 54 4788887654
Q ss_pred --CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCCCCC-CCC
Q 012104 190 --SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKK 265 (471)
Q Consensus 190 --s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~-~~~ 265 (471)
+.+|..+|. |++ +|+++++|++|++|. .|..+..+|++++|.||++ ||.| |+++.+++... ..+
T Consensus 149 ~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~-----~~id~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 149 NNTIYGTQYQN-----YPK-TKTPLIVDASSDFFS-----RKVDFSNIALFYGGVQKNA-GISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EETTTTEECSS-----CCC-CSSCEEEECGGGTTS-----SCCCCTTEEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHT
T ss_pred CCCCcceeCCc-----ccc-cCCEEEEEcccccCC-----CCCCcccCCEEEEechhcc-CCCccEEEEEcHHHHhhhcC
Confidence 456887662 454 499999999998663 3445557899999999999 8998 88888764210 000
Q ss_pred -CCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHcCC-c-eEeeCCC
Q 012104 266 -GQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKG-Y-SLVTGGT 341 (471)
Q Consensus 266 -~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~~L~~~g-~-~i~~~~~ 341 (471)
..+.. .++...... ....++|+...+.++..|++.+.+. ++++..++..+.++++.+.|++.+ + .+...+.
T Consensus 217 ~~~p~~--~~~~~~~~~---~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~ 291 (361)
T 3m5u_A 217 KQIPSM--LNYLTHAEN---QSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKK 291 (361)
T ss_dssp CCCCGG--GCHHHHHHT---TTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGG
T ss_pred CCCCce--eehHHHhhc---CCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHH
Confidence 00000 011111111 2234689999999999999988776 688999999999999999999886 5 5532211
Q ss_pred --CCeeEEEEccC-CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 342 --ENHLVLWDLRP-LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 342 --~~~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
..+++.+.+.. .+++ .++...|+++||.+..+.- ..+++|+|+...+ +++|++++.++|.++.+.
T Consensus 292 ~rs~~ivsf~~~~~~~~~-~~~~~~L~~~gI~~~~g~~-------~~g~iRiS~~~~~----t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 292 DRSLMNVSFNIAKNKDLE-PLFVKEAEEAGMIGLKGHR-------ILGGIRASIYNAL----NLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp GBCSSEEEEEESSCTTHH-HHHHHHHHHTTEECCBCCT-------TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred HcCCeEEEEECCCchhhh-HHHHHHHHHCCCEEecCCC-------ccCeEEEEccCCC----CHHHHHHHHHHHHHHHHh
Confidence 12345555543 2344 4677889999999876421 1256999986554 489999999999987654
No 110
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.93 E-value=4.4e-24 Score=218.03 Aligned_cols=341 Identities=15% Similarity=0.086 Sum_probs=216.1
Q ss_pred CCeeEecCCCCC-cHHHHHHHhhhhhcc----------CCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC----CCCCC
Q 012104 32 RGIELIASENFT-SFAVIEALGSALTNK----------YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH----LDPTQ 96 (471)
Q Consensus 32 ~~i~li~s~n~~-s~~v~~a~~~~l~~~----------~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg----~~~~~ 96 (471)
..|.|..++|.. ++.+.+++....... ...+|+.. .....+++...+++.+.+| ++.+.
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~~ 110 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDY------HGLPEFRKAIAKFMEKTRGGRVRFDPER 110 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCT------TCCHHHHHHHHHHHHHHTTTCSCCCTTS
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCChhh
Confidence 356777778765 567777776322100 00112211 1123455444455555555 43431
Q ss_pred CceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHH
Q 012104 97 WGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEE 175 (471)
Q Consensus 97 ~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~ 175 (471)
.+.++++++|+.+++.++++|||+|++.+|.|.++.. .. ....| .+++.++.+++ ++.+|++++++
T Consensus 111 ---i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~-~~-------~~~~g--~~~~~v~~~~~~~~~~d~~~l~~ 177 (428)
T 1iay_A 111 ---VVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR-DL-------RWRTG--VQLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp ---CEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH-HT-------TTTTC--CEEEEECCCTTTTTCCCHHHHHH
T ss_pred ---EEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH-HH-------HHhcC--CEEEEeecCCccCCcCCHHHHHH
Confidence 2334455689999999999999999999999887532 10 11234 34555555532 45789999999
Q ss_pred Hhhh-----CCCcEEE-Ec-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC-C---C-------
Q 012104 176 KALD-----FRPKLII-CG-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E---Y------- 234 (471)
Q Consensus 176 ~~~~-----~~pklIi-~~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~-~---~------- 234 (471)
.+++ .++++|+ ++ +||+|..+| +++|.++|+++|++||+|++|. ++.+.+....++ . .
T Consensus 178 ~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYA-ATVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTG-GGCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccc-ccccCCCCccCHHHhccccccccCC
Confidence 8864 2678665 55 678999999 8888999999999999999997 444443211111 1 2
Q ss_pred cc--EEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHh--cc
Q 012104 235 CH--IVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA--ST 308 (471)
Q Consensus 235 aD--iv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~--~~ 308 (471)
.| +++.|+||++ +|.|.|+++++++ ++.+.+.....++ +.+....++...++... ..
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~ 319 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFND--------------DVVNCARKMSSFG---LVSTQTQYFLAAMLSDEKFVD 319 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCH--------------HHHHHHHHHHTTS---CCCHHHHHHHHHHTTCHHHHH
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCH--------------HHHHHHHHHHhcc---cCCHHHHHHHHHHhcChHHHH
Confidence 57 8899999996 7888999998542 4555554432221 22333333333344321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCC-----CCHHHHHHHHhh-cCeEeccCCcCCCCCC
Q 012104 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLG-----LTGNKVEKLCDL-CNITVNKNAVFGDSSA 382 (471)
Q Consensus 309 ~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~-----~~~~~~~~~L~~-~gI~v~~~~~p~~~~~ 382 (471)
..+++..+++.++++.|.+.|++.|++++. +..+.++|+++.... .+..++.+.|.+ +||.+.++..++..
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~-- 396 (428)
T 1iay_A 320 NFLRESAMRLGKRHKHFTNGLEVVGIKCLK-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ-- 396 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccC-CCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC--
Confidence 134667777888899999999988887743 335667888875321 123456666655 59999887544321
Q ss_pred CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 383 LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 383 ~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.++++||+++. .++++++++.+.|.++++.
T Consensus 397 -~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 397 -EPGWFRVCFAN-----MDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp -SSSEEEEECSS-----SCHHHHHHHHHHHHHHHHT
T ss_pred -CCCEEEEEEec-----CCHHHHHHHHHHHHHHHhc
Confidence 24689999852 3589999999999888753
No 111
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.93 E-value=2.8e-24 Score=220.04 Aligned_cols=345 Identities=15% Similarity=0.070 Sum_probs=216.2
Q ss_pred CeeEecCCCCC-cHHHHHHHhhhhhccCC--CCCCCC---CCCCcchhHHHHHHHHHHHHHHhcC----CCCCCCceeee
Q 012104 33 GIELIASENFT-SFAVIEALGSALTNKYS--EGMPGN---RYYGGNEFIDEIENLCRSRALQTFH----LDPTQWGVNVQ 102 (471)
Q Consensus 33 ~i~li~s~n~~-s~~v~~a~~~~l~~~~~--~g~~~~---r~~~g~~~~~~lE~~~~~~~~~lfg----~~~~~~~~~v~ 102 (471)
.|+|..++|.. .+.+.+++......... +|..+. ..|+......++++...+++.+.++ ++.+ ..+.
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~---~v~~ 116 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN---HLVL 116 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG---GEEE
T ss_pred eEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH---HEEE
Confidence 56887788765 56666666544321110 010000 0122222234555444444444433 3332 2344
Q ss_pred cCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccce-eccceeEEEeeeecCC-CCCCCHHHHHHHhhh-
Q 012104 103 PYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS-ATSIYFESLPYKVNSS-TGYIDYDKLEEKALD- 179 (471)
Q Consensus 103 ~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~-~~g~~~~~~~~~v~~~-~~~iD~~~le~~~~~- 179 (471)
++||++||.+++.++++|||+|++.+|.|+++.. .+. ..| .+++.++.+++ ++.+|+++|++.+.+
T Consensus 117 ~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~---------~~~~~~g--~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 185 (435)
T 3piu_A 117 TAGATSANETFIFCLADPGEAVLIPTPYYPGFDR---------DLKWRTG--VEIVPIHCTSSNGFQITETALEEAYQEA 185 (435)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH---------HTTTTTC--CEEEEEECCGGGTSCCCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhcCCCCeEEECCCccccHHH---------HHHHhcC--CEEEEeeCCCccCCcCCHHHHHHHHHHH
Confidence 6677789999999999999999999999887642 111 234 35555555532 356899999999875
Q ss_pred ----CCCcEEE-Ec-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCCC----C---------cc-
Q 012104 180 ----FRPKLII-CG-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----Y---------CH- 236 (471)
Q Consensus 180 ----~~pklIi-~~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~----~---------aD- 236 (471)
.++++|+ ++ +||+|..++. ++|+++|+++|++||+|++|. ++.+.+....++. . .|
T Consensus 186 ~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 264 (435)
T 3piu_A 186 EKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYS-GTAFSSPSFISVMEVLKDRNCDENSEVWQR 264 (435)
T ss_dssp HHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCSSSCCCCHHHHHHC-------CGGGG
T ss_pred HhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccc-ccccCCCCCcCHHHhccccccccccCCCCC
Confidence 2678765 44 7889988776 567788999999999999997 5455443222211 1 22
Q ss_pred -EEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc--cHHH
Q 012104 237 -IVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS--TPAF 311 (471)
Q Consensus 237 -iv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~--~~~~ 311 (471)
++++|+||++ +|.|.|+++++++ .+.+.+......+ +.+....++++.++.... ...+
T Consensus 265 ~i~i~s~sK~~g~~G~r~G~~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ 327 (435)
T 3piu_A 265 VHVVYSLSKDLGLPGFRVGAIYSNDD--------------MVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYI 327 (435)
T ss_dssp EEEEEESSSSSCCGGGCEEEEEESCH--------------HHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred EEEEEeeecccCCCceeEEEEEeCCH--------------HHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHH
Confidence 8899999996 6788999998653 4555444332222 122223333333343211 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCC-----CHHHHHHHH-hhcCeEeccCCcCCCCCCCCC
Q 012104 312 KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGL-----TGNKVEKLC-DLCNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 312 ~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~-----~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~ 385 (471)
++..+++.++++.+.+.|++.|++++. +..++++|+++..... +..++.+.| +++||.+.++..++. ..+
T Consensus 328 ~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---~~~ 403 (435)
T 3piu_A 328 AENHKRLKQRQKKLVSGLQKSGISCLN-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHC---TEP 403 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEECC-CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---SST
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccC-CCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCC---CCC
Confidence 566777888889999999988998753 4455788888854210 233554444 556999998765542 235
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+.+||+++.. ++++++++.+.|.++++.
T Consensus 404 ~~iRi~~~~~-----~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 404 GWFRVCFANL-----PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp TEEEEECSSS-----CHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeCC-----CHHHHHHHHHHHHHHHHH
Confidence 7999998433 478999999999888764
No 112
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.93 E-value=6.4e-24 Score=221.76 Aligned_cols=311 Identities=16% Similarity=0.105 Sum_probs=207.3
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--------------CCCEEEEeCCCCCCcccc
Q 012104 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--------------PHDRIMGLDLPSGGHLTH 137 (471)
Q Consensus 72 ~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--------------pGD~Vl~~~~~~~g~~s~ 137 (471)
.....++|+.+.+++++++|.+.+.- ..+.+++||.||..++.++.. |+++|++.++.|.++.
T Consensus 130 ~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~-- 206 (511)
T 3vp6_A 130 APVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIK-- 206 (511)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHH--
T ss_pred CchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHH--
Confidence 35667889889999999999984211 346678899999988887654 6789999987765442
Q ss_pred cccccCCccceecccee-EEEeeeecCCCCCCCHHHHHHHhhhCC-----CcEEEEc--CCCCCccccHHHHHHHHHHhC
Q 012104 138 GYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICG--GSAYPRDWDYARFRAVADKCG 209 (471)
Q Consensus 138 ~~~~~~g~~~~~~g~~~-~~~~~~v~~~~~~iD~~~le~~~~~~~-----pklIi~~--~s~~g~~~d~~~i~~ia~~~g 209 (471)
+.+...|.+. +++.++++ +++.+|+++|++++.+.+ |++|++. +|++|.+.|+++|+++|+++|
T Consensus 207 -------~~~~~~g~g~~~~~~v~~d-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~ 278 (511)
T 3vp6_A 207 -------KAGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYN 278 (511)
T ss_dssp -------HHHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHT
T ss_pred -------HHHHHcCCCCCcEEEeecC-CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcC
Confidence 1233445422 45556666 468999999999997532 7777643 778999999999999999999
Q ss_pred CEEEEeccccchhhccccCCCC---CCCccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCCCcccchHhhhhh----
Q 012104 210 ALLLCDMAHISGLVAAQEAANP---FEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINF---- 281 (471)
Q Consensus 210 ~~livD~a~~~glv~~g~~~~p---~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~---- 281 (471)
+|+++|++|+.|.......... +.++|++++++||||.+|.+ |+++++++ .+......
T Consensus 279 ~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~--------------~~~~~~~~~~~~ 344 (511)
T 3vp6_A 279 LWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK--------------GILQGCNQMHAS 344 (511)
T ss_dssp CEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST--------------THHHHHHCCCCT
T ss_pred CEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCH--------------HHHHHHhccCCc
Confidence 9999999998766543222211 23679999999999888855 88888764 22111100
Q ss_pred cCC--------------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeC-CCCCee
Q 012104 282 AVF--------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTG-GTENHL 345 (471)
Q Consensus 282 ~~~--------------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~-~~~~~~ 345 (471)
..+ ...+++... .+.++..+++.+..+++++..++..++++++++.|++. |++++.. .....+
T Consensus 345 yl~~~~~~~~~~~~~~~~~~~~~r~~-~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~ 423 (511)
T 3vp6_A 345 YLFQQDKHYDVSYDTGDKAIQCGRHV-DIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN 423 (511)
T ss_dssp TTCCSSCSSCGGGCCGGGSSCSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSC
T ss_pred cccCcccccccccCccCCCCCCCCch-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE
Confidence 000 011112111 23445556666656688999999999999999999987 9998752 122334
Q ss_pred EEEEccCCCCC---------------HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEec-CCCCCcCCCHHHHHHHH
Q 012104 346 VLWDLRPLGLT---------------GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGT-PAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 346 ~~v~~~~~~~~---------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~t~~g~~~~d~~~l~ 409 (471)
+++.+.+.+++ ..++.+.|.+.|+.+.. ..|.. ...+.+|+++ +.. .+++|++++.
T Consensus 424 v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~-~~~~~---~~~~~lRi~~~~~~----~t~~di~~ll 495 (511)
T 3vp6_A 424 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVG-YQPQG---DKANFFRMVISNPA----ATQSDIDFLI 495 (511)
T ss_dssp EEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEE-EEEET---TEEEEEEECCCCTT----CCHHHHHHHH
T ss_pred EEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-EEEeC---CceEEEEEEecCCC----CCHHHHHHHH
Confidence 55554443321 23567777777865432 11211 1124699987 233 3489999999
Q ss_pred HHHHHHH
Q 012104 410 EFLHRAV 416 (471)
Q Consensus 410 ~~i~~~l 416 (471)
+.|.++-
T Consensus 496 ~~i~~~~ 502 (511)
T 3vp6_A 496 EEIERLG 502 (511)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
No 113
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.93 E-value=1.5e-23 Score=217.06 Aligned_cols=327 Identities=12% Similarity=0.083 Sum_probs=212.5
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh----c
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV----L 118 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al----l 118 (471)
..|.+.+++.+.+++ |. -|.... ..+...+++...++++++++|++. +.+++++|++|+.+++.++ +
T Consensus 78 ~~p~v~~~~~~~~~~-~~-~~~~~~---~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al~~~~~~~~ 148 (474)
T 1wyu_B 78 YNPKLHEEAARLFAD-LH-PYQDPR---TAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGILIIRAYHE 148 (474)
T ss_dssp CCCHHHHHHHHTTSS-CC-TTSCGG---GCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cC-CCCchh---hChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHHHHHHHHHH
Confidence 346777777655322 21 111100 112233455556788999999875 3456788889998766554 4
Q ss_pred CCCC-----EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc-CCCC
Q 012104 119 EPHD-----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-GSAY 192 (471)
Q Consensus 119 ~pGD-----~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~-~s~~ 192 (471)
++|| +|+++++.|+.+.. .+...| ++++.++++ +++.+|+++|++++.+ ++++|++. +|++
T Consensus 149 ~~Gd~~~r~~Vlv~~~~h~~~~~---------~~~~~G--~~vv~v~~~-~~~~~d~~~L~~~i~~-~t~~v~~~~pn~~ 215 (474)
T 1wyu_B 149 DRGEGRTRRVVLVPDSAHGSNPA---------TASMAG--YQVREIPSG-PEGEVDLEALKRELGP-HVAALMLTNPNTL 215 (474)
T ss_dssp HTTCTTTCCEEEEETTSCTHHHH---------HHHHTT--CEEEEECBC-TTSSBCHHHHHHHCST-TEEEEEECSSCTT
T ss_pred hcCCccCCCEEEEeCCcChhhHH---------HHHHCC--CEEEEecCC-CCCCcCHHHHHHhhCC-CceEEEEECCCCC
Confidence 6898 99999988876531 223344 355666666 4688999999999864 67877754 6778
Q ss_pred Ccc-ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCCCcCCCC------CeEEEEeeCCCCCCC
Q 012104 193 PRD-WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGP------RAGMIFYRKGPKPPK 264 (471)
Q Consensus 193 g~~-~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~K~l~Gp------rgG~i~~~~~~~~~~ 264 (471)
|.. .++++|+++|+++|+++++|++|..+.. |.. .+.. ++|++++|+||++.+| +.|++++++++
T Consensus 216 G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~--g~~-~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l---- 288 (474)
T 1wyu_B 216 GLFERRILEISRLCKEAGVQLYYDGANLNAIM--GWA-RPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL---- 288 (474)
T ss_dssp SCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTT--TTC-CHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG----
T ss_pred cccCCCHHHHHHHHHHcCCEEEEeCchhhhhc--cCC-CcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHH----
Confidence 987 5999999999999999999999975542 111 1212 6899999999997654 67999998742
Q ss_pred CCCCCCcccchHhhhhhc-------------CCC-----CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 012104 265 KGQPEGAVYDFEDKINFA-------------VFP-----SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (471)
Q Consensus 265 ~~~~~i~~~~l~~~i~~~-------------~~~-----~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~ 326 (471)
.+.+... ..+ ...++++...+++...++.....+++++..++..+++++|.
T Consensus 289 -----------~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~ 357 (474)
T 1wyu_B 289 -----------APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLK 357 (474)
T ss_dssp -----------GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222100 000 00112222222222233333323467777888999999999
Q ss_pred HHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHH
Q 012104 327 NYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFE 406 (471)
Q Consensus 327 ~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~ 406 (471)
+.|++.|+++..++...+.+++++ +.+.+..++.+.|.+.||.+.....| ....+.+||++...+ ++++++
T Consensus 358 ~~L~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~L~~~Gi~~~~~~~~----~~~~~~lRis~~~~~----t~e~id 428 (474)
T 1wyu_B 358 ELLKEKGYRVPYDGPSMHEFVAQP-PEGFRALDLAKGLLELGFHPPTVYFP----LIVKEALMVEPTETE----AKETLE 428 (474)
T ss_dssp HHHHHTTCBCSSCSSCCSCEEEBC-STTCCHHHHHHHHHHTTCCCCEESCS----TTSTTCEEECCCTTS----CHHHHH
T ss_pred HHHhhcCcEecCCCCcceEEEEEc-CCCCCHHHHHHHHHHCCccccccccc----cccCCEEEEEeecCC----CHHHHH
Confidence 999988888743332333356677 44667888988888889986322111 112478999985433 479999
Q ss_pred HHHHHHHHHHHH
Q 012104 407 QIGEFLHRAVTL 418 (471)
Q Consensus 407 ~l~~~i~~~l~~ 418 (471)
++.+.|.++++.
T Consensus 429 ~~~~~L~~~~~~ 440 (474)
T 1wyu_B 429 AFAEAMGALLKK 440 (474)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
No 114
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.93 E-value=5.8e-25 Score=219.98 Aligned_cols=323 Identities=12% Similarity=0.074 Sum_probs=210.1
Q ss_pred CCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-
Q 012104 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV- 117 (471)
Q Consensus 39 s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al- 117 (471)
+...++|.|++++...+.+.+ .+|+ .....+ ++.+++++|++. .+.++||++|+.+++.++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~--~~~~-------~~~~~l----~~~la~~~~~~~-----v~~~~ggt~al~~~~~~~~ 68 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ--LTQG-------KRSLLF----EEALCEFLGVKH-----ALVFNSATSALLTLYRNFS 68 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC--CSSS-------HHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHcCc--ccCC-------hHHHHH----HHHHHHHhCCCe-----EEEeCCHHHHHHHHHHHhc
Confidence 456789999999988875432 1221 223333 467888999873 356788999999999999
Q ss_pred --cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCcc
Q 012104 118 --LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 195 (471)
Q Consensus 118 --l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~ 195 (471)
++|||+|+++++.|.++.. .+...| .+++.++++++ +.+|++++++.+.+ ++++|++.+. +|..
T Consensus 69 ~~~~~gd~Vl~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~-~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~ 134 (375)
T 2fnu_A 69 EFSADRNEIITTPISFVATAN---------MLLESG--YTPVFAGIKND-GNIDELALEKLINE-RTKAIVSVDY-AGKS 134 (375)
T ss_dssp CCCTTSCEEEECSSSCTHHHH---------HHHHTT--CEEEECCBCTT-SSBCGGGSGGGCCT-TEEEEEEECG-GGCC
T ss_pred ccCCCCCEEEECCCccHhHHH---------HHHHCC--CEEEEeccCCC-CCCCHHHHHhhcCc-CceEEEEeCC-cCCc
Confidence 9999999999998876542 122334 45666677644 48999999988864 6787665433 8999
Q ss_pred ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEE--eCCCCcCCCCCeEEEEe-eCCCCCCCCCCCCCc
Q 012104 196 WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVT--TTTHKSLRGPRAGMIFY-RKGPKPPKKGQPEGA 271 (471)
Q Consensus 196 ~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~--~s~~K~l~GprgG~i~~-~~~~~~~~~~~~~i~ 271 (471)
.|+++|.++|+++|++|++|++|..|....+. ++. ..|+++ +|.||++ ||..|++++ +++
T Consensus 135 ~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~~~i~~~s~s~~K~~-~~g~g~~~~~~~~------------ 198 (375)
T 2fnu_A 135 VEVESVQKLCKKHSLSFLSDSSHALGSEYQNK---KVGGFALASVFSFHAIKPI-TTAEGGAVVTNDS------------ 198 (375)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSS-CCSSCEEEEESCH------------
T ss_pred cCHHHHHHHHHHcCCEEEEECccccCCeECCe---eccccCCeEEEeCCCCCCc-cccCceEEEeCCH------------
Confidence 99999999999999999999999866433221 122 235554 4555998 553355555 432
Q ss_pred ccchHhhhhhcCCCCC------------CCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEe
Q 012104 272 VYDFEDKINFAVFPSL------------QGGP-HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLV 337 (471)
Q Consensus 272 ~~~l~~~i~~~~~~~~------------~g~p-~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~ 337 (471)
++.+++......+. .+.+ ....+++ +.++... .++++..++..++++++.+.|++. |+++.
T Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 273 (375)
T 2fnu_A 199 --ELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQS-ALGLSQL--KKAPFLMQKREEAALTYDRIFKDNPYFTPL 273 (375)
T ss_dssp --HHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHH-HHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred --HHHHHHHHHHhcCCccccccccccccccccCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 34444433211110 1111 1112211 1122221 256778888899999999999987 78775
Q ss_pred eC--C--CCCeeEEEEccCCCC-CHHHHHHHHhhcCeEeccCCcCCCCC-C---------C------CCCeeEEecCCCC
Q 012104 338 TG--G--TENHLVLWDLRPLGL-TGNKVEKLCDLCNITVNKNAVFGDSS-A---------L------APGGVRIGTPAMT 396 (471)
Q Consensus 338 ~~--~--~~~~~~~v~~~~~~~-~~~~~~~~L~~~gI~v~~~~~p~~~~-~---------~------~~~~iRig~~~~t 396 (471)
.. + ...+++++.+...++ +..++.+.|.++||.++....|.... . . ..+.+||++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~- 352 (375)
T 2fnu_A 274 HPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHAN- 352 (375)
T ss_dssp GGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTT-
T ss_pred CCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCC-
Confidence 32 1 123455777654334 67788888999999998432222100 0 0 125799997543
Q ss_pred CcCCCHHHHHHHHHHHHHHHHH
Q 012104 397 SRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 397 ~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+++|++++.+.|.++++.
T Consensus 353 ---~t~~~i~~~~~~l~~~~~~ 371 (375)
T 2fnu_A 353 ---LNLESVQNIAHSVLKTFES 371 (375)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHH
Confidence 3489999999999988754
No 115
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.93 E-value=1.5e-25 Score=225.04 Aligned_cols=344 Identities=11% Similarity=0.013 Sum_probs=216.4
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeee-cCChHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSGSPAN 110 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~-r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~-~~sGt~A~ 110 (471)
...+.|++..++++|++++...+.+.+..|.... ..+-+.++.+.+| .+++.+++++|++.++ -.++ +.|||.++
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~-~ar~~la~ll~~~~~~--evif~t~~~T~a~ 104 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAE-EAEQDFRDLLNIPSNY--KVLFCHGGGRGQF 104 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-----------------------CCH-HHHHHHHHHHTCCTTE--EEEEEESCTTHHH
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCc--eEEEEcCCchHHH
Confidence 4677899999999999999888766553222100 1122345555565 4688999999996421 1244 57889999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec-CCCCC-CCHHHHHHHhhhCCCcEEEEc
Q 012104 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN-SSTGY-IDYDKLEEKALDFRPKLIICG 188 (471)
Q Consensus 111 ~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~-~~~~~-iD~~~le~~~~~~~pklIi~~ 188 (471)
.+++.++++|||+|+..... +++|.+.. .....| .+. .++++ ++.+. +|++++++.+. .++++|.+.
T Consensus 105 n~ai~~l~~~gd~v~~~~~~---~~~~~~~~----~a~~~G-~v~--~v~~~~~~~G~~~~~~~~~~~l~-~~t~lV~~~ 173 (386)
T 3qm2_A 105 AGVPLNLLGDKTTADYVDAG---YWAASAIK----EAKKYC-APQ--IIDAKITVDGKRAVKPMREWQLS-DNAAYLHYC 173 (386)
T ss_dssp HHHHHHHCTTCCEEEEEESS---HHHHHHHH----HHTTTS-EEE--EEECEEEETTEEEECCGGGCCCC-TTCSCEEEC
T ss_pred HHHHHhccCCCCeEEEEeCC---HHHHHHHH----HHHHhC-CeE--EEecCcccCCCCCCchHHHhhcC-CCCcEEEEE
Confidence 99999999999999876643 33332211 111224 333 33444 11343 77788777665 478888766
Q ss_pred C--CCCCcc-ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCCCCC-C
Q 012104 189 G--SAYPRD-WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-P 263 (471)
Q Consensus 189 ~--s~~g~~-~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~-~ 263 (471)
+ +.+|.. .|+++|. +|+++++|++|++|. .|..+...|++++|.||++ ||.| |+++.+++... .
T Consensus 174 h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~-----~pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~~ 242 (386)
T 3qm2_A 174 PNETIDGIAIDETPDFG-----PEVVVTADFSSTILS-----APLDVSRYGVIYAGAQKNI-GPAGLTLVIVREDLLGKA 242 (386)
T ss_dssp SEETTTTEECCCCCCCC-----TTCCEEEECTTTTTS-----SCCCGGGCSEEEEETTTTT-CCTTEEEEEEEGGGCSCC
T ss_pred CCcCCcCEecCchhhhc-----CCCEEEEEcccccCC-----CCCCccccCEEEEeccccc-CCCccEEEEECHHHHhhh
Confidence 4 445986 7888775 799999999998763 3444555578889999999 8998 88888876421 1
Q ss_pred CCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHcCCceE-eeCC-
Q 012104 264 KKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGKGYSL-VTGG- 340 (471)
Q Consensus 264 ~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~~L~~~g~~i-~~~~- 340 (471)
.+..+.. .++...... ....++|+...+.++..|++.+.+. ++++..++..+.++++.+.|++.|+-. ...+
T Consensus 243 ~~~~p~~--~~~~~~~~~---~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 317 (386)
T 3qm2_A 243 HESCPSI--LDYTVLNDN---DSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQA 317 (386)
T ss_dssp CTTSCGG--GCHHHHHHC----------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGG
T ss_pred cccCCcH--HHHHHHhhc---CCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHH
Confidence 1111111 122211111 1223578888999999999988776 688999999999999999999887632 1111
Q ss_pred -CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 341 -TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 341 -~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
...+.+.+.+...+++ .++...|+++||.+..+.- ..+++|+|+...+ +++|++++.++|+++.+.
T Consensus 318 ~rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~-------~~~~iRiS~~~~~----t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 318 NRSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHR-------VVGGMRASIYNAM----PIEGVKALTDFMIDFERR 384 (386)
T ss_dssp GBCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCT-------TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred HcCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCC-------CcCeEEEEcCCCC----CHHHHHHHHHHHHHHHHh
Confidence 1123455555433455 5666668999999866421 1256999985554 489999999999987653
No 116
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.93 E-value=3.5e-24 Score=219.75 Aligned_cols=360 Identities=11% Similarity=-0.008 Sum_probs=214.9
Q ss_pred hccCCe-eEecCCCCCcHHHHHHHhhhhhccCCC---CC--CC----CCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCc
Q 012104 29 RQCRGI-ELIASENFTSFAVIEALGSALTNKYSE---GM--PG----NRYYGGNEFIDEIENLCRSRALQTFHLDPTQWG 98 (471)
Q Consensus 29 ~~~~~i-~li~s~n~~s~~v~~a~~~~l~~~~~~---g~--~~----~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~ 98 (471)
...+.| +|..+....+|.+.+++...+...+.. |. ++ .-.|+.......+++...+++.+.+|.....-
T Consensus 29 ~~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~- 107 (444)
T 3if2_A 29 KSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE- 107 (444)
T ss_dssp HSSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-
T ss_pred cCchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-
Confidence 335678 887776666665555544433222111 00 00 00122222234555444455555555432111
Q ss_pred eeeecCChHHHHHHHHHHhcCCCC--------------EEEEe-CCCCCCcccccccccCCccceeccceeEEEeeeecC
Q 012104 99 VNVQPYSGSPANFAAYTAVLEPHD--------------RIMGL-DLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS 163 (471)
Q Consensus 99 ~~v~~~sGt~A~~~~~~all~pGD--------------~Vl~~-~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~ 163 (471)
-.+.+++|++|+.+++.++++||| +|++. +|+|.+|..... .. -.+.+....++++++++
T Consensus 108 ~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 182 (444)
T 3if2_A 108 NIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV--EG---QHFAAVLPHIDEVTHDG 182 (444)
T ss_dssp GEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCS--SS---CCEEECCCEEEEEEETT
T ss_pred HEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhccc--cc---chhhccCceEEeccccc
Confidence 234566777899999999999998 78775 888887743110 00 01233345666666664
Q ss_pred C----CCCCCHHHHHHHhh--hCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhh---ccccCC
Q 012104 164 S----TGYIDYDKLEEKAL--DFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLV---AAQEAA 229 (471)
Q Consensus 164 ~----~~~iD~~~le~~~~--~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv---~~g~~~ 229 (471)
+ ++.+|+++|+++++ ..++++|++ + +||+|.+++ +++|+++|+++|++||+|++|...+. +.+..+
T Consensus 183 ~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 262 (444)
T 3if2_A 183 EEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHL 262 (444)
T ss_dssp EEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC
T ss_pred ccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccc
Confidence 2 24799999998742 246787765 4 788999999 77788899999999999999963211 111111
Q ss_pred CCCCCccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhcc
Q 012104 230 NPFEYCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308 (471)
Q Consensus 230 ~p~~~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~ 308 (471)
.....+++++|+||+ ++|.|.|++++++ ++.+.+.........+.+...+ ++.+.++.....
T Consensus 263 -~~~~~~i~~~S~sK~~~~G~r~G~~~~~~---------------~l~~~~~~~~~~~~~~~~~~~~-~a~~~~l~~~~~ 325 (444)
T 3if2_A 263 -NWDNNTILCFSLSKIGLPGMRTGIIVADA---------------KVIEAVSAMNAVVNLAPTRFGA-AIATPLVANDRI 325 (444)
T ss_dssp -CCCTTEEEEEESTTTTCGGGCCEEEECCH---------------HHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHTSHH
T ss_pred -cCCCCEEEEechhhccCCCCceEEEEECH---------------HHHHHHHHHHHhccCCCChHHH-HHHHHHHHcCch
Confidence 112457999999998 5677889998876 4555444321111112222222 233333332110
Q ss_pred -HHHHH-HHHHHHHHHHHHHHHHHc----CCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC-
Q 012104 309 -PAFKA-YAKQVKANAVALGNYLTG----KGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS- 381 (471)
Q Consensus 309 -~~~~~-~~~~~~~na~~l~~~L~~----~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~- 381 (471)
....+ ..+.+.++.+.+.+.|.+ .++.+. .+..++++|+++...+++..++.+.|.++||.+.++..+....
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~ 404 (444)
T 3if2_A 326 KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIH-KPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVD 404 (444)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEE-CCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEe-cCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCC
Confidence 11122 344455666666666654 256664 3455677888886546788899888999999999886553211
Q ss_pred ----CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 382 ----ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 382 ----~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+...+++||+++. +++++++..+.|.++++.
T Consensus 405 ~~~~~~~~~~iRis~~~------~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 405 VSDYQHAHECIRMSIAA------DEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp CTTCSGGGSEEEEESSS------CHHHHHHHHHHHHHHHHH
T ss_pred CcccccCCCeEEEEEeC------CHHHHHHHHHHHHHHHHH
Confidence 1123689999853 478999999999887764
No 117
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.93 E-value=3e-24 Score=215.07 Aligned_cols=288 Identities=14% Similarity=0.101 Sum_probs=197.8
Q ss_pred HHHHHhc-CCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 84 SRALQTF-HLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 84 ~~~~~lf-g~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
+.+++++ +++.+ -.+.++||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.++++
T Consensus 70 ~~la~~~~~~~~~---~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~---------~~~~~g~--~~~~v~~~ 135 (375)
T 3op7_A 70 KSVSQLYTGVKPE---QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD---------IPKSLGA--EVDLWQIE 135 (375)
T ss_dssp HHHHTTSSSCCGG---GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH---------HHHHTTC--EEEEEEEE
T ss_pred HHHHHHhccCChh---hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH---------HHHHcCC--EEEEEecc
Confidence 5566776 34443 23456677899999999999999999999999876532 1223343 45555555
Q ss_pred C-CCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--C
Q 012104 163 S-STGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--Y 234 (471)
Q Consensus 163 ~-~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~ 234 (471)
+ +++.+|+++++++++ .++++|++. +||+|...| +++|+++|+++|++||+|++|. ++... ..++... .
T Consensus 136 ~~~~~~~d~~~l~~~l~-~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~-~~~~~-~~~~~~~~~~ 212 (375)
T 3op7_A 136 EENGWLPDLEKLRQLIR-PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYR-SFSEL-DVPSIIEVYD 212 (375)
T ss_dssp GGGTTEECHHHHHHHCC-TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSC-CCSSS-CCCCHHHHCT
T ss_pred ccCCCCCCHHHHHHhhc-cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccc-ccccc-CCCchhhhcC
Confidence 3 345689999999987 478888754 688999999 8899999999999999999997 44332 1111111 3
Q ss_pred ccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 235 CHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 235 aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
.+++++|+||++ +|.|+|++++++ ++.+.+.........+++.. ..++...+++.. ...++
T Consensus 213 ~~i~~~s~sK~~~~~G~r~G~v~~~~---------------~l~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~-~~~~~ 275 (375)
T 3op7_A 213 KGIAVNSLSKTYSLPGIRIGWVAANH---------------QVTDILRDYRDYTMICAGVF-DDLVAQLALAHY-QEILE 275 (375)
T ss_dssp TEEEEEESSSSSSCGGGCCEEEECCH---------------HHHHHHTTTGGGTTSCCCHH-HHHHHHHHHHTH-HHHHH
T ss_pred CEEEEeEChhhcCCcccceEEEEeCH---------------HHHHHHHHHHhhhccCCCcH-HHHHHHHHHhcc-HHHHH
Confidence 458899999996 577889999865 56666654332222223223 333333455542 23456
Q ss_pred HHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHH-HhhcCeEeccCCcCCCCCCCCCCeeEE
Q 012104 313 AYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKL-CDLCNITVNKNAVFGDSSALAPGGVRI 390 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~-L~~~gI~v~~~~~p~~~~~~~~~~iRi 390 (471)
+..++..++++.+.+.|++. ++.++. +...+.+|+.+.. +.+..++.+. ++++||.+.++..++. ++++||
T Consensus 276 ~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ll~~~gi~v~~g~~~~~-----~~~iRi 348 (375)
T 3op7_A 276 RNRHILEENLAILDQWIEEEPLVSYIR-PAVVSTSFVKIAV-DMPMEDFCLQLLQEHGVLLVPGNRFER-----DGYVRL 348 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEECC-CSSSSCEEEEECC-SSCHHHHHHHHHHHHCEECEEGGGGTC-----TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceEec-CCCeEEEeEEcCC-CCCHHHHHHHHHHhCCEEEeChhhhCC-----CCeEEE
Confidence 66777788899999999886 777643 3445566776643 4567776554 5899999988765542 579999
Q ss_pred ecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 391 GTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 391 g~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++.. .++++++..+.|.++++.
T Consensus 349 ~~~~------~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 349 GFAC------EQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp CCCS------CHHHHHHHHHHHHHHHGG
T ss_pred EecC------CHHHHHHHHHHHHHHHHH
Confidence 9732 247898888888887764
No 118
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.93 E-value=9.7e-26 Score=225.67 Aligned_cols=315 Identities=15% Similarity=0.091 Sum_probs=212.1
Q ss_pred CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-c
Q 012104 40 ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV-L 118 (471)
Q Consensus 40 ~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al-l 118 (471)
.+.+++++++++...+.+.+ |+ ......++| +.+++++|.+. .+.++|||.|+.+++.++ +
T Consensus 11 ~~~~~~~v~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~~~~~sGt~al~~al~~~~~ 72 (367)
T 3nyt_A 11 QARIKDKIDAGIQRVLRHGQ--------YI-LGPEVTELE----DRLADFVGAKY-----CISCANGTDALQIVQMALGV 72 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHHHhcCC--------cc-CChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHhCC
Confidence 33456788888887765432 11 123344444 67888999874 466889999999999999 9
Q ss_pred CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccH
Q 012104 119 EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDY 198 (471)
Q Consensus 119 ~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~ 198 (471)
+|||+|++++++|.++.. .+...| .+++.++++++++.+|++++++++. .++++|+ ..+++|...|+
T Consensus 73 ~~gd~Vi~~~~~~~~~~~---------~~~~~G--~~~~~~~~~~~~~~~d~~~l~~~i~-~~~~~v~-~~~~~G~~~~~ 139 (367)
T 3nyt_A 73 GPGDEVITPGFTYVATAE---------TVALLG--AKPVYVDIDPRTYNLDPQLLEAAIT-PRTKAII-PVSLYGQCADF 139 (367)
T ss_dssp CTTCEEEEESSSCTHHHH---------HHHHTT--CEEEEECBCTTTCSBCGGGTGGGCC-TTEEEEC-CBCGGGCCCCH
T ss_pred CCcCEEEECCCccHHHHH---------HHHHcC--CEEEEEecCCccCCcCHHHHHHhcC-cCCcEEE-eeCCccChhhH
Confidence 999999999998876532 122334 4667777787778999999999885 4788877 44688999999
Q ss_pred HHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCC--CCcCCC-CCeEEEEeeCCCCCCCCCCCCCcccch
Q 012104 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTT--HKSLRG-PRAGMIFYRKGPKPPKKGQPEGAVYDF 275 (471)
Q Consensus 199 ~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~--~K~l~G-prgG~i~~~~~~~~~~~~~~~i~~~~l 275 (471)
++|+++|+++|++||+|++|+.|....+.....+ .|++++|+ ||++.+ +.||+++++++ ++
T Consensus 140 ~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~Sf~~~K~l~~~g~gg~~~~~~~--------------~l 203 (367)
T 3nyt_A 140 DAINAIASKYGIPVIEDAAQSFGASYKGKRSCNL--STVACTSFFPSAPLGCYGDGGAIFTNDD--------------EL 203 (367)
T ss_dssp HHHHHHHHHTTCCBEEECTTTTTCEETTEETTSS--SSEEEEECCTTSSSCCSSCCEEEEESCH--------------HH
T ss_pred HHHHHHHHHcCCEEEEECccccCCeECCeeccCC--CCEEEEECCCCCcCCCcCceeEEEeCCH--------------HH
Confidence 9999999999999999999987766544322222 39999996 899876 46899988763 45
Q ss_pred HhhhhhcCCC-----------CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCC--
Q 012104 276 EDKINFAVFP-----------SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTE-- 342 (471)
Q Consensus 276 ~~~i~~~~~~-----------~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~-- 342 (471)
.+++...... +......... ++++ +..+ ..+++..++..++++++.+.|.+.|+.+...+..
T Consensus 204 ~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~-aa~~--~~~l--~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 278 (367)
T 3nyt_A 204 ATAIRQIARHGQDRRYHHIRVGVNSRLDTLQ-AAIL--LPKL--EIFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNI 278 (367)
T ss_dssp HHHHHHHTBTTEEETTEECSCCCBCCCCHHH-HHHH--HHHH--HTHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEE
T ss_pred HHHHHHHHhcCCCcCceeeccCcCCCccHHH-HHHH--HHHH--HHHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCc
Confidence 5544332211 1111122222 2222 2221 2356677788888999999999887665322211
Q ss_pred --CeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCc-CCCC-CCC-------------CCCeeEEecCCCCCcCCCHHHH
Q 012104 343 --NHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDS-SAL-------------APGGVRIGTPAMTSRGLLEKDF 405 (471)
Q Consensus 343 --~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-p~~~-~~~-------------~~~~iRig~~~~t~~g~~~~d~ 405 (471)
.+++.+.+. +.+++.+.|.++||.++.... |... +++ ....+|+++.. .++++|+
T Consensus 279 ~~~~~~~~~~~----~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~----~~t~~~i 350 (367)
T 3nyt_A 279 SVYAQYTVRMD----NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHP----YLDTASI 350 (367)
T ss_dssp CCCSSEEEECS----SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCT----TCCHHHH
T ss_pred eeeEEEEEEeC----CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCC----CCCHHHH
Confidence 123344432 578899999999999887642 2211 111 12468887643 4568999
Q ss_pred HHHHHHHHH
Q 012104 406 EQIGEFLHR 414 (471)
Q Consensus 406 ~~l~~~i~~ 414 (471)
+++++.|.+
T Consensus 351 ~~v~~~~~~ 359 (367)
T 3nyt_A 351 KIICAALTN 359 (367)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998854
No 119
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.93 E-value=4.6e-24 Score=216.68 Aligned_cols=341 Identities=13% Similarity=0.091 Sum_probs=215.2
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCC--CCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGN--RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~--r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
.+.|..+. ...++.|++++...+.+.|. ++.. ++..+. .+.++ ..++++++++|++.+. .+.++||+.+
T Consensus 29 ~~yld~~~~~~~~~~v~~a~~~~l~~~~~--~~~~~~~~~~~~--~~~~~-~l~~~la~~~g~~~~~---v~~~~g~t~a 100 (416)
T 1qz9_A 29 VIYLDGNSLGARPVAALARAQAVIAEEWG--NGLIRSWNSAGW--RDLSE-RLGNRLATLIGARDGE---VVVTDTTSIN 100 (416)
T ss_dssp CEECCTTTSCCCBTTHHHHHHHHHHTCCC--CCGGGHHHHTSG--GGHHH-HHHHHHHTTTTCCTTS---EEECSCHHHH
T ss_pred eEeecCCCcCCCcHHHHHHHHHHHHHHHh--ccCccccchhhH--HHHHH-HHHHHHHHHcCCCccc---EEEeCChhHH
Confidence 34444333 45678999999888765442 2211 111111 12223 2457889999987532 2445677788
Q ss_pred HHHHHHHhc------CCCCEEEEe-CCCCCCcccccccccCCccc-eeccceeEEEeeeecCCCCCCCHHHHHHHhhhCC
Q 012104 110 NFAAYTAVL------EPHDRIMGL-DLPSGGHLTHGYYTSGGKKI-SATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR 181 (471)
Q Consensus 110 ~~~~~~all------~pGD~Vl~~-~~~~~g~~s~~~~~~~g~~~-~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~ 181 (471)
+.+++.+++ +|||+|++. ++.|+++... . ..+ .....+.+++.+++ +++|++.+.+ +
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~-~-----~~~~~~~~~g~~~~~v~~--------~~~l~~~i~~-~ 165 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYI-A-----EGLADMLQQGYTLRLVDS--------PEELPQAIDQ-D 165 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHH-H-----HHHHHHHCSSCEEEEESS--------GGGHHHHCST-T
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHH-H-----HHHHHHhcCCceEEEeCc--------HHHHHHHhCC-C
Confidence 888888876 999975554 4455543210 0 000 01100234444432 6788888864 7
Q ss_pred CcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcC-CCCCe-EEEE
Q 012104 182 PKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSL-RGPRA-GMIF 255 (471)
Q Consensus 182 pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l-~Gprg-G~i~ 255 (471)
+++|++. +|++|...|+++|+++|+++|+++++|++|+.|. .+.++. ++|++++|+||++ .||++ |+++
T Consensus 166 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~-----~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~ 240 (416)
T 1qz9_A 166 TAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA-----VPVDLHQAGADYAIGCTYKYLNGGPGSQAFVW 240 (416)
T ss_dssp EEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTT-----SCCCHHHHTCSEEEECSSSTTCCCTTCCCEEE
T ss_pred ceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccC-----cCCChhhcCCCEEEecCcccCCCCCCCeEEEE
Confidence 8877754 6889999999999999999999999999997542 222232 5799999999996 57888 9999
Q ss_pred eeCCCCC-CCCCCCC---Cc-ccchHhhhh--hcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 012104 256 YRKGPKP-PKKGQPE---GA-VYDFEDKIN--FAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 256 ~~~~~~~-~~~~~~~---i~-~~~l~~~i~--~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~ 328 (471)
+++++.. ....-.+ .. .+++..... ........++++...++++..+++.....++++..+++.++++++.+.
T Consensus 241 ~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (416)
T 1qz9_A 241 VSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIEL 320 (416)
T ss_dssp ECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9876421 1110000 00 000000000 000001234567777777777887765446788889999999999999
Q ss_pred HHcC----CceEeeCCC---CCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCC-CCCcCC
Q 012104 329 LTGK----GYSLVTGGT---ENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPA-MTSRGL 400 (471)
Q Consensus 329 L~~~----g~~i~~~~~---~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~-~t~~g~ 400 (471)
|++. |++++.... ..+++++.+. +..++.+.|.++||.+... ..+.+||+++. . .
T Consensus 321 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~~~~~---------~~~~lRis~~~~~----~ 383 (416)
T 1qz9_A 321 VEQRCAAHELTLVTPREHAKRGSHVSFEHP----EGYAVIQALIDRGVIGDYR---------EPRIMRFGFTPLY----T 383 (416)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT----THHHHHHHHHTTTEECEEE---------TTTEEEEECCTTT----C
T ss_pred HHhhccCCCeEEeCCCCHHHcCCEEEEecC----CHHHHHHHHHhCCcEeccC---------CCCeEEEeCcccC----C
Confidence 9886 888754321 2456777764 3677888888899987431 24689999853 3 3
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~~ 418 (471)
+++|++++.+.|.++++.
T Consensus 384 t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 384 TFTEVWDAVQILGEILDR 401 (416)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 489999999999988764
No 120
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.93 E-value=2.6e-24 Score=219.70 Aligned_cols=296 Identities=13% Similarity=0.013 Sum_probs=193.0
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHH--HHHHHHhcC--C----------CCEEEEeCCCCCCcccccccccCCccce
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPAN--FAAYTAVLE--P----------HDRIMGLDLPSGGHLTHGYYTSGGKKIS 148 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~--~~~~~all~--p----------GD~Vl~~~~~~~g~~s~~~~~~~g~~~~ 148 (471)
++.++++++++.++ .+.++++++|+ .+++.++++ | ||+|++.+|.|.++.. .+.
T Consensus 84 r~~ia~~~~~~~~~---i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~---------~~~ 151 (427)
T 3ppl_A 84 RQIWADLLGVPVEQ---VLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFS---------ITE 151 (427)
T ss_dssp HHHHHHHHTSCGGG---EEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH---------HHH
T ss_pred HHHHHHHhCCCcce---EEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHH---------HHH
Confidence 35677788887642 23344455688 478888877 7 9999999999877642 122
Q ss_pred eccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc---CCCCCccccHH---HHHHHH-HHhCCEEEEeccccch
Q 012104 149 ATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG---GSAYPRDWDYA---RFRAVA-DKCGALLLCDMAHISG 221 (471)
Q Consensus 149 ~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~---~s~~g~~~d~~---~i~~ia-~~~g~~livD~a~~~g 221 (471)
..| .+++.++++++ + +|+++|++.++..++++|++. +||+|..++.+ +|.++| +++|++||+|++|. +
T Consensus 152 ~~g--~~~~~v~~~~~-g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~-~ 226 (427)
T 3ppl_A 152 RFG--FEMISVPMNED-G-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYA-V 226 (427)
T ss_dssp HTT--CEEEEEEEETT-E-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTT-T
T ss_pred HcC--CEEEEeCCCCC-C-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCc-c
Confidence 334 45666777743 3 999999999965678988865 68999999888 677778 89999999999997 5
Q ss_pred hhccccCCCCC-----------CCccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCC
Q 012104 222 LVAAQEAANPF-----------EYCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQG 289 (471)
Q Consensus 222 lv~~g~~~~p~-----------~~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g 289 (471)
+.+.+..+.++ ...+++++|+||+ ++|.|.|++++++ ++.+.+.........+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~---------------~l~~~~~~~~~~~~~~ 291 (427)
T 3ppl_A 227 HTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSA---------------ENRKWYTGHAGIRGIG 291 (427)
T ss_dssp CBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCH---------------HHHHHHHHHHHHHCSC
T ss_pred cccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCH---------------HHHHHHHHHhhcccCC
Confidence 44443221111 1345889999998 6788999999886 4555444322111122
Q ss_pred CCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHc----C-CceEeeCCCCCeeEEEEccCCCCCHHHHHH
Q 012104 290 GPHNHQIGALAVALKQ--ASTPAFKAYAKQVKANAVALGNYLTG----K-GYSLVTGGTENHLVLWDLRPLGLTGNKVEK 362 (471)
Q Consensus 290 ~p~~~~iaa~a~al~~--~~~~~~~~~~~~~~~na~~l~~~L~~----~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (471)
.+...+ .+.+.++.. .....+++..+.+.++.+.+.+.|.+ . ++.+. .+..++++|+++... +..++.+
T Consensus 292 ~~~~~q-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~ 367 (427)
T 3ppl_A 292 PNKVNQ-LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT-VPAGGYFISLDVVPG--TASRVAE 367 (427)
T ss_dssp CCHHHH-HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC-CCSBSSCEEEECSTT--CHHHHHH
T ss_pred CCHHHH-HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-CCCccEEEEEECCcc--hHHHHHH
Confidence 222222 333333332 11123344555555566666666644 3 46653 445677889988642 6788888
Q ss_pred HHhhcCeEecc-CCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 363 LCDLCNITVNK-NAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 363 ~L~~~gI~v~~-~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.|.++||.+.+ +..++.......+++||++... +++++++..+.|.++++..
T Consensus 368 ~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-----~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 368 LAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-----PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp HHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-----CHHHHHHHHHHHHHHHHHH
Confidence 99999999988 4333211112458999998432 4789999999988887653
No 121
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.93 E-value=4.3e-24 Score=217.68 Aligned_cols=359 Identities=13% Similarity=0.072 Sum_probs=223.6
Q ss_pred cccccChHHHHHHHHHHHhccCCeeEecCCCC-----CcHHHHHHHh--hhhhcc-CCCCCCCCCCCCcchhHHHHHHHH
Q 012104 11 SLETVDPEIHDLIEKEKRRQCRGIELIASENF-----TSFAVIEALG--SALTNK-YSEGMPGNRYYGGNEFIDEIENLC 82 (471)
Q Consensus 11 ~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~-----~s~~v~~a~~--~~l~~~-~~~g~~~~r~~~g~~~~~~lE~~~ 82 (471)
.+.++.+.++..+.+- ..+...|+|..+..- .++.+++++. ..+.+. ...+|| +.......+
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp-----~~~~g~~~l---- 75 (423)
T 3ez1_A 6 ASRPALDLARQAYEAF-KARGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYP-----GGVAGLPSA---- 75 (423)
T ss_dssp CCHHHHHHHHHHHHHH-HHHTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSC-----SCTTCCHHH----
T ss_pred HHHHHHHHHHHHHHHh-hcCCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCC-----CCCCChHHH----
Confidence 4555666776666543 444567888777644 3457777774 333211 112331 111222233
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHH--HHHHHhcC--C---------CCEEEEeCCCCCCcccccccccCCcccee
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANF--AAYTAVLE--P---------HDRIMGLDLPSGGHLTHGYYTSGGKKISA 149 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~--~~~~all~--p---------GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~ 149 (471)
++.++++++++.+. .+.++++++|+. +++.++++ | ||+|++.+|.|.++.. .+..
T Consensus 76 r~~ia~~~~~~~~~---i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~---------~~~~ 143 (423)
T 3ez1_A 76 RALFAGYLDVKAEN---VLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFL---------LLQT 143 (423)
T ss_dssp HHHHHHHTTSCGGG---EEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHH---------HHHH
T ss_pred HHHHHHHhCCChhh---EEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHH---------HHHH
Confidence 35677888987642 244555567887 88888888 8 5999999999876532 1223
Q ss_pred ccceeEEEeeeecCCCCCCCHHHHHHHhh-hCCCcEEEEc---CCCCCccccHH---HHHHHH-HHhCCEEEEeccccch
Q 012104 150 TSIYFESLPYKVNSSTGYIDYDKLEEKAL-DFRPKLIICG---GSAYPRDWDYA---RFRAVA-DKCGALLLCDMAHISG 221 (471)
Q Consensus 150 ~g~~~~~~~~~v~~~~~~iD~~~le~~~~-~~~pklIi~~---~s~~g~~~d~~---~i~~ia-~~~g~~livD~a~~~g 221 (471)
.| .+++.++++++ .+|+++|++.++ ..++++|++. +||+|..++.+ +|+++| +++|++||+|++|...
T Consensus 144 ~g--~~~~~v~~~~~--g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~ 219 (423)
T 3ez1_A 144 LG--FELLTVDMQSD--GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVH 219 (423)
T ss_dssp HT--CEEEEEEEETT--EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSC
T ss_pred cC--CEEEeccCCCC--CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchh
Confidence 34 45566666643 499999999996 3578888753 78999999887 667778 8999999999999732
Q ss_pred hhcc-cc-CC-CCC--------CCccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCC
Q 012104 222 LVAA-QE-AA-NPF--------EYCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQG 289 (471)
Q Consensus 222 lv~~-g~-~~-~p~--------~~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g 289 (471)
.... +. .+ +.+ ...++++.|+||+ ++|.|.|++++++ ++.+.+.........+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~~ 284 (423)
T 3ez1_A 220 HLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSE---------------DNIRWLSKYLGAQSIG 284 (423)
T ss_dssp BCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECH---------------HHHHHHHHHHHHSCSC
T ss_pred hcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCH---------------HHHHHHHHHHhhhccC
Confidence 2222 11 11 111 1345899999996 7889999999887 4555544322111122
Q ss_pred CCcHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHH----cCC--ceEeeCCCCCeeEEEEccCCCCCHHHH
Q 012104 290 GPHNHQIGALAVALKQAS---TPAFKAYAKQVKANAVALGNYLT----GKG--YSLVTGGTENHLVLWDLRPLGLTGNKV 360 (471)
Q Consensus 290 ~p~~~~iaa~a~al~~~~---~~~~~~~~~~~~~na~~l~~~L~----~~g--~~i~~~~~~~~~~~v~~~~~~~~~~~~ 360 (471)
. +.....+.+.++.... ...+++..+.+.++.+.+.+.|. +.| +.+. .+...+++|+++... +.+++
T Consensus 285 ~-~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~ 360 (423)
T 3ez1_A 285 P-NKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWT-LPKGGYFISLDTAEP--VADRV 360 (423)
T ss_dssp C-CHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEEC-CCSBSSCEEEEESSS--CHHHH
T ss_pred C-CHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEe-CCCccEEEEEECCCC--cHHHH
Confidence 2 3333333333444311 12334444444455555555544 455 5553 445567788888642 67888
Q ss_pred HHHHhhcCeEecc-CCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 361 EKLCDLCNITVNK-NAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 361 ~~~L~~~gI~v~~-~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+.|.++||.+.+ +..++...+...+++||+++.. +++++++..+.|.++++..
T Consensus 361 ~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-----~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 361 VKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-----PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp HHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-----CHHHHHHHHHHHHHHHHHH
Confidence 8999999999988 5444321122458999998433 4789999999998887654
No 122
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=216.42 Aligned_cols=338 Identities=11% Similarity=0.074 Sum_probs=224.9
Q ss_pred cCCCCCcHHHHHHHhhhhhccCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeee-cCChHHHHHHHHH
Q 012104 38 ASENFTSFAVIEALGSALTNKYSEGMPGN-RYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSGSPANFAAYT 115 (471)
Q Consensus 38 ~s~n~~s~~v~~a~~~~l~~~~~~g~~~~-r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~-~~sGt~A~~~~~~ 115 (471)
++...+|++|++++...+.+.++.|.... ...-+.++.+.+| .+++.+++++|++.++ -.++ +.|||.++.+++.
T Consensus 19 at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~-~ar~~la~ll~~~~~~--evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 19 YFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIIN-NTENLVRELLAVPDNY--KVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp ECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHH-HHHHHHHHHHTCCTTE--EEEEESSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCC--eEEEEcCchHHHHHHHHH
Confidence 45566799999999998877664332210 1223556666676 4789999999997421 2344 4578899999999
Q ss_pred HhcCC--CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCC
Q 012104 116 AVLEP--HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSA 191 (471)
Q Consensus 116 all~p--GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~ 191 (471)
+++.+ ||+|+..... |+++.+.. .+...| +.++.++++ .++.+++++++..+. .++++|.+. .+.
T Consensus 96 ~l~~~~~Gd~v~~~~~g---~~~~~~~~----~a~~~G--~~~~~~~~~-~~~~~~~~~~~~~i~-~~t~lV~~~h~et~ 164 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTG---AWSAKAAE----EAKKFG--TINIVHPKL-GSYTKIPDPSTWNLN-PDASYVYYCANETV 164 (377)
T ss_dssp HHGGGSTTCEEEECCCS---HHHHHHHH----HHTTTS--EEEECSCCC-SSSCSCCCGGGCCCC-TTCSCEEEESEETT
T ss_pred hccCCCCCCeEEEEECC---HHHHHHHH----HHHHhC--CceEEeccC-CCcCCCCChHHhccC-CCccEEEEeCccCc
Confidence 99865 9999887643 33332210 111223 344444554 345677777765554 467887755 445
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCCCCC-CCCCCCC
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKGPKP-PKKGQPE 269 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~-~~~~~~~ 269 (471)
+|...|+ ||+++|+++++|++|++|. .|..+...|++++|.||++ ||.| |+++.++++.. ..+.-+.
T Consensus 165 tG~~~pi-----i~~~~~~~~~vD~~q~~g~-----~~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~ 233 (377)
T 3e77_A 165 HGVEFDF-----IPDVKGAVLVCDMSSNFLS-----KPVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPS 233 (377)
T ss_dssp TTEECSS-----CCCCTTCCEEEECTTTTTS-----SCCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCG
T ss_pred hheEchh-----hhccCCCEEEEEcccccCC-----CCCchhhcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCc
Confidence 7999998 5788999999999998663 3444445568999999999 8988 88888876532 1111111
Q ss_pred CcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCC---Ce
Q 012104 270 GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTE---NH 344 (471)
Q Consensus 270 i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~---~~ 344 (471)
. .++...... ....++|+...+.++..|++.+.+. ++++..++..+++++|.+.|++. |+.+...... ..
T Consensus 234 ~--~~~~~~~~~---~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ 308 (377)
T 3e77_A 234 V--LEYKVQAGN---SSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKM 308 (377)
T ss_dssp G--GCHHHHHTT---TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSS
T ss_pred h--hhHHHHhhc---CCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCc
Confidence 1 122221111 2235789999999999999988776 78999999999999999999987 8875321111 12
Q ss_pred eEEEEccCCCCCH-----HHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 345 LVLWDLRPLGLTG-----NKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 345 ~~~v~~~~~~~~~-----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+.+.+. ++++ ..+...|.++||.+.++. . ..+++|+|+...+ +++|++++.++|+++++.
T Consensus 309 ivsf~~~--~~~~~~~~~~~~l~~l~~~Gi~~~~g~----~---~~g~iRiS~~~~~----t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 309 NIPFRIG--NAKGDDALEKRFLDKALELNMLSLKGH----R---SVGGIRASLYNAV----TIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp EEEEEES--STTCCHHHHHHHHHHHHHTTEESCBCC----T---TTCSEEEECCTTS----CHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcC--CCCCchhHHHHHHHHHHHCCcEEeCCC----C---cCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 3444443 3332 245566678999986642 1 1357999985544 489999999999987754
No 123
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.93 E-value=1.6e-24 Score=223.74 Aligned_cols=307 Identities=11% Similarity=0.054 Sum_probs=206.2
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCE---EEEeCCCCCCcccccccccCCccceeccceeE---
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDR---IMGLDLPSGGHLTHGYYTSGGKKISATSIYFE--- 155 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~---Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~--- 155 (471)
+++++++++|++.++ .+.+.|+++++.+++.++++|||. |++.++.|++... .+. ..+...|....
T Consensus 116 l~~~la~~~g~~~~~---v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~-~~~----~~~~~~G~~~~~~~ 187 (465)
T 3e9k_A 116 IVGLMKDIVGANEKE---IALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHY-AIE----SQLQLHGLNIEESM 187 (465)
T ss_dssp HHGGGHHHHTCCGGG---EEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHH-HHH----HHHHHTTCCHHHHE
T ss_pred HHHHHHHHcCCCcCC---EEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHH-HHH----HHHHHcCCcceeee
Confidence 357888999998642 344666778999999999887765 9999998865321 000 01112232211
Q ss_pred EEeeeecCCCCCCCHHHHHHHhhh--CCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCC
Q 012104 156 SLPYKVNSSTGYIDYDKLEEKALD--FRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANP 231 (471)
Q Consensus 156 ~~~~~v~~~~~~iD~~~le~~~~~--~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p 231 (471)
+...+.+ +++.+|++++++++.+ .++++|++. +|++|...|+++|.++|+++|+++++|++|+.|. .+..
T Consensus 188 v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~-----~~~~ 261 (465)
T 3e9k_A 188 RMIKPRE-GEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGN-----VELY 261 (465)
T ss_dssp EEECCCT-TCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTT-----SCCC
T ss_pred EEEecCC-CCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCC-----cCCc
Confidence 1112223 4578999999999974 357777644 7889999999999999999999999999998663 2333
Q ss_pred CC--CccEEEeCCCCcC-CCCCe-EEEEeeCCCCC-CCCCCCCCcccchHhhhh--h------cCCCCCCCCCcHHHHHH
Q 012104 232 FE--YCHIVTTTTHKSL-RGPRA-GMIFYRKGPKP-PKKGQPEGAVYDFEDKIN--F------AVFPSLQGGPHNHQIGA 298 (471)
Q Consensus 232 ~~--~aDiv~~s~~K~l-~Gprg-G~i~~~~~~~~-~~~~~~~i~~~~l~~~i~--~------~~~~~~~g~p~~~~iaa 298 (471)
+. ++|++++|+||++ .||.+ |++++++++.. ..+.-.++........+. . .......|+|+...+++
T Consensus 262 ~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 341 (465)
T 3e9k_A 262 LHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCS 341 (465)
T ss_dssp HHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHH
T ss_pred hhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHH
Confidence 33 6899999999998 48875 88888765321 111000000000001110 0 00001235788888888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc-----------CCceEeeCCC---CCeeEEEEccCCCCCHHHHHHHH
Q 012104 299 LAVALKQASTPAFKAYAKQVKANAVALGNYLTG-----------KGYSLVTGGT---ENHLVLWDLRPLGLTGNKVEKLC 364 (471)
Q Consensus 299 ~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~-----------~g~~i~~~~~---~~~~~~v~~~~~~~~~~~~~~~L 364 (471)
+.+++..+...++++..++..++++++.+.|++ .|++++.+.. ...++++.+. .+..++.+.|
T Consensus 342 ~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~---~~~~~l~~~L 418 (465)
T 3e9k_A 342 LHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS---VPNKDVFQEL 418 (465)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---CTTCCHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---CCHHHHHHHH
Confidence 888888765545788888999999999999987 6888865321 1345666664 2445688888
Q ss_pred hhcCeEeccCCcCCCCCCCCCCeeEEec-CCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 365 DLCNITVNKNAVFGDSSALAPGGVRIGT-PAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 365 ~~~gI~v~~~~~p~~~~~~~~~~iRig~-~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+.||.+... .++.+||++ +..++ ++|++++.+.|.++++.
T Consensus 419 ~~~Gi~v~~~---------~~~~iRis~~~~~~t----~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 419 EKRGVVCDKR---------NPNGIRVAPVPLYNS----FHDVYKFTNLLTSILDS 460 (465)
T ss_dssp HTTTEECEEE---------TTTEEEEBCCTTTCC----HHHHHHHHHHHHHHHTC
T ss_pred HHCCEEEecC---------CCCEEEEeCcccCCC----HHHHHHHHHHHHHHHHh
Confidence 8899998631 247999997 55544 89999999999998764
No 124
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.92 E-value=2.7e-23 Score=217.39 Aligned_cols=304 Identities=12% Similarity=0.021 Sum_probs=215.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC--CCCceeeecCChHHHHHHHHHHhcCCC--------CEEEEeCCCCCCccccccccc
Q 012104 73 EFIDEIENLCRSRALQTFHLDP--TQWGVNVQPYSGSPANFAAYTAVLEPH--------DRIMGLDLPSGGHLTHGYYTS 142 (471)
Q Consensus 73 ~~~~~lE~~~~~~~~~lfg~~~--~~~~~~v~~~sGt~A~~~~~~all~pG--------D~Vl~~~~~~~g~~s~~~~~~ 142 (471)
.....+|...++++++++|++. +.. ..+.++||++|+..++.++.++| |+|++..+.|.++..
T Consensus 135 p~~~~le~~l~~~la~~~g~~~~~~~v-~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~------ 207 (514)
T 3mad_A 135 PSTAKFEAEVVAMTAHMLGGDAAGGTV-CGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDK------ 207 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGGTSCC-EEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHH------
T ss_pred hHHHHHHHHHHHHHHHHcCCCCccCCc-ceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHH------
Confidence 3455777777789999999873 211 12567788999999999998877 999999998876431
Q ss_pred CCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccc
Q 012104 143 GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHIS 220 (471)
Q Consensus 143 ~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~ 220 (471)
.+...|. +++.+++++ ++.+|+++|++++.+ ++++|++. +|++|...|+++|+++|+++|++|++|++|+.
T Consensus 208 ---~~~~~G~--~v~~v~~~~-~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~ 280 (514)
T 3mad_A 208 ---AAQYFGI--KLVRTPLDA-DYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGG 280 (514)
T ss_dssp ---HHHHHTC--EEEEECBCT-TSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ---HHHHcCC--eeEEeeeCC-CCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEeccccc
Confidence 2233454 455566664 789999999999974 78877744 67899999999999999999999999999983
Q ss_pred hhh----ccccCCCCC----CCccEEEeCCCCcCCCC-CeEEEEeeCCCCCCCCCCCCCcccchHhhhh---------hc
Q 012104 221 GLV----AAQEAANPF----EYCHIVTTTTHKSLRGP-RAGMIFYRKGPKPPKKGQPEGAVYDFEDKIN---------FA 282 (471)
Q Consensus 221 glv----~~g~~~~p~----~~aDiv~~s~~K~l~Gp-rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~---------~~ 282 (471)
+.. ..|....++ .++|++++|+||++.|| +.|+++++++ .+..... ..
T Consensus 281 ~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 346 (514)
T 3mad_A 281 FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRP--------------DLLHYQYFIAADWPGGLY 346 (514)
T ss_dssp TTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSH--------------HHHTTTCEEESSCTTCSE
T ss_pred ccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCH--------------HHhccccccccccCCCcc
Confidence 322 112111122 26899999999995554 5688888773 1111100 01
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCHHHHH
Q 012104 283 VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVE 361 (471)
Q Consensus 283 ~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~ 361 (471)
..++..|++....+++..+++..+...++++..++..++++++.+.|++. |++++... ..++++.. .+.+..++.
T Consensus 347 ~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~--~~~~~~~l~ 422 (514)
T 3mad_A 347 FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVAS--DELNIYQVM 422 (514)
T ss_dssp EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEEC--SSSCHHHHH
T ss_pred cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeC--CCCCHHHHH
Confidence 11233556666666677777776656678889999999999999999987 88886433 33555544 456788898
Q ss_pred HHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 362 KLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 362 ~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+.|.++||.+.... .++.+|+++.... .++++++++.+.|.++++..
T Consensus 423 ~~L~~~Gi~v~g~~--------~~~~~Ri~~~~~~---~~~e~i~~~l~~L~~~l~~~ 469 (514)
T 3mad_A 423 EEMAGRGWRLNGLH--------RPPAFHVALTLRH---TEPGVVDRFLADLQDAVAQV 469 (514)
T ss_dssp HHHHTTTCBCEEET--------TTTEEEEECCGGG---GSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEeccCC--------CCCeEEEEEecCC---CCHHHHHHHHHHHHHHHHHH
Confidence 89988999883211 1367999875332 24689999999999888654
No 125
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.92 E-value=1.4e-23 Score=208.28 Aligned_cols=324 Identities=14% Similarity=0.118 Sum_probs=208.4
Q ss_pred CCeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHH
Q 012104 32 RGIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 32 ~~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~ 110 (471)
..|.|..+. ...+|.+++++...+.. |.. .|+..+.... .++++++++| .. + ..+.++||++|+
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~~-~~~------~~~~~~~~~~----l~~~la~~~g-~~--~-~v~~~~~gt~a~ 72 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSSG-QAG------PYGTDELTAQ----VKRKFCEIFE-RD--V-EVFLVPTGTAAN 72 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTSS-CCC------STTCSHHHHH----HHHHHHHHHT-SC--C-EEEEESCHHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhccC-ccc------ccccchHHHH----HHHHHHHHhC-CC--C-cEEEeCCccHHH
Confidence 345555443 23579999999876522 211 1222233333 3477888999 32 1 236678999999
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceec--cceeEEEeeeecCCCCCCCHHHHHH-HhhhC------C
Q 012104 111 FAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT--SIYFESLPYKVNSSTGYIDYDKLEE-KALDF------R 181 (471)
Q Consensus 111 ~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~--g~~~~~~~~~v~~~~~~iD~~~le~-~~~~~------~ 181 (471)
.+++.++++|||+|++.++.|+++...+ .+... |. +++.++.+ ++.+|+++|++ ++.+. +
T Consensus 73 ~~al~~~~~~gd~vi~~~~~~~~~~~~~-------~~~~~~~g~--~~~~v~~~--~~~~d~~~l~~~~i~~~~~~~~~~ 141 (356)
T 1v72_A 73 ALCLSAMTPPWGNIYCHPASHINNDECG-------APEFFSNGA--KLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQ 141 (356)
T ss_dssp HHHHHTSCCTTEEEEECTTSHHHHSSTT-------HHHHHTTSC--EEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCE
T ss_pred HHHHHHhcCCCCEEEEcCccchhhhhch-------HHHHHhCCc--EEEEecCC--CCeEcHHHHHHHhhhcchhhccCC
Confidence 9999999999999999988765543210 02222 43 44555544 47899999999 88642 5
Q ss_pred CcEEEEc-CCCCCcc---ccHHHHHHHHHHhCCEEEEeccccchh-hccccCCCCC---CCccEEEeCCCCcCCCCCe-E
Q 012104 182 PKLIICG-GSAYPRD---WDYARFRAVADKCGALLLCDMAHISGL-VAAQEAANPF---EYCHIVTTTTHKSLRGPRA-G 252 (471)
Q Consensus 182 pklIi~~-~s~~g~~---~d~~~i~~ia~~~g~~livD~a~~~gl-v~~g~~~~p~---~~aDiv~~s~~K~l~Gprg-G 252 (471)
+++|++. .+++|.. .++++|+++|+++|++|++|++|..+. ...+..+..+ .++|++++|+||+ .+|.| |
T Consensus 142 ~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g 220 (356)
T 1v72_A 142 PACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEA 220 (356)
T ss_dssp EEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEE
T ss_pred ceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccE
Confidence 7877754 4558884 456788899999999999999997432 2223333333 2678999999999 55666 6
Q ss_pred EEEeeCCCCCCCCCCCCCcccchHhhhhhcC-CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 253 ~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~-~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
++++++ ++.+++.... ..+....+. .. +...++..+....+.+..++..++++++.+.|++
T Consensus 221 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 282 (356)
T 1v72_A 221 IVLFNT---------------SLATEMSYRRKRAGHLSSKM--RF-LSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG 282 (356)
T ss_dssp EEESSG---------------GGHHHHHHHHHHTTCCCSST--HH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEECH---------------HHHhhHHHHhhccCchhhhH--HH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 887765 4444433211 111111111 11 2222333333334556777888899999999988
Q ss_pred C-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHH
Q 012104 332 K-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 332 ~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~ 410 (471)
. |+++.. +...+++|+++. .++.+.|.++||.+.++. ++ .+.+||+++.. .++++++++.+
T Consensus 283 ~~g~~~~~-~~~~~~~~~~~~------~~~~~~l~~~gi~v~~g~-~~------~~~iRi~~~~~----~~~~~i~~~~~ 344 (356)
T 1v72_A 283 LGGVEVLG-GTEANILFCRLD------SAMIDALLKAGFGFYHDR-WG------PNVVRFVTSFA----TTAEDVDHLLN 344 (356)
T ss_dssp CTTEEEES-CCCSSEEEEEEC------HHHHHHHHHTTCBCBCSS-SS------TTEEEEECCTT----CCHHHHHHHHH
T ss_pred CCCcEEcc-CCCccEEEEEcC------HHHHHHHHhcCeEEeccc-cC------CCeEEEEecCC----CCHHHHHHHHH
Confidence 5 888754 345667788763 367777888999998764 11 47899997543 34899999999
Q ss_pred HHHHHHHH
Q 012104 411 FLHRAVTL 418 (471)
Q Consensus 411 ~i~~~l~~ 418 (471)
.|.++++.
T Consensus 345 ~l~~~l~~ 352 (356)
T 1v72_A 345 QVRLAADR 352 (356)
T ss_dssp HHHHTC--
T ss_pred HHHHHHHh
Confidence 99887654
No 126
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.92 E-value=1.2e-23 Score=211.23 Aligned_cols=334 Identities=15% Similarity=0.080 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHhcc--CCeeEecC--CCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC
Q 012104 18 EIHDLIEKEKRRQC--RGIELIAS--ENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD 93 (471)
Q Consensus 18 ~~~~~~~~e~~~~~--~~i~li~s--~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~ 93 (471)
..+..+...++... ..+++... ...++++|++++. .|. +. ..+++...+..++++|++
T Consensus 13 ~~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~~----------~~---~~~~~~~~~~~a~~~g~~ 74 (374)
T 2aeu_A 13 KARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TYI----------GS---SYFAEKVNEYGLKHLGGD 74 (374)
T ss_dssp HHHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----STT----------HH---HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hhc----------Cc---hHHHHHHHHHHHHHhCCC
Confidence 45555665554433 35666544 3567899999985 121 11 233344456667889984
Q ss_pred CCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHH
Q 012104 94 PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKL 173 (471)
Q Consensus 94 ~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~l 173 (471)
..+ ..+.++||++|+.+++.++ |||+|++.+|.|++|++.. ..+...|. +++.+ .|++++
T Consensus 75 ~~~--~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~------~~~~~~g~--~~~~v--------~d~~~l 134 (374)
T 2aeu_A 75 END--KCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIE------RSCKIVNA--KYFES--------DKVGEI 134 (374)
T ss_dssp TTE--EEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHH------HHHHHTTC--EEEEE--------SCHHHH
T ss_pred Ccc--eEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHH------HHHHHcCc--EEEEe--------CCHHHH
Confidence 211 2466789999999999988 9999999999998875311 01122333 33333 388999
Q ss_pred HHHhhhCCCcE-EEEc--CCCCC-ccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCCCcCCC
Q 012104 174 EEKALDFRPKL-IICG--GSAYP-RDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRG 248 (471)
Q Consensus 174 e~~~~~~~pkl-Ii~~--~s~~g-~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~K~l~G 248 (471)
++. . .++++ |++. +||+| ...++++|.++|+++|++|++|++|..+.......++++. ++|++++|+||+|+|
T Consensus 135 ~~~-~-~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 135 LNK-I-DKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp HTT-C-CTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred Hhc-C-CCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 887 4 57898 7764 56788 7789999999999999999999999754310111112333 579999999999999
Q ss_pred CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHH------
Q 012104 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANA------ 322 (471)
Q Consensus 249 prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na------ 322 (471)
||+|++++++ ++.+++....... .++++....++...++.... . +..++..+++
T Consensus 213 ~~~G~~~~~~---------------~~~~~l~~~~~~~-~~~~~~~~~~a~~~al~~~~-~---~~~~~~~~~~~~~~~~ 272 (374)
T 2aeu_A 213 PRGGLLAGKK---------------ELVDKIYIEGTKF-GLEAQPPLLAGIYRALKNFN-L---ERIRKAFERAKNFDLS 272 (374)
T ss_dssp CSCEEEEEEH---------------HHHHHHHHHHHTT-TCBCCHHHHHHHHHHHHHCC-H---HHHHHHHHHHHHCCCH
T ss_pred cceEEEEECH---------------HHHHHHHHhhccc-cCCCCHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHH
Confidence 9999999887 5555554432211 12344445555555666542 1 1223334444
Q ss_pred --HHHHHHHHc----CCceEeeCCCCCeeEEEEccCCCCC---HHHH-HHHHhhcCeEeccCCcCCCCCCCCCCeeEEec
Q 012104 323 --VALGNYLTG----KGYSLVTGGTENHLVLWDLRPLGLT---GNKV-EKLCDLCNITVNKNAVFGDSSALAPGGVRIGT 392 (471)
Q Consensus 323 --~~l~~~L~~----~g~~i~~~~~~~~~~~v~~~~~~~~---~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 392 (471)
+.|.+.|.. .|+.+...+.+.++.|.++.. ..+ ..++ .++|+++||.+.++..+ +...+++||++
T Consensus 273 ~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~ll~~~gV~v~~g~~~----~~~~~~lRi~~ 347 (374)
T 2aeu_A 273 KIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDD-TINIKKLIEIGFNLLKNYGIITITVAGM----PGASKSLRIDL 347 (374)
T ss_dssp HHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSH-HHHHHHHHHHHHHHHHHHCEECSTTSSS----CSSCCSEEEET
T ss_pred HHHHHHHhhhhhhhccCcceeeCCceEEEEeecccc-cccccchHHHHHHHHHhCCEEEecCCCC----CCCCCeEEEEc
Confidence 444444444 255554344444444444321 001 1113 46778899999876432 11346899997
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 393 PAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 393 ~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.. ....+.+++++.+++.++++..
T Consensus 348 ~~---~~~~~~~l~~l~~~l~~~l~~~ 371 (374)
T 2aeu_A 348 TS---RDAERIDDNYIIKAIVESIKMA 371 (374)
T ss_dssp TS---GGGGGSCHHHHHHHHHHHHHHH
T ss_pred CC---chHHHHHHHHHHHHHHHHHHHH
Confidence 43 2223445899999988887653
No 127
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.92 E-value=6e-24 Score=215.90 Aligned_cols=332 Identities=10% Similarity=0.044 Sum_probs=204.2
Q ss_pred ccChHHHHHHHHH--HHhc---cCCeeEecCC------CC-CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHH
Q 012104 14 TVDPEIHDLIEKE--KRRQ---CRGIELIASE------NF-TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (471)
Q Consensus 14 ~~d~~~~~~~~~e--~~~~---~~~i~li~s~------n~-~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~ 81 (471)
..+..++.+...- ..++ ++.|+|..++ ++ +++.|.+++....... ..+|+.. .|. ..+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~Y~~~---~g~---~~lr~~ 87 (413)
T 3t18_A 15 NGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSH-IASYAPI---EGE---KDYRKI 87 (413)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHH-HHSCCCT---TCC---HHHHHH
T ss_pred CCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcCccc-ccCcCCC---CCC---HHHHHH
Confidence 3444566665432 2222 3678887664 22 5788888876533211 1123211 111 233322
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v 161 (471)
..+++....+.+... ..+.+.||++|+.+++.++++|||+|++.+|.|.++.. .+...|. +++.+++
T Consensus 88 la~~~~~~~~~~~~~--~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g~--~~~~~~~ 154 (413)
T 3t18_A 88 VIDTLFGPYKPEGYI--SAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRK---------ICEEFGR--NFKTFEF 154 (413)
T ss_dssp HHHHHHGGGCCSSEE--EEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHH---------HHHHHTC--EEEEECC
T ss_pred HHHHHhcccCccccC--cEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHH---------HHHHhCC--eEEEeec
Confidence 334454444433110 13445666789999999999999999999999877642 1223443 5556666
Q ss_pred cCCCCCCCHHHHHHHhhhC---CCc-EEEE-c--CCCCCccccHHHHHH---HHH------HhCCEEEEeccccchhhcc
Q 012104 162 NSSTGYIDYDKLEEKALDF---RPK-LIIC-G--GSAYPRDWDYARFRA---VAD------KCGALLLCDMAHISGLVAA 225 (471)
Q Consensus 162 ~~~~~~iD~~~le~~~~~~---~pk-lIi~-~--~s~~g~~~d~~~i~~---ia~------~~g~~livD~a~~~glv~~ 225 (471)
+.+++.+|+++|++.+.+. +++ +|++ + +||+|..++.+++.+ +|+ ++|++||+|++|. ++.+.
T Consensus 155 ~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~-~~~~~ 233 (413)
T 3t18_A 155 FTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYL-EFAGD 233 (413)
T ss_dssp BCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTG-GGSSS
T ss_pred cCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccc-cccCC
Confidence 4455789999999998752 566 5554 3 589999999877665 455 8999999999996 77665
Q ss_pred ccCCCCC-C---C--cc---EEEeCCCCcC--CCCCeEEEEe---eCCCCCCCCCCCCCcccchHhhhhhcCCC---CCC
Q 012104 226 QEAANPF-E---Y--CH---IVTTTTHKSL--RGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVFP---SLQ 288 (471)
Q Consensus 226 g~~~~p~-~---~--aD---iv~~s~~K~l--~GprgG~i~~---~~~~~~~~~~~~~i~~~~l~~~i~~~~~~---~~~ 288 (471)
+....++ . . .+ ++++|+||++ +|.|.|++++ ++ ++.+.+...... +..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 298 (413)
T 3t18_A 234 GDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSK---------------EIIEEFEASLAHSARCNW 298 (413)
T ss_dssp SSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCH---------------HHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCH---------------HHHHHHHHHHHHhhhccc
Confidence 5422221 1 1 12 7889999994 6788899988 44 455544332100 001
Q ss_pred CCCcHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHH
Q 012104 289 GGPHNHQIGALAVALKQA----STPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC 364 (471)
Q Consensus 289 g~p~~~~iaa~a~al~~~----~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L 364 (471)
++++...++++..++... .....++..+++.++.+.+.+.|++.|+++.. +..+.++|+++ .+..++.+.|
T Consensus 299 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~-~~~~~~~~~~~----~~~~~~~~~l 373 (413)
T 3t18_A 299 SNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENKLTMIP-YFGGFFTFIPT----DKAFDIVKDL 373 (413)
T ss_dssp SSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBC-CCSSSCEEEEC----SCHHHHHHHH
T ss_pred cCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC-CCceEEEEeCC----CCHHHHHHHH
Confidence 123333333333333221 01123455667788888899999988988753 45566778776 2677888889
Q ss_pred hhcCeEeccCCcCCCCCCCCCCeeEEecCCCC
Q 012104 365 DLCNITVNKNAVFGDSSALAPGGVRIGTPAMT 396 (471)
Q Consensus 365 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t 396 (471)
.++||.+.++ .+++||+++..+
T Consensus 374 ~~~gv~v~~g----------~~~iRis~~~~~ 395 (413)
T 3t18_A 374 EKENIFTIPS----------AKGIRVAICGVG 395 (413)
T ss_dssp HHTTEECEEC----------SSEEEECTTTSC
T ss_pred HhCCEEEecC----------CCceEEEEeeCC
Confidence 9999999764 368999986444
No 128
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.92 E-value=3.9e-24 Score=218.52 Aligned_cols=339 Identities=12% Similarity=0.060 Sum_probs=217.8
Q ss_pred ccCCeeEecCCC-CC--cHHH--HHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc-CCCCCCCceeeec
Q 012104 30 QCRGIELIASEN-FT--SFAV--IEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-HLDPTQWGVNVQP 103 (471)
Q Consensus 30 ~~~~i~li~s~n-~~--s~~v--~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf-g~~~~~~~~~v~~ 103 (471)
.++.|+|..+++ .. +|.+ ++++...+......+|+.. .....+++...+++.+.+ +++.+.+...+.+
T Consensus 46 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~------~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t 119 (430)
T 2x5f_A 46 KSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPP------QGIEELRDLWQQKMLRDNPELSIDNMSRPIVT 119 (430)
T ss_dssp TTCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCT------TCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEE
T ss_pred CCCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCC------CCCHHHHHHHHHHHhccCcccCCCccceEEEc
Confidence 346788877766 22 4555 6776555432111233321 112334432223333222 5554310003445
Q ss_pred CChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCcccee-ccceeEEEeeeecCCCCCCCHHHHHHHhhhC--
Q 012104 104 YSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISA-TSIYFESLPYKVNSSTGYIDYDKLEEKALDF-- 180 (471)
Q Consensus 104 ~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~-~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~-- 180 (471)
++|++|+.+++.++++|||+|++.+|.|.++.. .+.. .| .+++.++++++++.+|++++++.+.+.
T Consensus 120 ~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~---------~~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 188 (430)
T 2x5f_A 120 NALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL---------VFNTRNG--ANLQTYPIFDKDGHYTTDSLVEALQSYNK 188 (430)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH---------HHTTTTC--CEEEEECCBCTTSCBCSHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH---------HHHHhcC--CeEEEEeccCccCCcCHHHHHHHHHhcCC
Confidence 566789999999999999999999999987642 1222 33 355566666434689999999998753
Q ss_pred CCcEEEE-c-CCCCCcccc---HHHHHHHHHH-----hCCEEEEeccccchhhcccc-CCC---CC---CCc---cEEEe
Q 012104 181 RPKLIIC-G-GSAYPRDWD---YARFRAVADK-----CGALLLCDMAHISGLVAAQE-AAN---PF---EYC---HIVTT 240 (471)
Q Consensus 181 ~pklIi~-~-~s~~g~~~d---~~~i~~ia~~-----~g~~livD~a~~~glv~~g~-~~~---p~---~~a---Div~~ 240 (471)
++++|++ + +||+|..++ +++|.++|++ +|+++|+|++|. ++.+.+. .++ .+ ... +++++
T Consensus 189 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (430)
T 2x5f_A 189 DKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYY-GLFYEDVYTQSLFTALTNLHSNAILPIRLD 267 (430)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTT-TCBCSSSCCSCHHHHHHTTCCTTEEEEEEE
T ss_pred CCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcc-cccCCcccchHHHHHHhhccCCcceEEEEE
Confidence 5777664 3 788999998 7788899999 999999999997 5554443 122 11 123 68899
Q ss_pred CCCCcC--CCCCeEEEEe---eCCCCCCCCCCCCCcccchHhhhhhcCCC---CCCCCCcHHHHHHHHHHHH-Hh-ccHH
Q 012104 241 TTHKSL--RGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVFP---SLQGGPHNHQIGALAVALK-QA-STPA 310 (471)
Q Consensus 241 s~~K~l--~GprgG~i~~---~~~~~~~~~~~~~i~~~~l~~~i~~~~~~---~~~g~p~~~~iaa~a~al~-~~-~~~~ 310 (471)
|+||++ +|.|.|++++ ++ ++.+.+...... ....+++....++...+++ .. ....
T Consensus 268 s~sK~~~~~G~riG~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 332 (430)
T 2x5f_A 268 GATKEFFAWGFRVGFMTFGTSDQ---------------TTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKE 332 (430)
T ss_dssp EHHHHTTCGGGCCEEEEEBCCCH---------------HHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHH
T ss_pred ecccCCCCCCCCeEEEEEecCCH---------------HHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHH
Confidence 999996 6778899998 55 455544432211 0112344445555555665 32 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHH----cCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhh-cCeEeccCCcCCCCCCCCC
Q 012104 311 FKAYAKQVKANAVALGNYLT----GKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDL-CNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 311 ~~~~~~~~~~na~~l~~~L~----~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~ 385 (471)
.++..+++.++++.+.+.|+ +.|+++. .+..+.++|+++. +.+..++.+.|.+ +||.+.++ ..
T Consensus 333 ~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~-~~~~g~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g---------~~ 400 (430)
T 2x5f_A 333 IEQNIQTLKERYEVTKEVVYADQYHSHWQAY-DFNSGYFMAIKVH--DVDPEALRKHLIDKYSIGVIAL---------NA 400 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCGGGTTTEEEC-CCCBSSEEEEEES--SSCHHHHHHHHHHHHCEECEEC---------SS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCceee-CCCceEEEEeCCC--CCCHHHHHHHHHHhCCEEEecC---------CC
Confidence 33377778888899999998 5688775 3445567888886 5678888777766 99999764 24
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+++||+++. .++++++++.+.|.++++.
T Consensus 401 ~~iRis~~~-----~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 401 TDIRIAFSC-----VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp SEEEEEGGG-----SCGGGHHHHHHHHHHHHHH
T ss_pred CeEEEEEec-----CCHHHHHHHHHHHHHHHHh
Confidence 689999853 2367899988888887653
No 129
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.92 E-value=9.5e-24 Score=229.07 Aligned_cols=298 Identities=13% Similarity=0.038 Sum_probs=207.9
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChH-HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt-~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
+++.+++++|++. . +..++|+ .||.+++.++++|||+|++.++.|.++.. .+...|. +++.++
T Consensus 210 ~ee~la~l~G~d~----~-i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~---------~~~~~G~--~~v~v~ 273 (755)
T 2vyc_A 210 SEKYAARVFGADR----S-WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQ---------GLMLTGA--KPVYMV 273 (755)
T ss_dssp HHHHHHHHHTCSE----E-EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHHCC--EEEEEC
T ss_pred HHHHHHHHhCCCc----e-EEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHH---------HHHHcCC--EEEEEe
Confidence 4578899999875 2 4455665 79999999999999999999988765431 1233454 444443
Q ss_pred ecCCC----CCC-----CHHHHHHHhhhC-C--------CcEEE-EcCCCCCccccHHHHHHHHHHhCCEEEEeccccch
Q 012104 161 VNSST----GYI-----DYDKLEEKALDF-R--------PKLII-CGGSAYPRDWDYARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 161 v~~~~----~~i-----D~~~le~~~~~~-~--------pklIi-~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~g 221 (471)
.+.++ +.+ |+++|++++++. + |++++ ++.|++|.+.|+++|+++|+++|++|++|++|+.+
T Consensus 274 ~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 33221 235 999999998753 2 33555 56778899999999999999999999999999865
Q ss_pred hhccccC--CCCCCC--ccE------EEeCCCCcCCCCC-eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCC
Q 012104 222 LVAAQEA--ANPFEY--CHI------VTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGG 290 (471)
Q Consensus 222 lv~~g~~--~~p~~~--aDi------v~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~ 290 (471)
+.+.+.. .+++.+ +|+ +++|+||+|+||+ +|+++++++... + + ..+++........++
T Consensus 354 ~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~-------i---~-~~~~~~~~~~~~s~s 422 (755)
T 2vyc_A 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGA-------I---N-FSRFNQAYMMHATTS 422 (755)
T ss_dssp GGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTC-------C---C-HHHHHHHHHHTSCSS
T ss_pred cccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccc-------c---C-HHHHHHHHHHhCCCC
Confidence 5443321 233334 565 9999999999998 577877764100 0 1 122332221223468
Q ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-C---------ceEeeCC--------------------
Q 012104 291 PHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-G---------YSLVTGG-------------------- 340 (471)
Q Consensus 291 p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g---------~~i~~~~-------------------- 340 (471)
|+...++++.+|++.+...+.+++.++..++++.+++.|++. | ++++...
T Consensus 423 p~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (755)
T 2vyc_A 423 PLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKL 502 (755)
T ss_dssp CCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccccccccccchh
Confidence 899999999999988876556788899999999999999875 4 5543211
Q ss_pred -----------------------C-----CCeeEEEEccCC---------CCCHHHHHHHHhhcCeEeccCCcCCCCCCC
Q 012104 341 -----------------------T-----ENHLVLWDLRPL---------GLTGNKVEKLCDLCNITVNKNAVFGDSSAL 383 (471)
Q Consensus 341 -----------------------~-----~~~~~~v~~~~~---------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~ 383 (471)
. +...+.++++.. |+++.++.+.|+++||.+.+.
T Consensus 503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~--------- 573 (755)
T 2vyc_A 503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRT--------- 573 (755)
T ss_dssp HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEE---------
T ss_pred ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeec---------
Confidence 1 223455665432 456689999999999998653
Q ss_pred CCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 384 APGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 384 ~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
..+.+|+.++ .|.++++++++.++|.++.+..
T Consensus 574 ~~~~v~~~~~----~g~t~~~~~~l~~al~~~~~~~ 605 (755)
T 2vyc_A 574 TDFQIMFLFS----MGVTRGKWGTLVNTLCSFKRHY 605 (755)
T ss_dssp CSSEEEEECC----TTCCTTTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCHHHHHHHHHHHHHHHHhh
Confidence 2467998764 4556789999999998876543
No 130
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.92 E-value=6.8e-24 Score=216.37 Aligned_cols=361 Identities=14% Similarity=0.059 Sum_probs=216.4
Q ss_pred ccccccccccChHHHHHHHHHHHhccCCeeEecCCCC-----CcHHHHHHHhhhhh--c-cCCCCCCCCCCCCcchhHHH
Q 012104 6 EWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENF-----TSFAVIEALGSALT--N-KYSEGMPGNRYYGGNEFIDE 77 (471)
Q Consensus 6 ~~~~~~~~~~d~~~~~~~~~e~~~~~~~i~li~s~n~-----~s~~v~~a~~~~l~--~-~~~~g~~~~r~~~g~~~~~~ 77 (471)
....+.|......++....+ ++.+...|+|..+++. .++.+++++...+. . ....+|+.. .....
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~-l~~~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~------~G~~~ 80 (422)
T 3d6k_A 8 DYDAARLAQVREEVTAKYAE-LKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGL------LGIAD 80 (422)
T ss_dssp ----------CHHHHHHHHH-HHHTTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCS------SCCHH
T ss_pred CCCHHHHHhhHHHHHHHHHH-HhccCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCC------CCCHH
Confidence 33445566667777776553 3444557899888773 23466666543311 1 011233321 11223
Q ss_pred HHHHHHHHHHHhcCCCCCCCceeeecCCh-HHHH--HHHHHHhcCC------------CCEEEEeCCCCCCccccccccc
Q 012104 78 IENLCRSRALQTFHLDPTQWGVNVQPYSG-SPAN--FAAYTAVLEP------------HDRIMGLDLPSGGHLTHGYYTS 142 (471)
Q Consensus 78 lE~~~~~~~~~lfg~~~~~~~~~v~~~sG-t~A~--~~~~~all~p------------GD~Vl~~~~~~~g~~s~~~~~~ 142 (471)
+ ++.++++++++.+ +|..++| ++++ .+++.++.++ ||+|++.+|.|.++..
T Consensus 81 l----r~~ia~~~~~~~~----~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~------ 146 (422)
T 3d6k_A 81 I----RELWAEALGLPAD----LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFT------ 146 (422)
T ss_dssp H----HHHHHHHHTCCGG----GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHH------
T ss_pred H----HHHHHHHhCCChh----HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHH------
Confidence 3 3567777888764 3444455 5676 5666777666 4589999999876642
Q ss_pred CCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE-c--CCCCCccccHH---HHHHHHH-HhCCEEEEe
Q 012104 143 GGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC-G--GSAYPRDWDYA---RFRAVAD-KCGALLLCD 215 (471)
Q Consensus 143 ~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~-~--~s~~g~~~d~~---~i~~ia~-~~g~~livD 215 (471)
.+...| .+++.+++++ ++ +|++++++.+.+.++++|++ . +||+|..++.+ +|.++|+ ++|++||+|
T Consensus 147 ---~~~~~g--~~~~~v~~~~-~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D 219 (422)
T 3d6k_A 147 ---ITEHFG--FEMINVPMTD-EG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD 219 (422)
T ss_dssp ---HHHHHT--CEEEEEEEET-TE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE
T ss_pred ---HHHHcC--CEEEecCCCC-CC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 122334 3556666664 33 99999999987557898873 3 78999999887 5556676 899999999
Q ss_pred ccccc-hhhccccCCCCC-------C--CccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC
Q 012104 216 MAHIS-GLVAAQEAANPF-------E--YCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF 284 (471)
Q Consensus 216 ~a~~~-glv~~g~~~~p~-------~--~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~ 284 (471)
++|.. ++...+....++ + ..+++++|+||+ ++|.|.|++++++ ++.+.+.....
T Consensus 220 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~GlriG~~~~~~---------------~l~~~l~~~~~ 284 (422)
T 3d6k_A 220 NAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSK---------------ENIEWYASHAN 284 (422)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTSSCEEEECCH---------------HHHHHHHHHHH
T ss_pred CCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCcccceEEEEeCH---------------HHHHHHHHHHH
Confidence 99973 444333211122 1 345899999997 6788999999886 45555543221
Q ss_pred CCCCCCCcHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHc----CC-ceEeeCCCCCeeEEEEccCCCCCH
Q 012104 285 PSLQGGPHNHQIGALAVALKQA--STPAFKAYAKQVKANAVALGNYLTG----KG-YSLVTGGTENHLVLWDLRPLGLTG 357 (471)
Q Consensus 285 ~~~~g~p~~~~iaa~a~al~~~--~~~~~~~~~~~~~~na~~l~~~L~~----~g-~~i~~~~~~~~~~~v~~~~~~~~~ 357 (471)
+...+ ++....++.+.+++.. ....+++..+.+.++.+.+.+.|.+ .| +.+. .+..++++|+++... +.
T Consensus 285 ~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~ 360 (422)
T 3d6k_A 285 VRGIG-PNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT-SPTGGYFISVDVVPG--TA 360 (422)
T ss_dssp HHCSC-CCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEC-CCSBSSCEEEEESTT--CH
T ss_pred hhcCC-CCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEe-CCCcceEEEEECCCC--CH
Confidence 11122 2333333333444320 0123344455556667777776654 34 5553 345567889988642 56
Q ss_pred HHHHHHHhhcCeEeccC-CcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 358 NKVEKLCDLCNITVNKN-AVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 358 ~~~~~~L~~~gI~v~~~-~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+++.+.|.++||.+.++ ..+........+++||++.. + ++++++++.+.|.++++.
T Consensus 361 ~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~----~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 361 SRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-P----PVAELEVAMDGFATCVLM 417 (422)
T ss_dssp HHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-S----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-C----CHHHHHHHHHHHHHHHHH
Confidence 77888999999999883 32210010124789999854 2 478999999999887754
No 131
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.92 E-value=1.6e-23 Score=212.10 Aligned_cols=307 Identities=13% Similarity=0.083 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhc--cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCC
Q 012104 17 PEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTN--KYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDP 94 (471)
Q Consensus 17 ~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~--~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~ 94 (471)
.++++.+.++++++...++.+++.|. .+|++++...... .+. +..+..| +....+.+| +++++++|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~n~--~~vl~a~~~~~~~~~~~~-~~~~~~y--~~~~~~~Le----~~lA~l~g~e~ 76 (409)
T 3jzl_A 6 QAIRKKVETQIDDLQNKTDEIAEFNQ--AKVLDAFQENKVSDFHFH-PSTGYGY--DDEGRDTLE----RVYATVFKTEA 76 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGGC-CCCTTCT--TCHHHHHHH----HHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHhhhhhhccC-CCcCCCC--ChhHHHHHH----HHHHHHhCCCc
Confidence 36777778888888777888888874 6788888765321 221 1111111 223345555 57889999986
Q ss_pred CCCceeee--cCChHHHHHHHHHHhcCCCCEEEEeC-CCCCCcccccccccCC---ccceeccceeEEEeeeecCCCCCC
Q 012104 95 TQWGVNVQ--PYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLTHGYYTSGG---KKISATSIYFESLPYKVNSSTGYI 168 (471)
Q Consensus 95 ~~~~~~v~--~~sGt~A~~~~~~all~pGD~Vl~~~-~~~~g~~s~~~~~~~g---~~~~~~g~~~~~~~~~v~~~~~~i 168 (471)
+.++ ++||++|+.+++.++++|||+|++.+ +.|++..... ...| ..+...| .+++.++++ +++.+
T Consensus 77 ----alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~--~~~g~~~~~l~~~G--~~~~~v~~~-~~g~~ 147 (409)
T 3jzl_A 77 ----ALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIV--GIRKQGQGSLKDFH--IGYSSVPLL-ENGDV 147 (409)
T ss_dssp ----EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHH--TSSSSSSSCTGGGT--CEEEECCCC-TTSCC
T ss_pred ----EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHH--hcccchhhHHHHcC--CEEEEeCCC-CCCCc
Confidence 4554 78999999999999999999999998 8887653100 0000 0111233 455556655 45889
Q ss_pred CHHHHHHHhhhCCCcEEEEcC------CCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCCC-CccEEE
Q 012104 169 DYDKLEEKALDFRPKLIICGG------SAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YCHIVT 239 (471)
Q Consensus 169 D~~~le~~~~~~~pklIi~~~------s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~ 239 (471)
|++++++++++ ++|+|++.. |++|...|+++|+++|++ +|+++++|++|+.+.. ...|.. ++|+++
T Consensus 148 d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~----~~~p~~~g~Div~ 222 (409)
T 3jzl_A 148 DFPRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVE----YQEPPEVGADIIA 222 (409)
T ss_dssp CHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTS----SCCSGGGTCSEEE
T ss_pred CHHHHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccc----cCCccccCCeEEE
Confidence 99999999864 789888654 788999999999999999 9999999999974431 123444 689999
Q ss_pred eCCCCcCCC---CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-CCCCC--CCCCcHHHHHHHHHHHHHhccHHHHH
Q 012104 240 TTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-VFPSL--QGGPHNHQIGALAVALKQASTPAFKA 313 (471)
Q Consensus 240 ~s~~K~l~G---prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-~~~~~--~g~p~~~~iaa~a~al~~~~~~~~~~ 313 (471)
+|+||++.| +.||++++++ ++.+++... ..++. ..++......++...++ ....
T Consensus 223 ~S~sK~lgg~~~~~GG~v~~~~---------------~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~-----~~~~ 282 (409)
T 3jzl_A 223 GSLIKNPGGGLAKTGGYIAGKE---------------ALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFF-----LAPH 282 (409)
T ss_dssp EETTSGGGTTTCSSCEEEEECH---------------HHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHH-----HHHH
T ss_pred ECccccCCccCCceEEEEEeCH---------------HHHHHHHHHhccccccccccccHHHHHHHHHHHh-----hHHH
Confidence 999999876 5689999986 566655442 22332 12333321122222222 2356
Q ss_pred HHHHHHHHHHHHHHHHHcCCceEeeCCCCCe-----eEEEEccCCCCCHHHHHHHHhhcCe
Q 012104 314 YAKQVKANAVALGNYLTGKGYSLVTGGTENH-----LVLWDLRPLGLTGNKVEKLCDLCNI 369 (471)
Q Consensus 314 ~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~gI 369 (471)
+.++..+|++++++.|+++|+++..+ .+| ++.+.+.. ......+.+.|+....
T Consensus 283 r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~-~~~~~~~~~~L~~~~~ 340 (409)
T 3jzl_A 283 VTAQAIKGARFTAAMLAEFGVEADPV--WDAPRTDLIQSVSFHN-KEKMVAFAQAIQAASP 340 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCCEEECSC-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcCc
Confidence 77888999999999999999988433 333 55566542 1122345566666543
No 132
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.92 E-value=2.2e-23 Score=213.09 Aligned_cols=340 Identities=13% Similarity=0.109 Sum_probs=205.5
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH-H
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS-P 108 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt-~ 108 (471)
+.|+|..++.. .+|.|++++...+.... .+....+ |+.......+++...+++.+.++++.+ .|..++|+ +
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~-y~~~~g~~~l~~~ia~~~~~~~~~~~~----~i~~t~G~~~ 130 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHELS-TIEGYSG-YGAEQGAKPLRAAIAKTFYGGLGIGDD----DVFVSDGAKC 130 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHTT-STTTCCC-CCCTTCCHHHHHHHHHHHHTTTTCCGG----GEEEESCHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhccc-ccCCccC-CCCCCCCHHHHHHHHHHHHccCCCCcc----eEEECCChHH
Confidence 56888776643 57899999987765321 1111111 222222345554333444433466543 34445555 5
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccc----------eeEEEeeeecCC-CCCCCHHHHHHHh
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI----------YFESLPYKVNSS-TGYIDYDKLEEKA 177 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~----------~~~~~~~~v~~~-~~~iD~~~le~~~ 177 (471)
++.+ +.++++|||+|++.+|.|.++... +...|. ..+++.++++.+ +...|+++
T Consensus 131 al~~-l~~l~~~gd~Vl~~~p~y~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 195 (432)
T 3ei9_A 131 DISR-LQVMFGSNVTIAVQDPSYPAYVDS---------SVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST----- 195 (432)
T ss_dssp HHHH-HHHHHCTTCCEEEEESCCTHHHHH---------HHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----
T ss_pred HHHH-HHHHcCCCCEEEEeCCCCHHHHHH---------HHHcCCcccccccccccCceEEeccCcccCCcCChhh-----
Confidence 6654 688899999999999999876421 111221 023444555432 23445332
Q ss_pred hhCCCcEEE-Ec-CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhhccccCCCCC--C---CccEEEeCCCCcC-
Q 012104 178 LDFRPKLII-CG-GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLVAAQEAANPF--E---YCHIVTTTTHKSL- 246 (471)
Q Consensus 178 ~~~~pklIi-~~-~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~--~---~aDiv~~s~~K~l- 246 (471)
..++++|+ ++ +||+|.+++.+ +|+++|+++|++||+|++|. +++..+...+.. . ..+++++|+||++
T Consensus 196 -~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g 273 (432)
T 3ei9_A 196 -VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYA-MYMSDDNPRSIFEIPGAEEVAMETASFSNYAG 273 (432)
T ss_dssp -CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGCCSSCCSSGGGSTTGGGTEEEEEESHHHHC
T ss_pred -CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchH-hhccCCCCCChhhcCCCCCeEEEEecchhccC
Confidence 24678776 44 78899988754 55667999999999999998 554443222211 1 2358999999995
Q ss_pred -CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 012104 247 -RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 247 -~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l 325 (471)
+|.|.|++++++++... . . ..+.+.+....... .++++...+++...++......++++..+++.++++++
T Consensus 274 ~~G~r~G~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l 345 (432)
T 3ei9_A 274 FTGVRLGWTVIPKKLLYS--D---G--FPVAKDFNRIICTC-FNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNII 345 (432)
T ss_dssp TTTTCCEEEECCTTCBCT--T---S--CBHHHHHHHHHHHS-CCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEEEEChHHhhc--c---h--HHHHHHHHHHhccc-cCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 78899999998752000 0 0 01233333221111 12334444443333443211234677888889999999
Q ss_pred HHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHH-HHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHH
Q 012104 326 GNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKV-EKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKD 404 (471)
Q Consensus 326 ~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d 404 (471)
.+.|++.|+++.. +..++++|+++. +.+..++ ..+++++||.+.++..|+. ...+++||++ .+ ++++
T Consensus 346 ~~~L~~~g~~~~~-~~~~~~~~~~~~--~~~~~~~~~~ll~~~gv~v~~g~~f~~---~~~~~iRis~--~~----~~e~ 413 (432)
T 3ei9_A 346 IDTFTSLGYDVYG-GKNAPYVWVHFP--NQSSWDVFAEILEKTHVVTTPGSGFGP---GGEGFVRVSA--FG----HREN 413 (432)
T ss_dssp HHHHHHTTCCEEE-CSSSSEEEEECT--TSCHHHHHHHHHHHHCEECEEGGGGCG---GGTTEEEEEC--CS----CHHH
T ss_pred HHHHHHCCceecC-CCcceEEEEECC--CCCHHHHHHHHHHHCCEEEeCchHhCC---CCCCEEEEEe--cC----CHHH
Confidence 9999988998864 345667899986 4566665 5556778999998876652 2357999996 22 3678
Q ss_pred HHHHHHHHHH
Q 012104 405 FEQIGEFLHR 414 (471)
Q Consensus 405 ~~~l~~~i~~ 414 (471)
+++..+.|.+
T Consensus 414 l~~~l~rl~~ 423 (432)
T 3ei9_A 414 ILEACRRFKQ 423 (432)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 133
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.92 E-value=1.2e-22 Score=202.09 Aligned_cols=318 Identities=14% Similarity=0.068 Sum_probs=217.4
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
++.|+|..++|. ++|.|++++...+.+. .+||.. ...++ +++++++++++.+ ..+.++||++
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l----~~~la~~~~~~~~---~i~~~~g~t~ 89 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKNL--GVYPDV-------NYRRL----NKSIENYLKLKDI---GIVLGNGASE 89 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHGG--GSCCCT-------TCHHH----HHHHHHHHTCCSC---EEEEESSHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHHh--cCCCCc-------cHHHH----HHHHHHHhCCCcc---eEEEcCCHHH
Confidence 467888888765 4789999988776542 234332 11233 4677888898764 2345667788
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE-
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC- 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~- 187 (471)
|+.+++.++ |+|++.+|.|.++.. .+...| .+++.+++++ ++.+|++++++.+.+ +++|++
T Consensus 90 al~~~~~~~----d~vi~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~-~~~~~~~~l~~~l~~--~~~v~i~ 151 (361)
T 3ftb_A 90 IIELSISLF----EKILIIVPSYAEYEI---------NAKKHG--VSVVFSYLDE-NMCIDYEDIISKIDD--VDSVIIG 151 (361)
T ss_dssp HHHHHHTTC----SEEEEEESCCTHHHH---------HHHHTT--CEEEEEECCT-TSCCCHHHHHHHTTT--CSEEEEE
T ss_pred HHHHHHHHc----CcEEEecCChHHHHH---------HHHHcC--CeEEEeecCc-ccCCCHHHHHHhccC--CCEEEEe
Confidence 999999888 999999998876532 122334 3555666663 457899999999875 887774
Q ss_pred c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-----CccEEEeCCCCcC--CCCCeEEEEe
Q 012104 188 G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-----YCHIVTTTTHKSL--RGPRAGMIFY 256 (471)
Q Consensus 188 ~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-----~aDiv~~s~~K~l--~GprgG~i~~ 256 (471)
+ +||+|..++. ++|+++|+++|+++++|++|. ++... ...+++. ...++++|+||++ +|.|.|++++
T Consensus 152 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~ 229 (361)
T 3ftb_A 152 NPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFI-EFTGD-PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGIT 229 (361)
T ss_dssp TTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSG-GGTCC-TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEE
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcch-hhcCC-cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEe
Confidence 4 6789998865 556677889999999999997 54442 1122221 2338899999995 5778899884
Q ss_pred eCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-Cce
Q 012104 257 RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYS 335 (471)
Q Consensus 257 ~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~ 335 (471)
.++ ++.+.+.....+ .+++...+++...+++. ..++++..++..++++.+.+.|++. |+.
T Consensus 230 ~~~--------------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 290 (361)
T 3ftb_A 230 NNK--------------EIAAKIKAKQNP---WNINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIK 290 (361)
T ss_dssp SCH--------------HHHHHHHTTSCT---TCSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEE
T ss_pred CCH--------------HHHHHHHhhCCC---CCCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 332 566666554332 24445555555555542 2356778888889999999999987 777
Q ss_pred -EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 336 -LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 336 -i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
+. .+. ..++++++.. .+..++.+.|.++||.+.++..++. ...+.+||++. ++++++++.+.|.+
T Consensus 291 ~~~-~~~-~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~~---~~~~~iRis~~-------~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 291 RVF-SPH-ANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFIG---LDDSFVRFAIK-------DEKKNTKFLRALKG 356 (361)
T ss_dssp EEE-CCS-SSEEEEEESS--SCHHHHHHHHHTTTEECEECTTSTT---CCTTEEEEECC-------CHHHHHHHHHHHHH
T ss_pred eec-CCC-CeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCCC---CCCCEEEEEcC-------CHHHHHHHHHHHHH
Confidence 54 333 3456777754 5788888888888999988765432 23579999973 36889999999887
Q ss_pred HHH
Q 012104 415 AVT 417 (471)
Q Consensus 415 ~l~ 417 (471)
+.+
T Consensus 357 ~~~ 359 (361)
T 3ftb_A 357 VEN 359 (361)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 134
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.92 E-value=3e-23 Score=206.74 Aligned_cols=277 Identities=16% Similarity=0.090 Sum_probs=189.0
Q ss_pred HHHHHHhcCCCCCCCceeeecCC-hHHHHHHHHHHhcCCC-CEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYS-GSPANFAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~s-Gt~A~~~~~~all~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
++.+++++|++.+ +|..++ +++|+.+++.++++|| |+|++.+|.|.++.. .+...| .+++.++
T Consensus 64 r~~la~~~~~~~~----~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~---------~~~~~g--~~~~~v~ 128 (356)
T 1fg7_A 64 IENYAQYAGVKPE----QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSV---------SAETIG--VECRTVP 128 (356)
T ss_dssp HHHHHHHHTSCGG----GEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHH---------HHHHHT--CEEEECC
T ss_pred HHHHHHHhCCChH----HEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHH---------HHHHcC--CEEEEee
Confidence 4667788898753 344444 4679999999999999 999999999877542 122334 3455565
Q ss_pred ecCCCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCCC--C
Q 012104 161 VNSSTGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE--Y 234 (471)
Q Consensus 161 v~~~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~~--~ 234 (471)
.+ +++.+|++++++.+. ++++|++ + +||+|..+|.+++.++++. +|+++++|++|. ++.........++ .
T Consensus 129 ~~-~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~ 204 (356)
T 1fg7_A 129 TL-DNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYI-EFCPQASLAGWLAEYP 204 (356)
T ss_dssp CC-TTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTG-GGSGGGCSGGGTTTCT
T ss_pred CC-CCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCCEEEEEccch-hhcCCCcHHHHHhhCC
Confidence 55 456899999998875 7887774 4 6789999987777655544 899999999997 3331111111112 3
Q ss_pred ccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 235 CHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 235 aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
.++++.|+||++ +|+|.|++++++ ++.+.+.....+. +++....++...+++.....+++
T Consensus 205 ~~i~~~s~sK~~g~~G~r~G~~~~~~---------------~~~~~l~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~ 266 (356)
T 1fg7_A 205 HLAILRTLSKAFALAGLRCGFTLANE---------------EVINLLMKVIAPY---PLSTPVADIAAQALSPQGIVAMR 266 (356)
T ss_dssp TEEEEEESSSTTCCGGGCCEEEEECH---------------HHHHHHHHHSCSS---CSCHHHHHHHHHHTSHHHHHHHH
T ss_pred CEEEEecchHhhcCchhhhEEEEeCH---------------HHHHHHHHhcCCC---CCCHHHHHHHHHHhcCccHHHHH
Confidence 468999999995 688889999976 5666665543332 23333333333344321101256
Q ss_pred HHHHHHHHHHHHHHHHHHcCC--ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEecc-CCcCCCCCCCCCCeeE
Q 012104 313 AYAKQVKANAVALGNYLTGKG--YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNK-NAVFGDSSALAPGGVR 389 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~~g--~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~iR 389 (471)
+..+++.+++++|.+.|++.| +.+ .+ ...+++|+++. +..++.+.|.++||.+.+ +..++. .+++|
T Consensus 267 ~~~~~~~~~~~~l~~~L~~~~~~~~~-~~-~~~~~~~~~~~----~~~~l~~~L~~~gI~v~~~g~~~~~-----~~~iR 335 (356)
T 1fg7_A 267 ERVAQIIAEREYLIAALKEIPCVEQV-FD-SETNYILARFK----ASSAVFKSLWDQGIILRDQNKQPSL-----SGCLR 335 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTEEEE-CC-CSSSEEEEEET----THHHHHHHHHHTTEECEECTTSTTC-----TTEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEE-CC-CCCeEEEEECC----CHHHHHHHHHHCCEEEEECCCCCCC-----CCeEE
Confidence 777888889999999999876 333 23 34556788874 567888888999999988 654431 36899
Q ss_pred EecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 390 IGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 390 ig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
|++. +++|++++.+.|.+
T Consensus 336 is~~-------~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 336 ITVG-------TREESQRVIDALRA 353 (356)
T ss_dssp EECC-------CHHHHHHHHHHHHT
T ss_pred EEeC-------CHHHHHHHHHHHHh
Confidence 9973 26899999888765
No 135
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.4e-23 Score=215.96 Aligned_cols=323 Identities=11% Similarity=0.008 Sum_probs=207.2
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCC-------ceeeecCChHHHHHHHHHHhcC-------------------CCCEEE
Q 012104 72 NEFIDEIENLCRSRALQTFHLDPTQW-------GVNVQPYSGSPANFAAYTAVLE-------------------PHDRIM 125 (471)
Q Consensus 72 ~~~~~~lE~~~~~~~~~lfg~~~~~~-------~~~v~~~sGt~A~~~~~~all~-------------------pGD~Vl 125 (471)
.....++|+.+.+++++++|.+...+ +..+.++|||+||+.++.+... |+++|+
T Consensus 113 ~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (481)
T 4e1o_A 113 SPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAY 192 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEE
T ss_pred CcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEE
Confidence 45667899999999999999875321 1236678899999988876532 678999
Q ss_pred EeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCC-----CcEEEEc--CCCCCccccH
Q 012104 126 GLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICG--GSAYPRDWDY 198 (471)
Q Consensus 126 ~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~-----pklIi~~--~s~~g~~~d~ 198 (471)
+.+..|.+.. +.+...|. +++.++++ +++.+|+++|++++.+.+ |.+|++. .+++|...|+
T Consensus 193 ~s~~~H~s~~---------~~~~~~g~--~~~~v~~~-~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l 260 (481)
T 4e1o_A 193 ASDQAHSSVE---------KAGLISLV--KMKFLPVD-DNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCL 260 (481)
T ss_dssp EETTSCHHHH---------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred EcCcchHHHH---------HHHHhCCC--ceEEEEcC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCH
Confidence 9987765432 12223443 55556666 578999999999997532 6666543 6788999999
Q ss_pred HHHHHHHHHhCCEEEEeccccchhhccccCCC---CCCCccEEEeCCCCcCCCCCe-EEEEeeCCC--CCCCCCCCC-Cc
Q 012104 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAAN---PFEYCHIVTTTTHKSLRGPRA-GMIFYRKGP--KPPKKGQPE-GA 271 (471)
Q Consensus 199 ~~i~~ia~~~g~~livD~a~~~glv~~g~~~~---p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~--~~~~~~~~~-i~ 271 (471)
++|+++|+++|+++++|+||+.+......... .+..+|++++++||++.+|.+ |++++++.. ......... +.
T Consensus 261 ~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~ 340 (481)
T 4e1o_A 261 SELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLR 340 (481)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGC
T ss_pred HHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhcc
Confidence 99999999999999999999866443322211 223579999999999988876 777776531 000000000 00
Q ss_pred ccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEc
Q 012104 272 VYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDL 350 (471)
Q Consensus 272 ~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~ 350 (471)
........+.. ....+++.. ....++..+++.+...++++..++..++++++++.|++. |++++.. ...+++++++
T Consensus 341 ~~~~~~~~~~~-~~~~~~~r~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~-~~~~~v~f~~ 417 (481)
T 4e1o_A 341 HANSGVATDFM-HWQIPLSRR-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK-RHLGLVVFRL 417 (481)
T ss_dssp CTTTTTSCCGG-GGSSSSCCC-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC-CCSSEEEEEE
T ss_pred CcccCCCCCcc-cccccCCCC-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceeEEEEEe
Confidence 00000000000 001112211 123344455555555678899999999999999999987 8998643 3456777776
Q ss_pred cCCCCCHHHHHHHHhhcCeE-eccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 351 RPLGLTGNKVEKLCDLCNIT-VNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 351 ~~~~~~~~~~~~~L~~~gI~-v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
...+....++.+.|.+.|+. +.+... .....+|+++... ..+++|++++.+.|.++.+.
T Consensus 418 ~~~~~~~~~l~~~L~~~g~~~~~~~~~------~g~~~lR~~~~~~---~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 418 KGPNSLTENVLKEIAKAGRLFLIPATI------QDKLIIRFTVTSQ---FTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp SSCHHHHHHHHHHHHHHCSSBCEEEEE------TTEEEEEEECCCT---TCCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCeEEEEeeEE------CCEEEEEEEeCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 54222245676777777744 333211 1235799996432 23589999999999887654
No 136
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.92 E-value=3.1e-24 Score=213.65 Aligned_cols=333 Identities=11% Similarity=0.036 Sum_probs=209.0
Q ss_pred HhccCCeeEecCCCCC--cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCC
Q 012104 28 RRQCRGIELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYS 105 (471)
Q Consensus 28 ~~~~~~i~li~s~n~~--s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~s 105 (471)
.++...+.+.+++|.. +|.|++++...+... .|+.......++ +++++++|.+. .+.++|
T Consensus 10 ~~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~~~---------~~~~~~~~~~l~----~~la~~~~~~~-----~i~~~~ 71 (359)
T 3pj0_A 10 YQKTPYKLGGNGPRNVGVLTEALQNIDDNLESD---------IYGNGAVIEDFE----TKIAKILGKQS-----AVFFPS 71 (359)
T ss_dssp HHTCSEESSSSSCCBHHHHHHHTTTSCTTCBCC---------BTTBSHHHHHHH----HHHHHHHTCSE-----EEEESC
T ss_pred HHhcchhhcCCCccccCCCHHHHHHHHhhcccC---------cccCCHHHHHHH----HHHHHHhCCCc-----EEEeCC
Confidence 3566778888899987 889999887633211 122233444444 67888999875 355689
Q ss_pred hHHHHHHHHHHhcCCCCE--EEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCc
Q 012104 106 GSPANFAAYTAVLEPHDR--IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPK 183 (471)
Q Consensus 106 Gt~A~~~~~~all~pGD~--Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pk 183 (471)
|++|+.+++.+++++||+ |++.++.|....... ......| .+++.++. +++.+|+++++++ ..+++
T Consensus 72 g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~------~~~~~~g--~~~~~v~~--~~~~~d~~~l~~~--~~~~~ 139 (359)
T 3pj0_A 72 GTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD------GLKELQQ--ITPLLLGT--ANQLLTIDDIKSL--REPVS 139 (359)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHHC--CEEEECSC--TTSCCCHHHHHTC--SSCCS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc------hHHHhcC--ceEEecCC--cCCCcCHHHHHhc--cCCce
Confidence 999999999999999997 444443332211100 0001223 34455543 4578999999987 45789
Q ss_pred EEEE-c-CCCC-CccccHHHH---HHHHHHhCCEEEEeccccchhh-ccccCCCCC-CCccEEEeCCCCcCCCCCeEEEE
Q 012104 184 LIIC-G-GSAY-PRDWDYARF---RAVADKCGALLLCDMAHISGLV-AAQEAANPF-EYCHIVTTTTHKSLRGPRAGMIF 255 (471)
Q Consensus 184 lIi~-~-~s~~-g~~~d~~~i---~~ia~~~g~~livD~a~~~glv-~~g~~~~p~-~~aDiv~~s~~K~l~GprgG~i~ 255 (471)
+|++ + +|++ |..++.+++ +++|+++|++|++|++|..+.. ..+..+.++ .++|+++.|+||++.||.||+++
T Consensus 140 ~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~ 219 (359)
T 3pj0_A 140 SVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILA 219 (359)
T ss_dssp EEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEE
T ss_pred EEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEE
Confidence 8875 3 4565 688887666 8999999999999999864432 112211112 25799999999999888777777
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~- 332 (471)
.++ ++.+++... .+.+..........++. .+++.. .+..++..++++++.+.|++.
T Consensus 220 ~~~---------------~l~~~~~~~~~~~~~~~~~~~~~~~a~~-~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~ 278 (359)
T 3pj0_A 220 GND---------------DFVQEAKIWKRRYGGDLISLYPYILSAD-YYFEKR-----IGKMAEYFEAAKGLAERFNSCS 278 (359)
T ss_dssp ECH---------------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHHH-----GGGHHHHHHHHHHHHHHHHTST
T ss_pred CCH---------------HHHHHHHHHHHHhCCCcchhHHHHHHHH-HHHHHH-----HHHhHHHHHHHHHHHHHHhhCC
Confidence 776 555555431 12111111122222222 344332 134456678889999999987
Q ss_pred CceEeeCCCCCeeEEEEccCC-CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHH
Q 012104 333 GYSLVTGGTENHLVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 411 (471)
Q Consensus 333 g~~i~~~~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~ 411 (471)
|+++...+..++++|+++... +.+..++.+.|.++||.+.++..|+.+ ..+.+|+++..... ....+++++..+.
T Consensus 279 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~---~~~~~r~~i~~~~~-~~~~e~l~~~l~~ 354 (359)
T 3pj0_A 279 GVKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSA---DVCAFEVSVGDAFA-EIPAKNLELVFRC 354 (359)
T ss_dssp TEEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEET---TEEEEEEECCTTGG-GSCHHHHHHHHHH
T ss_pred CceeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCC---CceEEEEEecCccc-cCCHHHHHHHHHH
Confidence 888753345566778877532 123567888899999999987654321 24679997642211 1346677766666
Q ss_pred HHHH
Q 012104 412 LHRA 415 (471)
Q Consensus 412 i~~~ 415 (471)
|.++
T Consensus 355 l~~~ 358 (359)
T 3pj0_A 355 LEKE 358 (359)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 137
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=1.3e-22 Score=211.52 Aligned_cols=304 Identities=12% Similarity=0.033 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-CCCCEEEEeCCCCCCcccccccccCCccceecccee
Q 012104 76 DEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL-EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (471)
Q Consensus 76 ~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all-~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~ 154 (471)
..+++...+++.+.+|.+.+.- ..+++++|++|+..++.+++ +|||+|++.+|.|.++.. .+...| .
T Consensus 137 ~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~---------~~~~~g--~ 204 (500)
T 3tcm_A 137 HGLRDAIASGIASRDGFPANAD-DIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSA---------SIALHG--G 204 (500)
T ss_dssp HHHHHHHHHHHHHHHSSCCCGG-GEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHH---------HHHHTT--C
T ss_pred HHHHHHHHHHHHhhcCCCCCcc-cEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHH---------HHHHcC--C
Confidence 3455444566666666432211 23556677889999999998 899999999999987642 122344 3
Q ss_pred EEEeeeecCC-CCCCCHHHHHHHhhhC-----CCcEEE-Ec-CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhh
Q 012104 155 ESLPYKVNSS-TGYIDYDKLEEKALDF-----RPKLII-CG-GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLV 223 (471)
Q Consensus 155 ~~~~~~v~~~-~~~iD~~~le~~~~~~-----~pklIi-~~-~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv 223 (471)
+++.++++++ ++.+|+++|++.+++. ++++|+ ++ +||+|.+++.+ +|.++|+++|+++++|++|. +++
T Consensus 205 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~-~~~ 283 (500)
T 3tcm_A 205 ALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQ-ENI 283 (500)
T ss_dssp EEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-TCB
T ss_pred EEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-ccc
Confidence 5566666654 4699999999998753 678776 44 78899998765 55566999999999999997 555
Q ss_pred cccc-CCCCC----------C-Cc-cEEEeCCCCcC---CCCCeEEEEe---eCCCCCCCCCCCCCcccchHhhhhhcCC
Q 012104 224 AAQE-AANPF----------E-YC-HIVTTTTHKSL---RGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAVF 284 (471)
Q Consensus 224 ~~g~-~~~p~----------~-~a-Div~~s~~K~l---~GprgG~i~~---~~~~~~~~~~~~~i~~~~l~~~i~~~~~ 284 (471)
+.+. ...++ . .. .+++.|+||++ +|.|+||+++ ++ ++.+.+.....
T Consensus 284 ~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~---------------~~~~~l~~~~~ 348 (500)
T 3tcm_A 284 YVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSA---------------PVREQIYKIAS 348 (500)
T ss_dssp CCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCT---------------THHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCH---------------HHHHHHHHHHh
Confidence 5322 11121 1 11 26788999987 5889999988 44 45554443221
Q ss_pred CCCCCCCcHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCC-
Q 012104 285 PSLQGGPHNHQIGALAVALKQA---------STPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPL- 353 (471)
Q Consensus 285 ~~~~g~p~~~~iaa~a~al~~~---------~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~- 353 (471)
...+++....++++.++... ...+..+..+++.++++.|.+.|++. |+++. .+..+.++|+++...
T Consensus 349 --~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~lp~ 425 (500)
T 3tcm_A 349 --VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCN-EAEGAMYVFPQICLPQ 425 (500)
T ss_dssp --TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBTTEECCEECCCH
T ss_pred --cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEe-cCCeEEEEeeeecCch
Confidence 11234444444554444310 11244566777888999999999988 88875 445566777554311
Q ss_pred ---------CCCHHH--HHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 354 ---------GLTGNK--VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 354 ---------~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++..+. +.++|++.||.+.+++.|+.. ...+++|+++. + ++++++++.+.|.++++.
T Consensus 426 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~--~g~~~iRis~~--~----~~e~i~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 426 KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV--PGTWHFRCTIL--P----QEDKIPAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC--TTCCBEEEESC--S----CTTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--CCCCEEEEEEC--C----CHHHHHHHHHHHHHHHHH
Confidence 222233 358888999999998776531 23568999985 2 356787777777776654
No 138
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.92 E-value=9.4e-24 Score=225.50 Aligned_cols=292 Identities=15% Similarity=0.067 Sum_probs=203.5
Q ss_pred HHHHHHHhcCCCCCCCceeeecCCh-HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSG-SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK 160 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sG-t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~ 160 (471)
++++++++||+++ + +..++| +.||.+++.++++|||+|++.++.|.++.. .+...|. +++.++
T Consensus 200 aE~~lA~~fGa~~----a-~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~---------~l~lsGa--~pv~v~ 263 (715)
T 3n75_A 200 AEQYIARVFNADR----S-YMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTH---------LMMMSDV--TPIYFR 263 (715)
T ss_dssp HHHHHHHHHTCSE----E-EEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH---------HHHHSCC--EEEEEC
T ss_pred HHHHHHHHhCCCC----c-eEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHH---------HHHHcCC--EEEEEe
Confidence 4578999999986 3 444677 489999999999999999999988776542 1234443 444443
Q ss_pred ecCCCCC----C-----CHHHHHHHhhhC-C---CcEE-EEcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccc
Q 012104 161 VNSSTGY----I-----DYDKLEEKALDF-R---PKLI-ICGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQ 226 (471)
Q Consensus 161 v~~~~~~----i-----D~~~le~~~~~~-~---pklI-i~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g 226 (471)
.+.+++. + |+++|+++++++ + |++| +++.|++|.+.|+++|.++|++++ +++|+||++|+.+.+
T Consensus 264 ~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 264 PTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp CCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSG
T ss_pred ccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCC
Confidence 3222222 3 999999999753 2 3344 566789999999999999998653 799999998875544
Q ss_pred cCC--CCCC-C--ccEE---EeCCCCcCCCC-CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHH
Q 012104 227 EAA--NPFE-Y--CHIV---TTTTHKSLRGP-RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297 (471)
Q Consensus 227 ~~~--~p~~-~--aDiv---~~s~~K~l~Gp-rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~ia 297 (471)
..+ +++. + +|++ ++|+||+|+|+ .+|++.+++++ ...+++.+......++|+...+|
T Consensus 342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i--------------~~~~~~~~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 342 IYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV--------------NEETFNEAYMMHTTTSPHYGIVA 407 (715)
T ss_dssp GGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCC--------------CHHHHHHHHHHTSCSSCCHHHHH
T ss_pred ccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchh--------------hHHHHHHHHHhhcCCCchHHHHH
Confidence 333 3443 2 6865 99999999998 67899888742 22344444333345789999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-----C--ceEeeCC----------------------------CC
Q 012104 298 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-----G--YSLVTGG----------------------------TE 342 (471)
Q Consensus 298 a~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-----g--~~i~~~~----------------------------~~ 342 (471)
++.+|++.+...+.+++.++..++++++++.|++. | |+++... .|
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~D 487 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLD 487 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEEC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCC
Confidence 99999888764345678899999999999999764 2 3443210 01
Q ss_pred CeeEEEEccC---------CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHH
Q 012104 343 NHLVLWDLRP---------LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLH 413 (471)
Q Consensus 343 ~~~~~v~~~~---------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~ 413 (471)
.--++++.+. .|+++.++.+.|+++||.+.... ...+=+ +.+.|.++++++++.++|.
T Consensus 488 p~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------~~~vl~----l~s~g~~~~~~~~L~~aL~ 554 (715)
T 3n75_A 488 PIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------PYNLLF----LFSIGIDKTKALSLLRALT 554 (715)
T ss_dssp TTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---------TTEEEE----ECCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---------CCcEEE----EeCCCCCHHHHHHHHHHHH
Confidence 1124444433 26888999999999999987632 122222 4556777899999999988
Q ss_pred HHHHH
Q 012104 414 RAVTL 418 (471)
Q Consensus 414 ~~l~~ 418 (471)
+.-+.
T Consensus 555 ~~~~~ 559 (715)
T 3n75_A 555 DFKRA 559 (715)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 139
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.92 E-value=7e-24 Score=211.00 Aligned_cols=328 Identities=12% Similarity=0.044 Sum_probs=211.2
Q ss_pred CCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCC----cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCCh-
Q 012104 32 RGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYG----GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSG- 106 (471)
Q Consensus 32 ~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~----g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sG- 106 (471)
..+.+.+++..+|+.|++++.+.+.+. . .++...|+ .....+..+ ..++++++++|++..+. + +.++++
T Consensus 3 ~~~~~~~g~~~~p~~v~~a~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~l~~~la~~~g~~~~~~-v-~~~~g~g 76 (360)
T 1w23_A 3 QVFNFNAGPSALPKPALERAQKELLNF-N--DTQMSVMELSHRSQSYEEVHE-QAQNLLRELLQIPNDYQ-I-LFLQGGA 76 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS-T--TSSSCGGGSCTTSHHHHHHHH-HHHHHHHHHHTCCTTEE-E-EEESSHH
T ss_pred ceEeecCCCcCCCHHHHHHHHHHhhhh-c--cccccccccCCCCHHHHHHHH-HHHHHHHHHhCCCCCce-E-EEECCcc
Confidence 357788888888999999998877442 1 12211111 112222333 35678999999863211 2 334444
Q ss_pred HHHHHHHHHHhcCC---CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHH-HhhhCCC
Q 012104 107 SPANFAAYTAVLEP---HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEE-KALDFRP 182 (471)
Q Consensus 107 t~A~~~~~~all~p---GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~-~~~~~~p 182 (471)
++|+.+++.+++.+ ||.|++..+.|. +. ..+...| +++.++++++++.+|++++++ .+. .++
T Consensus 77 t~al~~~~~~l~~~~~~g~~vi~~~~~~~---~~-------~~~~~~g---~~~~v~~~~~~~~~d~~~l~~~~i~-~~~ 142 (360)
T 1w23_A 77 SLQFTMLPMNLLTKGTIGNYVLTGSWSEK---AL-------KEAKLLG---ETHIAASTKANSYQSIPDFSEFQLN-END 142 (360)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHH---HH-------HHHHTTS---EEEEEEECGGGTSCSCCCGGGCCCC-TTE
T ss_pred hHHHHHHHHHhcCCCCcccEEEecchhHH---HH-------HHHHHhC---CeEEeecccccCcCCccchHhhccC-CCC
Confidence 78999999999876 556665543322 10 0112233 455566664456789999988 764 478
Q ss_pred cEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCCCe-EEEEeeCC
Q 012104 183 KLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRA-GMIFYRKG 259 (471)
Q Consensus 183 klIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~ 259 (471)
|+|++. +||+|..+| +|++++|++|++|++|+.|. .+.++...|++++|+||++. |.| |+++++++
T Consensus 143 k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~-----~~~~~~~~di~~~s~sK~~~-~~G~G~~~~~~~ 211 (360)
T 1w23_A 143 AYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILS-----RPLKVNQFGMIYAGAQKNLG-PSGVTVVIVKKD 211 (360)
T ss_dssp EEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTS-----SCCCGGGCSEEEEETTTTTS-CTTCEEEEEEHH
T ss_pred CEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCC-----CCcCcccCCEEEEEcccccC-CCCcEEEEEcHH
Confidence 888754 688999877 34448999999999997542 22234334899999999884 555 99988864
Q ss_pred CCCCCCCCCCCcccchHhhhhhcC-----------CCCCCCCCcHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHH
Q 012104 260 PKPPKKGQPEGAVYDFEDKINFAV-----------FPSLQGGPHNHQIGALAVALKQASTP-AFKAYAKQVKANAVALGN 327 (471)
Q Consensus 260 ~~~~~~~~~~i~~~~l~~~i~~~~-----------~~~~~g~p~~~~iaa~a~al~~~~~~-~~~~~~~~~~~na~~l~~ 327 (471)
+ .+++.... .....++++...++++..+++.+... ++++..++..++++++.+
T Consensus 212 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (360)
T 1w23_A 212 L---------------LNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYD 276 (360)
T ss_dssp H---------------HCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 2 11111100 11223566777777777777665433 567888889999999999
Q ss_pred HHHcCC-c-eEeeCC--CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHH
Q 012104 328 YLTGKG-Y-SLVTGG--TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEK 403 (471)
Q Consensus 328 ~L~~~g-~-~i~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~ 403 (471)
.|++.+ + .....+ ..++++++++.. +.+..++.+.|.+.||.+.++.. ..+.+||++...+ +++
T Consensus 277 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~-------~~~~iRis~~~~~----~~~ 344 (360)
T 1w23_A 277 TIDESNGFYVGHAEKGSRSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLNGHR-------SVGGCRASIYNAV----PID 344 (360)
T ss_dssp HHHTTTTSSEESSCGGGBCSSEEEEECSS-HHHHHHHHHHHHHTTEESCBCCT-------TTCSEEEECCTTS----CHH
T ss_pred HHHHccCcccccCCchhccCcEEEEEcCC-CccHHHHHHHHHHCCeeeecCCC-------CCCeEEEEecCCC----CHH
Confidence 999875 5 543111 234477887743 22345677778889999865431 1468999986543 489
Q ss_pred HHHHHHHHHHHHHH
Q 012104 404 DFEQIGEFLHRAVT 417 (471)
Q Consensus 404 d~~~l~~~i~~~l~ 417 (471)
+++++.+.|.++++
T Consensus 345 ~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 345 ACIALRELMIQFKE 358 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988765
No 140
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.91 E-value=1e-22 Score=203.36 Aligned_cols=320 Identities=13% Similarity=0.056 Sum_probs=209.5
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHH
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPA 109 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A 109 (471)
..|+|..+++. .++.+++++...+... .+|+.. ....+ ++.+++++|++.+ ..+.+++|++|
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~-------~~~~l----~~~la~~~~~~~~---~v~~~~g~~~a 88 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCI--ERYPDA-------DYFHL----HQALARHHQVPAS---WILAGNGETES 88 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGG--GSCCCT-------TCHHH----HHHHHHHHTSCGG---GEEEESSHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHh--hcCCCC-------CHHHH----HHHHHHHHCcCHH---HEEECCCHHHH
Confidence 46888777654 5789999988776431 233221 11233 3567788888653 23446667789
Q ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCC-HHHHHHHhhhCCCcEEE-E
Q 012104 110 NFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYID-YDKLEEKALDFRPKLII-C 187 (471)
Q Consensus 110 ~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD-~~~le~~~~~~~pklIi-~ 187 (471)
+.+++.++ +||+|++.+|.|.++.. .+...|. +++.+++++++ .++ ++++.+.+. .++++|+ +
T Consensus 89 l~~~~~~~--~gd~vl~~~p~y~~~~~---------~~~~~g~--~~~~v~~~~~~-~~~~l~~~~~~~~-~~~~~v~i~ 153 (364)
T 1lc5_A 89 IFTVASGL--KPRRAMIVTPGFAEYGR---------ALAQSGC--EIRRWSLREAD-GWQLTDAILEALT-PDLDCLFLC 153 (364)
T ss_dssp HHHHHHHH--CCSEEEEEESCCTHHHH---------HHHHTTC--EEEEEECCGGG-TTCCCTTHHHHCC-TTCCEEEEE
T ss_pred HHHHHHHc--CCCeEEEeCCCcHHHHH---------HHHHcCC--eEEEEeCCccc-ccchhHHHHHhcc-CCCCEEEEe
Confidence 99999988 78999999998876532 1222343 44555555321 233 355555443 4678766 4
Q ss_pred c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCC-CC--CccEEEeCCCCcC--CCCCeEEEE-ee
Q 012104 188 G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANP-FE--YCHIVTTTTHKSL--RGPRAGMIF-YR 257 (471)
Q Consensus 188 ~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p-~~--~aDiv~~s~~K~l--~GprgG~i~-~~ 257 (471)
+ +||+|..+| +++|+++|+++|++|++|++|. ++...+..... ++ ..+++++|+||++ +|.|.|+++ .+
T Consensus 154 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 232 (364)
T 1lc5_A 154 TPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFI-DFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSD 232 (364)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTG-GGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcCh-hhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECC
Confidence 5 678999998 7888899999999999999997 44432211111 12 4579999999996 677889998 66
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceE
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSL 336 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i 336 (471)
+ ++.+.+.....++ +++...+++...+++. ...+++..+++.++++.+.+.|++. |+++
T Consensus 233 ~---------------~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 292 (364)
T 1lc5_A 233 D---------------AAMARMRRQQMPW---SVNALAALAGEVALQD--SAWQQATWHWLREEGARFYQALCQLPLLTV 292 (364)
T ss_dssp H---------------HHHHHHHHHSCTT---CSCHHHHHHHHHGGGC--HHHHHHHHHHHHHHHHHHHHHHHTSTTEEE
T ss_pred H---------------HHHHHHHHhCCCC---CCCHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 5 5666665443222 3344444444444433 2345777778888899999999987 8887
Q ss_pred eeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 337 VTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 337 ~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
. ++ ...++++++.. +..++.+.|.++||.+.++..++. ..++++||++. .++|++++.+.|.+++
T Consensus 293 ~-~~-~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~g~~~~~---~~~~~iRis~~-------~~~~~~~l~~~l~~~~ 357 (364)
T 1lc5_A 293 Y-PG-RANYLLLRCER---EDIDLQRRLLTQRILIRSCANYPG---LDSRYYRVAIR-------SAAQNERLLAALRNVL 357 (364)
T ss_dssp C-CC-SSSEEEEEESC---TTCCHHHHHHTTTEECEECTTSTT---CCTTEEEEECC-------CHHHHHHHHHHHHHHC
T ss_pred C-CC-CCeEEEEECCC---cHHHHHHHHHHCCcEEeeCcccCC---CCCCEEEEEeC-------CHHHHHHHHHHHHHHh
Confidence 5 33 34456777753 234577777788999988754421 23579999972 2688999999998876
Q ss_pred HH
Q 012104 417 TL 418 (471)
Q Consensus 417 ~~ 418 (471)
+.
T Consensus 358 ~~ 359 (364)
T 1lc5_A 358 TG 359 (364)
T ss_dssp --
T ss_pred hc
Confidence 54
No 141
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.91 E-value=1.4e-22 Score=204.23 Aligned_cols=317 Identities=14% Similarity=0.115 Sum_probs=209.7
Q ss_pred cCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh
Q 012104 38 ASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV 117 (471)
Q Consensus 38 ~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al 117 (471)
.+...+++++++++...+...+ |+ ......++| +.+++++|++. .+.++|||+|+..++.++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~----~~la~~~~~~~-----~i~~~sGt~a~~~al~~~ 69 (390)
T 3b8x_A 8 LASSTWDDLEYKAIQSVLDSKM--------FT-MGEYVKQYE----TQFAKTFGSKY-----AVMVSSGSTANLLMIAAL 69 (390)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTC--------CS-SCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHcCC--------CC-CChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHH
Confidence 4667789999999988775421 11 123344444 67888999873 477899999999999999
Q ss_pred -------cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCC
Q 012104 118 -------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGS 190 (471)
Q Consensus 118 -------l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s 190 (471)
++|||+|+++.++|.++.. .+...| .+++.++++++++.+|++++++.+.+ ++++|++. +
T Consensus 70 ~~~~~~~~~~g~~Vi~~~~~~~~~~~---------~~~~~g--~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~ 136 (390)
T 3b8x_A 70 FFTKKPRLKKGDEIIVPAVSWSTTYY---------PLQQYG--LRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV-N 136 (390)
T ss_dssp TSSSSCSCCTTCEEEEESSSCHHHHH---------HHHHTT--CEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE-C
T ss_pred HhhhhcCCCCcCEEEECCCCcHHHHH---------HHHHcC--CEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE-C
Confidence 8999999999998876532 122334 46667777766689999999999864 68888764 3
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCC--CCcCCCCCeEEEEeeCCCCCCCCCC
Q 012104 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTT--HKSLRGPRAGMIFYRKGPKPPKKGQ 267 (471)
Q Consensus 191 ~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~--~K~l~GprgG~i~~~~~~~~~~~~~ 267 (471)
++|...|+++|+++|+++|++|++|++|+.|....+. .+. ..|+.++|+ +|.+.+++||+++++++
T Consensus 137 ~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~g~~~~~~~~s~~~~k~~~~g~gG~~~~~~~-------- 205 (390)
T 3b8x_A 137 LLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNK---CAGTFGLMGTFSSFYSNHIATMEGGCIVTDDE-------- 205 (390)
T ss_dssp GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTE---ETTSSSSEEEEECCTTSSSCSSSCEEEEESCH--------
T ss_pred CccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCc---ccccccceEEEEccCCCCCccCCceEEEeCCH--------
Confidence 5677789999999999999999999999877654321 111 235555443 45577778899998763
Q ss_pred CCCcccchHhhhhhcCC------------------------------CCC-CCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 012104 268 PEGAVYDFEDKINFAVF------------------------------PSL-QGGPHNHQIGALAVALKQASTPAFKAYAK 316 (471)
Q Consensus 268 ~~i~~~~l~~~i~~~~~------------------------------~~~-~g~p~~~~iaa~a~al~~~~~~~~~~~~~ 316 (471)
++.+++..... .+. .+.+....+++++ ++ ..+++..+
T Consensus 206 ------~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~-~l-----~~l~~~~~ 273 (390)
T 3b8x_A 206 ------EIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIE-QL-----KKLPRFIS 273 (390)
T ss_dssp ------HHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHH-HH-----HHHHHHHH
T ss_pred ------HHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHH-HH-----HHHHHHHH
Confidence 22222211000 011 1122222222222 22 34667888
Q ss_pred HHHHHHHHHHHHHHcC-CceEeeCC--CCCeeEEEEccCC-CCCHHHHHHHHhhcCeEeccCCcCCC-CC-CC-------
Q 012104 317 QVKANAVALGNYLTGK-GYSLVTGG--TENHLVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGD-SS-AL------- 383 (471)
Q Consensus 317 ~~~~na~~l~~~L~~~-g~~i~~~~--~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~-~~-~~------- 383 (471)
+..++++++.+.|++. |+++.... ...+.+++.+... +.+.+++.+.|.+.||.++....+.. .. +.
T Consensus 274 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~ 353 (390)
T 3b8x_A 274 VRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYT 353 (390)
T ss_dssp HHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCC
Confidence 8899999999999887 78775322 1223355555432 56788899999999999986321100 01 10
Q ss_pred -----------CCCeeEEecCCCCCcCCCHHHHHHHHHHH
Q 012104 384 -----------APGGVRIGTPAMTSRGLLEKDFEQIGEFL 412 (471)
Q Consensus 384 -----------~~~~iRig~~~~t~~g~~~~d~~~l~~~i 412 (471)
..+.|||++... ++++|++++++.|
T Consensus 354 ~~~~~~~~~~~~~~~l~l~~~~~----~t~~di~~i~~~l 389 (390)
T 3b8x_A 354 VHNNVDNAEYLDKNGLFVGNHQI----ELFDEIDYLREVL 389 (390)
T ss_dssp ESSCCHHHHHHHHHEEEEECCSS----CCHHHHHHHHHHT
T ss_pred CcCCChHHHHHhcCEEEeeCCCC----CCHHHHHHHHHhh
Confidence 013699987544 4589999999876
No 142
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.91 E-value=3.7e-23 Score=214.07 Aligned_cols=319 Identities=11% Similarity=-0.005 Sum_probs=206.5
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCC------CceeeecCChHHHHHHHHHHhc-------------------CCCCEEE
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQ------WGVNVQPYSGSPANFAAYTAVL-------------------EPHDRIM 125 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~------~~~~v~~~sGt~A~~~~~~all-------------------~pGD~Vl 125 (471)
......++|+.+.+++++++|.+... .+..+.+++||+||+.++.+.. .|+++|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 34667789999999999999987521 1124667899999998887652 2457899
Q ss_pred EeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCC-----CcEEEEc--CCCCCccccH
Q 012104 126 GLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFR-----PKLIICG--GSAYPRDWDY 198 (471)
Q Consensus 126 ~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~-----pklIi~~--~s~~g~~~d~ 198 (471)
+....|.+.. +.+...|. +++.++++ +++ +|+++|++++.+.+ |.+|++. .+++|.+.|+
T Consensus 187 ~s~~~H~s~~---------~~~~~~g~--~~~~v~~d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l 253 (475)
T 3k40_A 187 CSDQAHSSVE---------RAGLLGGV--KLRSVQSE-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYL 253 (475)
T ss_dssp EETTSCHHHH---------HHHHHHTC--EEEEECCB-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCH
T ss_pred ECCCchHHHH---------HHHHHcCC--ceEEEECC-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCH
Confidence 9987765432 12233443 55666667 457 99999999987532 5656543 6778999999
Q ss_pred HHHHHHHHHhCCEEEEeccccchhhccccCCC---CCCCccEEEeCCCCcCCCCCe-EEEEeeCCC--CCCCCCCCCCcc
Q 012104 199 ARFRAVADKCGALLLCDMAHISGLVAAQEAAN---PFEYCHIVTTTTHKSLRGPRA-GMIFYRKGP--KPPKKGQPEGAV 272 (471)
Q Consensus 199 ~~i~~ia~~~g~~livD~a~~~glv~~g~~~~---p~~~aDiv~~s~~K~l~Gprg-G~i~~~~~~--~~~~~~~~~i~~ 272 (471)
++|+++|+++|+++++|++|+.+......... .+..+|++++++||++.+|.| |+++++++. ........ .
T Consensus 254 ~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~--~- 330 (475)
T 3k40_A 254 DECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDP--L- 330 (475)
T ss_dssp HHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC------------
T ss_pred HHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCc--c-
Confidence 99999999999999999999866443322211 223579999999999988865 788777641 00000000 0
Q ss_pred cchHhh-----hhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeE
Q 012104 273 YDFEDK-----INFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLV 346 (471)
Q Consensus 273 ~~l~~~-----i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~ 346 (471)
| +... .+. .....+++.. ..+.++..+++.+...++++..++..++++++++.|++. |++++.. ....++
T Consensus 331 y-l~~~~~~~~~~~-~~~~~~~sr~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~-~~~~iv 406 (475)
T 3k40_A 331 Y-LKHDMQGSAPDY-RHWQIPLGRR-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE-INMGLV 406 (475)
T ss_dssp --------------------CCCGG-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC-CBTTEE
T ss_pred c-cCCCcCCCCCCc-ccccccCCCc-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEE
Confidence 0 0000 000 0001122211 233455556666656678899999999999999999987 9998643 345567
Q ss_pred EEEccCCCCCHHHHHHHHhhcCeEe-ccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 347 LWDLRPLGLTGNKVEKLCDLCNITV-NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 347 ~v~~~~~~~~~~~~~~~L~~~gI~v-~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++.+.+.+....++.+.|.+.|+.+ .+.. + .....+|+++... ..+++|++++.+.|.++.+.
T Consensus 407 ~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~-----~g~~~lR~~~~~~---~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 407 CFRLKGSNERNEALLKRINGRGHIHLVPAK-I-----KDVYFLRMAICSR---FTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EEEESSCHHHHHHHHHHHHHHTSCBCEEEE-E-----TTEEEEEEECCCT---TCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHhCCcEEEEeeE-E-----CCEEEEEEEeCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 7776542222456766776666643 3321 1 1246899996332 23589999999999887654
No 143
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.91 E-value=2.9e-23 Score=210.87 Aligned_cols=361 Identities=11% Similarity=-0.030 Sum_probs=211.9
Q ss_pred HHHHHHHHHHH--hccCCeeEecCCCCCc----HHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 012104 18 EIHDLIEKEKR--RQCRGIELIASENFTS----FAVIEALGSALTNKY----SEGMPGNRYYGGNEFIDEIENLCRSRAL 87 (471)
Q Consensus 18 ~~~~~~~~e~~--~~~~~i~li~s~n~~s----~~v~~a~~~~l~~~~----~~g~~~~r~~~g~~~~~~lE~~~~~~~~ 87 (471)
.+...+.+-.. ...+.++|..+.+... +.+.+++...+.+.. ..+|+. ......+.+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~------~~g~~~lr~~ia~~~~ 89 (417)
T 3g7q_A 16 GITRLMEDLNDGLRTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDG------PQGKTALLNALAVLLR 89 (417)
T ss_dssp CHHHHHHHHHC-----CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTC------TTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCC------CCCcHHHHHHHHHHHH
Confidence 34455543322 2246788877765553 345556555543321 012322 2233445444445555
Q ss_pred HhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCC-----EEEEe-CCCCCCcccccccccCCccc-eeccceeEEEeee
Q 012104 88 QTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHD-----RIMGL-DLPSGGHLTHGYYTSGGKKI-SATSIYFESLPYK 160 (471)
Q Consensus 88 ~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD-----~Vl~~-~~~~~g~~s~~~~~~~g~~~-~~~g~~~~~~~~~ 160 (471)
+.+|...+.- -.+.+++|++|+.+++.++++||| +|+++ +|.|.++..... .. ...+....+..++
T Consensus 90 ~~~g~~~~~~-~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~------~~~~~~~~~~~~~~~~ 162 (417)
T 3g7q_A 90 ETLGWDIEPQ-NIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGL------EDDLFVSARPNIELLP 162 (417)
T ss_dssp HHHCCCCCGG-GEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----------CCEEECCCEEEEEG
T ss_pred HHhCCCCCcc-cEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhcc------chhhhccccCcccccC
Confidence 5555432211 234466778899999999999988 89987 888876542110 00 1122222333332
Q ss_pred ecCCCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchh---hccccCCCCC
Q 012104 161 VNSSTGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGL---VAAQEAANPF 232 (471)
Q Consensus 161 v~~~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~gl---v~~g~~~~p~ 232 (471)
.+..++.+|+++++ +. .++++|++ + +||+|..++ +++|+++|+++|+++|+|++|...+ .+.+..+ ..
T Consensus 163 ~~~~~~~~d~~~l~--~~-~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~-~~ 238 (417)
T 3g7q_A 163 EGQFKYHVDFEHLH--IG-EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARP-LW 238 (417)
T ss_dssp GGEEEEECCGGGCC--CC-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC-CC
T ss_pred CcccccccCHHHhc--cc-cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccccccccccccc-CC
Confidence 22113568998887 43 46787764 4 789999998 7788889999999999999996321 1111111 11
Q ss_pred CCccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhcc-HH
Q 012104 233 EYCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST-PA 310 (471)
Q Consensus 233 ~~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~-~~ 310 (471)
...+++++|+||+ ++|.|.|++++++ ++.+.+.........+++.. ..++.+.++..... ..
T Consensus 239 ~~~~i~~~s~sK~~~~G~r~G~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 302 (417)
T 3g7q_A 239 NPNIILCMSLSKLGLPGSRCGIIIAND---------------KTITAIANMNGIISLAPGGM-GPAMMCEMIKRNDLLRL 302 (417)
T ss_dssp CTTEEEEEESGGGTCTTSCCEEEECCH---------------HHHHHHHHHHHHHCCCCCSH-HHHHHHHHHHTTCHHHH
T ss_pred CCCEEEEEechhccCCCcceEEEEeCH---------------HHHHHHHHhhcceeeCCCcH-HHHHHHHHHcCcchHHH
Confidence 2456899999997 5677899998876 45555443221111122222 22333334433211 11
Q ss_pred HHH-HHHHHHHHHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCC--C
Q 012104 311 FKA-YAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSA--L 383 (471)
Q Consensus 311 ~~~-~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~--~ 383 (471)
..+ ..+++.++.+.+.+.|.+. |+.+. .+..++++|+++...+++..++.+.|.++||.+.++..++.... .
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~ 381 (417)
T 3g7q_A 303 SETVIKPFYYQRVQQTIAIIRRYLSEERCLIH-KPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPW 381 (417)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEE-CCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCceee-CCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCcccc
Confidence 122 3445566667777777652 57764 34556788999875567888998889999999998765542211 0
Q ss_pred --CCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 384 --APGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 384 --~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
..+++||+++. +++++++..+.|.++++.
T Consensus 382 ~~~~~~iRis~~~------~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 382 PHTHQCMRMNYVP------EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp GGGGGEEEEESCS------CHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEecC------CHHHHHHHHHHHHHHHHH
Confidence 14789999842 478999999999888764
No 144
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.91 E-value=9.2e-23 Score=202.42 Aligned_cols=321 Identities=14% Similarity=0.106 Sum_probs=207.0
Q ss_pred CeeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHH
Q 012104 33 GIELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111 (471)
Q Consensus 33 ~i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~ 111 (471)
.+.|..+. ...++.|++++...+.+ |..+. +.. .+.+..++++++++|++.+ -.+.++||++|+.
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~------g~~----~~~~~~~~~l~~~~g~~~~---~v~~~~g~t~a~~ 80 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMT-QHAGY------GQD----SHCAKAARLIGELLERPDA---DVHFISGGTQTNL 80 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTC-CCCST------TCS----HHHHHHHHHHHHHHTCTTS---EEEEESCHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhh-ccccc------ccc----HHHHHHHHHHHHHhCCCCc---cEEEeCCchHHHH
Confidence 55664443 34689999999887743 32111 112 2333445788899997753 2355778899999
Q ss_pred HHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhC------CCcEE
Q 012104 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDF------RPKLI 185 (471)
Q Consensus 112 ~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~------~pklI 185 (471)
+++.++++|||+|++.++.|.++.... .+...|. +++.++.+ ++.+|+++|++.+.+. ++++|
T Consensus 81 ~~~~~~~~~gd~vl~~~~~~~~~~~~~-------~~~~~g~--~~~~v~~~--~~~~d~~~l~~~l~~~~~~~~~~~~~v 149 (359)
T 1svv_A 81 IACSLALRPWEAVIATQLGHISTHETG-------AIEATGH--KVVTAPCP--DGKLRVADIESALHENRSEHMVIPKLV 149 (359)
T ss_dssp HHHHHHCCTTEEEEEETTSHHHHSSTT-------HHHHTTC--CEEEECCT--TSCCCHHHHHHHHHHSCSTTSCEEEEE
T ss_pred HHHHHHhCCCCEEEEcccchHHHHHHH-------HHhcCCC--eeEEEeCC--CCeecHHHHHHHHHHHHhccCCCceEE
Confidence 999999999999999999887664210 1223343 44555544 5789999999999764 27877
Q ss_pred EE-cCCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC------CCccEEEeCCCCcCCCCCe-EEE
Q 012104 186 IC-GGSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF------EYCHIVTTTTHKSLRGPRA-GMI 254 (471)
Q Consensus 186 i~-~~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~------~~aDiv~~s~~K~l~Gprg-G~i 254 (471)
++ +.||+|..+| +++|+++|+++|+++++|++|. ++.. +..+... ..+|++++|+||+ .+|.+ |++
T Consensus 150 ~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~-~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l 226 (359)
T 1svv_A 150 YISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL-ASAL-SSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALI 226 (359)
T ss_dssp EEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTH-HHHH-TSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEE
T ss_pred EEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEccch-hhhh-cCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEE
Confidence 64 4678899988 7889999999999999999993 3221 1111111 1478999999997 56766 888
Q ss_pred EeeCCCCCCCCCCCCCcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
+++++ +.+.+.... .....+ ......++++.++ ...++++..+++.++++++.+.|+..
T Consensus 227 ~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~l~~~L~~~ 287 (359)
T 1svv_A 227 ILNDA---------------LKPNARHLIKQRGALMA-KGWLLGIQFEVLM---KDNLFFELGAHSNKMAAILKAGLEAC 287 (359)
T ss_dssp ECSGG---------------GCTTHHHHHHHTTCCCT-TTHHHHHHHHHHT---STTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEccc---------------HHHHHHHHHhcCCcccc-cchhhHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHhccC
Confidence 88763 222222210 111111 1122222332222 22356778888899999999999555
Q ss_pred CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc-CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHH
Q 012104 333 GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC-NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 411 (471)
Q Consensus 333 g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~-gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~ 411 (471)
|++++. +...+++|+++. .++.+.|.+. ||.+-.. . +...+++||+++..+ ++++++++.+.
T Consensus 288 ~~~~~~-~~~~~~~~~~~~------~~~~~~l~~~~gi~v~~~-~-----~~~~~~iRi~~~~~~----~~~~i~~~~~~ 350 (359)
T 1svv_A 288 GIRLAW-PSASNQLFPILE------NTMIAELNNDFDMYTVEP-L-----KDGTCIMRLCTSWAT----EEKECHRFVEV 350 (359)
T ss_dssp TCCBSS-CCSSSEECBEEE------HHHHHHHTTTEECEEEEE-E-----TTTEEEEEEECCTTC----CHHHHHHHHHH
T ss_pred CeEEcc-CCccceEEEEcC------HHHHHHHHHhcCEEEEec-c-----cCCCceEEEEccCcC----CHHHHHHHHHH
Confidence 888753 345566676653 3566666666 9998211 0 112468999865443 48999999999
Q ss_pred HHHHHH
Q 012104 412 LHRAVT 417 (471)
Q Consensus 412 i~~~l~ 417 (471)
|.++++
T Consensus 351 l~~~~~ 356 (359)
T 1svv_A 351 LKRLVA 356 (359)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 988764
No 145
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.91 E-value=5.2e-22 Score=207.13 Aligned_cols=309 Identities=15% Similarity=0.101 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--------CC-----C-EEEEeCCCCCCccccc
Q 012104 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--------PH-----D-RIMGLDLPSGGHLTHG 138 (471)
Q Consensus 73 ~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--------pG-----D-~Vl~~~~~~~g~~s~~ 138 (471)
.....+|+.+++++++++|++.+. ...+.+++||+||..++.++.. +| + +|++.++.|.++..
T Consensus 128 ~~~~~le~~~~~~la~~~g~~~~~-~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~-- 204 (504)
T 2okj_A 128 PVFVLMEQITLKKMREIVGWSSKD-GDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK-- 204 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSS-CEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH--
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCC-CCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHH--
Confidence 455678888889999999997311 1245577889999998888742 67 7 78888777654321
Q ss_pred ccccCCccceecccee-EEEeeeecCCCCCCCHHHHHHHhhhC-----CCcEEEEc--CCCCCccccHHHHHHHHHHhCC
Q 012104 139 YYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICG--GSAYPRDWDYARFRAVADKCGA 210 (471)
Q Consensus 139 ~~~~~g~~~~~~g~~~-~~~~~~v~~~~~~iD~~~le~~~~~~-----~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~ 210 (471)
.+...|.+. +++.++++ +++.+|+++|++.+.+. +|++|++. .|++|...|+++|+++|+++|+
T Consensus 205 -------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~ 276 (504)
T 2okj_A 205 -------AGAALGFGTDNVILIKCN-ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL 276 (504)
T ss_dssp -------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred -------HHHHcCCCcccEEEEecC-CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Confidence 122334333 45555666 46899999999998753 57877754 6789999999999999999999
Q ss_pred EEEEeccccchhhccccCCCC---CCCccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCCCCCCCcccchHhhhh----hc
Q 012104 211 LLLCDMAHISGLVAAQEAANP---FEYCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKIN----FA 282 (471)
Q Consensus 211 ~livD~a~~~glv~~g~~~~p---~~~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~----~~ 282 (471)
|+++|++|+.+.......... +.++|++++++||++.+|. +|+++++++ ++.+... ..
T Consensus 277 ~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~--------------~~~~~~~~~~~~~ 342 (504)
T 2okj_A 277 WLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEK--------------GILQGCNQMCAGY 342 (504)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESST--------------THHHHHHCCCCSS
T ss_pred EEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECH--------------HHHHHHhcCCCcc
Confidence 999999998554432211112 2368999999999988775 599988874 2221110 00
Q ss_pred CCCC--------------CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEee--CCCCCee
Q 012104 283 VFPS--------------LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT--GGTENHL 345 (471)
Q Consensus 283 ~~~~--------------~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~--~~~~~~~ 345 (471)
.+.+ .+++-.... .++..+++.+...++++..++..++++++.+.|++. |++++. .+..+.
T Consensus 343 l~~~~~~~~~~~~~~~~~~~~~rr~~~-l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~- 420 (504)
T 2okj_A 343 LFQPDKQYDVSYDTGDKAIQCGRHVDI-FKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTN- 420 (504)
T ss_dssp SCCSCCSSCGGGCCGGGSSCSSCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSC-
T ss_pred ccCCcccccCcCCcccCCCCCCCCccH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEE-
Confidence 0000 011100011 122223333334578888999999999999999986 899864 233333
Q ss_pred EEEEccCCC---CC------------HHHHHHHHhhcCe-EeccCCcCCCCCCCCCCeeEEecC-CCCCcCCCHHHHHHH
Q 012104 346 VLWDLRPLG---LT------------GNKVEKLCDLCNI-TVNKNAVFGDSSALAPGGVRIGTP-AMTSRGLLEKDFEQI 408 (471)
Q Consensus 346 ~~v~~~~~~---~~------------~~~~~~~L~~~gI-~v~~~~~p~~~~~~~~~~iRig~~-~~t~~g~~~~d~~~l 408 (471)
+.+...+.+ .+ ..++.+.|.+.|+ .+.+....+ ..+.+|+++. ..+ +++|++++
T Consensus 421 v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~----t~edi~~~ 491 (504)
T 2okj_A 421 VCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGD-----KANFFRMVISNPAA----TQSDIDFL 491 (504)
T ss_dssp EEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEECCCCTTC----CHHHHHHH
T ss_pred EEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECC-----ceEEEEEEeCCCCC----CHHHHHHH
Confidence 333322211 00 2456677777785 443221111 1258999984 333 48999999
Q ss_pred HHHHHHHHH
Q 012104 409 GEFLHRAVT 417 (471)
Q Consensus 409 ~~~i~~~l~ 417 (471)
.+.|.++++
T Consensus 492 ~~~l~~~~~ 500 (504)
T 2okj_A 492 IEEIERLGQ 500 (504)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999987654
No 146
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.91 E-value=4.1e-22 Score=207.54 Aligned_cols=333 Identities=13% Similarity=0.066 Sum_probs=213.6
Q ss_pred CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh----
Q 012104 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV---- 117 (471)
Q Consensus 42 ~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al---- 117 (471)
..++++++++.....|... ..|+.......+|+.+++++++++|++... ..+.++|||+||..++.++
T Consensus 111 ~~~~~v~~~~~~~~~n~~~------~~~~~~~~~~~le~~~~~~la~~~g~~~~~--~~~~t~ggt~a~~~al~~ar~~~ 182 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQSM------DSWDQASSATYVEQKVVNWLCDKYDLSEKA--DGIFTSGGTQSNQMGLMLARDWI 182 (497)
T ss_dssp CBHHHHHHHHHHHHHCCCT------TCGGGCHHHHHHHHHHHHHHHHHTTCCTTC--EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhcccc------cchhhChHHHHHHHHHHHHHHHHhCCCCCC--CeEEcCCchHHHHHHHHHHHHHH
Confidence 3467887777655444311 112333466788988899999999986422 3466788899999888873
Q ss_pred c---------CC------CC-EEEEeCCCCCCcccccccccCCccceecccee-EEEeeeecCCCCCCCHHHHHHHhhhC
Q 012104 118 L---------EP------HD-RIMGLDLPSGGHLTHGYYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDF 180 (471)
Q Consensus 118 l---------~p------GD-~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~-~~~~~~v~~~~~~iD~~~le~~~~~~ 180 (471)
+ ++ || +|++..+.|.+.. +.+...|.+. +++.++++ +++.+|+++|++.+.+.
T Consensus 183 ~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~---------~~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~ 252 (497)
T 2qma_A 183 ADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQ---------KSASWMGLGEKAVMTVDAN-ADGTMDITKLDEVIAQA 252 (497)
T ss_dssp HHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHH---------HHHHHTTSCGGGEEEECBC-TTSSBCGGGHHHHHHHH
T ss_pred HHhhcccchhhcccccccCCeEEEECCCchHHHH---------HHHHHcCCCcccEEEEecC-CCCcCCHHHHHHHHHHH
Confidence 3 13 46 7888876665432 1122334322 34556666 56899999999998753
Q ss_pred ---C--CcEEEE--cCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCC---CCCCCccEEEeCCCCcCCCCC
Q 012104 181 ---R--PKLIIC--GGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA---NPFEYCHIVTTTTHKSLRGPR 250 (471)
Q Consensus 181 ---~--pklIi~--~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~---~p~~~aDiv~~s~~K~l~Gpr 250 (471)
. |.+|++ +.|++|...|+++|+++|+++|+++++|++|+.+..... .. ..+..+|++++|+||++.+|.
T Consensus 253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~ 331 (497)
T 2qma_A 253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTI 331 (497)
T ss_dssp HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCS
T ss_pred HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCc
Confidence 1 335553 377899999999999999999999999999985433221 11 112367999999999988875
Q ss_pred -eEEEEeeCCCCCCCCCCCCCcccchHhhhhh-c--CCCCCCCCCcHH----------HHHHHHHHHHHhccHHHHHHHH
Q 012104 251 -AGMIFYRKGPKPPKKGQPEGAVYDFEDKINF-A--VFPSLQGGPHNH----------QIGALAVALKQASTPAFKAYAK 316 (471)
Q Consensus 251 -gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~-~--~~~~~~g~p~~~----------~iaa~a~al~~~~~~~~~~~~~ 316 (471)
.|+++++++ .+.+.+.. . .+...+..+... ...++..+++.+...++++..+
T Consensus 332 ~~G~l~~~~~--------------~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~ 397 (497)
T 2qma_A 332 SCGALLVNDK--------------SNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYD 397 (497)
T ss_dssp SCEEEEESCG--------------GGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHH
T ss_pred ceEEEEEeCH--------------HHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHH
Confidence 588888764 11111111 0 000000001110 1123344666665567888899
Q ss_pred HHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCH----HHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEe
Q 012104 317 QVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTG----NKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIG 391 (471)
Q Consensus 317 ~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~----~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig 391 (471)
+..+++++|.+.|++. |++++..+ ...++++.+.+.+.+. .++.+.|.+.|+.+.+...+. ..+.+|++
T Consensus 398 ~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~-----g~~~lRis 471 (497)
T 2qma_A 398 HLLAQTLEVADMIRTNDQFELLAEP-SLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVD-----GKTALKFT 471 (497)
T ss_dssp HHHHHHHHHHHHHHTCTTEEECSCC-SSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEET-----TEEEEEEE
T ss_pred HHHHHHHHHHHHHhhCCCeEEEcCC-CceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEEC-----CEEEEEEE
Confidence 9999999999999986 89886433 3446677765433222 245567778898875432221 23689999
Q ss_pred c-CCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 392 T-PAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 392 ~-~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+ +..+ +++|++++.+.|.++++
T Consensus 472 ~~~~~~----t~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 472 ILNPCL----TTSDFESLLSKINMLAV 494 (497)
T ss_dssp CCCTTC----CHHHHHHHHHHHHHHHH
T ss_pred ecCCCC----CHHHHHHHHHHHHHHHH
Confidence 7 4444 48999999999988764
No 147
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.84 E-value=6.7e-26 Score=228.80 Aligned_cols=337 Identities=14% Similarity=0.119 Sum_probs=216.7
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC--CCCCCCceeeecCChH
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYSGS 107 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg--~~~~~~~~~v~~~sGt 107 (471)
..|+|..+++. .+|.+++++...+.+. ..+|+.. ...+++...+++.+.+| ++.+ ..+.+++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~l~~~la~~l~~~~g~~~~~~---~v~~~~g~~ 99 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-VYGYTYA--------SDELLQAVLDWEKSEHQYSFDKE---DIVFVEGVV 99 (392)
Confidence 55677666542 3678888887766432 1233221 23444444456666667 3332 123355567
Q ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC--CCCCCHHHHHHHhhhCCCcEE
Q 012104 108 PANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS--TGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 108 ~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~--~~~iD~~~le~~~~~~~pklI 185 (471)
+|+.+++.++++|||+|++.+|.|.++.. .+...| .+++.++++++ ++.+|++++++.+.+.++++|
T Consensus 100 ~a~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g--~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v 168 (392)
T 3b1d_A 100 PAISIAIQAFTKEGEAVLINSPVYPPFAR---------SVRLNN--RKLVSNSLKEENGLFQIDFEQLENDIVENDVKLY 168 (392)
Confidence 89999999999999999999999877642 122233 34445554322 356899999998874578877
Q ss_pred EEc--CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC-C------CccEEEeCCCCcC--CCCCe
Q 012104 186 ICG--GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF-E------YCHIVTTTTHKSL--RGPRA 251 (471)
Q Consensus 186 i~~--~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~-~------~aDiv~~s~~K~l--~Gprg 251 (471)
++. +||+|..++ +++|+++|+++|++||+|++|. ++...|..+.++ . ...+++.|+||++ +|+|.
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 247 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQ-DLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKN 247 (392)
Confidence 643 678998876 7788899999999999999997 555544222222 1 2248899999996 78899
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
|+++++++ ++.+.+.....+...++++....++...+++.. ...+++..++..++++.+.+.|++
T Consensus 248 G~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~ 312 (392)
T 3b1d_A 248 SYAIIENP--------------TLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG-KPWLVALKAVLEENIQFAVEYFAQ 312 (392)
Confidence 99998753 344444433222212233333333333455432 234567777788888899999887
Q ss_pred -C-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHH-hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 332 -K-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLC-DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 332 -~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L-~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
. |+.+. .+..++++|+++...+.+..++.+.| +++||.+.++..++. ..++++||++.. .++++++.
T Consensus 313 ~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~---~~~~~iRi~~~~------~~e~i~~~ 382 (392)
T 3b1d_A 313 EAPRLKVM-KPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS---EGELHARLNIAA------PKSLVEEI 382 (392)
Confidence 4 77764 34556666788764345666776767 589999988765531 234789999732 25778887
Q ss_pred HHHHHHHHH
Q 012104 409 GEFLHRAVT 417 (471)
Q Consensus 409 ~~~i~~~l~ 417 (471)
.+.|.++++
T Consensus 383 l~~l~~~l~ 391 (392)
T 3b1d_A 383 CKRIVCCLP 391 (392)
Confidence 777776553
No 148
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=210.08 Aligned_cols=303 Identities=11% Similarity=-0.005 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCceeeecCChHHHHHHHHHHhcCCCC----EEEEeCCCCCCcccccccccCCccceecc
Q 012104 77 EIENLCRSRALQTFH-LDPTQWGVNVQPYSGSPANFAAYTAVLEPHD----RIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 77 ~lE~~~~~~~~~lfg-~~~~~~~~~v~~~sGt~A~~~~~~all~pGD----~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
.+++...+++.+.+| .+.+.- -.+.++++++|+..++.+++++|| +|+++.|.|.++.. .+...|
T Consensus 133 ~lr~~ia~~~~~~~gG~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~---------~~~~~g 202 (498)
T 3ihj_A 133 CIREDVAAYITRRDGGVPADPD-NIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSA---------VISELD 202 (498)
T ss_dssp HHHHHHHHHHHHHTTTCCCCGG-GEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHH---------HHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCCCcc-cEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHH---------HHHHcC
Confidence 444444466666664 432111 234455667899999999999986 99999999986542 122334
Q ss_pred ceeEEEeeeecCC-CCCCCHHHHHHHhhhC----CCcEEE-Ec-CCCCCccccH---HHHHHHHHHhCCEEEEeccccch
Q 012104 152 IYFESLPYKVNSS-TGYIDYDKLEEKALDF----RPKLII-CG-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 152 ~~~~~~~~~v~~~-~~~iD~~~le~~~~~~----~pklIi-~~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~g 221 (471)
.+++.++++++ ++.+|+++|++.+++. ++|+|+ ++ +||+|.+++. ++|.++|+++|++|++|++|. .
T Consensus 203 --~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~-~ 279 (498)
T 3ihj_A 203 --AIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQ-D 279 (498)
T ss_dssp --CEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT-T
T ss_pred --CEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCcc-c
Confidence 45666666643 5789999999998764 578776 44 7889998775 567788999999999999997 5
Q ss_pred hhcccc-CCCCCCC------------c-cEEEeCCCCcC---CCCCeEEEEe--eCCCCCCCCCCCCCcccchHhhhhhc
Q 012104 222 LVAAQE-AANPFEY------------C-HIVTTTTHKSL---RGPRAGMIFY--RKGPKPPKKGQPEGAVYDFEDKINFA 282 (471)
Q Consensus 222 lv~~g~-~~~p~~~------------a-Div~~s~~K~l---~GprgG~i~~--~~~~~~~~~~~~~i~~~~l~~~i~~~ 282 (471)
+++.+. .+.++.. . -+++.|+||++ +|.|+||++. .++ ++.+.+...
T Consensus 280 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~--------------~l~~~l~~~ 345 (498)
T 3ihj_A 280 NVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHP--------------EIKGQLVKL 345 (498)
T ss_dssp CBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCH--------------HHHHHHHHH
T ss_pred cccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCH--------------HHHHHHHHH
Confidence 555432 2222211 1 16788999997 6899999984 221 455544432
Q ss_pred CCCCCCCCCcHHHHHHHHHHHH----------HhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEcc
Q 012104 283 VFPSLQGGPHNHQIGALAVALK----------QASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLR 351 (471)
Q Consensus 283 ~~~~~~g~p~~~~iaa~a~al~----------~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~ 351 (471)
.... ..++....++++.++. ... .+.++..+++.++++.+.+.|++. |+++. .+..+.++|+++.
T Consensus 346 ~~~~--~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~-~p~gg~~~~~~l~ 421 (498)
T 3ihj_A 346 LSVR--LCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAKKAKLTEDLFNQVPGIHCN-PLQGAMYAFPRIF 421 (498)
T ss_dssp HHHS--CCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEECC-CCCBSSEECCEEC
T ss_pred Hhcc--CCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcEec-CCCeEEEEEEecc
Confidence 2111 2233333344444432 111 123455677788999999999987 88874 3455667776653
Q ss_pred C----------CCCCHHH--HHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 352 P----------LGLTGNK--VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 352 ~----------~~~~~~~--~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
. .+++.++ +.++|++.||.+.+++.|+.. ..++++|+++. ..+++++++.+.|.++++.
T Consensus 422 ~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~--~~~~~~Ris~~------~~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 422 IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR--EGTYHFRMTIL------PPVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC--TTCCBEEEECC------SCHHHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC--CCCCEEEEEeC------CCHHHHHHHHHHHHHHHHH
Confidence 2 2455565 478889999999998776532 23578999982 2478999888888877654
No 149
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.90 E-value=9.5e-24 Score=216.86 Aligned_cols=282 Identities=11% Similarity=0.083 Sum_probs=184.1
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v 161 (471)
+++++++ +|++. ..+.+++|++|+.+++.++++|||+|++.++.|.++.. .+...|. +++.++.
T Consensus 62 ~~~~la~-~g~~~----~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~---------~~~~~G~--~~~~v~~ 125 (446)
T 2x3l_A 62 SMKQVEK-HSDYD----GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLH---------ALDISQQ--EGHFIET 125 (446)
T ss_dssp HHHHHCS-CTTEE----EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHH---------HHHHHTC--CEEECEE
T ss_pred HHHHHHh-cCCCc----eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHH---------HHHHcCC--eEEEEeC
Confidence 3467888 99873 23444455689999999999999999999988765531 1223444 3444444
Q ss_pred --cCCC---CCCCHHHHHHHhhhCCCcEEE-EcCCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCC-CC-
Q 012104 162 --NSST---GYIDYDKLEEKALDFRPKLII-CGGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANP-FE- 233 (471)
Q Consensus 162 --~~~~---~~iD~~~le~~~~~~~pklIi-~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p-~~- 233 (471)
+++. +.+|++++ + ..++++|+ +++|++|...|+++|+++|+++|+++++|++|+..+.+.+. +.. ..
T Consensus 126 ~~~~~~~~~~~~d~~~l---~-~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~~ 200 (446)
T 2x3l_A 126 HQSPLTNHYNKVNLSRL---N-NDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLNY 200 (446)
T ss_dssp EECTTTSSEEEEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGGG
T ss_pred eeccccCcCCCCCHHHH---c-CCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHHc
Confidence 4221 46788877 2 24678776 44677999999999999999999999999999853434333 222 22
Q ss_pred CccEEEeCCCCcCCCC-CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 234 YCHIVTTTTHKSLRGP-RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 234 ~aDiv~~s~~K~l~Gp-rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
++|++++|+||++.|+ ++|+++++++.. + ...+.........++|+...++++..+++.+...+.+
T Consensus 201 g~Di~~~S~~K~l~~~~g~g~l~~~~~~i------------~-~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 201 QADYVVQSFHKTLPALTMGSVLYIHKNAP------------Y-RENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TCSEEEECHHHHSSSCTTCEEEEEETTCT------------T-HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCEEEECCccccccccccEEEEEcCCcC------------C-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 5899999999998776 459999987520 2 1222221111123567777777776666554321223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEec
Q 012104 313 AYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGT 392 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 392 (471)
++.++..++++.+++. |++++... +...+++++. ++++.++.+.|.++||.+.. ++ .+.+|+++
T Consensus 268 ~~~~~~~~l~~~l~~~----g~~~~~~~-~~~~l~i~~~--~~~~~~l~~~L~~~GI~v~~---~g------~~~iRi~~ 331 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK----GFEMLQVD-DPLKLLIKYE--GFTGHDIQNWFMNAHIYLEL---AD------DYQALAIL 331 (446)
T ss_dssp HHHHHHHHHHHHHHHH----TCEEEECS-STTEEEEECT--TSCHHHHHHHHHHTTEEESE---EC------SSCEEEEC
T ss_pred HHHHHHHHHHHHHHHc----CCEECcCC-CCeEEEEEeC--CcCHHHHHHHHHHCCCEEEe---cC------CCEEEEEe
Confidence 3555556666666555 88886533 3335777775 67888898888888999962 11 25799998
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 393 PAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 393 ~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+..+ +++++ ++.+.|.++++.
T Consensus 332 ~~~~----t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 332 PLWH----HDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CCCC----TTCCC-CHHHHHHHHHTC
T ss_pred ecCC----CHHHH-HHHHHHHHHHHh
Confidence 6543 35788 888888877653
No 150
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.90 E-value=3.6e-23 Score=205.80 Aligned_cols=329 Identities=12% Similarity=0.016 Sum_probs=202.9
Q ss_pred eEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHH
Q 012104 35 ELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAY 114 (471)
Q Consensus 35 ~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~ 114 (471)
-|..+.+...+++++++...+ . +..+...|+......+++ +++++++|.+. .+.++||++|+.+++
T Consensus 14 ~l~~~~~p~~~~~~~~~~~~~----~-~~~~~~~y~~~~~~~~l~----~~la~~~~~~~-----~i~~~~G~~a~~~al 79 (357)
T 3lws_A 14 GQISGHGKRNVGVLKTAFAAV----A-DEMASDQYGTGAIIEPFE----QKFADVLGMDD-----AVFFPSGTMAQQVAL 79 (357)
T ss_dssp EESSBSSCCBHHHHHHHHTTS----C-TTCBCEETTEETTHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHHHHh----h-cccCcccccCChHHHHHH----HHHHHHhCCCc-----EEEecCcHHHHHHHH
Confidence 455667666777776654432 1 112223454445556665 56788899864 355689999999999
Q ss_pred HHhcCCCC--EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEE-Ec-CC
Q 012104 115 TAVLEPHD--RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII-CG-GS 190 (471)
Q Consensus 115 ~all~pGD--~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi-~~-~s 190 (471)
.++++||| .|++.++.|..+...+ ......| .+++.++ .+++.+|+++++++. ++++|+ ++ +|
T Consensus 80 ~~~~~~gd~~~vi~~~~~~~~~~~~~------~~~~~~g--~~~~~v~--~~~~~~d~~~l~~~~---~~~~v~~~~p~n 146 (357)
T 3lws_A 80 RIWSDETDNRTVAYHPLCHLEIHEQD------GLKELHP--IETILVG--AADRLMTLDEIKALP---DIACLLLELPQR 146 (357)
T ss_dssp HHHHHHHTCCEEEECTTCHHHHSSTT------HHHHHSS--CEEEECS--CTTSCCCHHHHHTCC---SCSEEEEESSBG
T ss_pred HHHhhcCCCcEEEecccceeeeeccc------hhhhccC--cEEEEec--CCCCCcCHHHHhcCc---CcceEEEEcccc
Confidence 99999998 6766655443222100 0111223 3444444 345789999999873 378776 44 45
Q ss_pred CC-Ccccc---HHHHHHHHHHhCCEEEEeccccchhh-ccccCCCCC-CCccEEEeCCCCcCCCCCeEEEEeeCCCCCCC
Q 012104 191 AY-PRDWD---YARFRAVADKCGALLLCDMAHISGLV-AAQEAANPF-EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPK 264 (471)
Q Consensus 191 ~~-g~~~d---~~~i~~ia~~~g~~livD~a~~~glv-~~g~~~~p~-~~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~ 264 (471)
|+ |..++ +++|+++|+++|++|++|++|..+.. ..+.....+ ..+|++++|+||++.||.||+++.++
T Consensus 147 p~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~------ 220 (357)
T 3lws_A 147 EIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPA------ 220 (357)
T ss_dssp GGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECH------
T ss_pred cCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCH------
Confidence 66 88775 77888999999999999999863221 112111111 25788999999999899999988876
Q ss_pred CCCCCCcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCC
Q 012104 265 KGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGT 341 (471)
Q Consensus 265 ~~~~~i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~ 341 (471)
++.+.+.... +.+....+.....+++ .+++. +.+..++..++++++.+.|++. |+++...+.
T Consensus 221 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 285 (357)
T 3lws_A 221 ---------AFCQTARIWKRRYGGDLISLYPYIVSAD-YYYEL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVP 285 (357)
T ss_dssp ---------HHHHHHHHHHHHTTCCCSCCHHHHHHHH-HHHHH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSC
T ss_pred ---------HHHHHHHHHHHHhcCCcccchHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCC
Confidence 4555443211 1111111122222222 34443 2233445677888999999987 888743345
Q ss_pred CCeeEEEEccCCC-CCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 342 ENHLVLWDLRPLG-LTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 342 ~~~~~~v~~~~~~-~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
.++++|+++...+ .+..++.+.|.++||.+.++..+. + ..+.+|+++.... ....++++++..+.|.+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~---~-~~~~~r~~i~~~~-~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 286 VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDK---D-GYCSTEISVGDAY-GELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEEC---S-SEEEEEEEBCTTG-GGSCHHHHHHHHHHHHHHC
T ss_pred cceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccC---C-CceEEEEEecchh-hhcCHHHHHHHHHHHHHhc
Confidence 5678898886421 125677888999999998875432 1 2358999864322 1234667777666665543
No 151
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.90 E-value=1.8e-22 Score=204.05 Aligned_cols=328 Identities=10% Similarity=0.011 Sum_probs=210.4
Q ss_pred cCCeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeee-cCChHHH
Q 012104 31 CRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQ-PYSGSPA 109 (471)
Q Consensus 31 ~~~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~-~~sGt~A 109 (471)
...+++.+++..+|+.|++++.... +.. .++. .+ +.++.+..+ .+++++++++|++..+ ..+. ++||++|
T Consensus 39 ~~~~~~~~~~~~~~~~v~~a~~~~~-~~~-~~~~-~~---~~~~~~~~~-~~~~~la~~~g~~~~~--~i~~~t~g~t~a 109 (398)
T 2fyf_A 39 PRDGRFGSGPSKVRLEQLQTLTTTA-AAL-FGTS-HR---QAPVKNLVG-RVRSGLAELFSLPDGY--EVILGNGGATAF 109 (398)
T ss_dssp CSSCBCCSSSCCCCHHHHHGGGTTT-TTT-TTSC-TT---SHHHHHHHH-HHHHHHHHHTTCCTTC--EEEEEETCHHHH
T ss_pred cCCccccCCCCCCCHHHHHHHhhcC-CCc-cCcC-cC---CHHHHHHHH-HHHHHHHHHhCCCCCc--eEEEeCCchhHH
Confidence 3567888998889999999986521 010 1110 11 123323333 4678899999997421 1243 6788899
Q ss_pred HHHHHHHhcCCC-CEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE-
Q 012104 110 NFAAYTAVLEPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC- 187 (471)
Q Consensus 110 ~~~~~~all~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~- 187 (471)
+.+++.++++|| |.| ....|+ + .+. ......+.+.+++.++++ ++..+|. + +. .++++|++
T Consensus 110 l~~~~~~l~~~gv~~v--~~~~~~-~---~~~----~~~~~~~~g~~~~~v~~~-~g~~~~~-~----i~-~~~~~v~~~ 172 (398)
T 2fyf_A 110 WDAAAFGLIDKRSLHL--TYGEFS-A---KFA----SAVSKNPFVGEPIIITSD-PGSAPEP-Q----TD-PSVDVIAWA 172 (398)
T ss_dssp HHHHHHHTCSSCEEEE--ECSHHH-H---HHH----HHHHHCTTSCCCEEEECC-TTCCCCC-C----CC-TTCSEEEEE
T ss_pred HHHHHHHhcCCCeEEE--eCCHHH-H---HHH----HHHHHhCCCCceEEEecC-CCCCCCc-c----cc-CCCCEEEEe
Confidence 999999999998 444 222221 1 000 001112111233344444 2233332 1 32 47888864
Q ss_pred c-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCCCccEEEeCCCCcCCCC-CeEEEEeeCCCCCCCC
Q 012104 188 G-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP-RAGMIFYRKGPKPPKK 265 (471)
Q Consensus 188 ~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~~aDiv~~s~~K~l~Gp-rgG~i~~~~~~~~~~~ 265 (471)
+ +|++|...|+++|.++ +|++|++|++|..|. .+.++..+|++++|+||++.++ +.|++++++
T Consensus 173 ~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~-----~~~~~~~~di~~~s~sK~~~~~gg~g~l~~~~------- 237 (398)
T 2fyf_A 173 HNETSTGVAVAVRRPEGS---DDALVVIDATSGAGG-----LPVDIAETDAYYFAPQKNFASDGGLWLAIMSP------- 237 (398)
T ss_dssp SEETTTTEECCCCCCTTC---C-CEEEEECTTTTTT-----SCCCGGGCSEEEECTTSTTCSCSSEEEEEECH-------
T ss_pred CcCCCcceecchHHhhhh---cCCeEEEEeccccCC-----cccCcccCcEEEEecCcccCCCCceEEEEECH-------
Confidence 3 6889999999988887 899999999997542 2223445799999999998666 458888876
Q ss_pred CCCCCcccchHhhhhhc--------------------CCCCCCCCCcHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Q 012104 266 GQPEGAVYDFEDKINFA--------------------VFPSLQGGPHNHQIGALAVALKQASTPA-FKAYAKQVKANAVA 324 (471)
Q Consensus 266 ~~~~i~~~~l~~~i~~~--------------------~~~~~~g~p~~~~iaa~a~al~~~~~~~-~~~~~~~~~~na~~ 324 (471)
++.+++... ......++++...++++..+++.+...+ +++..++..+++++
T Consensus 238 --------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 309 (398)
T 2fyf_A 238 --------AALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR 309 (398)
T ss_dssp --------HHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred --------HHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 333333110 0012235667777777777887655444 77888899999999
Q ss_pred HHHHHHcC-CceEee-CC--CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCC
Q 012104 325 LGNYLTGK-GYSLVT-GG--TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 325 l~~~L~~~-g~~i~~-~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~ 400 (471)
+.+.|++. |++++. ++ ..+++++++++. +++..++.+.|.+.||.+.++. .....+.+||++...+
T Consensus 310 l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gI~v~~g~-----~~~~~~~iRis~~~~~---- 379 (398)
T 2fyf_A 310 LYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD-DVDAGTVAKILRANGIVDTEPY-----RKLGRNQLRVAMFPAV---- 379 (398)
T ss_dssp HHHHHHHSTTEEESCCSGGGBCSSEEEEEECT-TSCHHHHHHHHHHTTCBCCSCC-----TTTCSSEEEEECCTTS----
T ss_pred HHHHHHHcCCceeccCChhhcCCcEEEEECCC-CCCHHHHHHHHHHCCcEEecCc-----ccCCCCEEEEEecCCC----
Confidence 99999988 888753 12 234477888743 6788889888888899997642 1122478999986543
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~ 417 (471)
+++|++++.+.|.++++
T Consensus 380 t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 380 EPDDVSALTECVDWVVE 396 (398)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 48999999999988764
No 152
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.90 E-value=1.3e-22 Score=205.40 Aligned_cols=335 Identities=13% Similarity=0.087 Sum_probs=200.5
Q ss_pred cCCeeEecCCCC--CcHHHHHHHhhhhhccC----CCCCCCCCCCCcchhHHHHHHHHHHHHHHh--cC-CCCCCCceee
Q 012104 31 CRGIELIASENF--TSFAVIEALGSALTNKY----SEGMPGNRYYGGNEFIDEIENLCRSRALQT--FH-LDPTQWGVNV 101 (471)
Q Consensus 31 ~~~i~li~s~n~--~s~~v~~a~~~~l~~~~----~~g~~~~r~~~g~~~~~~lE~~~~~~~~~l--fg-~~~~~~~~~v 101 (471)
++.|+|..+++. .+|.|++++...+.... ..+|+ .......++ +.++++ +| ++.+ ..+
T Consensus 33 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~------~~~g~~~lr----~~la~~l~~g~~~~~---~v~ 99 (400)
T 3asa_A 33 HTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYG------PDFGLPALR----QKLSEDFYRGFVDAK---EIF 99 (400)
T ss_dssp SCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCC------CTTCCHHHH----HHHHHTTSTTSSCGG---GEE
T ss_pred CceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCC------CCCCCHHHH----HHHHHHHHcCCCCHH---HEE
Confidence 356888777653 57899999877664321 11221 111122333 456666 57 4442 123
Q ss_pred ecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHHHhhhC
Q 012104 102 QPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDF 180 (471)
Q Consensus 102 ~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~~~~~~ 180 (471)
.++++++|+.+++ .+++|||+|++.+|.|.++.. .+...|.. .++.++++++ ....|++ + + .
T Consensus 100 ~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~~-~~~~~~~~~~~~~~~~l~---~-~--~ 162 (400)
T 3asa_A 100 ISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLD---------IARLTGAK-EIIALPCLQENAFFPEFP---E-D--T 162 (400)
T ss_dssp EESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHH---------HHHHTTCS-EEEEEECCGGGTTCCCCC---T-T--C
T ss_pred EccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHH---------HHHHcCCc-ceEecccchhcCcccChh---h-c--c
Confidence 3445567777754 566899999999999876532 12233432 0444554432 2233432 1 1 4
Q ss_pred CCcEEEE-c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCCCCC---CC-cc--EEEeCCCCcC--C
Q 012104 181 RPKLIIC-G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---EY-CH--IVTTTTHKSL--R 247 (471)
Q Consensus 181 ~pklIi~-~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~~-aD--iv~~s~~K~l--~ 247 (471)
++++|++ + +||+|..++. ++|.++|+++|++||+|++|. ++...+..+.++ +. .| ++++|+||++ +
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 241 (400)
T 3asa_A 163 HIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYS-TFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFA 241 (400)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTG-GGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTT
T ss_pred CccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhh-hhhcCCCCCCchhhCCCCCCceEEEecchhhcCCc
Confidence 6887775 4 7889999875 467788999999999999997 554444322222 21 34 8899999995 7
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 248 GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
|.|.|++++++++.... + . .+........ ....++++...+++...+++.. ++++..+++.++++.|.+
T Consensus 242 GlriG~~~~~~~~~~~~--~---~--~~~~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~ 310 (400)
T 3asa_A 242 GIRLGWTVIPQELTYAD--G---H--FVIQDWERFL-STTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRK 310 (400)
T ss_dssp TCCCEEEECCTTCBCTT--S---C--BHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHH
T ss_pred chheeEEeeChhhccch--h---h--hHHHHHHHHh-ccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHH
Confidence 88899999887521000 0 0 0122111110 0011233444444455566543 345677788889999999
Q ss_pred HHHcCCceEeeCCCCCeeEEEE-ccCCCCCHHHHHH-HHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHH
Q 012104 328 YLTGKGYSLVTGGTENHLVLWD-LRPLGLTGNKVEK-LCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDF 405 (471)
Q Consensus 328 ~L~~~g~~i~~~~~~~~~~~v~-~~~~~~~~~~~~~-~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~ 405 (471)
.|++.|+++.. +..++++|++ +. .+++..++.. +++++||.+.++..++. ...+++||++ .+ +++++
T Consensus 311 ~L~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gv~v~~g~~f~~---~~~~~iRis~--~~----~~e~i 379 (400)
T 3asa_A 311 ALLATGFEVFG-GEHAPYLWVKPTQ-ANISDRDLFDFFLREYHIAITPGIGFGR---SGSGFVRFSS--LG----KREDI 379 (400)
T ss_dssp HHHHTTCEEEE-CSSSSEEEEECCC-TTCCTTTHHHHHHHHHSEECEEGGGGCG---GGTTCEEEEC--CS----CHHHH
T ss_pred HHHHCCCeeeC-CCCceEEEEeccC-CCCCHHHHHHHHHHhCCEEEeChhHhCC---CCCCEEEEEe--eC----CHHHH
Confidence 99988998864 3445678888 64 3455555544 55677999998765431 1246899994 22 37899
Q ss_pred HHHHHHHHHHHHH
Q 012104 406 EQIGEFLHRAVTL 418 (471)
Q Consensus 406 ~~l~~~i~~~l~~ 418 (471)
++..+.|.++++.
T Consensus 380 ~~~l~~l~~~~~~ 392 (400)
T 3asa_A 380 LAACERLQMAPAL 392 (400)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9998888877653
No 153
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.90 E-value=1.3e-22 Score=208.75 Aligned_cols=324 Identities=14% Similarity=0.099 Sum_probs=202.0
Q ss_pred CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCC
Q 012104 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPH 121 (471)
Q Consensus 42 ~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pG 121 (471)
.+++++++++... .+ .|.......+++ +.+++++|.+. .+.++||++|+.+++.++++||
T Consensus 55 ~~~~~~~~a~~~~-~~----------~y~~~~~~~~l~----~~la~~~~~~~-----~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 55 AMSDKQWAGMMMG-DE----------AYAGSENFYHLE----RTVQELFGFKH-----IVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp CCCHHHHHHHTTC-CC----------CSSSCHHHHHHH----HHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHhhcc-hh----------hcccChhHHHHH----HHHHHHhCCCc-----EEEeCCcHHHHHHHHHHhCCCC
Confidence 3468888887511 11 122334444444 56788888763 4667899999999999999999
Q ss_pred CEEEEeCCCC-CCcccccccccCCccceeccceeEEEeeeecC----C-----CCCCCHHHHHHHhhhCC---CcEEEE-
Q 012104 122 DRIMGLDLPS-GGHLTHGYYTSGGKKISATSIYFESLPYKVNS----S-----TGYIDYDKLEEKALDFR---PKLIIC- 187 (471)
Q Consensus 122 D~Vl~~~~~~-~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~----~-----~~~iD~~~le~~~~~~~---pklIi~- 187 (471)
| ++.++.| +.+.. .+...| .+++.+++++ + ++.+|+++|++++.+.. +++|++
T Consensus 115 d--i~~~~~~~~~~~~---------~~~~~G--~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~ 181 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTRY---------HQEKNG--AVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLA 181 (456)
T ss_dssp C--EEEESSCCHHHHH---------HHHHTT--CEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred C--EeccccccchhHH---------HHHHcC--CEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEe
Confidence 9 6677776 32111 122344 3455555552 2 26899999999987532 266664
Q ss_pred c-CC-CCCcccc---HHHHHHHHHHhCCEEEEeccccch---------hhccccCCC----CC-CCccEEEeCCCCcCCC
Q 012104 188 G-GS-AYPRDWD---YARFRAVADKCGALLLCDMAHISG---------LVAAQEAAN----PF-EYCHIVTTTTHKSLRG 248 (471)
Q Consensus 188 ~-~s-~~g~~~d---~~~i~~ia~~~g~~livD~a~~~g---------lv~~g~~~~----p~-~~aDiv~~s~~K~l~G 248 (471)
+ +| ++|...+ +++|+++|+++|++||+|++|..| +.+.|.... .+ ..+|++++|+||+...
T Consensus 182 ~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 182 VTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred ccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 3 44 7898887 889999999999999999999865 334332110 01 2468888889998655
Q ss_pred CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC--CC--CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Q 012104 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF--PS--LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVA 324 (471)
Q Consensus 249 prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~--~~--~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~ 324 (471)
|+||+++++++ ++.+.+..... .+ ..++.+...+++++.++.+... +++.++..+++++
T Consensus 262 ~~gG~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~---~~~~~~~~~~~~~ 324 (456)
T 2ez2_A 262 NIGGFLCMNDD--------------EMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ---YEYIEHRVKQVRY 324 (456)
T ss_dssp SSCEEEEESCH--------------HHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHH
T ss_pred CceeEEEECCH--------------HHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH---HHHHHHHHHHHHH
Confidence 67999998542 44444332110 01 1122232333443434433221 4566777788889
Q ss_pred HHHHHHcCCceEeeCCCCCeeEEEEccC--CCCCHHHH-----HHHH-hhcCeEecc-CCc--CC-----CCCCCCCCee
Q 012104 325 LGNYLTGKGYSLVTGGTENHLVLWDLRP--LGLTGNKV-----EKLC-DLCNITVNK-NAV--FG-----DSSALAPGGV 388 (471)
Q Consensus 325 l~~~L~~~g~~i~~~~~~~~~~~v~~~~--~~~~~~~~-----~~~L-~~~gI~v~~-~~~--p~-----~~~~~~~~~i 388 (471)
+.+.|.+.|++++. +...+++|+++.. .+.+..++ .+.| +++||.+.+ +.. +. .......+.+
T Consensus 325 l~~~L~~~g~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~i 403 (456)
T 2ez2_A 325 LGDKLKAAGVPIVE-PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETV 403 (456)
T ss_dssp HHHHHHHTTCCBCS-SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEE
T ss_pred HHHHHhcCCCcccc-CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeE
Confidence 99999888887653 4456778887631 23344443 5555 788998643 321 10 0001123689
Q ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 389 RIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 389 Rig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
||+++.. ..++++++++.+.|.++++..
T Consensus 404 Ris~~~~---~~t~e~i~~~~~~l~~~l~~~ 431 (456)
T 2ez2_A 404 RLTIPRR---VYTYAHMDVVADGIIKLYQHK 431 (456)
T ss_dssp EEECCTT---TCCHHHHHHHHHHHHHHHHTG
T ss_pred EEEeCCC---CCCHHHHHHHHHHHHHHHhhh
Confidence 9998542 145899999999999987653
No 154
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.90 E-value=6.9e-22 Score=206.77 Aligned_cols=308 Identities=13% Similarity=0.004 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-------C-CCC------EEEEeCCCCCCccccc
Q 012104 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL-------E-PHD------RIMGLDLPSGGHLTHG 138 (471)
Q Consensus 73 ~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all-------~-pGD------~Vl~~~~~~~g~~s~~ 138 (471)
....++|..+++++++++|++.+ ..+.+++||+||..++.++. + +|| +|++.+..|.+...
T Consensus 144 ~~~~~le~~~~~~la~l~g~~~~---~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~-- 218 (515)
T 2jis_A 144 PVFVLMEEEVLRKLRALVGWSSG---DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQK-- 218 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHH--
T ss_pred hHHHHHHHHHHHHHHHHhCCCCC---CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHH--
Confidence 45567888889999999999743 24557788999998888763 2 686 88888876654421
Q ss_pred ccccCCccceecccee-EEEeeeecCCCCCCCHHHHHHHhhhC-----CCcEEEEc--CCCCCccccHHHHHHHHHHhCC
Q 012104 139 YYTSGGKKISATSIYF-ESLPYKVNSSTGYIDYDKLEEKALDF-----RPKLIICG--GSAYPRDWDYARFRAVADKCGA 210 (471)
Q Consensus 139 ~~~~~g~~~~~~g~~~-~~~~~~v~~~~~~iD~~~le~~~~~~-----~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~ 210 (471)
.+...|.+. +++.++++ +++.+|+++|++++.+. +|++|++. .|++|...|+++|+++|+++|+
T Consensus 219 -------~~~~~g~g~~~v~~v~~~-~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 219 -------GAAFLGLGTDSVRVVKAD-ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp -------HHHHTTSCGGGEEEECBC-TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred -------HHHHcCCCCCcEEEEecC-CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 122334422 45555666 46899999999998752 47877754 5789999999999999999999
Q ss_pred EEEEeccccchhhccccCCCCC---CCccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCCCcccchHhhhh----hc
Q 012104 211 LLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKIN----FA 282 (471)
Q Consensus 211 ~livD~a~~~glv~~g~~~~p~---~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~i~~~~l~~~i~----~~ 282 (471)
++++|++|+.+..........+ .++|++++|+||++.+|.+ |+++++++. .+.++.. ..
T Consensus 291 ~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~-------------~~~~~~~~~~~~y 357 (515)
T 2jis_A 291 WLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTS-------------NLLKRCHGSQASY 357 (515)
T ss_dssp EEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCS-------------CHHHHHHCC----
T ss_pred eEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChH-------------HHHHHHhcCCchh
Confidence 9999999985544322111112 3689999999999988864 999888740 1211100 00
Q ss_pred CC--------------CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEE
Q 012104 283 VF--------------PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVL 347 (471)
Q Consensus 283 ~~--------------~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~ 347 (471)
.+ +..+.+-.... .++..+++.+...++++..++..++++++.+.|++. |++++..+..+ .+.
T Consensus 358 l~~~~~~~~~~~~~~~~~~~~~rr~~a-l~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~-~v~ 435 (515)
T 2jis_A 358 LFQQDKFYDVALDTGDKVVQCGRRVDC-LKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFV-NVC 435 (515)
T ss_dssp -----CCSCGGGCCGGGCSCSSCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSS-EEE
T ss_pred ccCCcccccccCCCCCCCCCCCCcccH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCee-EEE
Confidence 00 00011110111 122223333334578888999999999999999987 89986543333 333
Q ss_pred EEccCCCC-------C-H-------HHHHHHHhhcCeEecc-CCcCCCCCCCCCCeeEEec-CCCCCcCCCHHHHHHHHH
Q 012104 348 WDLRPLGL-------T-G-------NKVEKLCDLCNITVNK-NAVFGDSSALAPGGVRIGT-PAMTSRGLLEKDFEQIGE 410 (471)
Q Consensus 348 v~~~~~~~-------~-~-------~~~~~~L~~~gI~v~~-~~~p~~~~~~~~~~iRig~-~~~t~~g~~~~d~~~l~~ 410 (471)
+.+.+.++ + . ..+.+.|.+.|+.+.. ...++ ..+.+|+++ +..+ +++|++++.+
T Consensus 436 f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~-----~~~~lRis~~~~~~----t~edid~~~~ 506 (515)
T 2jis_A 436 FWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGT-----RGNFFRVVVANSAL----TCADMDFLLN 506 (515)
T ss_dssp EEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETT-----EEEEEEEECCCTTC----CHHHHHHHHH
T ss_pred EEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECC-----ceEEEEEEeCCCCC----CHHHHHHHHH
Confidence 33322111 1 0 1245566677865421 11111 135899998 4444 4899999999
Q ss_pred HHHHHHH
Q 012104 411 FLHRAVT 417 (471)
Q Consensus 411 ~i~~~l~ 417 (471)
.|.++++
T Consensus 507 ~l~~~~~ 513 (515)
T 2jis_A 507 ELERLGQ 513 (515)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9987654
No 155
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.90 E-value=4.4e-22 Score=197.48 Aligned_cols=314 Identities=13% Similarity=0.078 Sum_probs=211.8
Q ss_pred cCCeeEecCCCCC--cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHH
Q 012104 31 CRGIELIASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSP 108 (471)
Q Consensus 31 ~~~i~li~s~n~~--s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~ 108 (471)
+..|+|..++|.. +|.|++++...+.. + .+|+... . ..+ ++++++++|++.+. .+.+++|++
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~~~~------~-~~l----r~~la~~~~~~~~~---i~~t~g~~~ 78 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLNC-I-RHYPEPD------A-GTL----RQMLAKRNSVDNNA---ILVTNGPTA 78 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGGG-G-GSCCCTT------C-HHH----HHHHHHHTTCCGGG---EEEESHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHhH-H-hcCCCCc------H-HHH----HHHHHHHhCcCHHH---EEEcCCHHH
Confidence 5678888887654 78999999877732 2 2444321 1 233 46788889987541 344555668
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee-cCCCCCCCHHHHHHHhhhCCCcEEEE
Q 012104 109 ANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV-NSSTGYIDYDKLEEKALDFRPKLIIC 187 (471)
Q Consensus 109 A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v-~~~~~~iD~~~le~~~~~~~pklIi~ 187 (471)
|+.+++.++. ||+|++.+|.|.++.. .+...| .+++.+++ + +.+.+++ .++++|++
T Consensus 79 al~~~~~~l~--gd~Vi~~~p~~~~~~~---------~~~~~g--~~~~~v~~~~-~~~~~~~---------~~~~~v~i 135 (350)
T 3fkd_A 79 AFYQIAQAFR--GSRSLIAIPSFAEYED---------ACRMYE--HEVCFYPSNE-DIGEADF---------SNMDFCWL 135 (350)
T ss_dssp HHHHHHHHTT--TCEEEEEESCCHHHHH---------HHHHTT--CEEEEEETTS-CGGGSCC---------TTCSEEEE
T ss_pred HHHHHHHHHC--CCEEEEeCCCcHHHHH---------HHHHcC--CeEEEEecCC-ccccCcc---------CCCCEEEE
Confidence 9999999888 9999999998876531 122334 35556665 4 2234443 36887764
Q ss_pred -c-CCCCCccccHHHHHHHHHHhC-CEEEEeccccchhhccccCC-CCCC--CccEEEeCCCCcC--CCCCeEEEEeeCC
Q 012104 188 -G-GSAYPRDWDYARFRAVADKCG-ALLLCDMAHISGLVAAQEAA-NPFE--YCHIVTTTTHKSL--RGPRAGMIFYRKG 259 (471)
Q Consensus 188 -~-~s~~g~~~d~~~i~~ia~~~g-~~livD~a~~~glv~~g~~~-~p~~--~aDiv~~s~~K~l--~GprgG~i~~~~~ 259 (471)
+ +||+|..+|.+++.++++.++ .+|++|++|. ++...+... ..++ ..+++++|+||++ +|.|.|++++++
T Consensus 136 ~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~-~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~- 213 (350)
T 3fkd_A 136 CNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYV-SFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANK- 213 (350)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTT-TSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCH-
T ss_pred eCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchh-hhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCH-
Confidence 4 788999999999999999886 7999999996 554433221 1112 3348899999994 678899999865
Q ss_pred CCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEee
Q 012104 260 PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT 338 (471)
Q Consensus 260 ~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~ 338 (471)
++.+++.....+ .+++...+++...+++... .+.+..++..++++++.+.|++. |+.+.
T Consensus 214 --------------~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~~~- 273 (350)
T 3fkd_A 214 --------------DFMKRVAAFSTP---WAVNALAIEAAKFILIHPA--QFTLPIRKWQRNTVDFITALNRLDGVEVH- 273 (350)
T ss_dssp --------------HHHHHHHTTCCT---TCSCHHHHHHHHHHHHCTT--TTCCCHHHHHHHHHHHHHHHHHSTTEEEC-
T ss_pred --------------HHHHHHHHhCCC---CCCCHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHHHHHHhcCCCcEEC-
Confidence 566666654332 2344444445555565422 13233344448889999999887 88874
Q ss_pred CCCCCeeEEEEccCCCCCHHHHHHHHhh-cCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 339 GGTENHLVLWDLRPLGLTGNKVEKLCDL-CNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 339 ~~~~~~~~~v~~~~~~~~~~~~~~~L~~-~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+ ..++++|+.+... +..++.+.|.+ +||.+.++..++. ...+++||++. ++++++++.+.|+++++
T Consensus 274 ~-~~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~~---~~~~~iRis~~-------~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 274 P-SGTTFFLLRLKKG--TAAELKKYMLEEYNMLIRDASNFRG---LDESYVRITTQ-------RPAQNQLFIKALETFLE 340 (350)
T ss_dssp C-CSSSEEEEEESSS--CHHHHHHHHHHTTCEECEECTTSTT---CCTTEEEEECC-------CHHHHHHHHHHHHHHHT
T ss_pred C-CCCcEEEEECCCC--CHHHHHHHHHHHCCEEEEeCccCCC---CCCCEEEEEcC-------CHHHHHHHHHHHHHHHH
Confidence 3 3345667777542 77888888877 9999998765532 23579999973 37899999999998876
Q ss_pred H
Q 012104 418 L 418 (471)
Q Consensus 418 ~ 418 (471)
.
T Consensus 341 ~ 341 (350)
T 3fkd_A 341 K 341 (350)
T ss_dssp C
T ss_pred H
Confidence 5
No 156
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.90 E-value=5.8e-23 Score=209.59 Aligned_cols=315 Identities=13% Similarity=0.110 Sum_probs=199.8
Q ss_pred cccChHHHHHHHHHHHhccCCeeEecCCCCCcHHHHHHHhhhhhc-cCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC
Q 012104 13 ETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTN-KYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH 91 (471)
Q Consensus 13 ~~~d~~~~~~~~~e~~~~~~~i~li~s~n~~s~~v~~a~~~~l~~-~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg 91 (471)
....+++.+.+.+|.+++...++.++.+| .+.|++++...... ....+..+.+| +....+.+ ++++++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~vl~A~~~~~~~~~~~~~~~g~~y--~~~~~~~l----~~~la~~~g 79 (431)
T 3ht4_A 8 GEKIAPIVKEVESQITEVHKRADEVIESN--QFRVLESFGKHKISDSHFIPTTGYGY--DDIGRDTL----EKVYADVFG 79 (431)
T ss_dssp TTTSHHHHHHHHHHTHHHHHHHHHHHHHH--HHHHHHHHHHTTCCGGGSCCCCTTCC--SCHHHHHH----HHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhhhhcCCCCCCCC--ChhhHHHH----HHHHHHHhC
Confidence 34456677777788888888888887777 56888888764221 11112222222 22333334 467889999
Q ss_pred CCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeC-CCCCCcccccccccCC-ccceeccceeEEEeeeecCCCCCCC
Q 012104 92 LDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD-LPSGGHLTHGYYTSGG-KKISATSIYFESLPYKVNSSTGYID 169 (471)
Q Consensus 92 ~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~-~~~~g~~s~~~~~~~g-~~~~~~g~~~~~~~~~v~~~~~~iD 169 (471)
++.+. +.++++||++|+.+++.++++|||+|++.+ +.|+++.......... ..+...| .+++.++.+ +++.+|
T Consensus 80 ~~~~~--~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G--~~~~~v~~~-~~~~~d 154 (431)
T 3ht4_A 80 AEAGL--VRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYN--IGYNAVPLT-EGGLVD 154 (431)
T ss_dssp CSEEC--CBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGT--CEEEECCBC-TTSSBC
T ss_pred CCccc--ccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcC--CEEEEeCCC-CCCCcC
Confidence 98632 234467999999999999999999999998 8887654210000000 0011223 455666666 358899
Q ss_pred HHHHHHHhhhCCCcEEEEcC---CC---CCccccHHHHHHHHHH--hCCEEEEeccccchhhccccCCCCCC-CccEEEe
Q 012104 170 YDKLEEKALDFRPKLIICGG---SA---YPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQEAANPFE-YCHIVTT 240 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~---s~---~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~ 240 (471)
+++|++++.+ ++++|++.. |+ ++...|+++|+++|++ +|+++++|++|..+. .. ..|+. ++|++++
T Consensus 155 ~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~-~~---~~~~~~g~Di~~~ 229 (431)
T 3ht4_A 155 FEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFI-EE---QEPCHVGADLMAG 229 (431)
T ss_dssp HHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTS-SS---CCGGGTTCSEEEE
T ss_pred HHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhc-cC---CCccccCCeEEEc
Confidence 9999999974 789888653 24 4555678899999999 999999999997442 21 12333 6899999
Q ss_pred CCCCcCCC---CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcC-CCCC--CCCCcHHHHHHHHHHHHHhccHHHHHH
Q 012104 241 TTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-FPSL--QGGPHNHQIGALAVALKQASTPAFKAY 314 (471)
Q Consensus 241 s~~K~l~G---prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~-~~~~--~g~p~~~~iaa~a~al~~~~~~~~~~~ 314 (471)
|+||+|.| |.||++++++ ++.+++.... .++. ..++.......+..++. ....+
T Consensus 230 S~sK~lgg~~~~~GG~v~~~~---------------~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~-----~~~~~ 289 (431)
T 3ht4_A 230 SLIKNPGGGIVKTGGYIVGKE---------------QYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF-----LAPHV 289 (431)
T ss_dssp ETTSGGGTTTCSSCEEEEECH---------------HHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH-----HHHHH
T ss_pred CccccCCCCCCCceEEEEecH---------------HHHHHHHHHhccCCcccccCccHHHHHHHHhHhh-----hHHHH
Confidence 99999876 7889999986 5555554321 2221 12232211111222232 23567
Q ss_pred HHHHHHHHHHHHHHHHcCCceEeeCCCCCe-----eEEEEccCCCCCHHHHHHHHhhcC
Q 012104 315 AKQVKANAVALGNYLTGKGYSLVTGGTENH-----LVLWDLRPLGLTGNKVEKLCDLCN 368 (471)
Q Consensus 315 ~~~~~~na~~l~~~L~~~g~~i~~~~~~~~-----~~~v~~~~~~~~~~~~~~~L~~~g 368 (471)
.++..++++++++.|++.|+++... .++ ++.+.+.. .....++.+.|.+..
T Consensus 290 ~~~~~~~a~~l~~~L~~~g~~v~p~--~~~~~~~li~~i~l~~-~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 290 AGQALKGAIFTAAFLEKLGMNTSPA--WNAPRTDLIQSVQFDD-KDRMIAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEESC--TTSCCSSSCCEEECCC-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhCcCEecCC--CCCCCccEEEEEEeCC-HHHHHHHHHHHHhcC
Confidence 7888999999999999999988432 233 45566542 112234555666553
No 157
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=3.7e-22 Score=204.47 Aligned_cols=323 Identities=18% Similarity=0.160 Sum_probs=209.2
Q ss_pred CCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh-
Q 012104 39 SENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV- 117 (471)
Q Consensus 39 s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al- 117 (471)
+.+.+++++++++...+...+ |+.+ ....++ ++.+++++|++. .+.++||++|+.+++.++
T Consensus 37 ~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l----~~~la~~~g~~~-----~i~~~sGt~a~~~al~~l~ 98 (437)
T 3bb8_A 37 SGKVIGTKELQLMVEASLDGW--------LTTG-RFNDAF----EKKLGEYLGVPY-----VLTTTSGSSANLLALTALT 98 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHHCC--------CBSC-HHHHHH----HHHHHHHHTCSE-----EEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHcCC--------cCCC-hHHHHH----HHHHHHHHCCCc-----EEEeCCHHHHHHHHHHHhh
Confidence 456677889999887765321 2222 233444 467888999873 477889999999999998
Q ss_pred --------cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcC
Q 012104 118 --------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189 (471)
Q Consensus 118 --------l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~ 189 (471)
++|||+|++++++|.++.. .+...| .+++.++++++++.+|++++++.+.. ++++|++.+
T Consensus 99 ~~~~~~~~~~~gd~Vi~~~~~~~~~~~---------~~~~~g--~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 166 (437)
T 3bb8_A 99 SPKLGVRALKPGDEVITVAAGFPTTVN---------PTIQNG--LIPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAH 166 (437)
T ss_dssp CGGGGGGSCCTTCEEEECSSSCHHHHH---------HHHHTT--CEEEECCEETTTTEECGGGHHHHCCT-TEEEEEEEC
T ss_pred hcccccccCCCcCEEEECCCCcHHHHH---------HHHHcC--CEEEEEeccCccCCcCHHHHHHhcCC-CCeEEEEeC
Confidence 8999999999998876542 122234 45667777755788999999998864 688887653
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCC--CcCCCCCeEEEEeeCCCCCCCCC
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTH--KSLRGPRAGMIFYRKGPKPPKKG 266 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~--K~l~GprgG~i~~~~~~~~~~~~ 266 (471)
++|...|+++|.++|+++|+++++|++|+.|....+. .+. .+|+++.|++ |.++|++||+++++++
T Consensus 167 -~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~---~~~~~~d~~~~s~~~~k~l~~g~gg~~~~~~~------- 235 (437)
T 3bb8_A 167 -TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGK---MAGTFGDIGTVSFYPAKHITMGEGGAVFTQSA------- 235 (437)
T ss_dssp -GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE---ETTSSSSEEEEECSTTSSSCCSSCEEEEESCH-------
T ss_pred -CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCe---ecccccCEEEEECcCCcCCCCCCeEEEEeCCH-------
Confidence 4566789999999999999999999999877654321 122 3688777764 4488899999998863
Q ss_pred CCCCcccchHhhhhh---cC---------------------------C-----CCCCCCC--cHHHHHHHHHHHHHhccH
Q 012104 267 QPEGAVYDFEDKINF---AV---------------------------F-----PSLQGGP--HNHQIGALAVALKQASTP 309 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~---~~---------------------------~-----~~~~g~p--~~~~iaa~a~al~~~~~~ 309 (471)
.+.+.+.. .. + +...|.. .....++++ +..+ .
T Consensus 236 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--l~~l--~ 304 (437)
T 3bb8_A 236 -------ELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACG--LAQL--E 304 (437)
T ss_dssp -------HHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHH--HHHH--H
T ss_pred -------HHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHH--HHHH--H
Confidence 12221111 00 0 0001100 011222222 2111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCC----CC-eeEEEEccC-CCCCHHHHHHHHhhcCeEeccCCcCC-CCC
Q 012104 310 AFKAYAKQVKANAVALGNYLTGK-GYSLVTGGT----EN-HLVLWDLRP-LGLTGNKVEKLCDLCNITVNKNAVFG-DSS 381 (471)
Q Consensus 310 ~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~----~~-~~~~v~~~~-~~~~~~~~~~~L~~~gI~v~~~~~p~-~~~ 381 (471)
.+.++.++..++++++.+.|++. |+.++.... .+ +.+.+.+.. .+++.+++.+.|.++||.++..+.|. ...
T Consensus 305 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~v~~~~~~~~~~~ 384 (437)
T 3bb8_A 305 RIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQ 384 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHHHHHHHHTTBCCBCCTTSSGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHHHHHHHHCCCceeccCCcccccC
Confidence 33566667788899999999887 766543211 12 122232322 25678899999999999998765321 001
Q ss_pred CC------------------CCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 382 AL------------------APGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 382 ~~------------------~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
|. ..+.+||++.. .++++|++++++.|.++++
T Consensus 385 p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~----~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 385 PYFHDVKYRVVGELTNTDRIMNQTFWIGIYP----GLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp GGGSSCCCEECSCCHHHHHHHHHEEEECCST----TCCHHHHHHHHHHHHHHTT
T ss_pred chhhccCccccCCCcHHHHHhcCEEEecCCC----CCCHHHHHHHHHHHHHHHc
Confidence 10 01258998744 3568999999999988764
No 158
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.90 E-value=2.3e-22 Score=198.42 Aligned_cols=303 Identities=13% Similarity=0.054 Sum_probs=205.0
Q ss_pred CCeeEecCCCC--CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC---CCCCCCceeeecCCh
Q 012104 32 RGIELIASENF--TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH---LDPTQWGVNVQPYSG 106 (471)
Q Consensus 32 ~~i~li~s~n~--~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg---~~~~~~~~~v~~~sG 106 (471)
..+.|..+++. .++.+++++...+......+|+.. ...++ ++.++++++ ++.+ ..+.+++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~-------~~~~l----r~~la~~~~~~~~~~~---~v~~~~G~ 85 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDS-------PDEEL----IEKILSYLDTDFLSKN---NVSVGNGA 85 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCS-------SCHHH----HHHHHHHHTCSSCCGG---GEEEESSH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCC-------chHHH----HHHHHHHcCCCCCCHH---HEEEcCCh
Confidence 46888877763 579999999877632111233321 12233 356777888 6543 23445566
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEE
Q 012104 107 SPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLII 186 (471)
Q Consensus 107 t~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi 186 (471)
++|+.+++.++ ||+|++. |.|.++.. .+...| .+++.++++ +++.+|++++ .++++|+
T Consensus 86 ~~al~~~~~~~---gd~Vl~~-p~y~~~~~---------~~~~~g--~~~~~v~~~-~~~~~d~~~l------~~~~~v~ 143 (335)
T 1uu1_A 86 DEIIYVMMLMF---DRSVFFP-PTYSCYRI---------FAKAVG--AKFLEVPLT-KDLRIPEVNV------GEGDVVF 143 (335)
T ss_dssp HHHHHHHHHHS---SEEEECS-SSCHHHHH---------HHHHHT--CEEEECCCC-TTSCCCCCCC------CTTEEEE
T ss_pred HHHHHHHHHHh---CCcEEEC-CCcHHHHH---------HHHHcC--CeEEEeccC-CCCCCCHHHc------CCCCEEE
Confidence 78999999888 9999999 98876532 122334 345556555 3467887776 3688887
Q ss_pred -Ec-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC--CccEEEeCCCCcC--CCCCeEEEEeeCCC
Q 012104 187 -CG-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE--YCHIVTTTTHKSL--RGPRAGMIFYRKGP 260 (471)
Q Consensus 187 -~~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~--~aDiv~~s~~K~l--~GprgG~i~~~~~~ 260 (471)
++ +||+|..++.+++.++++..| ++++|++|. ++...+.. ..++ ..+++++|+||++ +|.|.|++++++
T Consensus 144 l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~-~~~~~~~~-~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~-- 218 (335)
T 1uu1_A 144 IPNPNNPTGHVFEREEIERILKTGA-FVALDEAYY-EFHGESYV-DFLKKYENLAVIRTFSKAFSLAAQRVGYVVASE-- 218 (335)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTH-HHHCCCCG-GGGGTCSSEEEEEESTTTTTCGGGCCEEEEECH--
T ss_pred EeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcch-hhcchhHH-HHhhhCCCEEEEecchhhcCCcccCeEEEEeCH--
Confidence 55 788999999999999999989 999999997 44321111 1112 3468999999996 577889999976
Q ss_pred CCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCC
Q 012104 261 KPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340 (471)
Q Consensus 261 ~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~ 340 (471)
++.+.+.....++ +++...+++...+++. ..++++..+++.++++++.+.|++.|+.+. +
T Consensus 219 -------------~~~~~l~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~- 278 (335)
T 1uu1_A 219 -------------KFIDAYNRVRLPF---NVSYVSQMFAKVALDH--REIFEERTKFIVEERERMKSALREMGYRIT-D- 278 (335)
T ss_dssp -------------HHHHHHHHHSCTT---CSCHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHTCCBC-C-
T ss_pred -------------HHHHHHHHhcCCC---CcCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHCCcEEc-C-
Confidence 5666665543332 3444455555556654 235677888888999999999988787764 3
Q ss_pred CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 341 TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 341 ~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
....++|+++.. .+..++.+.|.++||.+.+ ..+++||++. .++|++++.+.|.+
T Consensus 279 ~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~----------~~~~iRis~~-------~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 279 SRGNFVFVFMEK--EEKERLLEHLRTKNVAVRS----------FREGVRITIG-------KREENDMILRELEV 333 (335)
T ss_dssp CCSSEEEEECCT--HHHHHHHHHHHHHTEEEEE----------ETTEEEEECC-------CHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCC--CCHHHHHHHHHHCCEEEEE----------CCCeEEEEeC-------CHHHHHHHHHHHHh
Confidence 234567888753 3566787888889999976 1368999972 15678888887764
No 159
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.90 E-value=6.8e-22 Score=207.45 Aligned_cols=339 Identities=14% Similarity=0.122 Sum_probs=208.6
Q ss_pred eeEecCC-CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc-C-CCCCCCceeeecCChHHHH
Q 012104 34 IELIASE-NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-H-LDPTQWGVNVQPYSGSPAN 110 (471)
Q Consensus 34 i~li~s~-n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf-g-~~~~~~~~~v~~~sGt~A~ 110 (471)
++|..++ .+.+|.+++++...+... +|+ ........+++...+.+.+.+ + .....-...+.+.+|++|+
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~~---~y~-----~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVAN---NYP-----VPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTC---SCC-----SSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHhC---CCC-----CCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 4454333 334566666655544321 222 111222345554455555552 3 2221000124355566899
Q ss_pred HHHHHH-----hcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec-CCCCCCCHHHHHHHhhhCCCcE
Q 012104 111 FAAYTA-----VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN-SSTGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 111 ~~~~~a-----ll~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~-~~~~~iD~~~le~~~~~~~pkl 184 (471)
..++.+ +++|||+|++.+|.|.++.. .+...|..+..+++..+ .+++.+|+++|++++. .++++
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~---------~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~-~~~k~ 247 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLR---------IPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD-PSIKA 247 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHT---------SGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC-TTEEE
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHH---------HHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC-CCCeE
Confidence 999988 78999999999999977642 12334544444444321 2458899999999886 47888
Q ss_pred EEE-c-CCCCCccccHH---HHHHHHH-HhCCEEEEeccccchhhccccCCCCC---CCccEEEeCCCCcC--CCCCeEE
Q 012104 185 IIC-G-GSAYPRDWDYA---RFRAVAD-KCGALLLCDMAHISGLVAAQEAANPF---EYCHIVTTTTHKSL--RGPRAGM 253 (471)
Q Consensus 185 Ii~-~-~s~~g~~~d~~---~i~~ia~-~~g~~livD~a~~~glv~~g~~~~p~---~~aDiv~~s~~K~l--~GprgG~ 253 (471)
|++ + +||+|..++.+ +|+++|+ ++|++||+|++|. ++...+ ++.. +..++++.|+||++ +|.|.|+
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~-~~~~~~--~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~ 324 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYG-AFVPNF--KSIYSVVPYNTMLVYSYSKLFGCTGWRLGV 324 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTG-GGSTTC--CCHHHHSGGGEEEEEESHHHHTCGGGCEEE
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCcc-ccccCc--cCHhhcCCCCEEEEecCcccCCCcccceEE
Confidence 875 4 68899998877 6667787 5899999999997 655421 1111 12349999999995 6889999
Q ss_pred EEeeCCCCCCCCCCCCCcccchHhhh------------------------------------hhcCCCCCCCCCcHHHHH
Q 012104 254 IFYRKGPKPPKKGQPEGAVYDFEDKI------------------------------------NFAVFPSLQGGPHNHQIG 297 (471)
Q Consensus 254 i~~~~~~~~~~~~~~~i~~~~l~~~i------------------------------------~~~~~~~~~g~p~~~~ia 297 (471)
++++++ .+.+++ ... .....+++.....+
T Consensus 325 l~~~~~--------------~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~-~~~~~~~~~~~~q~ 389 (533)
T 3f6t_A 325 IALNEK--------------NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSI-GLYHTAGLSTPQQI 389 (533)
T ss_dssp EEEESS--------------CHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTT-TTGGGCSCCHHHHH
T ss_pred EEECcH--------------HHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHH-HHhcccCCChHHHH
Confidence 999874 111111 111 11112223332322
Q ss_pred HHH----HHHH-----HhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCC-----C---------
Q 012104 298 ALA----VALK-----QASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL-----G--------- 354 (471)
Q Consensus 298 a~a----~al~-----~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~-----~--------- 354 (471)
+++ .++. .......++..+.+.++.+.|.+.|. .++.+. .+...+++|+++... +
T Consensus 390 a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~ 467 (533)
T 3f6t_A 390 MEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-APKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTN 467 (533)
T ss_dssp HHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CCCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CCcccc-CCCceEEEEEehHhhhhhccchHHHHHhhc
Confidence 221 2332 11234567777788888899999997 676653 345566788887520 1
Q ss_pred -CCHHH-HHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 355 -LTGNK-VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 355 -~~~~~-~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+..+ +.+++++.||.+.++..|+. ..+++||++.. .++++++++++.|.++++..
T Consensus 468 ~~~~~~~~~~ll~~~GV~v~pg~~f~~----~~~~iRls~a~-----~~~e~i~~~i~~L~~~l~~~ 525 (533)
T 3f6t_A 468 NFEQVDFLLKLAEKNGVVLVDGVGFGA----KPGELRVSQAN-----LPTEDYALIGKQVLELLKEY 525 (533)
T ss_dssp HCCHHHHHHHHHHHTTSSSCTTEEECS----STTEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEEeCCcccCC----CCCEEEEEEee-----CCHHHHHHHHHHHHHHHHHH
Confidence 24444 46777899999998876653 24799999843 34789999999999888654
No 160
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.90 E-value=1.2e-22 Score=209.24 Aligned_cols=300 Identities=10% Similarity=0.064 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceeeecCChH-HHHHHHHHHhcC--CCCEEEEeCCCCCCcccccccccCCccceecc
Q 012104 75 IDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS-PANFAAYTAVLE--PHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 75 ~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt-~A~~~~~~all~--pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
...+++.+++++++++|++.+ .+.+++|| .+|.+++.++.. +||.|++.++.|.+.. +.+...|
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~---------~~~~~~G 197 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH----AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPI---------KAVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---------HHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH---------HHHHHcC
Confidence 556777788999999999762 35566778 577767766543 7888998888776532 1223345
Q ss_pred ceeEEEee-eecCCCCCCCHHHHHHHh-hh---CCCcEEE-Ec-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhc
Q 012104 152 IYFESLPY-KVNSSTGYIDYDKLEEKA-LD---FRPKLII-CG-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVA 224 (471)
Q Consensus 152 ~~~~~~~~-~v~~~~~~iD~~~le~~~-~~---~~pklIi-~~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~ 224 (471)
..+..++. +++ +++.+|+++|++++ .. .++.+|+ +. +|++|...|+++|.++|+++|+++++|+||+... .
T Consensus 198 ~~~~~v~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~-~ 275 (456)
T 2z67_A 198 MNMRLVETVLDG-DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN-N 275 (456)
T ss_dssp CEEEEECCEEET-TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC-H
T ss_pred CCceEEEEeccC-CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHH-H
Confidence 43333332 113 56899999999999 42 3666665 44 4789999999999999999999999999886221 1
Q ss_pred cccCCC---CCC-CccEEEeCCCCcCCCCC-eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHH
Q 012104 225 AQEAAN---PFE-YCHIVTTTTHKSLRGPR-AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGAL 299 (471)
Q Consensus 225 ~g~~~~---p~~-~aDiv~~s~~K~l~Gpr-gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~ 299 (471)
|..+. .+. ++|++++|+||++.||. +|+++++++ ++.+.+... +.+.. +... +.+.
T Consensus 276 -g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~--------------~~~~~l~~~-~~g~~--~~~~-~~~~ 336 (456)
T 2z67_A 276 -YYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA--------------EFIKEISLS-YPGRA--SATP-VVNT 336 (456)
T ss_dssp -HHHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCH--------------HHHHHHHTT-SCSCB--CSHH-HHHH
T ss_pred -HhhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCH--------------HHHhhcCcC-CCCCC--CCCH-HHHH
Confidence 11111 011 68999999999976664 599988653 455555322 22221 1122 3344
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCe---Eec
Q 012104 300 AVALKQASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNI---TVN 372 (471)
Q Consensus 300 a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI---~v~ 372 (471)
..++..+...++++..++..++++++.+.|++. |+.++. +. .++++++...+. ..++.+.|.+.|| .+.
T Consensus 337 ~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~-~~--~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~ 412 (456)
T 2z67_A 337 LVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLD-VE--SPIASCISVNSD-PVEIAAKLYNLRVTGPRGI 412 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCC-CC--CSSEEEEECSSC-HHHHHHHHHHTTEESCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecC-CC--CeEEEEEecccH-HHHHHHHHHHcCCCcceEE
Confidence 445555545578888999999999999999886 876643 33 445556532222 4677888888876 332
Q ss_pred cCC--cCCCC-CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 373 KNA--VFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 373 ~~~--~p~~~-~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
... .++.. .....+++|+++.. +.+++|++++.+.|++++
T Consensus 413 ~~~g~f~G~~~~~~~~~~vr~s~~~----~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 413 KKTDHFGNCYLGTYTHDYIVMNAAI----GVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CTTCHHHHTCSSCCSCCEEEEECCT----TCCHHHHHHHHHHHHTC-
T ss_pred eecCccccccccccCcchhhhhhhc----CCCHHHHHHHHHHHHHHh
Confidence 000 00100 01123689998743 345899999999987643
No 161
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.89 E-value=4.6e-22 Score=201.11 Aligned_cols=347 Identities=16% Similarity=0.169 Sum_probs=205.1
Q ss_pred ccccChH-HHHHHHHHHHhcc--CCeeEecCC--CC-----CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHH
Q 012104 12 LETVDPE-IHDLIEKEKRRQC--RGIELIASE--NF-----TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (471)
Q Consensus 12 ~~~~d~~-~~~~~~~e~~~~~--~~i~li~s~--n~-----~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~ 81 (471)
+...++. ++.+.. +.+... +.|+|..+. ++ +.+++.+++...+.+....+|+.. .| ...+.+.
T Consensus 7 ~~~~~~~~i~~~~~-~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~---~g---~~~lr~~ 79 (401)
T 7aat_A 7 VEMGPPDPILGVTE-AFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPI---AG---LADFTRA 79 (401)
T ss_dssp CCCCCCCHHHHHHH-HHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCT---TC---CHHHHHH
T ss_pred CCCCCCChhHHHHH-HHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCC---CC---CHHHHHH
Confidence 4444443 444443 333332 358886655 22 235788888766543223344331 12 2233322
Q ss_pred HHHHHHHhcCC--CCCCCcee-eecCChHHHHHHHHHHhc---CCCCEEEEeCCCCCCcccccccccCCccceeccceeE
Q 012104 82 CRSRALQTFHL--DPTQWGVN-VQPYSGSPANFAAYTAVL---EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE 155 (471)
Q Consensus 82 ~~~~~~~lfg~--~~~~~~~~-v~~~sGt~A~~~~~~all---~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~ 155 (471)
..+++.+.+|. +.++ +. |++++|++|+..++.++. +|||+|++.+|.|.+|.. .+...|. +
T Consensus 80 ia~~~~~~~~~~~~~~~--i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~---------~~~~~g~--~ 146 (401)
T 7aat_A 80 SAELALGENSEAFKSGR--YVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTP---------IFRDAGL--Q 146 (401)
T ss_dssp HHHHHHCTTCHHHHTTC--EEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHH---------HHHHTTC--E
T ss_pred HHHHhcCCCccccccCc--eEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHH---------HHHHcCC--e
Confidence 23333333332 1321 22 225677789998877654 999999999999987742 1233444 4
Q ss_pred EEeeeec-CCCCCCCHHHHHHHhhhC--CCcEEEEc--CCCCCcccc---HHHHHHHHHHhCCEEEEeccccchhhcccc
Q 012104 156 SLPYKVN-SSTGYIDYDKLEEKALDF--RPKLIICG--GSAYPRDWD---YARFRAVADKCGALLLCDMAHISGLVAAQE 227 (471)
Q Consensus 156 ~~~~~v~-~~~~~iD~~~le~~~~~~--~pklIi~~--~s~~g~~~d---~~~i~~ia~~~g~~livD~a~~~glv~~g~ 227 (471)
++.++++ ++++.+|++.+++.+++. ++++|++. +||+|..++ +++|.++|+++|+++++|++|. ++...+.
T Consensus 147 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~-~~~~~~~ 225 (401)
T 7aat_A 147 LQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQ-GFASGDI 225 (401)
T ss_dssp EEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSCH
T ss_pred eEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccc-cccCCCc
Confidence 5555543 246889999888877643 45676654 789998776 5677788999999999999986 5544332
Q ss_pred C--CCCC----C--CccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccc----hHhhhhhcCCCCCCCCCcH
Q 012104 228 A--ANPF----E--YCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYD----FEDKINFAVFPSLQGGPHN 293 (471)
Q Consensus 228 ~--~~p~----~--~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~----l~~~i~~~~~~~~~g~p~~ 293 (471)
. ..++ . .-.+++.|+||++ +|+|.|++++.... -+ +...+.....++..+. ..
T Consensus 226 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (401)
T 7aat_A 226 NRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRD------------AEEAKRVESQLKILIRPMYSNP-PM 292 (401)
T ss_dssp HHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSS------------HHHHHHHHHHHHHHHHHHHSSC-CH
T ss_pred cccHHHHHHHHhcCCcEEEEecCCcccccccCceEEEEEEeCC------------HHHHHHHHHHHHHHHHhccCCC-Ch
Confidence 1 0011 1 2348899999994 78898998874310 02 2233332211111222 22
Q ss_pred HHHHHHHHHHHHh-c----cHHHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCCCCHHHHHHHH
Q 012104 294 HQIGALAVALKQA-S----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLGLTGNKVEKLC 364 (471)
Q Consensus 294 ~~iaa~a~al~~~-~----~~~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L 364 (471)
...++.+.++... . ..++++..+++.+++++|.+.|++.| +++.. +..++++|+++ +.+.+..+|
T Consensus 293 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~ll 366 (401)
T 7aat_A 293 NGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCFTGL-----KPEQVERLT 366 (401)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEECCC-----CHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEecCC-----CHHHHHHHH
Confidence 2222222233211 0 12355667778888899999998876 44322 33455666543 467777888
Q ss_pred hhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 365 DLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 365 ~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
+++||.+.+ ++||++...+ +++++++++.|.+++
T Consensus 367 ~~~gi~v~~-------------~~Ris~~~~~-----~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 367 KEFSIYMTK-------------DGRISVAGVA-----SSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHCEECCT-------------TCEEEGGGCC-----TTTHHHHHHHHHHHH
T ss_pred HhCCEeccC-------------CCeEEeccCC-----hhhHHHHHHHHHHHh
Confidence 999999842 3799985543 456999999998765
No 162
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.89 E-value=7.6e-22 Score=198.88 Aligned_cols=312 Identities=12% Similarity=0.040 Sum_probs=201.2
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCC--
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP-- 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~p-- 120 (471)
.+|.|.+++...+... ..+ . +.+ ..+...+++ +++++++|.+. .+.++||++|+.+++.++..+
T Consensus 53 ~~p~v~~a~~~~~~~~-~~~--~-~~~-~~~~~~~l~----~~la~~~g~~~-----v~~~~~gt~a~~~al~~~~~~~~ 118 (392)
T 3ruy_A 53 RHPKIINALIDQANRV-TLT--S-RAF-HSDQLGPWY----EKVAKLTNKEM-----VLPMNTGAEAVETAIKTARRWAY 118 (392)
T ss_dssp TCHHHHHHHHHHHTTC-SCC--C-TTS-EETTHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-ccc--c-ccc-CCHHHHHHH----HHHHHhcCCCE-----EEEeCcHHHHHHHHHHHHHHhhh
Confidence 4799999998776432 111 1 111 223444443 67788888442 466789999999999877644
Q ss_pred --------CCEEEEeCCCCCCcccccccccCCccceecc---ceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc-
Q 012104 121 --------HDRIMGLDLPSGGHLTHGYYTSGGKKISATS---IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG- 188 (471)
Q Consensus 121 --------GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g---~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~- 188 (471)
||+|++.++.|.|+.... ....+......+ .......+ ...|+++|+++++ .++++|++.
T Consensus 119 ~~~~~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~l~~~l~-~~~~~v~~~~ 190 (392)
T 3ruy_A 119 DVKKVEANRAEIIVCEDNFHGRTMGA-VSMSSNEEYKRGFGPMLPGIIVI------PYGDLEALKAAIT-PNTAAFILEP 190 (392)
T ss_dssp HTSCCCTTCCEEEEETTCCCCSSHHH-HHTCSCTTTTTTCCSCCSSEEEE------CTTCHHHHHHHCC-TTEEEEEECS
T ss_pred hccCCCCCCcEEEEEcCCcCCCCHhh-hhccCChhhccccCCCCCCCeee------CcccHHHHHHHhc-cCeEEEEEeC
Confidence 789999999986653210 000000000000 00011121 1238999999987 578888864
Q ss_pred -CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCC-C-CC-CccEEEeCCCCcCCC--CCeEEEEeeC
Q 012104 189 -GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAAN-P-FE-YCHIVTTTTHKSLRG--PRAGMIFYRK 258 (471)
Q Consensus 189 -~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~-p-~~-~aDiv~~s~~K~l~G--prgG~i~~~~ 258 (471)
+|++|...| +++|+++|+++|++|++|++|. |+...|.... . .. ..|++++ +|+|+| .|+|++++++
T Consensus 191 ~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~~~--SK~l~gG~~~~G~~~~~~ 267 (392)
T 3ruy_A 191 IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-GLGRTGKVFACDWDNVTPDMYIL--GKALGGGVFPISCAAANR 267 (392)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGGTTTSCCEEEEECH
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-CCCccccchhhhccCCCCCEEEE--chhhhCChhhhEEEEECH
Confidence 678999998 9999999999999999999996 5544333211 1 12 3578765 499987 7899999876
Q ss_pred CCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCc---e
Q 012104 259 GPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY---S 335 (471)
Q Consensus 259 ~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~---~ 335 (471)
++.+.+......+.+ +++...+++...+++... .++..+++.++++++.+.|++.+. .
T Consensus 268 ---------------~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (392)
T 3ruy_A 268 ---------------DILGVFEPGSHGSTF-GGNPLACAVSIAALEVLE---EEKLTERSLQLGEKLVGQLKEIDNPMIT 328 (392)
T ss_dssp ---------------HHHTTCCTTSSCCSS-TTCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTTCCCTTEE
T ss_pred ---------------HHHhhhccCCcCCCC-CCCHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 455444433222222 334444555555666542 156777888899999999988753 2
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
... +. .+++++.+.. +..++.+.|.++||.+.++. .+.+||+++..+ ++++++++.+.|.++
T Consensus 329 ~~~-~~-g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~---------~~~iRi~~~~~~----~~~~i~~~~~~l~~~ 390 (392)
T 3ruy_A 329 EVR-GK-GLFIGIELNE---PARPYCEQLKAAGLLCKETH---------ENVIRIAPPLVI----SEEDLEWAFQKIKAV 390 (392)
T ss_dssp EEE-EE-TTEEEEEESS---CSHHHHHHHHTTTEECCCBT---------TTEEEECCCTTC----CHHHHHHHHHHHHHH
T ss_pred EEE-ee-eeEEEEEEcc---hHHHHHHHHHHCCcEEecCC---------CCEEEEECCCCC----CHHHHHHHHHHHHHH
Confidence 221 22 3455566643 56788888889999997541 478999975544 489999999999876
Q ss_pred H
Q 012104 416 V 416 (471)
Q Consensus 416 l 416 (471)
+
T Consensus 391 l 391 (392)
T 3ruy_A 391 L 391 (392)
T ss_dssp H
T ss_pred h
Confidence 5
No 163
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.89 E-value=2.7e-22 Score=204.38 Aligned_cols=351 Identities=16% Similarity=0.178 Sum_probs=211.1
Q ss_pred ccccccChH-HHHHHHHHHHh-ccCCeeEecC---C-CC---CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHH
Q 012104 10 SSLETVDPE-IHDLIEKEKRR-QCRGIELIAS---E-NF---TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (471)
Q Consensus 10 ~~~~~~d~~-~~~~~~~e~~~-~~~~i~li~s---~-n~---~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~ 80 (471)
+.+...++. ++.+...-... ..+.|+|..+ + +. +++.|.+++...+.+....+|+... | ...+.+
T Consensus 26 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~---g---~~~lr~ 99 (420)
T 4f4e_A 26 SAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPID---G---IAAYDA 99 (420)
T ss_dssp TTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTT---C---CHHHHH
T ss_pred hcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCC---C---cHHHHH
Confidence 445556655 44444432222 2467888777 2 22 2479999998877653323343211 2 123332
Q ss_pred HHHHHHHHhcCC--CCCCCceeeecCChHHHHHHH--HHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEE
Q 012104 81 LCRSRALQTFHL--DPTQWGVNVQPYSGSPANFAA--YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFES 156 (471)
Q Consensus 81 ~~~~~~~~lfg~--~~~~~~~~v~~~sGt~A~~~~--~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~ 156 (471)
...+++....+. +.+.+ ..+++++|++|+.++ +.++++|||+|++.+|.|.++.. .+...|. ++
T Consensus 100 ~ia~~l~~~~~~~~~~~~~-~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~---------~~~~~g~--~~ 167 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRV-VTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRA---------LFDMAGF--EV 167 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCE-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---------HHHHTTC--CE
T ss_pred HHHHHhcCCCccccccCce-EEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHH---------HHHHcCC--eE
Confidence 222333222221 12100 124456677899988 55778999999999999877642 1223443 44
Q ss_pred Eeeee-cCCCCCCCHHHHHHHhhhC--CCcEEEEc--CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhcccc-
Q 012104 157 LPYKV-NSSTGYIDYDKLEEKALDF--RPKLIICG--GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQE- 227 (471)
Q Consensus 157 ~~~~v-~~~~~~iD~~~le~~~~~~--~pklIi~~--~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~- 227 (471)
+.+++ +++++.+|++++++.+++. ++++|+++ +||+|..++. ++|+++|+++|+++++|++|. ++.+.+.
T Consensus 168 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~~~ 246 (420)
T 4f4e_A 168 VAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQ-GFGESIEA 246 (420)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCTTG
T ss_pred EEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccc-cccCCcch
Confidence 55555 3456889999999999753 44666654 7899988765 577788999999999999996 6665431
Q ss_pred CCCCC------CCccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHh----hhhhcCCCCCCCCCcHHH
Q 012104 228 AANPF------EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFED----KINFAVFPSLQGGPHNHQ 295 (471)
Q Consensus 228 ~~~p~------~~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~----~i~~~~~~~~~g~p~~~~ 295 (471)
...++ ....+++.|+||++ +|.|.|+++..... -++.+ .+.........+.| ...
T Consensus 247 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (420)
T 4f4e_A 247 DAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALSIITDS------------KDEAARVLSQLKRVIRTNYSNPP-THG 313 (420)
T ss_dssp GGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEEEECSS------------HHHHHHHHHHHHHHHHTTTSSCC-SHH
T ss_pred hhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEEEEcCC------------HHHHHHHHHHHHHHHhcccCCCC-HHH
Confidence 11111 12358899999995 58899998753210 02222 22221111222223 333
Q ss_pred HHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhh
Q 012104 296 IGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDL 366 (471)
Q Consensus 296 iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~ 366 (471)
.++.+.++.... ..++++..+++.++++.+.+.|++. |+.+.. +..+.++|+++ +.+.+.+.|++
T Consensus 314 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~~l~~ 387 (420)
T 4f4e_A 314 GAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGL-----TSAQVDRLREE 387 (420)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCC-----CHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCC-----CHHHHHHHHHh
Confidence 333333343211 2245677778888899999999886 565533 23455666543 56778889999
Q ss_pred cCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 367 CNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 367 ~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
+||.+.++ .||++..+ ++++++++.+.|.+++
T Consensus 388 ~gI~v~~~-------------~Ris~~~~-----~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 388 FGIYAVST-------------GRICVAAL-----NTRNLDVVANAIAAVL 419 (420)
T ss_dssp HCEECCTT-------------SEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred CCEEecCC-------------CeEEEecC-----CHHHHHHHHHHHHHHh
Confidence 99998642 39988433 3567999998888765
No 164
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.89 E-value=1e-21 Score=198.82 Aligned_cols=325 Identities=15% Similarity=0.134 Sum_probs=197.2
Q ss_pred CeeEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHH
Q 012104 33 GIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFA 112 (471)
Q Consensus 33 ~i~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~ 112 (471)
.....++++++.+++.+++.. +.+. ..+|...|+ +.+..+.++ +++++++|.+. .+.++||++|+.+
T Consensus 29 ~~p~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~r~--~~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~a~~~ 95 (398)
T 1gc0_A 29 VPPVYQTATFTFPTVEYGAAC-FAGE-QAGHFYSRI--SNPTLNLLE----ARMASLEGGEA-----GLALASGMGAITS 95 (398)
T ss_dssp SCCBCCCSCBCCC-------------------------CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH
T ss_pred CCCccCCCccccCCHHHHHHh-hcCC-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHH
Confidence 446677788888888777652 2222 123333332 334444554 67888999863 4678899999999
Q ss_pred HHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CC
Q 012104 113 AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GS 190 (471)
Q Consensus 113 ~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s 190 (471)
++.++++|||+|++.++.|+++..... ......| .+++.++. .|++++++.+++ ++++|++. +|
T Consensus 96 ~l~~~~~~gd~vl~~~~~~~~~~~~~~-----~~~~~~g--~~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~n 161 (398)
T 1gc0_A 96 TLWTLLRPGDEVLLGNTLYGCTFAFLH-----HGIGEFG--VKLRHVDM------ADLQALEAAMTP-ATRVIYFESPAN 161 (398)
T ss_dssp HHHHHCCTTCEEEEESSCCSHHHHHHH-----HTGGGGT--CEEEEECT------TCHHHHHHHCCT-TEEEEEEESSCT
T ss_pred HHHHHhcCCCEEEEeCCCchhHHHHHH-----HHHHHcC--CEEEEECC------CCHHHHHHhcCC-CCeEEEEECCCC
Confidence 999999999999999999987642110 0001223 34444422 389999999874 78888754 67
Q ss_pred CCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCCCcCCCCC---eEEEEeeCCCCCCCCC
Q 012104 191 AYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKG 266 (471)
Q Consensus 191 ~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~ 266 (471)
++|...|+++|+++|+++|+++++|++|..+.. ..++. ++|+++.|+||++.||. +|+++++++
T Consensus 162 ptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~-----~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~------- 229 (398)
T 1gc0_A 162 PNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-----QRPLELGADLVVHSATKYLSGHGDITAGIVVGSQA------- 229 (398)
T ss_dssp TTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-----CCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHH-------
T ss_pred CCcccccHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCceEEEECCccccCCCCCCeEEEEEEChH-------
Confidence 899999999999999999999999999986543 22344 68999999999987764 589888763
Q ss_pred CCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC-ce----------
Q 012104 267 QPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG-YS---------- 335 (471)
Q Consensus 267 ~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g-~~---------- 335 (471)
.+.+.+.........++++....++...+++ .+....++..+|++.+.+.|++.+ +.
T Consensus 230 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~ 297 (398)
T 1gc0_A 230 -------LVDRIRLQGLKDMTGAVLSPHDAALLMRGIK-----TLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASF 297 (398)
T ss_dssp -------HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC-----
T ss_pred -------HHHHHHHHHhhccCCCCCCHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCC
Confidence 2332333221110112333333333223332 345667778889999999998752 22
Q ss_pred ----EeeC--CCCCeeEEEEccCCCCCHHHHHHHHhhcCeEecc---CCc------CCC-----CC-------CCCCCee
Q 012104 336 ----LVTG--GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNK---NAV------FGD-----SS-------ALAPGGV 388 (471)
Q Consensus 336 ----i~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~---~~~------p~~-----~~-------~~~~~~i 388 (471)
+... ....+++.+++.. +.+.+.+.|++.+|.+.. +.. |.. .+ ...++.|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~i 374 (398)
T 1gc0_A 298 PQYTLARQQMSQPGGMIAFELKG---GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLV 374 (398)
T ss_dssp -----------CCTTEEEEEETT---HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEE
T ss_pred cCHHHHHhhCCCCceEEEEEECC---CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeE
Confidence 1110 0124455666642 235678888888887654 211 100 00 0124799
Q ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 389 RIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 389 Rig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
||+++.. .++++++.+.++|.++
T Consensus 375 Ris~g~~----~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 375 RLSVGLE----DIDDLLADVQQALKAS 397 (398)
T ss_dssp EEECCSS----CHHHHHHHHHHHHHHH
T ss_pred EEEeCcC----CHHHHHHHHHHHHHhc
Confidence 9998654 3478888888887653
No 165
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.89 E-value=3.7e-22 Score=202.58 Aligned_cols=346 Identities=14% Similarity=0.139 Sum_probs=211.1
Q ss_pred cccccChHHHHHHHHHHHhc--cCCeeEecCC----C---CCcHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHH
Q 012104 11 SLETVDPEIHDLIEKEKRRQ--CRGIELIASE----N---FTSFAVIEALGS-ALTNKYSEGMPGNRYYGGNEFIDEIEN 80 (471)
Q Consensus 11 ~~~~~d~~~~~~~~~e~~~~--~~~i~li~s~----n---~~s~~v~~a~~~-~l~~~~~~g~~~~r~~~g~~~~~~lE~ 80 (471)
++....+.....+.++.+.. .+.|+|..+. + .+++.|.+++.. .+......+|.. ......+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~------~~g~~~lr~ 80 (412)
T 1yaa_A 7 NIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLG------ITGLPSLTS 80 (412)
T ss_dssp TCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCC------TTCCHHHHH
T ss_pred cCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCC------CCCcHHHHH
Confidence 34445444333344343332 4567886554 2 467899999987 664221122321 112234443
Q ss_pred HHHHHHHHhcC--CCCCCCceeee--cCChHHHHHHH--HHHhcCCCCEEEEeCCCCCCcccccccccCCccceecccee
Q 012104 81 LCRSRALQTFH--LDPTQWGVNVQ--PYSGSPANFAA--YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (471)
Q Consensus 81 ~~~~~~~~lfg--~~~~~~~~~v~--~~sGt~A~~~~--~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~ 154 (471)
...+++...+| ++.+. + +. +++|++|+.++ +..++.|||+|++.+|.|.++.. .+...| .
T Consensus 81 ~ia~~~~~~~~~~~~~~~--i-~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~---------~~~~~g--~ 146 (412)
T 1yaa_A 81 NAAKIIFGTQSDALQEDR--V-ISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMA---------IFENQG--L 146 (412)
T ss_dssp HHHHHHHCTTCHHHHTTC--E-EEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHH---------HHHTTT--C
T ss_pred HHHHHHhcCCCCCCCcce--E-EEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHH---------HHHHcC--c
Confidence 33333333233 12321 2 33 66778898887 34556899999999999987642 122234 3
Q ss_pred EEEeeee-cCCCCCCCHHHHHHHhhhCC--CcEEE-Ec-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccc
Q 012104 155 ESLPYKV-NSSTGYIDYDKLEEKALDFR--PKLII-CG-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQ 226 (471)
Q Consensus 155 ~~~~~~v-~~~~~~iD~~~le~~~~~~~--pklIi-~~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g 226 (471)
+++.+++ +++++.+|++++++.+.+.+ ..+++ ++ +||+|..++. ++|.++|+++|+++|+|++|. ++.+.+
T Consensus 147 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~ 225 (412)
T 1yaa_A 147 KTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQ-GFATGD 225 (412)
T ss_dssp CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTSSSC
T ss_pred eEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCc
Confidence 4555555 44467899999999987643 23444 34 7889998765 467788999999999999996 554432
Q ss_pred ---cC-CC-CCC--C----ccEEEeCCCCcCC--CCCeEEEE--e-----eCCCCCCCCCCCCCcccc----hHhhhhhc
Q 012104 227 ---EA-AN-PFE--Y----CHIVTTTTHKSLR--GPRAGMIF--Y-----RKGPKPPKKGQPEGAVYD----FEDKINFA 282 (471)
Q Consensus 227 ---~~-~~-p~~--~----aDiv~~s~~K~l~--GprgG~i~--~-----~~~~~~~~~~~~~i~~~~----l~~~i~~~ 282 (471)
.. +. .+. + -+++++|+||++. |.|.|+++ + ++ + +.+.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~---------------~~~~~l~~~l~~~ 290 (412)
T 1yaa_A 226 LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNK---------------TIKPAVTSQLAKI 290 (412)
T ss_dssp HHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHH---------------HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCH---------------HHHHHHHHHHHHH
Confidence 11 10 111 2 3588999999963 66779988 6 33 3 45555442
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCC
Q 012104 283 VFPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPL 353 (471)
Q Consensus 283 ~~~~~~g~p~~~~iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~ 353 (471)
..... ++++....++...+++... ..++++..+++.++++.+.+.|++.| +++.. +..+.++|++
T Consensus 291 ~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~---- 364 (412)
T 1yaa_A 291 IRSEV-SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV-NQCGMFSFTG---- 364 (412)
T ss_dssp HHTTT-SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH-HCCSSEEECC----
T ss_pred Hhhcc-CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec-cCceEEEeeC----
Confidence 21222 2334444444445555431 12456777788888999999998765 66543 2344555653
Q ss_pred CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 354 GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 354 ~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
++...+..+|+++||.+.+ ++||++.. .++++++++.+.|.++++
T Consensus 365 -~~~~~~~~~l~~~gi~v~~-------------~~Ris~~~-----~~~~~i~~~~~~l~~~~~ 409 (412)
T 1yaa_A 365 -LTPQMVKRLEETHAVYLVA-------------SGRASIAG-----LNQGNVEYVAKAIDEVVR 409 (412)
T ss_dssp -CCHHHHHHHHHHHCEECCT-------------TSEEEGGG-----CCTTTHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHhCCEEecc-------------CcEEEEcc-----CCHhHHHHHHHHHHHHHH
Confidence 3456778888889999853 48999853 246899999999888765
No 166
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.89 E-value=1.2e-21 Score=203.44 Aligned_cols=332 Identities=11% Similarity=0.040 Sum_probs=209.2
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCC------CceeeecCChHHHHHHHHHHhc
Q 012104 45 FAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQ------WGVNVQPYSGSPANFAAYTAVL 118 (471)
Q Consensus 45 ~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~------~~~~v~~~sGt~A~~~~~~all 118 (471)
..+.+++.+.+ |.+..+ |.......++|+.+++++++++|++.+. .+..+.+++||+||..++.++.
T Consensus 88 ~~~~~~~~~~~-n~~~~~------~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 88 AMLADMLCGAI-GCIGFS------WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHH-CCCCSS------GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CcCccc------cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHH
Confidence 34566666555 322211 2233556788988899999999997521 0124667889999998887763
Q ss_pred CC---------CC--------E--EEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh
Q 012104 119 EP---------HD--------R--IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD 179 (471)
Q Consensus 119 ~p---------GD--------~--Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~ 179 (471)
.+ || . |++.++.|.++. +.+...|. +++.++++ +++.+|+++|++++.+
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~---------~~~~~~G~--~v~~v~~d-~~~~~d~~~L~~~i~~ 228 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVE---------RAGLIGGV--KLKAIPSD-GKFAMRASALQEALER 228 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHH---------HHHHHHTC--EEEEECCC-TTSCCCHHHHHHHHHH
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHH---------HHHHhCCC--ceEEeecC-CCCCCCHHHHHHHHHH
Confidence 21 43 3 777887765432 12234454 45556666 5789999999999964
Q ss_pred CC-----CcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCC---CCCCCccEEEeCCCCcCCCC
Q 012104 180 FR-----PKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA---NPFEYCHIVTTTTHKSLRGP 249 (471)
Q Consensus 180 ~~-----pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~---~p~~~aDiv~~s~~K~l~Gp 249 (471)
.. |.+|++. .|++|...|+++|+++|+++|+++++|++|+.+........ ..+.++|++++++||++.+|
T Consensus 229 ~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p 308 (486)
T 1js3_A 229 DKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308 (486)
T ss_dssp HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC
T ss_pred HHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC
Confidence 21 2355533 67899999999999999999999999999985543221111 12346899999999998766
Q ss_pred -CeEEEEeeCCCCCCCCCCCCCcccchHhhhhh---cCCC--------------CCCCCCcHHHHHHHHHHHHHhccHHH
Q 012104 250 -RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF---AVFP--------------SLQGGPHNHQIGALAVALKQASTPAF 311 (471)
Q Consensus 250 -rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~---~~~~--------------~~~g~p~~~~iaa~a~al~~~~~~~~ 311 (471)
++|+++++++. .+.+.+.. .... ..+++... ...++.++++.+...++
T Consensus 309 ~~~G~l~~~~~~-------------~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~ 374 (486)
T 1js3_A 309 FDCSAMWVKRRT-------------DLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGL 374 (486)
T ss_dssp SSCEEEEESCHH-------------HHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHH-------------HHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHH
Confidence 55999987641 01121110 0000 01111111 12344455555545678
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEE
Q 012104 312 KAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRI 390 (471)
Q Consensus 312 ~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRi 390 (471)
++..++..++++++.+.|++. |++++..+ ..+++.+.+.+..-...++.+.|.+.|+.+....... ..+.+|+
T Consensus 375 ~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~-----~~~~lRi 448 (486)
T 1js3_A 375 QAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLR-----GQFVLRF 448 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEET-----TEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEEEC-----CEEEEEE
Confidence 889999999999999999987 89886433 3345555554211013567777777786542211111 2468999
Q ss_pred ecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 391 GTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 391 g~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++... ..+++|++++.+.|.+++..
T Consensus 449 ~~~~~---~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 449 AICSR---KVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp ECCCT---TCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCC---CCCHHHHHHHHHHHHHHHHH
Confidence 96322 23489999999999887754
No 167
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.88 E-value=8.1e-21 Score=194.66 Aligned_cols=312 Identities=16% Similarity=0.092 Sum_probs=198.7
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc----
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all---- 118 (471)
.+|.|.+++...+.... +.+..| ..+...+++ +++++++|.+. .+.++||++|+.+++.++.
T Consensus 93 ~~p~v~~Ai~~~~~~~~---~~~~~~--~~~~~~~l~----~~la~~~g~~~-----v~~~~sGseA~~~al~~~~~~~~ 158 (439)
T 2oat_A 93 CHPKIVNALKSQVDKLT---LTSRAF--YNNVLGEYE----EYITKLFNYHK-----VLPMNTGVEAGETACKLARKWGY 158 (439)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCTTS--EESSHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---cccCcc--CCHHHHHHH----HHHHHhcCCCE-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 57999999988774421 111112 123334443 56777788543 4567899999999998764
Q ss_pred -----CCC-CEEEEeCCCCCCcccccccccCCccceeccc-----e-----eEEEeeeecCCCCCCCHHHHHHHhhhCCC
Q 012104 119 -----EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSI-----Y-----FESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (471)
Q Consensus 119 -----~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~-----~-----~~~~~~~v~~~~~~iD~~~le~~~~~~~p 182 (471)
.|| |+|++.++.|.|..... +...+. . ..++.++ ..|+++|++.++..++
T Consensus 159 ~~~g~~~g~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~ 224 (439)
T 2oat_A 159 TVKGIQKYKAKIVFAAGNFWGRTLSA--------ISSSTDPTSYDGFGPFMPGFDIIP------YNDLPALERALQDPNV 224 (439)
T ss_dssp HTTCCCTTCCEEEEETTCCCCSSHHH--------HTTCCCHHHHTTSCSCCTTEEEEC------SSCHHHHHHHTTSTTE
T ss_pred hccCCCCCCCeEEEEcCCCCCCCHhH--------hhcCCChhcccCCCCCCCCeEEeC------CCCHHHHHHHhCCCCE
Confidence 467 99999998886543110 111110 0 1122221 2489999999854467
Q ss_pred cEEEEcC--CCCCccc----cHHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCCC--CCe
Q 012104 183 KLIICGG--SAYPRDW----DYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG--PRA 251 (471)
Q Consensus 183 klIi~~~--s~~g~~~----d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~G--prg 251 (471)
++|++.+ +++|... ++++|+++|+++|++||+|++|. |+...|... ..+. ..|++ |++|++.| .++
T Consensus 225 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G~~~~ 301 (439)
T 2oat_A 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIV--LLGKALSGGLYPV 301 (439)
T ss_dssp EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCC
T ss_pred EEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCCcchhHHHhCCCCcEE--EecccccCCCCCe
Confidence 8888873 4467666 79999999999999999999994 764333211 1112 46877 66799865 479
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
|++++++ ++.+.+......+..++ +....++...+++.+.. .++.+++.++.++|.+.|++
T Consensus 302 G~v~~~~---------------~~~~~l~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 362 (439)
T 2oat_A 302 SAVLCDD---------------DIMLTIKPGEHGSTYGG-NPLGCRVAIAALEVLEE---ENLAENADKLGIILRNELMK 362 (439)
T ss_dssp EEEEECH---------------HHHTTSCTTSSCCSSTT-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECH---------------HHHhccCCCCcccCCCc-CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Confidence 9999987 44444433222222233 33333444445655432 24667788889999999988
Q ss_pred CCceEeeC-CCCCeeEEEEccCC-CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 332 KGYSLVTG-GTENHLVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 332 ~g~~i~~~-~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
.++.++.. .....++++++... +.+..++.+.|.++||.+.+. ..+.+||+++.. .+++|++++.
T Consensus 363 l~~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~---------~~~~iRi~~~~~----~t~e~i~~~l 429 (439)
T 2oat_A 363 LPSDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT---------HGDIIRFAPPLV----IKEDELRESI 429 (439)
T ss_dssp SCTTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS---------SSSEEEECCCTT----CCHHHHHHHH
T ss_pred hcCCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC---------CCCEEEEECccC----CCHHHHHHHH
Confidence 76543210 11234667777542 145778888888899999752 247899987543 3589999999
Q ss_pred HHHHHHHH
Q 012104 410 EFLHRAVT 417 (471)
Q Consensus 410 ~~i~~~l~ 417 (471)
+.|.++++
T Consensus 430 ~~l~~~l~ 437 (439)
T 2oat_A 430 EIINKTIL 437 (439)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 168
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.88 E-value=3.9e-21 Score=197.60 Aligned_cols=348 Identities=15% Similarity=0.143 Sum_probs=206.4
Q ss_pred cccccChH-HHHHHHHHHHhcc--CCeeEecCCC-------CCcHHHHHHHhhhh--hccCCCCCCCCCCCCcchhHHHH
Q 012104 11 SLETVDPE-IHDLIEKEKRRQC--RGIELIASEN-------FTSFAVIEALGSAL--TNKYSEGMPGNRYYGGNEFIDEI 78 (471)
Q Consensus 11 ~~~~~d~~-~~~~~~~e~~~~~--~~i~li~s~n-------~~s~~v~~a~~~~l--~~~~~~g~~~~r~~~g~~~~~~l 78 (471)
.+...++. ++.+.. +.+.+. ..|+|..+.. .+.++|.+++.... ......+|+.. .| ...+
T Consensus 27 ~~~~~~~~~i~~~~~-~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~---~G---~~~l 99 (448)
T 3meb_A 27 GFPASPPDAILNLTV-LYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPV---AG---FPLF 99 (448)
T ss_dssp TCCCCCCCTTHHHHH-HHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCT---TC---CHHH
T ss_pred cCCCCCCChHHHHHH-HHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCC---cc---hHHH
Confidence 34444543 555554 334333 3588854432 34578888865443 11222233221 12 1223
Q ss_pred HHHHHHHHHHh-cCCC-----CCCCceeeecCChHHHHHH--HHHHhcCCCCEEEEeCCCCCCcccccccccCCccce--
Q 012104 79 ENLCRSRALQT-FHLD-----PTQWGVNVQPYSGSPANFA--AYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKIS-- 148 (471)
Q Consensus 79 E~~~~~~~~~l-fg~~-----~~~~~~~v~~~sGt~A~~~--~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~-- 148 (471)
. +.++++ +|.+ .+.. +.+|+.+|++|+.. .+.+++.|||+|++++|.|.+|.. .+.
T Consensus 100 r----~~ia~~l~g~~~~~~~~~~i-~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~---------~~~~~ 165 (448)
T 3meb_A 100 L----EAAQFLMFGKDSKAAQEGRI-ASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYG---------IYDKV 165 (448)
T ss_dssp H----HHHHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHH---------HHHHH
T ss_pred H----HHHHHHhcCCCccccCcCcE-EEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHH---------HHHhh
Confidence 2 334444 4776 2321 22337778889876 567788999999999999987742 122
Q ss_pred --eccceeEEEeeee-cCC-CCCCCHHHHHHHhhhC--CCcEEEEc--CCCCCccccHH---HHHHHHHHhCCEEEEecc
Q 012104 149 --ATSIYFESLPYKV-NSS-TGYIDYDKLEEKALDF--RPKLIICG--GSAYPRDWDYA---RFRAVADKCGALLLCDMA 217 (471)
Q Consensus 149 --~~g~~~~~~~~~v-~~~-~~~iD~~~le~~~~~~--~pklIi~~--~s~~g~~~d~~---~i~~ia~~~g~~livD~a 217 (471)
..| .+++.+++ +++ ++.+|++++++.+++. +++++++. +||+|..++.+ +|+++|+++|+++++|++
T Consensus 166 ~~~~G--~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Dea 243 (448)
T 3meb_A 166 FNKLK--VPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSA 243 (448)
T ss_dssp HCTTT--SCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHhCC--CeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecc
Confidence 334 35556666 544 5899999999999753 34565543 78999988755 588899999999999999
Q ss_pred ccchhhccccC--CCCC----C-Ccc-EEEeCCCCcC--CCCCeEEE--Ee--------eCC-CCCCCCCCCCCcccchH
Q 012104 218 HISGLVAAQEA--ANPF----E-YCH-IVTTTTHKSL--RGPRAGMI--FY--------RKG-PKPPKKGQPEGAVYDFE 276 (471)
Q Consensus 218 ~~~glv~~g~~--~~p~----~-~aD-iv~~s~~K~l--~GprgG~i--~~--------~~~-~~~~~~~~~~i~~~~l~ 276 (471)
|. ++...+.. ..++ . +.+ +++.|+||++ +|.|.|++ ++ +++ .. ..+.
T Consensus 244 y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~-----------~~l~ 311 (448)
T 3meb_A 244 YQ-GFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALS-----------AAMV 311 (448)
T ss_dssp CT-TTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHH-----------HHHH
T ss_pred cc-cccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHH-----------HHHH
Confidence 87 55543310 0011 1 223 7799999985 67888997 66 321 00 0122
Q ss_pred hhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcCCc---------eEeeCCCC
Q 012104 277 DKINFAVFPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKGY---------SLVTGGTE 342 (471)
Q Consensus 277 ~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~g~---------~i~~~~~~ 342 (471)
+.+........ ++++.....+.+.++.... ...+++..+++.++++.|.+.|++.|+ ... .+..
T Consensus 312 ~~l~~~~~~~~-~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~-~~~~ 389 (448)
T 3meb_A 312 SGMTLQIRKTW-SMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHI-LTAI 389 (448)
T ss_dssp HHHHHHHHTTT-SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHH-HHCC
T ss_pred HHHHHHHhccc-CCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCccccccee-CCCc
Confidence 22332211222 2333333334433443210 023466677788888999999988743 222 1233
Q ss_pred CeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 343 NHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 343 ~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+.++|+++ +.+.+..+++++||.+.++. .||++... ++++++++++.|.++++
T Consensus 390 g~~~~~~~-----~~~~~~~ll~~~gV~v~~G~------------gRis~a~~-----~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 390 GMFTFTGL-----TPEHVDYLKEKWSIYLVKAG------------GRMSMCGL-----TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp SSEEECCC-----CHHHHHHHHHHHCEEECSGG------------GEEEGGGC-----CTTTHHHHHHHHHHHHH
T ss_pred eEEEecCC-----CHHHHHHHHHhCCEEEeCCC------------cEEEEecC-----CHHHHHHHHHHHHHHHH
Confidence 45566543 45667778899999996531 39998433 34679999999988876
No 169
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.88 E-value=1.1e-20 Score=189.09 Aligned_cols=303 Identities=16% Similarity=0.124 Sum_probs=194.8
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHH---hc-
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA---VL- 118 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~a---ll- 118 (471)
.++.+++++...+... +.+..+| . .....++ ++++++++|++ + -.+.++||++|+.+++.+ ++
T Consensus 45 ~~~~v~~a~~~~~~~~---~~~~~~y-~-~~~~~~l----~~~la~~~g~~-~---~v~~~~g~t~a~~~~~~~~~~~~~ 111 (375)
T 2eh6_A 45 AYPKLTEALKEQVEKL---LHVSNLY-E-NPWQEEL----AHKLVKHFWTE-G---KVFFANSGTESVEAAIKLARKYWR 111 (375)
T ss_dssp SCHHHHHHHHHHHHHC---SCCCTTB-C-CHHHHHH----HHHHHHTSSSC-E---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc---cccCccc-C-CHHHHHH----HHHHHhhcCCC-C---eEEEeCchHHHHHHHHHHHHHHhc
Confidence 6799999998877542 1222233 1 2222333 46788899983 2 235577888999988865 45
Q ss_pred --CCC-CEEEEeCCCCCCcccccccccCCccceeccce-----eE-----EEeeeecCCCCCCCHHHHHHHhhhCCCcEE
Q 012104 119 --EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----FE-----SLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 119 --~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~-----~~-----~~~~~v~~~~~~iD~~~le~~~~~~~pklI 185 (471)
+|| |+|++.++.|.++.... ....+.. +. +..+ ..+|+++|++.++ .++++|
T Consensus 112 ~~~~g~~~vl~~~~~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~l~~~l~-~~~~~v 176 (375)
T 2eh6_A 112 DKGKNKWKFISFENSFHGRTYGS--------LSATGQPKFHKGFEPLVPGFSYA------KLNDIDSVYKLLD-EETAGI 176 (375)
T ss_dssp HTTCCCCEEEEEBTCCCCSSHHH--------HHHCBCGGGTTTTCSCCSSEEEE------CTTCHHHHHTTCC-TTEEEE
T ss_pred cCCCCCCEEEEECCCcCCCchhh--------hhhcCCccccCCCCCCCCCceeC------CCchHHHHHHHhc-CCeEEE
Confidence 889 99999999986653210 0111110 11 1111 1269999999886 478888
Q ss_pred EEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCeEEEE
Q 012104 186 ICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIF 255 (471)
Q Consensus 186 i~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-GprgG~i~ 255 (471)
++. +|++|...+ +++|+++|+++|++|++|++|. |+...+... ..+. .+|++++| |++. |+|.|+++
T Consensus 177 ~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G~~~ 253 (375)
T 2eh6_A 177 IIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-GIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIGAIL 253 (375)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCEEEE
T ss_pred EEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-CCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeEEEE
Confidence 875 577898878 9999999999999999999998 543322111 1111 37888655 9864 45779998
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCce
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~ 335 (471)
+++ ++.+.+.........+++...+.++ ..+++.. .++.+++.++++++.+.|++.+..
T Consensus 254 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-----~~~~~~~~~~~~~l~~~L~~~~~~ 312 (375)
T 2eh6_A 254 ARE---------------EVAQSFTPGSHGSTFGGNPLACRAG-TVVVDEV-----EKLLPHVREVGNYFKEKLKELGKG 312 (375)
T ss_dssp EEH---------------HHHTTCCTTSCCCSSTTCHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred EcH---------------HHHhhhcCCCCCCCCCCCHHHHHHH-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887 4444444322222233333333322 3345432 156777888899999999887654
Q ss_pred EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 336 i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
.+. ...+++++++.. +..++.+.|.+.||.+.++ ..+.+||+++.. .++++++++.+.|.++
T Consensus 313 ~~~--~~g~~~~~~~~~---~~~~~~~~l~~~gi~~~~~---------~~~~iRi~~~~~----~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 313 KVK--GRGLMLGLELER---ECKDYVLKALEKGLLINCT---------AGKVLRFLPPLI----IQKEHIDRAISVLREI 374 (375)
T ss_dssp EEE--EETTEEEEECSS---CCHHHHHHHHHTTEECEEE---------TTTEEEECCCTT----CCHHHHHHHHHHHHHH
T ss_pred Cce--EEEEEEEEEEcC---cHHHHHHHHHHCCCEEecC---------CCCEEEEECCCC----CCHHHHHHHHHHHHHh
Confidence 332 234567888753 3466777777899998753 146899997543 3489999999998765
No 170
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.88 E-value=2.3e-21 Score=196.30 Aligned_cols=346 Identities=15% Similarity=0.141 Sum_probs=211.2
Q ss_pred cccccChH-HHHHHHHHHHh-ccCCeeEecCC----C---CCcHHHHHHHhhhh-hccCCCCCCCCCCCCcchhHHHHHH
Q 012104 11 SLETVDPE-IHDLIEKEKRR-QCRGIELIASE----N---FTSFAVIEALGSAL-TNKYSEGMPGNRYYGGNEFIDEIEN 80 (471)
Q Consensus 11 ~~~~~d~~-~~~~~~~e~~~-~~~~i~li~s~----n---~~s~~v~~a~~~~l-~~~~~~g~~~~r~~~g~~~~~~lE~ 80 (471)
.+....|. ++.+...-... ..+.|+|..++ + ++++.|.++.. .+ ......+|+.. .|. ..+.+
T Consensus 7 ~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~---~G~---~~lr~ 79 (405)
T 3k7y_A 7 SLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLG---NGT---EDFST 79 (405)
T ss_dssp GCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTT---SSC---HHHHH
T ss_pred cCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCC---CCc---HHHHH
Confidence 45666655 55555433222 24678997664 2 35788888876 33 22222233321 122 23433
Q ss_pred HHHHHHHHhcCCCC-CCCce-eeecCChHHHHHHHHHHhcC--CCCEEEEeCCCCCCcccccccccCCccceeccceeEE
Q 012104 81 LCRSRALQTFHLDP-TQWGV-NVQPYSGSPANFAAYTAVLE--PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFES 156 (471)
Q Consensus 81 ~~~~~~~~lfg~~~-~~~~~-~v~~~sGt~A~~~~~~all~--pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~ 156 (471)
...+++.+..+... .++ + .+++.+|++|+.+++.+++. | |+|++++|.|.+|.. .+...|. ++
T Consensus 80 aia~~~~~~~~~~~~~~~-i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~---------~~~~~g~--~~ 146 (405)
T 3k7y_A 80 LTQNLIFGNNSKYIEDKK-ICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN---------MIESRGF--NL 146 (405)
T ss_dssp HHHHHHHCSSCTTTTTTC-EEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH---------HHHTTTC--EE
T ss_pred HHHHHHcCCCCccccccc-eEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH---------HHHHcCC--eE
Confidence 33344433333221 112 2 24566667899999999887 9 999999999987742 1233443 55
Q ss_pred Eeeee-cCCCCCCCHHHHHHHhhhC-CCcEEEEc---CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhhccccC
Q 012104 157 LPYKV-NSSTGYIDYDKLEEKALDF-RPKLIICG---GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLVAAQEA 228 (471)
Q Consensus 157 ~~~~v-~~~~~~iD~~~le~~~~~~-~pklIi~~---~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv~~g~~ 228 (471)
+.+++ +++++.+|++++++.+.+. ++++|+++ +||+|..++.+ +|.++|+++|+++++|++|. ++.+.+..
T Consensus 147 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~-~l~~~~~~ 225 (405)
T 3k7y_A 147 KYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ-GFGHTNLE 225 (405)
T ss_dssp EEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT-TTSSSSTT
T ss_pred EEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc-cccCCCcc
Confidence 55555 4446889999999998753 45777764 69999998765 55678999999999999997 66654211
Q ss_pred --CCCC----C-Ccc-EEEeCCCCc--CCCCCeEEEEee--CCCCCCCCCCCCCcccchHhhh----hhcCCCCCCCCCc
Q 012104 229 --ANPF----E-YCH-IVTTTTHKS--LRGPRAGMIFYR--KGPKPPKKGQPEGAVYDFEDKI----NFAVFPSLQGGPH 292 (471)
Q Consensus 229 --~~p~----~-~aD-iv~~s~~K~--l~GprgG~i~~~--~~~~~~~~~~~~i~~~~l~~~i----~~~~~~~~~g~p~ 292 (471)
..++ . +.. |++.|++|+ |+|+|.||+++. ++ ++.+.+ ........ +.+.
T Consensus 226 ~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~-~~~~ 290 (405)
T 3k7y_A 226 EDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQ--------------EEKKIVFNNLCFIVRKFY-SSPV 290 (405)
T ss_dssp GGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSH--------------HHHHHHHHHHHHHHHTTT-SSCC
T ss_pred cchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCH--------------HHHHHHHHHHHHHHhccc-CCCc
Confidence 0011 1 112 789999999 579999998652 21 333222 22111111 2333
Q ss_pred HHHHHHHHHHHHHh--c---cHHHHHHHHHHHHHHHHHHHHHH----cCC----ceEeeCCCCCeeEEEEccCCCCCHHH
Q 012104 293 NHQIGALAVALKQA--S---TPAFKAYAKQVKANAVALGNYLT----GKG----YSLVTGGTENHLVLWDLRPLGLTGNK 359 (471)
Q Consensus 293 ~~~iaa~a~al~~~--~---~~~~~~~~~~~~~na~~l~~~L~----~~g----~~i~~~~~~~~~~~v~~~~~~~~~~~ 359 (471)
.....+.+.++..- . ..+.+++.+++.++++.+.+.|+ +.| +++. .+.+++++|+.+.. +.
T Consensus 291 ~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~~-----~~ 364 (405)
T 3k7y_A 291 IHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLLA-----KI 364 (405)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGGG-----GG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cCCceEEEecCCCH-----HH
Confidence 33333333344321 0 12345666778888999999998 776 4553 34567788876642 33
Q ss_pred HHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 360 VEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 360 ~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+.+ |+++||.+.++ + ||++.. .++++++++++.|.++++
T Consensus 365 ~~~-L~~~gV~v~p~------------~-Ris~a~-----~~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 365 AEH-LKTHHIYIINN------------G-RINVSG-----ITKNNVDYIADKICLSLS 403 (405)
T ss_dssp TTT-TTTTTEECCTT------------S-EEEGGG-----CCTTHHHHHHHHHHHHHH
T ss_pred HHH-HHHCCEeecCC------------C-eEEEec-----cCHHHHHHHHHHHHHHHh
Confidence 434 48999998542 1 999833 346899999999998875
No 171
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.88 E-value=7.9e-22 Score=199.49 Aligned_cols=282 Identities=13% Similarity=0.132 Sum_probs=182.2
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++++++++|.+. .+.++||++|+..++.++++|||+|++.++.|+++..... ......| .+++.++.
T Consensus 70 ~~~la~~~g~~~-----~i~~~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g--~~~~~v~~- 136 (398)
T 2rfv_A 70 EKKLAVLERGEA-----GLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLS-----HSMPKFG--INVRFVDA- 136 (398)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHH-----THHHHTT--CEEEEECT-
T ss_pred HHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHH-----HHHHHcC--CEEEEeCC-
Confidence 467888999863 4667899999999999999999999999999876532100 0001233 34444432
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEE
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVT 239 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~ 239 (471)
.|++++++.+.+ ++++|++. +||+|...|+++|+++|+++|+++++|++|..+.. +.++. ++|+++
T Consensus 137 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-----~~~~~~~~di~~ 205 (398)
T 2rfv_A 137 -----AKPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYC-----QQPLQLGADIVV 205 (398)
T ss_dssp -----TSHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSEEE
T ss_pred -----CCHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEEE
Confidence 289999998864 78888754 67899999999999999999999999999985542 12333 689999
Q ss_pred eCCCCcCCCC--C-eEEEEeeCCCCCCCCCCCCCcccchHh-hhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 012104 240 TTTHKSLRGP--R-AGMIFYRKGPKPPKKGQPEGAVYDFED-KINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315 (471)
Q Consensus 240 ~s~~K~l~Gp--r-gG~i~~~~~~~~~~~~~~~i~~~~l~~-~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~ 315 (471)
.|+||++.|| | +|++++++ ++.+ .+.........++++....++...+++. +....
T Consensus 206 ~s~sK~~~~~g~~~~G~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 265 (398)
T 2rfv_A 206 HSVTKYINGHGDVIGGIIVGKQ---------------EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-----LGIRM 265 (398)
T ss_dssp EETTTTTTCSSCCCCEEEEECH---------------HHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-----HHHHH
T ss_pred EeCcccccCCCCceEEEEEECH---------------HHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhh-----HHHHH
Confidence 9999998665 4 49998887 3332 3332211110123343333344344432 34455
Q ss_pred HHHHHHHHHHHHHHHcCC-c--------------eEeeC--CCCCeeEEEEccCCCCCHHHHHHHHhhc---CeEeccCC
Q 012104 316 KQVKANAVALGNYLTGKG-Y--------------SLVTG--GTENHLVLWDLRPLGLTGNKVEKLCDLC---NITVNKNA 375 (471)
Q Consensus 316 ~~~~~na~~l~~~L~~~g-~--------------~i~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~---gI~v~~~~ 375 (471)
++..+|++.+.+.|++.+ + .+... .....++++++.. ......+++++. ||.++.+.
T Consensus 266 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~l~~~~~~~~i~~~~G~ 342 (398)
T 2rfv_A 266 ERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAG---GLEAGRRMINSVELCLLAVSLGD 342 (398)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHTTCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC---CHHHHHHHHHhCCcceeccCCCC
Confidence 667788888999988753 1 11100 0134566777752 123455555554 77777664
Q ss_pred cCC---------CC--C-------CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 376 VFG---------DS--S-------ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 376 ~p~---------~~--~-------~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
.+. .. + ....+.+||+++..+ ++++++++.++|.++
T Consensus 343 ~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~----~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 343 TETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLED----PEDIINDLEHAIRKA 396 (398)
T ss_dssp SSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHHhh
Confidence 311 00 0 012579999986543 488999888888653
No 172
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.88 E-value=3.9e-21 Score=198.33 Aligned_cols=328 Identities=13% Similarity=0.143 Sum_probs=199.4
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC----C
Q 012104 45 FAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE----P 120 (471)
Q Consensus 45 ~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~----p 120 (471)
++|.+++...+.... ..|+......+++ +++++++|.+. .+.++||++|+.+++.++++ |
T Consensus 55 ~~v~~a~~~~~~~~~-------~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~ggt~A~~~al~~~~~~~~~~ 118 (467)
T 1ax4_A 55 NAMSDHQWAAMITGD-------EAYAGSRNYYDLK----DKAKELFNYDY-----IIPAHQGRGAENILFPVLLKYKQKE 118 (467)
T ss_dssp CCEEHHHHHHHHTCC-------CCSSSCHHHHHHH----HHHHHHHCCCE-----EEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcc-------cccccCccHHHHH----HHHHHHcCCCc-----EEEcCCcHHHHHHHHHHHHHhhccC
Confidence 566666655443211 1122333444444 57788888753 35677899999999999988 9
Q ss_pred CCE---EEEeCCCCCCcccccccccCCccceeccceeEEEeeee----c-----CCCCCCCHHHHHHHhhhC---CCcEE
Q 012104 121 HDR---IMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV----N-----SSTGYIDYDKLEEKALDF---RPKLI 185 (471)
Q Consensus 121 GD~---Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v----~-----~~~~~iD~~~le~~~~~~---~pklI 185 (471)
||+ |++..+.|+.... .+...|. +++.... + +.++.+|+++|++++.+. ++++|
T Consensus 119 Gd~~~~viv~~~~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~v 187 (467)
T 1ax4_A 119 GKAKNPVFISNFHFDTTAA---------HVELNGC--KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAI 187 (467)
T ss_dssp TCCSSCEEEESSCCHHHHH---------HHHHTTC--EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEE
T ss_pred CCccceEEEeccccchhhH---------HHhccCC--ceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEE
Confidence 998 8887322221110 1122232 2222211 1 124679999999999753 57887
Q ss_pred EEc--CCCC-Ccccc---HHHHHHHHHHhCCEEEEeccccc-hhh--------ccccCCCCC-----CCccEEEeCCCCc
Q 012104 186 ICG--GSAY-PRDWD---YARFRAVADKCGALLLCDMAHIS-GLV--------AAQEAANPF-----EYCHIVTTTTHKS 245 (471)
Q Consensus 186 i~~--~s~~-g~~~d---~~~i~~ia~~~g~~livD~a~~~-glv--------~~g~~~~p~-----~~aDiv~~s~~K~ 245 (471)
++. +|++ |.+++ +++|+++|+++|++||+|++|.. |.. ..+.....+ ..+|++++|+||+
T Consensus 188 i~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~ 267 (467)
T 1ax4_A 188 VSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD 267 (467)
T ss_dssp EEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTST
T ss_pred EEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEecccc
Confidence 754 5677 67655 56888999999999999999865 322 112110011 2478999999999
Q ss_pred CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc--CCCC--CCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 012104 246 LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA--VFPS--LQGGPHNHQIGALAVALKQASTPAFKAYAKQVKAN 321 (471)
Q Consensus 246 l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~--~~~~--~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~n 321 (471)
+..|-||+++++++. ++.+.+... .+.+ ..++.....+++++.++.....+ +..++..++
T Consensus 268 ~g~~~Gg~~~~~d~~-------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~ 331 (467)
T 1ax4_A 268 PLLNIGGLVAIRDNE-------------EIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEE---EYLHYRIGQ 331 (467)
T ss_dssp TCCSSCEEEEESSCH-------------HHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCH---HHHHHHHHH
T ss_pred CCCCcceEEEeCCHH-------------HHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhh---hHHHHHHHH
Confidence 865557888877310 122222211 0011 12333444445555566655432 234445577
Q ss_pred HHHHHHHHHcCCceEeeCCCCCeeEEEE-------ccCCCCCHHHHHHHH-hhcCeEecc-CCcC-CCC------CCCCC
Q 012104 322 AVALGNYLTGKGYSLVTGGTENHLVLWD-------LRPLGLTGNKVEKLC-DLCNITVNK-NAVF-GDS------SALAP 385 (471)
Q Consensus 322 a~~l~~~L~~~g~~i~~~~~~~~~~~v~-------~~~~~~~~~~~~~~L-~~~gI~v~~-~~~p-~~~------~~~~~ 385 (471)
++.|.+.|++.|++++ .+..++++|++ +...+.+..++.+.| .++||.+.+ +..+ +.. .+...
T Consensus 332 ~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~ 410 (467)
T 1ax4_A 332 VKYLGDRLREAGIPIQ-YPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADM 410 (467)
T ss_dssp HHHHHHHHHHTTCCBC-SSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSC
T ss_pred HHHHHHHHHhCCCCcc-cCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCcccccccccccccccccc
Confidence 8889999988788775 34556788888 322234567777777 999999987 4321 110 11123
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+.+||+++.. .++++|++++.+.|.++++..
T Consensus 411 ~~iRls~~~~---~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 411 EFMRLTIARR---VYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp CEEEEECCTT---SSCHHHHHHHHHHHHTTHHHH
T ss_pred ceEEEecccc---cCCHHHHHHHHHHHHHHHHhh
Confidence 7899998633 245899999999999887653
No 173
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.88 E-value=2.4e-21 Score=190.67 Aligned_cols=282 Identities=14% Similarity=0.130 Sum_probs=183.2
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++++++++|++. .+.++||++|+..++.++++|||+|+++++.|+++..... ......| .+++.++
T Consensus 4 ~~~la~~~g~~~-----~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-----~~~~~~g--~~~~~~~-- 69 (331)
T 1pff_A 4 EGKIAKLEHAEA-----CAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFE-----HQLRKFG--VEVDFID-- 69 (331)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH-----THHHHTT--CEEEEEC--
T ss_pred HHHHHHHhCCCe-----EEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHH-----HHHHhcC--CEEEEeC--
Confidence 367888999873 4667899999999999999999999999999876532100 0001123 3444442
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHH-hCCEEEEeccccchhhccccCCCCCC-CccEE
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADK-CGALLLCDMAHISGLVAAQEAANPFE-YCHIV 238 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~-~g~~livD~a~~~glv~~g~~~~p~~-~aDiv 238 (471)
.+|++++++.++ .++++|++. +|++|...|+++|+++|++ +|+++++|++|..|... .++. ++|++
T Consensus 70 ----~~d~~~l~~~i~-~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~-----~~~~~~~d~~ 139 (331)
T 1pff_A 70 ----MAVPGNIEKHLK-PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILT-----NPLDLGVDIV 139 (331)
T ss_dssp ----TTSTTHHHHTCC-TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHC-----CGGGGTCSEE
T ss_pred ----CCCHHHHHHhhc-CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccC-----ChhhcCCcEE
Confidence 258889998886 468888754 6889999999999999999 99999999999866432 2333 58999
Q ss_pred EeCCCCcCCCC--C-eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 012104 239 TTTTHKSLRGP--R-AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYA 315 (471)
Q Consensus 239 ~~s~~K~l~Gp--r-gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~ 315 (471)
++|+||++.|| | +|+++++++ ++.+++......+..++++.....+...+++. +....
T Consensus 140 ~~s~~K~~~~~~~r~~G~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~ 200 (331)
T 1pff_A 140 VHSATKYINGHTDVVAGLVCSRAD--------------IIAKVKSQGIKDITGAIISPHDAWLITRGTLT-----LDMRV 200 (331)
T ss_dssp EEETTTTTSSSSSCCCEEEEECHH--------------HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-----HHHHH
T ss_pred EEECccccCCCCCceEEEEEeCcH--------------HHHHHHHHHHHhhcCCCCCHHHHHHHHcCcch-----HHHHH
Confidence 99999998765 4 789988762 35555655433301223333332222233332 23344
Q ss_pred HHHHHHHHHHHHHHHcC-C--------------ceEeeC--CCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCC
Q 012104 316 KQVKANAVALGNYLTGK-G--------------YSLVTG--GTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFG 378 (471)
Q Consensus 316 ~~~~~na~~l~~~L~~~-g--------------~~i~~~--~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~ 378 (471)
++..+|++.+.+.|++. . +++... ....+++.+.+. +.+++.+.|++.||.+...+..+
T Consensus 201 ~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~s~g~ 276 (331)
T 1pff_A 201 KRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAVSLGG 276 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECSSCCS
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceeccCCCC
Confidence 55666777777777643 1 111110 012345566653 56788999999999765432111
Q ss_pred ------------C---------CCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 379 ------------D---------SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 379 ------------~---------~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
. .....++.+||+++.. .++++++++.++|.++
T Consensus 277 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~----~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 277 PESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCE----NVQDIIDDLKQALDLV 330 (331)
T ss_dssp SSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSS----CHHHHHHHHHHHHHTC
T ss_pred cceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecC----CHHHHHHHHHHHHHHh
Confidence 0 0001247999998654 3589999999888653
No 174
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.88 E-value=5e-21 Score=195.86 Aligned_cols=286 Identities=14% Similarity=0.087 Sum_probs=186.5
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceecc
Q 012104 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 72 ~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
+...+.+| +++++++|++. .|.++||++|+.+++.++++|||+|++.++.|++.+.. + . ..+...|
T Consensus 113 ~~~~~~l~----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~-~-~---~~~~~~G 178 (445)
T 1qgn_A 113 NPTTVVLE----EKISALEGAES-----TLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIF-I-E---TILPKMG 178 (445)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHH-H-H---HTGGGGT
T ss_pred ChHHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHH-H-H---HHHHHcC
Confidence 34444444 67888999863 46678999999999999999999999999988764320 0 0 0011233
Q ss_pred ceeEEEeeeecCCCCCCCHHHHHHHhhhCCC-cEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccC
Q 012104 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRP-KLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (471)
Q Consensus 152 ~~~~~~~~~v~~~~~~iD~~~le~~~~~~~p-klIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~ 228 (471)
.+++.++. .|++++++.+++ ++ ++|++. +||+|.+.|+++|+++|+++|+++++|++|..+..
T Consensus 179 --~~v~~v~~------~d~~~l~~ai~~-~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~----- 244 (445)
T 1qgn_A 179 --ITATVIDP------ADVGALELALNQ-KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN----- 244 (445)
T ss_dssp --CEEEEECS------SCHHHHHHHHHH-SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----
T ss_pred --CEEEEeCC------CCHHHHHHHhcc-CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 34444432 289999999975 56 888754 68899999999999999999999999999985532
Q ss_pred CCCCC-CccEEEeCCCCcCCCCC---eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHH
Q 012104 229 ANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (471)
Q Consensus 229 ~~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~ 304 (471)
..|+. ++|++++|+||++.|+. +|++++++ ++.+++...... ..+.+........ +.
T Consensus 245 ~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~---------------~l~~~l~~~~~~-~g~~~~~~~a~~~---~~ 305 (445)
T 1qgn_A 245 QKALALGADLVLHSATKFLGGHNDVLAGCISGPL---------------KLVSEIRNLHHI-LGGALNPNAAYLI---IR 305 (445)
T ss_dssp CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECH---------------HHHHHHHHHHHH-HCCCCCHHHHHHH---HH
T ss_pred CCccccCCEEEEECCcccccccccceEEEEEECH---------------HHHHHHHHHHHH-hCCCCCHHHHHHH---HH
Confidence 23455 78999999999987764 89999876 454444322111 1112222221111 22
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHcC-Cc-eEeeCC---------------CCCeeEEEEccCCCCCHHHHHHHHhh-
Q 012104 305 QASTPAFKAYAKQVKANAVALGNYLTGK-GY-SLVTGG---------------TENHLVLWDLRPLGLTGNKVEKLCDL- 366 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~-~i~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~- 366 (471)
.+. .+....++..+|++.+.+.|++. ++ .+..++ ....++.+.+.. ..++..+++++
T Consensus 306 ~l~--~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~---~~~~~~~~l~~l 380 (445)
T 1qgn_A 306 GMK--TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDG---DLLTTAKFVDAL 380 (445)
T ss_dssp HGG--GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHC
T ss_pred hHH--HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECC---CHHHHHHHHHhC
Confidence 221 34556677788899999999887 45 343321 124466777653 22334444444
Q ss_pred --cCeEeccCCcCCC------------------CCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 367 --CNITVNKNAVFGD------------------SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 367 --~gI~v~~~~~p~~------------------~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
.+|.++.+....- .....++.||||+. .+|++.+.+.|.+++.
T Consensus 381 ~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--------~Edid~li~~L~~al~ 443 (445)
T 1qgn_A 381 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--------VEDFDDLKADILQALD 443 (445)
T ss_dssp SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--------SSCHHHHHHHHHHHHH
T ss_pred CCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHHHh
Confidence 4677666543110 00122478999973 3578888888888764
No 175
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.88 E-value=6.4e-20 Score=186.40 Aligned_cols=294 Identities=16% Similarity=0.122 Sum_probs=182.8
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++++++++|.+. .+.++||++|+..++.++++|||+|++.++.|++...... ..+...| .+++.++
T Consensus 62 ~~~la~~~g~~~-----~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g--~~~~~~~-- 127 (412)
T 2cb1_A 62 EERLKALEGALE-----AVVLASGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFG-----QVLSLMG--VTVRYVD-- 127 (412)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHH-----HTTTTTT--CEEEEEC--
T ss_pred HHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HHHHHcC--CEEEEEC--
Confidence 367888999863 4667899999999999999999999999998865432100 0011223 3444443
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEE
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVT 239 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~ 239 (471)
+|++++++.+.+ ++++|++. +|++|...|+++|+++|+++|+++++|++|..+- ....++. ++|+++
T Consensus 128 -----~~~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~----~~~~~~~~~~di~~ 197 (412)
T 2cb1_A 128 -----PEPEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAG----ALCRPLAWGAHVVV 197 (412)
T ss_dssp -----SSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTT----TSCCGGGGTCSEEE
T ss_pred -----CCHHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccc----ccCCccccCCeEEE
Confidence 248999998864 78888764 6889999999999999999999999999997541 1122333 689999
Q ss_pred eCCCCcCCCCC--eEEEEeeC-CCC---------CCCCCCCCCcc---cchHhhhhhcCCCCCCCCCcHHHHHHHHHHHH
Q 012104 240 TTTHKSLRGPR--AGMIFYRK-GPK---------PPKKGQPEGAV---YDFEDKINFAVFPSLQGGPHNHQIGALAVALK 304 (471)
Q Consensus 240 ~s~~K~l~Gpr--gG~i~~~~-~~~---------~~~~~~~~i~~---~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~ 304 (471)
+|+||++.||. .|++++.+ ... +...++..... .++.+.+....... .|.......+++ ++.
T Consensus 198 ~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~-~g~~~~~~~a~~--~~~ 274 (412)
T 2cb1_A 198 ESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL-CGMALSPFNAYL--LFQ 274 (412)
T ss_dssp EETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTT-TCCCCCHHHHHH--HHH
T ss_pred ECCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHh-cCCCCChHHhHH--HHc
Confidence 99999987763 35555443 310 00000000000 01222332221111 121111111111 222
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEee-CCC---------------CCeeEEEEccCCCCCHHHHHHHHhhc
Q 012104 305 QASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT-GGT---------------ENHLVLWDLRPLGLTGNKVEKLCDLC 367 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~-~~~---------------~~~~~~v~~~~~~~~~~~~~~~L~~~ 367 (471)
.+ ..+....++..++++++.+.|.+. ++.++. ++. ...++.+.+ + +.+.+.+.|++.
T Consensus 275 ~l--~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~---~-~~~~~~~~l~~~ 348 (412)
T 2cb1_A 275 GL--ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL---G-DLERASRFLGAI 348 (412)
T ss_dssp HG--GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC---S-SHHHHHHHHHHC
T ss_pred CC--chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe---C-CHHHHHHHHHhC
Confidence 22 134566667788999999999886 777542 221 233556666 3 678889999999
Q ss_pred CeEeccCC---------cCCCCC------------CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 368 NITVNKNA---------VFGDSS------------ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 368 gI~v~~~~---------~p~~~~------------~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
||.+ .++ .|.... ...++.||+++...+ ++++++.+.+.|.+
T Consensus 349 ~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~----~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 349 RLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLED----PLDLLALFEEALEA 411 (412)
T ss_dssp SSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSC----HHHHHHHHHHHHHC
T ss_pred Ceee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCC----HHHHHHHHHHHHhh
Confidence 9998 663 221100 011578999986554 37888888888753
No 176
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.88 E-value=1.7e-20 Score=190.24 Aligned_cols=288 Identities=15% Similarity=0.163 Sum_probs=183.8
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceec
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~ 150 (471)
|....+.++ +++++++|.+. .+.++||++|+..++.++++|||+|++.+|.|+++..... ..+...
T Consensus 60 ~~~~~~~l~----~~ia~~~g~~~-----~i~~~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~-----~~~~~~ 125 (404)
T 1e5e_A 60 GNPTVSNLE----GKIAFLEKTEA-----CVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFE-----HALTKF 125 (404)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHH-----THHHHT
T ss_pred cChHHHHHH----HHHHHHhCCCc-----EEEeCChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHH-----HHHHHc
Confidence 344444454 67788899863 4667899999999999999999999999999876532100 001223
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE-c-CCCCCccccHHHHHHHHHH-hCCEEEEeccccchhhcccc
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC-G-GSAYPRDWDYARFRAVADK-CGALLLCDMAHISGLVAAQE 227 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~-~-~s~~g~~~d~~~i~~ia~~-~g~~livD~a~~~glv~~g~ 227 (471)
| .+++.++.+ |++++++.+.+ ++++|++ + +||+|..+|+++|+++|++ +|+++++|++|..+. .
T Consensus 126 g--~~~~~v~~~------d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~-~--- 192 (404)
T 1e5e_A 126 G--IQVDFINTA------IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPM-I--- 192 (404)
T ss_dssp T--CEEEEECTT------STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTT-T---
T ss_pred C--CEEEEECCC------CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhh-h---
Confidence 4 344444322 78999998864 7888875 4 6899999999999999999 999999999998443 2
Q ss_pred CCCCCC-CccEEEeCCCCcCCCC--C-eEEEEeeCCCCCCCCCCCCCcccchHh-hhhhcCCCCCCCCCcHHHHHHHHHH
Q 012104 228 AANPFE-YCHIVTTTTHKSLRGP--R-AGMIFYRKGPKPPKKGQPEGAVYDFED-KINFAVFPSLQGGPHNHQIGALAVA 302 (471)
Q Consensus 228 ~~~p~~-~aDiv~~s~~K~l~Gp--r-gG~i~~~~~~~~~~~~~~~i~~~~l~~-~i~~~~~~~~~g~p~~~~iaa~a~a 302 (471)
..|+. ++|+++.|+||++.|| | +|++++++ ++.+ ++.........++++.....+...+
T Consensus 193 -~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~---------------~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~ 256 (404)
T 1e5e_A 193 -TNPVDFGVDVVVHSATKYINGHTDVVAGLICGKA---------------DLLQQIRMVGIKDITGSVISPHDAWLITRG 256 (404)
T ss_dssp -CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECH---------------HHHHHHHHTCCCCCCCCCCCHHHHHHHHHH
T ss_pred -CCccccCCEEEEEcCccccCCCCCCeEEEEEECH---------------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 12344 6899999999997654 5 49999887 4444 5654432210122333322222234
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHcCC-ce-EeeCC---------------CCCeeEEEEccCCCCCHHHHHHHHh
Q 012104 303 LKQASTPAFKAYAKQVKANAVALGNYLTGKG-YS-LVTGG---------------TENHLVLWDLRPLGLTGNKVEKLCD 365 (471)
Q Consensus 303 l~~~~~~~~~~~~~~~~~na~~l~~~L~~~g-~~-i~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~ 365 (471)
++. .....++..+|++.+.+.|++.. +. +...+ ....++.+++.. ..+++.++|+
T Consensus 257 l~~-----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~ 328 (404)
T 1e5e_A 257 LST-----LNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS---GFEGAKKLLD 328 (404)
T ss_dssp HTT-----HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT---HHHHHHHHHH
T ss_pred HhH-----HHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC---CHHHHHHHHH
Confidence 432 34455666788888888888763 21 11111 013344447642 1355778899
Q ss_pred hcCeEeccCCcCCC----------C------------CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 366 LCNITVNKNAVFGD----------S------------SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 366 ~~gI~v~~~~~p~~----------~------------~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+.||.+ ++..+|. . ....++.+||++.. ++++++.+.|.+++..
T Consensus 329 ~~~i~~-~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--------e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 329 NLKLIT-LAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--------EDADELIADFKQGLDA 394 (404)
T ss_dssp TCSSSE-ESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--------SCHHHHHHHHHHHHHH
T ss_pred hCCCce-eccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--------CCHHHHHHHHHHHHHH
Confidence 999843 3322221 0 00114789999732 5677777777776653
No 177
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.88 E-value=2.1e-21 Score=196.88 Aligned_cols=343 Identities=17% Similarity=0.153 Sum_probs=200.2
Q ss_pred ccccccChH-HHHHHHHHHHhc-cCCeeEecCC--CC-CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHH
Q 012104 10 SSLETVDPE-IHDLIEKEKRRQ-CRGIELIASE--NF-TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRS 84 (471)
Q Consensus 10 ~~~~~~d~~-~~~~~~~e~~~~-~~~i~li~s~--n~-~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~ 84 (471)
.++...+|+ ++.+...-.+.. .+.|+|..+. ++ .++.+.+++.... .....+|.. ......++ +
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~-~~~~~~y~~------~~g~~~lr----~ 86 (409)
T 4eu1_A 18 GPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQAT-LGTNMDYAP------VTGIASFV----E 86 (409)
T ss_dssp ---------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCC-CCSCCCCCC------TTCCHHHH----H
T ss_pred hcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcC-ccccccCCC------CCCcHHHH----H
Confidence 445666666 566665433322 3568887665 23 2455666655442 111122321 11122343 2
Q ss_pred HHHHh-cCCC-----CCCCcee-eecCChHHHHHHH---HHHhcCCCCEEEEeCCCCCCcccccccccCCccceecccee
Q 012104 85 RALQT-FHLD-----PTQWGVN-VQPYSGSPANFAA---YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (471)
Q Consensus 85 ~~~~l-fg~~-----~~~~~~~-v~~~sGt~A~~~~---~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~ 154 (471)
.++++ +|.+ .+. +. +++.+|+.|+.++ +.++++|||+|++.+|.|.++.. .+...|.
T Consensus 87 ~ia~~~~~~~~~~~~~~~--i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---------~~~~~g~-- 153 (409)
T 4eu1_A 87 EAQKLCFGPTCAALRDGR--IASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHES---------IFAKAGM-- 153 (409)
T ss_dssp HHHHHHHCSSCHHHHTTC--EEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHH---------HHHHTTC--
T ss_pred HHHHHHcCCCchhhccCc--eeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHH---------HHHHcCC--
Confidence 33333 4654 221 21 3456677777654 44567999999999999987642 1223443
Q ss_pred EEEeeeec-CCCCCCCHHHHHHHhhhC--CCcEEEE-c-CCCCCccccHHH---HHHHHHHhCCEEEEeccccchhhccc
Q 012104 155 ESLPYKVN-SSTGYIDYDKLEEKALDF--RPKLIIC-G-GSAYPRDWDYAR---FRAVADKCGALLLCDMAHISGLVAAQ 226 (471)
Q Consensus 155 ~~~~~~v~-~~~~~iD~~~le~~~~~~--~pklIi~-~-~s~~g~~~d~~~---i~~ia~~~g~~livD~a~~~glv~~g 226 (471)
+++.++++ .+++.+|++++++.+++. +++++++ + +||+|..++.++ |.++|+++|+++|+|++|. ++.+.+
T Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~-~~~~~~ 232 (409)
T 4eu1_A 154 ELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQ-GFATGQ 232 (409)
T ss_dssp EEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TTTTSC
T ss_pred eEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccc-ccccCC
Confidence 55555552 356789999999998742 3455553 4 789999988655 7889999999999999987 555443
Q ss_pred c---CCC--CC-C-Cc-cEEEeCCCCcC--CCCCeEEE--EeeCCCCCCCCCCCCCcccc----hHhhhhhcCCCCCCCC
Q 012104 227 E---AAN--PF-E-YC-HIVTTTTHKSL--RGPRAGMI--FYRKGPKPPKKGQPEGAVYD----FEDKINFAVFPSLQGG 290 (471)
Q Consensus 227 ~---~~~--p~-~-~a-Div~~s~~K~l--~GprgG~i--~~~~~~~~~~~~~~~i~~~~----l~~~i~~~~~~~~~g~ 290 (471)
. ... .+ + .. .++++|++|++ +|.|.|++ ++.++ + +.+.+......+.. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~--------------~~~~~l~~~~~~~~~~~~~-~ 297 (409)
T 4eu1_A 233 LDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASA--------------EEAKRLVSQLALLIRPMYN-N 297 (409)
T ss_dssp HHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSH--------------HHHHHHHHHHHHHHHHHHS-S
T ss_pred cccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCH--------------HHHHHHHHHHHHHHhhhcC-C
Confidence 1 000 01 1 22 37899999994 67888997 55442 3 44444332111112 2
Q ss_pred CcHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCCCCHHHHH
Q 012104 291 PHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLGLTGNKVE 361 (471)
Q Consensus 291 p~~~~iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~~~~~~~~ 361 (471)
++....++.+.++.... ....++..+++.++++++.+.|++.| +++.. +..+.++|+++ +.+.+.
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~-----~~~~~~ 371 (409)
T 4eu1_A 298 PPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAYTGL-----TREQVE 371 (409)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEECCC-----CHHHHH
T ss_pred CChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEEeCC-----CHHHHH
Confidence 23333334444454210 12356677788889999999999887 55432 33455666433 456677
Q ss_pred HHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 362 KLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 362 ~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
++|+++||.+.++ .||++... ++++++++++.|.+++
T Consensus 372 ~ll~~~gv~v~p~-------------~Ri~~~~~-----~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 372 LLRSEYHIYMTLN-------------GRAAVSGL-----NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp HHHHHHCEECCTT-------------CEEEGGGC-----CTTTHHHHHHHHHHHH
T ss_pred HHHHcCCEEEcCC-------------CEEEEEec-----CHhhHHHHHHHHHHHh
Confidence 8888899998642 48887443 3567999999988765
No 178
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.88 E-value=2.3e-21 Score=195.47 Aligned_cols=348 Identities=12% Similarity=0.117 Sum_probs=204.0
Q ss_pred ccccChHHHHHHHHHHHhc--cCCeeEecCC----CC---CcHHHHHHHhh-hhhccCCCCCCCCCCCCcchhHHHHHHH
Q 012104 12 LETVDPEIHDLIEKEKRRQ--CRGIELIASE----NF---TSFAVIEALGS-ALTNKYSEGMPGNRYYGGNEFIDEIENL 81 (471)
Q Consensus 12 ~~~~d~~~~~~~~~e~~~~--~~~i~li~s~----n~---~s~~v~~a~~~-~l~~~~~~g~~~~r~~~g~~~~~~lE~~ 81 (471)
+...+++....+.+..++. .+.|+|..+. +. +++.|++++.. .+.+....+|+... | ...+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~---g---~~~lr~~ 78 (397)
T 3fsl_A 5 VDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPME---G---LNCYRHA 78 (397)
T ss_dssp CCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTT---C---CHHHHHH
T ss_pred CCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCC---c---hHHHHHH
Confidence 3344444333333333332 3568887772 22 24899999987 66543223443211 2 1233322
Q ss_pred HHHHHHHhcCC--CCCCCceeeecCChHHHHHHH--HHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEE
Q 012104 82 CRSRALQTFHL--DPTQWGVNVQPYSGSPANFAA--YTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESL 157 (471)
Q Consensus 82 ~~~~~~~lfg~--~~~~~~~~v~~~sGt~A~~~~--~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~ 157 (471)
..+++....+. +.+.+ ..+.++||++|+.++ +.++++|||+|++.+|.|.++.. .+...|. +++
T Consensus 79 la~~~~~~~~~~~~~~~~-~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~ 146 (397)
T 3fsl_A 79 IAPLLFGADHPVLKQQRV-ATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA---------IFAGAGF--EVS 146 (397)
T ss_dssp HHHHHHCTTCHHHHTTCE-EEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH---------HHHHTTC--CEE
T ss_pred HHHHHhcCCcccccccce-EEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH---------HHHHcCC--ceE
Confidence 22333222220 22100 124455667899888 45678999999999999876532 1223343 444
Q ss_pred eeee-cCCCCCCCHHHHHHHhhhC--CCcEEEEc--CCCCCccccHH---HHHHHHHHhCCEEEEeccccchhhccc--c
Q 012104 158 PYKV-NSSTGYIDYDKLEEKALDF--RPKLIICG--GSAYPRDWDYA---RFRAVADKCGALLLCDMAHISGLVAAQ--E 227 (471)
Q Consensus 158 ~~~v-~~~~~~iD~~~le~~~~~~--~pklIi~~--~s~~g~~~d~~---~i~~ia~~~g~~livD~a~~~glv~~g--~ 227 (471)
.+++ +++++.+|++++++.++++ ++++++++ +||+|..++.+ +|+++|+++|+++++|++|. ++...+ .
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~ 225 (397)
T 3fsl_A 147 TYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQ-GFGAGMEED 225 (397)
T ss_dssp EECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCT-TSSSCTTGG
T ss_pred EEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCch-hhccCcccc
Confidence 5554 2356889999999999753 34566644 78999987655 77889999999999999996 555431 1
Q ss_pred CCCC--C---CCccEEEeCCCCcC--CCCCeEEEEeeCCCCCCCCCCCCCcccchHhhh----hhcCCCCCCCCCcHHHH
Q 012104 228 AANP--F---EYCHIVTTTTHKSL--RGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKI----NFAVFPSLQGGPHNHQI 296 (471)
Q Consensus 228 ~~~p--~---~~aDiv~~s~~K~l--~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i----~~~~~~~~~g~p~~~~i 296 (471)
.++. + ....+++.|+||++ +|.|.|+++..... .++.+++ ........ ++++....
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~~~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 292 (397)
T 3fsl_A 226 AYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCED------------AEAAGRVLGQLKATVRRNY-SSPPNFGA 292 (397)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEEEEECSS------------HHHHHHHHHHHHHHHHTTT-SSCCSHHH
T ss_pred cHHHHHHHhcCCCEEEEecccccccCcCCCeeEEEEecCC------------HHHHHHHHHHHHHHHHhcc-CCCCHHHH
Confidence 1110 1 12348899999995 58888999764210 0222222 11111112 22232333
Q ss_pred HHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc
Q 012104 297 GALAVALKQA-----STPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC 367 (471)
Q Consensus 297 aa~a~al~~~-----~~~~~~~~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~ 367 (471)
++.+.++... ...+.++..+++.++++.+.+.|++. |+.+.. +..+.++|+++ +.+.+.+.|+++
T Consensus 293 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~ 366 (397)
T 3fsl_A 293 QVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLL-NQRGMFSYTGL-----SAAQVDRLREEF 366 (397)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHH-HCCSSEEECCC-----CHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeec-CCceEEEecCC-----CHHHHHHHHHhC
Confidence 3333333321 02345677778888899999999876 566543 23445666544 467788899999
Q ss_pred CeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 368 NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 368 gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
||.+.++ + ||++...+ +++++++.+.|.++
T Consensus 367 gi~v~~g-----------~--Ris~~~~~-----~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 367 GVYLIAS-----------G--RMCVAGLN-----TANVQRVAKAFAAV 396 (397)
T ss_dssp CEECCTT-----------C--EEEGGGCC-----TTTHHHHHHHHHHH
T ss_pred CEEECCC-----------C--eEEEEecC-----HhhHHHHHHHHHhh
Confidence 9999653 1 99884333 46788888888765
No 179
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.87 E-value=2.2e-21 Score=197.12 Aligned_cols=289 Identities=10% Similarity=0.069 Sum_probs=184.0
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceec
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~ 150 (471)
++...+.+| +++++++|++. .+.++||++|+.+++.++++|||+|++.++.|++.+... . ..+...
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~--~---~~l~~~ 145 (415)
T 2fq6_A 80 GTLTHFSLQ----QAMCELEGGAG-----CVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFC--S---KILSKL 145 (415)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHH--H---HTGGGG
T ss_pred CCchHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHH--H---HHHHHc
Confidence 345555555 57888999864 355789999999999999999999999999887654210 0 001122
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHH--hCCEEEEeccccchhhccc
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADK--CGALLLCDMAHISGLVAAQ 226 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~--~g~~livD~a~~~glv~~g 226 (471)
| .++..++. .|++++++++++ ++|+|++. +|++|.+.|+++|+++|++ +|+++++|++|+.+..
T Consensus 146 G--~~v~~v~~------~d~~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~--- 213 (415)
T 2fq6_A 146 G--VTTSWFDP------LIGADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL--- 213 (415)
T ss_dssp T--CEEEEECT------TCGGGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---
T ss_pred C--cEEEEECC------CCHHHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCccccc---
Confidence 3 34444432 288999988864 68888754 6889999999999999999 9999999999975531
Q ss_pred cCCCCCC-CccEEEeCCCCcCCCCC---eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC-CCCCCCCcHHHHHHHHH
Q 012104 227 EAANPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF-PSLQGGPHNHQIGALAV 301 (471)
Q Consensus 227 ~~~~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~-~~~~g~p~~~~iaa~a~ 301 (471)
..|+. ++|++++|+||++.|+. +|+++++++ +.+++..... .+. .+..........
T Consensus 214 --~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~---------------~~~~l~~~~~~~G~--~~~~~~a~~~~~ 274 (415)
T 2fq6_A 214 --FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNAR---------------CWEQLRENAYLMGQ--MVDADTAYITSR 274 (415)
T ss_dssp --SCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTT---------------THHHHHHHHHHTTC--CCCHHHHHHHHH
T ss_pred --CCccccCCeEEEEeCccccCCCCCceEEEEEeCHH---------------HHHHHHHHHHhcCC--CCCHHHHHHHHh
Confidence 23445 78999999999987654 689988763 3333332111 121 122221111112
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-Cce-EeeCC---------------CCCeeEEEEccCCCCCHHHHHHHH
Q 012104 302 ALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYS-LVTGG---------------TENHLVLWDLRPLGLTGNKVEKLC 364 (471)
Q Consensus 302 al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~-i~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L 364 (471)
+++ .+....++..+|++.+++.|++. ++. +..++ ....++++.+.. +.+..+...++
T Consensus 275 ~l~-----~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~~~~~~~~l 348 (415)
T 2fq6_A 275 GLR-----TLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLNNEELANYL 348 (415)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCCHHHHHHHH
T ss_pred hhh-----HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCCHHHHHHHH
Confidence 222 34556677788999999999876 332 21221 124566777642 11244555666
Q ss_pred hhc---CeEeccCCc--------CCCC--------CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHH
Q 012104 365 DLC---NITVNKNAV--------FGDS--------SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHR 414 (471)
Q Consensus 365 ~~~---gI~v~~~~~--------p~~~--------~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~ 414 (471)
+.. +|.++.+.. |... .....+.||||+...+ .+++++.+.++|.+
T Consensus 349 ~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~----~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 349 DNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLED----VDDLIADLDAGFAR 413 (415)
T ss_dssp TTCSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSC----HHHHHHHHHHHHHT
T ss_pred HhCCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCC----HHHHHHHHHHHHHh
Confidence 554 455565522 2100 0112478999986543 47788888777754
No 180
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.87 E-value=6.4e-21 Score=192.53 Aligned_cols=281 Identities=16% Similarity=0.143 Sum_probs=180.0
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++++++++|.+. .+.++||++|+.+++.+++++||+|++.++.|++..... . ......| ++++.+++
T Consensus 72 ~~~la~~~g~~~-----~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~--~---~~~~~~g--~~~~~v~~- 138 (392)
T 3qhx_A 72 EAALAAVEDAAF-----GRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLI--D---KVFTGWN--VEYTPVAL- 138 (392)
T ss_dssp HHHHHHHTTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHH--H---HTGGGGT--CEEEEECT-
T ss_pred HHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHH--H---HHHHhcC--cEEEEeCC-
Confidence 367889999873 466889999999999999999999999999987653210 0 0011223 34445432
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEE
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVT 239 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~ 239 (471)
.|++++++.+++ ++++|++. +|++|...|+++|+++|+++|+++++|++|..+. ...++. ++|+++
T Consensus 139 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~-----~~~~~~~~~di~~ 207 (392)
T 3qhx_A 139 -----ADLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPA-----LQQPLSLGADVVL 207 (392)
T ss_dssp -----TCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTT-----TCCGGGGTCSEEE
T ss_pred -----CCHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccc-----cCChHHhCCcEEE
Confidence 289999999874 78888754 7889999999999999999999999999997542 223444 689999
Q ss_pred eCCCCcCCCC---CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC-CCCCCCCcHHHHHHHHHHHHHhccHHHHHHH
Q 012104 240 TTTHKSLRGP---RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF-PSLQGGPHNHQIGALAVALKQASTPAFKAYA 315 (471)
Q Consensus 240 ~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~-~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~ 315 (471)
.|+||++.|+ ++|+++++++ ++.+.+..... .+.. +.....+. ++..+. .+....
T Consensus 208 ~S~sK~lg~~g~~~~G~v~~~~~--------------~~~~~l~~~~~~~g~~--~~~~~~~~---~~~~l~--~l~~~~ 266 (392)
T 3qhx_A 208 HSTTKYIGGHSDVVGGALVTNDE--------------ELDQSFAFLQNGAGAV--PGPFDAYL---TMRGLK--TLVLRM 266 (392)
T ss_dssp EETTTTTTCSSCCCCEEEEESCH--------------HHHHHHHHHHHHHCCC--CCHHHHHH---HHHHHT--THHHHH
T ss_pred EcCccccCCCCCceEEEEEECcH--------------HHHHHHHHHHHhcCCC--CCHHHHHH---HHhhhh--HHHHHH
Confidence 9999998664 5899998753 45544433211 1111 22222111 122222 244567
Q ss_pred HHHHHHHHHHHHHHHcC-CceEee-CCC---------------CCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCc--
Q 012104 316 KQVKANAVALGNYLTGK-GYSLVT-GGT---------------ENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-- 376 (471)
Q Consensus 316 ~~~~~na~~l~~~L~~~-g~~i~~-~~~---------------~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~-- 376 (471)
++..++++.+.+.|++. ++..+. ++- ...++.+.+.......+.+...|+..+|.++.+..
T Consensus 267 ~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~s 346 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVES 346 (392)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCc
Confidence 78888999999999876 443222 211 13366777753112344566666677777776643
Q ss_pred ----CCCC---------CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHH
Q 012104 377 ----FGDS---------SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 412 (471)
Q Consensus 377 ----p~~~---------~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i 412 (471)
|... ....++.|||++..- ..+++++.+.++|
T Consensus 347 l~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e----~~~~~i~~l~~al 391 (392)
T 3qhx_A 347 LIEHPSAMTHASTAGSQLEVPDDLVRLSVGIE----DVADLLDDLKQAL 391 (392)
T ss_dssp EEECGGGTSCGGGBTTBCCCCTTEEEEECCSS----CHHHHHHHHHHHH
T ss_pred eeeCcccccccccCHHHcCCCCCeEEEEeccC----CHHHHHHHHHHHh
Confidence 1100 002357899997432 2245555555443
No 181
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.87 E-value=5e-21 Score=194.21 Aligned_cols=346 Identities=14% Similarity=0.073 Sum_probs=209.5
Q ss_pred cccccChHHHHHHHHHHHh--ccCCeeEecCC--C-----CCcHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHH
Q 012104 11 SLETVDPEIHDLIEKEKRR--QCRGIELIASE--N-----FTSFAVIEALGSALTNK-YSEGMPGNRYYGGNEFIDEIEN 80 (471)
Q Consensus 11 ~~~~~d~~~~~~~~~e~~~--~~~~i~li~s~--n-----~~s~~v~~a~~~~l~~~-~~~g~~~~r~~~g~~~~~~lE~ 80 (471)
.+....+.....+.+..+. .++.|+|..+. + .+++.+.+++...+.+. ...+|. .......++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~------~~~g~~~lr- 80 (412)
T 1ajs_A 8 EVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYL------PILGLAEFR- 80 (412)
T ss_dssp TCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCC------CTTCCHHHH-
T ss_pred hCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCC------CCCCCHHHH-
Confidence 3555555444444433332 24578887665 2 35689999987766221 111231 111123343
Q ss_pred HHHHHHHHhc-CC-----CCCCCceeee--cCChHHHHHHHHH--HhcCCC-----CEEEEeCCCCCCcccccccccCCc
Q 012104 81 LCRSRALQTF-HL-----DPTQWGVNVQ--PYSGSPANFAAYT--AVLEPH-----DRIMGLDLPSGGHLTHGYYTSGGK 145 (471)
Q Consensus 81 ~~~~~~~~lf-g~-----~~~~~~~~v~--~~sGt~A~~~~~~--all~pG-----D~Vl~~~~~~~g~~s~~~~~~~g~ 145 (471)
+.+++++ +. +.+. + +. +.||++|+.+++. ++++|| |+|++.+|.|.++..
T Consensus 81 ---~~la~~~~~~~~~~~~~~~--v-~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~--------- 145 (412)
T 1ajs_A 81 ---TCASRLALGDDSPALQEKR--V-GGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNG--------- 145 (412)
T ss_dssp ---HHHHHHHHCTTCHHHHTTC--E-EEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHH---------
T ss_pred ---HHHHHHHhcCCCCccCCCc--E-EEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHH---------
Confidence 3444454 32 2221 2 33 6677889998854 557899 999999999987642
Q ss_pred cceeccceeE-EEeeeec-CCCCCCCHHHHHHHhhhC--CCcEEEE-c-CCCCCccccH---HHHHHHHHHhCCEEEEec
Q 012104 146 KISATSIYFE-SLPYKVN-SSTGYIDYDKLEEKALDF--RPKLIIC-G-GSAYPRDWDY---ARFRAVADKCGALLLCDM 216 (471)
Q Consensus 146 ~~~~~g~~~~-~~~~~v~-~~~~~iD~~~le~~~~~~--~pklIi~-~-~s~~g~~~d~---~~i~~ia~~~g~~livD~ 216 (471)
.+...|. + ++.++++ ++++.+|++++++.+.+. ++++|++ + +||+|..++. ++|+++|+++|++||+|+
T Consensus 146 ~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 223 (412)
T 1ajs_A 146 VFTTAGF--KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDS 223 (412)
T ss_dssp HHHHTTC--SCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHcCC--ceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 1223343 3 4445443 245789999999998764 3456653 3 7889988765 578899999999999999
Q ss_pred cccchhhccc---cCCC--CCC-Ccc--EEEeCCCCcC--CCCCeEEEEe---eCCCCCCCCCCCCCcccchHhhhhhcC
Q 012104 217 AHISGLVAAQ---EAAN--PFE-YCH--IVTTTTHKSL--RGPRAGMIFY---RKGPKPPKKGQPEGAVYDFEDKINFAV 283 (471)
Q Consensus 217 a~~~glv~~g---~~~~--p~~-~aD--iv~~s~~K~l--~GprgG~i~~---~~~~~~~~~~~~~i~~~~l~~~i~~~~ 283 (471)
+|. ++...| ..++ .+. ..| +++.|+||++ +|.|.|++++ +++.. . .+.+.+....
T Consensus 224 ~y~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~---------~--~~~~~~~~~~ 291 (412)
T 1ajs_A 224 AYQ-GFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSI---------L--RVLSQMQKIV 291 (412)
T ss_dssp SCT-TTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHH---------H--HHHHHHHHHH
T ss_pred ccc-cccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHH---------H--HHHHHHHHHH
Confidence 986 555443 1111 011 123 8899999995 3667899998 44100 0 0333333311
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCC
Q 012104 284 FPSLQGGPHNHQIGALAVALKQAS-----TPAFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLG 354 (471)
Q Consensus 284 ~~~~~g~p~~~~iaa~a~al~~~~-----~~~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~ 354 (471)
... .++++....++...+++... ..++++..+++.++.+++.+.|++.| ++++. +..+.++|+++
T Consensus 292 ~~~-~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~---- 365 (412)
T 1ajs_A 292 RVT-WSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHIT-DQIGMFSFTGL---- 365 (412)
T ss_dssp HTT-TSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH-HCCSSEEECCC----
T ss_pred hcc-cCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEc-CCCceEEEeCC----
Confidence 111 22233333444445565431 22456777788888999999998876 66543 23445566543
Q ss_pred CCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 355 LTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 355 ~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+...+..+|+++||.+.+ ++||++... ++++++++.+.|.++++
T Consensus 366 -~~~~~~~~l~~~gv~v~~-------------~~Ris~~~~-----~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 366 -NPKQVEYLINQKHIYLLP-------------SGRINMCGL-----TTKNLDYVATSIHEAVT 409 (412)
T ss_dssp -CHHHHHHHHHTTCEECCT-------------TSEEEGGGC-----CTTTHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHhCCEEecC-------------CcEEEeeeC-----CHHHHHHHHHHHHHHHH
Confidence 356677888899999863 279998532 36789998888888765
No 182
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.87 E-value=2.6e-20 Score=190.52 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=192.2
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc----
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---- 118 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all---- 118 (471)
.+|.|.+++...+.+.. +.... | ..+...++ .+++++++|.+. .+.++||++|+.+++.++.
T Consensus 82 ~~p~v~~ai~~~~~~~~---~~~~~-~-~~~~~~~l----~~~la~~~g~~~-----v~~~~sGseA~~~al~~a~~~~~ 147 (433)
T 1z7d_A 82 CHPNILNAMINQAKNLT---ICSRA-F-FSVPLGIC----ERYLTNLLGYDK-----VLMMNTGAEANETAYKLCRKWGY 147 (433)
T ss_dssp TCHHHHHHHHHHHTTCS---CCCTT-S-EEHHHHHH----HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC---CccCC-c-CCHHHHHH----HHHHHhhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 57899999988774421 11111 2 12233333 356777888543 3567899999999988753
Q ss_pred -----CCC-CEEEEeCCCCCCcccccccccCCccceeccce----------eEEEeeeecCCCCCCCHHHHHHHhhhCCC
Q 012104 119 -----EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTGYIDYDKLEEKALDFRP 182 (471)
Q Consensus 119 -----~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~----------~~~~~~~v~~~~~~iD~~~le~~~~~~~p 182 (471)
.|| |+|+++++.|.|.... .+...+.. ..++.++ ..|+++|+++++..++
T Consensus 148 ~~~g~~~gr~~vi~~~~~yhg~~~~--------~~~~~g~~~~~~~~~p~~~~v~~~~------~~d~~~le~~l~~~~~ 213 (433)
T 1z7d_A 148 EVKKIPENMAKIVVCKNNFSGRTLG--------CISASTTKKCTSNFGPFAPQFSKVP------YDDLEALEEELKDPNV 213 (433)
T ss_dssp HTSCCCTTCCEEEEETTC----------------------------------CEEEEC------TTCHHHHHHHHTSTTE
T ss_pred hccCCCCCCCeEEEEeCCcCCcchh--------hhcccCCccccccCCCCCCCeEEeC------CCCHHHHHHHhCCCCE
Confidence 578 9999999888654321 11122210 1122221 2489999999854467
Q ss_pred cEEEEcC--CCCCccc----cHHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCCC--CCe
Q 012104 183 KLIICGG--SAYPRDW----DYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG--PRA 251 (471)
Q Consensus 183 klIi~~~--s~~g~~~----d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~G--prg 251 (471)
++|++.+ +++|... ++++|+++|+++|++||+|++|. |+...|... ..+. ..|++ |++|++.| .++
T Consensus 214 ~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~ 290 (433)
T 1z7d_A 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPI 290 (433)
T ss_dssp EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCC
T ss_pred EEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCe
Confidence 8888873 4467655 78999999999999999999996 754333211 1112 46777 56799865 478
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
|++++++ ++.+.+......+..++ +....++...+++.+.. .++.+++.++.++|.+.|++
T Consensus 291 G~v~~~~---------------~~~~~l~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 351 (433)
T 1z7d_A 291 SAVLAND---------------DIMLVIKPGEHGSTYGG-NPLAASICVEALNVLIN---EKLCENAEKLGGPFLENLKR 351 (433)
T ss_dssp EEEEECH---------------HHHTTCCTTCCCCTTTT-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECH---------------HHHhhhccccccccCCC-CHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHH
Confidence 9999887 44444433212222222 33333444445655432 24566777788888888876
Q ss_pred C--CceEee-CCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHH
Q 012104 332 K--GYSLVT-GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQI 408 (471)
Q Consensus 332 ~--g~~i~~-~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l 408 (471)
. ++.++. ......++++++.....+..++.+.|.+.||.+.+. ..+.+||+++.. .+++|++++
T Consensus 352 l~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~iRi~~~~~----~t~e~i~~~ 418 (433)
T 1z7d_A 352 ELKDSKIVRDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV---------HDKTIRLTPPLC----ITKEQLDEC 418 (433)
T ss_dssp HHTTCTTEEEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------TTTEEEECCCTT----CCHHHHHHH
T ss_pred HHHhCCCeEEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------CCCEEEEECCcC----CCHHHHHHH
Confidence 4 443211 011234677787542235778888888899999753 146899987543 348999999
Q ss_pred HHHHHHHHHH
Q 012104 409 GEFLHRAVTL 418 (471)
Q Consensus 409 ~~~i~~~l~~ 418 (471)
.+.|.++++.
T Consensus 419 l~~l~~~l~~ 428 (433)
T 1z7d_A 419 TEIIVKTVKF 428 (433)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 183
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.87 E-value=2.2e-20 Score=191.32 Aligned_cols=299 Identities=14% Similarity=0.045 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceeeecCC-hHHHHHHHHHHh-cCCCCEEEEeCCCCCCcccccccccCCccceecccee
Q 012104 77 EIENLCRSRALQTFHLDPTQWGVNVQPYS-GSPANFAAYTAV-LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF 154 (471)
Q Consensus 77 ~lE~~~~~~~~~lfg~~~~~~~~~v~~~s-Gt~A~~~~~~al-l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~ 154 (471)
++....++++++++|++.+ ++..++ ++.++.+++.++ ++|||+|+++++.|+++..-.. ......| .
T Consensus 108 ~~~~~~~~~la~~~g~~~~----~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~-----~~a~~~G--~ 176 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIA----NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLR-----AYLEAVG--A 176 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEE----CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHH-----HHHHHTT--C
T ss_pred HHHHHHHHHHHHHhCCCcc----ceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHH-----HHHHHCC--C
Confidence 3444567889999999753 333344 454555555553 6899999999988765431000 0001134 3
Q ss_pred EEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc-CCCCCccccHHHHHHHHHHhCCEEEEecc-ccchhhccccCCCCC
Q 012104 155 ESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-GSAYPRDWDYARFRAVADKCGALLLCDMA-HISGLVAAQEAANPF 232 (471)
Q Consensus 155 ~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~-~s~~g~~~d~~~i~~ia~~~g~~livD~a-~~~glv~~g~~~~p~ 232 (471)
+++.++. +++.+|+++ +. .++++|++. .|++|...|+++|.++|+++|+++++|.. ++.|. .+.+-
T Consensus 177 ~v~~v~~--~~~~~d~~~----i~-~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~-----~~~~~ 244 (438)
T 1wyu_A 177 KLLTLPL--EGGRTPLPE----VG-EEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGV-----LKPPG 244 (438)
T ss_dssp EEEEECC--BTTBCCCCC----CC-TTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGT-----BCCHH
T ss_pred EEEEEcC--cCCccCHHH----hC-CCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccC-----cCCCc
Confidence 4455543 346788776 43 468877754 68899999999999999999999997754 44343 22222
Q ss_pred C-CccEEEeCCCC-----cCCCCCeEEEEeeCCCCCCCCC---CC-----CCcccch-----HhhhhhcCCCCCCCCCcH
Q 012104 233 E-YCHIVTTTTHK-----SLRGPRAGMIFYRKGPKPPKKG---QP-----EGAVYDF-----EDKINFAVFPSLQGGPHN 293 (471)
Q Consensus 233 ~-~aDiv~~s~~K-----~l~GprgG~i~~~~~~~~~~~~---~~-----~i~~~~l-----~~~i~~~~~~~~~g~p~~ 293 (471)
. ++|++++|.|| ++.||++|++++++++....+. |. +-..|.+ ...++.. .++++.
T Consensus 245 ~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~-----~~t~~~ 319 (438)
T 1wyu_A 245 AYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRA-----KAKSNI 319 (438)
T ss_dssp HHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGG-----GSSCCC
T ss_pred cCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchh-----cccCCc
Confidence 2 68999999777 6889988999998753211000 00 0000000 0000100 112222
Q ss_pred ---HHHHHHHHH--HHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhc
Q 012104 294 ---HQIGALAVA--LKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC 367 (471)
Q Consensus 294 ---~~iaa~a~a--l~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~ 367 (471)
+.+++++++ +......++++..++..++++++.+.|++. |+++......-+.+.+.+ +.+..++.+.|.+.
T Consensus 320 ~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~ 396 (438)
T 1wyu_A 320 TTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALAL---PKDPEAVRRALAER 396 (438)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEEC---SSCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeC---CCCHHHHHHHHHHC
Confidence 344444433 544444567888889999999999999998 999864321112233433 24678888888888
Q ss_pred CeEe--ccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 368 NITV--NKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 368 gI~v--~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
||.+ .++..+ ..+.+||++...+ +++|++++.+.|.+++
T Consensus 397 gi~v~~~~~~~~------~~~~lRis~~~~~----t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 397 GFHGATPVPREY------GENLALFAATELH----EEEDLLALREALKEVL 437 (438)
T ss_dssp TCCCCEECCTTS------CSSEEEEECCTTC----CHHHHHHHHHHHHHHC
T ss_pred Cceecccccccc------CCCeEEEEecccC----CHHHHHHHHHHHHHHh
Confidence 9998 433221 1478999986544 4799999999987653
No 184
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.87 E-value=1.6e-20 Score=189.28 Aligned_cols=314 Identities=15% Similarity=0.085 Sum_probs=199.0
Q ss_pred CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--C
Q 012104 42 FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--E 119 (471)
Q Consensus 42 ~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~ 119 (471)
+.+|.+++++...+.... .+ + +.| ..+.... .++++++++|++.+ ..+.++||++|+.+++.++. .
T Consensus 61 ~~~~~v~~a~~~~~~~~~-~~--~-~~~-~~~~~~~----l~~~la~~~~~~~~---~v~~~~gg~~a~~~al~~~~~~~ 128 (395)
T 1vef_A 61 HGNPEVVEAVKRQAETLM-AM--P-QTL-PTPMRGE----FYRTLTAILPPELN---RVFPVNSGTEANEAALKFARAHT 128 (395)
T ss_dssp BTCHHHHHHHHHHHHHCC-CC--C-TTS-CCHHHHH----HHHHHHHTSCTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC-CC--c-ccc-CCHHHHH----HHHHHHHhcCCCcC---EEEEcCcHHHHHHHHHHHHHHHh
Confidence 368999999988775421 11 1 222 1233333 34678889976543 23556788899999998764 6
Q ss_pred CCCEEEEeCCCCCCcccccccccCCccceecccee-E--EEee--eecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCC
Q 012104 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF-E--SLPY--KVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAY 192 (471)
Q Consensus 120 pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~-~--~~~~--~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~ 192 (471)
+||.|++.++.|.+.... .+...|... . ..++ ++.. -...|+++|++.+. .++++|+++ ++++
T Consensus 129 ~~~~vi~~~~~y~~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~-~~~~d~~~l~~~i~-~~~~~v~~~~~~~~t 198 (395)
T 1vef_A 129 GRKKFVAAMRGFSGRTMG--------SLSVTWEPKYREPFLPLVEPVEF-IPYNDVEALKRAVD-EETAAVILEPVQGEG 198 (395)
T ss_dssp SCCEEEEETTCCCCSSHH--------HHHTCCCHHHHGGGCSCSSCEEE-ECTTCHHHHHHHCC-TTEEEEEECSEETTT
T ss_pred CCCeEEEEcCCcCCCchh--------hhhhcCCcccccccCCCCCCeeE-eCCCcHHHHHHHhc-cCEEEEEEeCccCCC
Confidence 899999999887553211 011122110 0 0010 0000 01359999999987 478998887 4568
Q ss_pred Ccccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-CccEEEeCCCCcCCC-CCeEEEEeeCCCCCC
Q 012104 193 PRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLRG-PRAGMIFYRKGPKPP 263 (471)
Q Consensus 193 g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~aDiv~~s~~K~l~G-prgG~i~~~~~~~~~ 263 (471)
|...+ +++|+++|+++|++|++|++|. |+...|.. .++ . .+|++ |+||++.+ +|.|++++++
T Consensus 199 G~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~----- 269 (395)
T 1vef_A 199 GVRPATPEFLRAAREITQEKGALLILDEIQT-GMGRTGKR-FAFEHFGIVPDIL--TLAKALGGGVPLGVAVMRE----- 269 (395)
T ss_dssp TSEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCEEEEEEH-----
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCch-hHhhhcCCCCCEE--EEcccccCCCceEEEEehH-----
Confidence 98888 9999999999999999999998 65333321 121 2 46877 66999754 5779999887
Q ss_pred CCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEee-CCCC
Q 012104 264 KKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVT-GGTE 342 (471)
Q Consensus 264 ~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~-~~~~ 342 (471)
++.+.+......+.. +++...+++...+++.... .++.+++.++++++.+.|++.+.+++. ....
T Consensus 270 ----------~~~~~l~~~~~~~~~-~~~~~~~~a~~~al~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 335 (395)
T 1vef_A 270 ----------EVARSMPKGGHGTTF-GGNPLAMAAGVAAIRYLER---TRLWERAAELGPWFMEKLRAIPSPKIREVRGM 335 (395)
T ss_dssp ----------HHHHTSCTTSSCCSS-TTCHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ----------HHHhhhccCCcCCCc-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 455544432111111 2344444445456655422 346677888899999999887643211 1123
Q ss_pred CeeEEEEccCCCCCHHHHHHHHh-hcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 343 NHLVLWDLRPLGLTGNKVEKLCD-LCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 343 ~~~~~v~~~~~~~~~~~~~~~L~-~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
.+++++++.. +..++.+.|. ++||.+.++ ..+.+||+++.. .++++++++.+.|.+++
T Consensus 336 g~~~~~~~~~---~~~~l~~~l~~~~gi~v~~~---------~~~~iRi~~~~~----~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 336 GLMVGLELKE---KAAPYIARLEKEHRVLALQA---------GPTVIRFLPPLV----IEKEDLERVVEAVRAVL 394 (395)
T ss_dssp TTEEEEEESS---CSHHHHHHHHHHHCEECEES---------STTEEEECCCTT----CCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcC---hHHHHHHHHHHHCCeEEecC---------CCCEEEEeCCCC----CCHHHHHHHHHHHHHHh
Confidence 4577888753 2466777777 899999763 147899987543 34899999999998765
No 185
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.87 E-value=7.8e-21 Score=199.69 Aligned_cols=339 Identities=14% Similarity=0.113 Sum_probs=203.4
Q ss_pred CeeEecCCC-CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCC--CC-CCCceeeecCCh-H
Q 012104 33 GIELIASEN-FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHL--DP-TQWGVNVQPYSG-S 107 (471)
Q Consensus 33 ~i~li~s~n-~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~--~~-~~~~~~v~~~sG-t 107 (471)
.++|..+++ +.++.+++++...+.. .+||... ++. ...+.++...+.+.++. +. .. .+|..++| +
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~~---~~Y~~~~--g~~---~lr~~ia~~~~~~~~~~~~~~~~~--~~I~~t~G~~ 175 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGILG---CNYPVPP--RML---NISEKIVRQYIIREMGADAIPSES--VNLFAVEGGT 175 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHT---CSCCSSS--SCC---HHHHHHHHHHHHHHTTCTTSCGGG--EEEEEEEHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhhc---CCCCCCc--CCH---HHHHHHHHHHHHHhccCCCCCCCc--ceEEEECCHH
Confidence 355544554 4456677776655421 2344321 111 23344444455554432 11 11 24555555 5
Q ss_pred HHHHHHHHH-----hcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-CCCCCHHHHHHHhhhCC
Q 012104 108 PANFAAYTA-----VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-TGYIDYDKLEEKALDFR 181 (471)
Q Consensus 108 ~A~~~~~~a-----ll~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-~~~iD~~~le~~~~~~~ 181 (471)
+|+..++.+ +++|||+|++++|.|.++.. .+...+.+.++++++.+++ ++.+|+++|++.+. .+
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~---------~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~ 245 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIE---------IPELAQYALEEVAINADPSLNWQYPDSELDKLKD-PA 245 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHH---------HHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TT
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHH---------HHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CC
Confidence 688888887 57999999999999977642 1112333456666666643 36799999988764 47
Q ss_pred CcEEE-Ec-CCCCCccccHH---HHHHHH--HHhCCEEEEeccccchhhccccCCCCCC---CccEEEeCCCCcC--CCC
Q 012104 182 PKLII-CG-GSAYPRDWDYA---RFRAVA--DKCGALLLCDMAHISGLVAAQEAANPFE---YCHIVTTTTHKSL--RGP 249 (471)
Q Consensus 182 pklIi-~~-~s~~g~~~d~~---~i~~ia--~~~g~~livD~a~~~glv~~g~~~~p~~---~aDiv~~s~~K~l--~Gp 249 (471)
+++|+ ++ +||+|..++.+ +|.++| +++|++||+|++|. ++... .++.+. ..++++.|+||++ +|.
T Consensus 246 ~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~-~~~~~--~~s~~~~~~~~~i~~~S~SK~~g~~Gl 322 (546)
T 2zy4_A 246 IKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYG-TFADD--FQSLFAICPENTLLVYSFSKYFGATGW 322 (546)
T ss_dssp EEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTG-GGSTT--CCCHHHHCGGGEEEEEESTTTTTCGGG
T ss_pred CeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcch-hhccc--CcCHHHhCCCCEEEEEeCccccCCCCc
Confidence 88776 55 78999998765 456777 67899999999997 44431 122111 3458999999995 688
Q ss_pred CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-----------------------------------CCCCC-CCCCcH
Q 012104 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-----------------------------------VFPSL-QGGPHN 293 (471)
Q Consensus 250 rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-----------------------------------~~~~~-~g~p~~ 293 (471)
|.|+++++++ ++.+++... ..... .+.+..
T Consensus 323 RiG~~~~~~~--------------~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~ 388 (546)
T 2zy4_A 323 RLGVVAAHQQ--------------NVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTP 388 (546)
T ss_dssp CEEEEEEESS--------------CHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHH
T ss_pred ceEEEEECCH--------------HHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcH
Confidence 9999999874 233332100 00010 122222
Q ss_pred HHHHH-H--HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCC---------------CC
Q 012104 294 HQIGA-L--AVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL---------------GL 355 (471)
Q Consensus 294 ~~iaa-~--a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~---------------~~ 355 (471)
.+.+. + ..++..-.....++..+.+.++.+.+.+.|. .++.+ .++..+.++|+++... +.
T Consensus 389 ~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~ 466 (546)
T 2zy4_A 389 QQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-MPPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQS 466 (546)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SSCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CCccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccC
Confidence 22221 1 1122111122345556666667777777774 44443 2345667789887420 12
Q ss_pred C-HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 356 T-GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 356 ~-~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+ .+.+.++|.+.||.+.++..++. ..+++||++.. ..+++++++++.|.+++...
T Consensus 467 ~~~~~l~~ll~~~gV~v~pG~~F~~----~~~~iRis~~~-----~~~e~i~~~~~~l~~~l~~~ 522 (546)
T 2zy4_A 467 STGDMLFRIADETGIVLLPGRGFGS----NRPSGRASLAN-----LNEYEYAAIGRALRKMADEL 522 (546)
T ss_dssp CHHHHHHHHHHHHSCCCEESSCTTC----SSCEEEEESSS-----SCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEeCccccCC----CCCeEEEEecc-----CCHHHHHHHHHHHHHHHHHH
Confidence 2 23467888999999999876653 24689999842 24789999999998887654
No 186
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.87 E-value=3.6e-21 Score=196.24 Aligned_cols=302 Identities=16% Similarity=0.092 Sum_probs=183.9
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceec
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~ 150 (471)
++...+.+| +++++++|.+. .+.++||+.|+.+++.++++|||+|++.++.|++...... ..+...
T Consensus 80 ~~p~~~~le----~~lA~l~g~~~-----~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~-----~~~~~~ 145 (430)
T 3ri6_A 80 SNPTVEDLE----QRLKNLTGALG-----VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQ-----KTLPSF 145 (430)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHH-----THHHHT
T ss_pred CCHHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHH-----HHHHHc
Confidence 345555665 67888999864 4667899999999999999999999999999876542100 011123
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccC
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEA 228 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~ 228 (471)
| .+++.++.+ |++++++.++. ++++|++. +||+|...|+++|+++|+++|+++++|++|+.+..
T Consensus 146 G--~~~~~v~~~------d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~----- 211 (430)
T 3ri6_A 146 G--IEVRFVDVM------DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL----- 211 (430)
T ss_dssp T--CEEEEECTT------CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----
T ss_pred C--CEEEEeCCC------CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----
Confidence 3 344444322 89999999864 78988754 68999999999999999999999999999986543
Q ss_pred CCCCC-CccEEEeCCCCcCCCC---CeEEEEeeCCCCCCCCCCCCCcc-------cchHhhhhhcCCCCCCCCCcHHHHH
Q 012104 229 ANPFE-YCHIVTTTTHKSLRGP---RAGMIFYRKGPKPPKKGQPEGAV-------YDFEDKINFAVFPSLQGGPHNHQIG 297 (471)
Q Consensus 229 ~~p~~-~aDiv~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~~~i~~-------~~l~~~i~~~~~~~~~g~p~~~~ia 297 (471)
..|.. ++|+++.|+||++.|+ .||+++++...... ..+ .... ..+..++...... ..|+......+
T Consensus 212 ~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~-~~~-~~~~l~~~~g~~~~i~~~~~~~~~-~~g~~~~~~~a 288 (430)
T 3ri6_A 212 LEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWK-SLP-SLAPYYAKAGPMAFLYKARKEVFQ-NLGPSLSPHNA 288 (430)
T ss_dssp CCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGG-GST-TTHHHHHHHGGGHHHHHHHHTHHH-HHCCCCCHHHH
T ss_pred CChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhh-hcc-chhhhhhhhchhhHHHHHHHHHHH-hcCCCCCHHHH
Confidence 34445 6899999999999887 67888865421000 000 0000 0001111110000 11222222222
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-CceEee-CCC---------------CCeeEEEEccCCCCCHHHH
Q 012104 298 ALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-GYSLVT-GGT---------------ENHLVLWDLRPLGLTGNKV 360 (471)
Q Consensus 298 a~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~~-~~~---------------~~~~~~v~~~~~~~~~~~~ 360 (471)
++ +++.+ ..+....++..+|++.+++.|++. ++..+. ++- +.+++++++.. ..+...+
T Consensus 289 ~l--~l~~l--~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-~~~~~~~ 363 (430)
T 3ri6_A 289 YL--QSLGL--ETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-KEASYRF 363 (430)
T ss_dssp HH--HHHHH--HHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS-HHHHHHH
T ss_pred HH--HHhhh--hhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC-HHHHHHH
Confidence 22 22222 245566778889999999999876 555333 221 12278888751 1122334
Q ss_pred HHHHhhcCeEeccCCcCCC---------C--C-------CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 361 EKLCDLCNITVNKNAVFGD---------S--S-------ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 361 ~~~L~~~gI~v~~~~~p~~---------~--~-------~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
.+.|+..++.++.+.+..- . + ...++.|||++. .++.+.+.+.|++++
T Consensus 364 ~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG--------~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 364 MDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG--------IEEIEDLKEDILQAL 429 (430)
T ss_dssp HHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred HHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec--------cCCHHHHHHHHHHhh
Confidence 4444445566665532210 0 0 123568999872 246666666666654
No 187
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.87 E-value=6e-21 Score=193.96 Aligned_cols=289 Identities=17% Similarity=0.155 Sum_probs=184.2
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceecc
Q 012104 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 72 ~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
+...+.+| +++++++|.+. .+.++||+.|+.+++.++++|||+|++.++.|++..... . ......|
T Consensus 80 ~p~~~~l~----~~la~~~g~~~-----~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~--~---~~~~~~g 145 (414)
T 3ndn_A 80 NPTVSVFE----ERLRLIEGAPA-----AFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVC--S---EILPRWG 145 (414)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHH--H---THHHHTT
T ss_pred ChHHHHHH----HHHHHHHCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHH--H---HHHHHcC
Confidence 44555555 67888999754 466889999999999999999999999999987753210 0 0001133
Q ss_pred ceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCC
Q 012104 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (471)
Q Consensus 152 ~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~ 229 (471)
.+++.++.+ |+++++++++. ++++|++. +||+|...|+++|+++|+++|++|++|++|..|.. .
T Consensus 146 --~~~~~v~~~------d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~-----~ 211 (414)
T 3ndn_A 146 --VQTVFVDGD------DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLL-----Q 211 (414)
T ss_dssp --CEEEEECTT------CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHH-----C
T ss_pred --cEEEEeCCC------CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCccccc-----C
Confidence 344444322 89999999864 78988754 78999999999999999999999999999986542 2
Q ss_pred CCCC-CccEEEeCCCCcCCC---CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHH
Q 012104 230 NPFE-YCHIVTTTTHKSLRG---PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (471)
Q Consensus 230 ~p~~-~aDiv~~s~~K~l~G---prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~ 305 (471)
.|+. ++|+++.|+||++.| +++|+++++++ .+.+.+...... .|+......++ .+++.
T Consensus 212 ~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~--------------~~~~~l~~~~~~--~g~~~~~~~a~--~~~~~ 273 (414)
T 3ndn_A 212 QGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDRE--------------YIDGPVQKLMRH--TGPAMSAFNAW--VLLKG 273 (414)
T ss_dssp CCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHH--------------HHTTHHHHHHHH--HCCCCCHHHHH--HHHHH
T ss_pred CchhcCCCeEeccCCccccCCCCceEEEEEECHH--------------HHHHHHHHHHHH--cCCCCCHHHHH--HHHHH
Confidence 3455 689999999999865 56899998763 222233211000 01111111122 22332
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHcC-CceEe-eCCC---------------CCeeEEEEccCC----CCCHHHHHHHH
Q 012104 306 ASTPAFKAYAKQVKANAVALGNYLTGK-GYSLV-TGGT---------------ENHLVLWDLRPL----GLTGNKVEKLC 364 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~na~~l~~~L~~~-g~~i~-~~~~---------------~~~~~~v~~~~~----~~~~~~~~~~L 364 (471)
+ ..+....++..+|++.+.+.|++. ++..+ .++- ...++++.+... ......+.+.|
T Consensus 274 l--~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l 351 (414)
T 3ndn_A 274 L--ETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKM 351 (414)
T ss_dssp G--GGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhC
Confidence 2 245667778889999999999876 44322 2211 234678887531 11234455666
Q ss_pred hhcCeEeccCCcCC------CC------------CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 365 DLCNITVNKNAVFG------DS------------SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 365 ~~~gI~v~~~~~p~------~~------------~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
+..++.++.+.... .. ....++.|||++. .++.+.+.+.|.+++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG--------~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVG--------LEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECC--------SSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeC--------cCCHHHHHHHHHHhh
Confidence 66677776654211 00 0123568999873 245666666666554
No 188
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.86 E-value=9.8e-21 Score=191.87 Aligned_cols=288 Identities=15% Similarity=0.121 Sum_probs=183.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccc
Q 012104 73 EFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (471)
Q Consensus 73 ~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~ 152 (471)
...+.+| +++++++|.+. .|.++||++|+.+++. +++|||+|++.++.|+++... + . ..+...|
T Consensus 67 p~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~-~-~---~~~~~~G- 130 (403)
T 3cog_A 67 PTRNCLE----KAVAALDGAKY-----CLAFASGLAATVTITH-LLKAGDQIICMDDVYGGTNRY-F-R---QVASEFG- 130 (403)
T ss_dssp HHHHHHH----HHHHHHHTCSE-----EEEESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHH-H-H---HTGGGGT-
T ss_pred chHHHHH----HHHHHHhCCCc-----EEEECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHH-H-H---HHHHHcC-
Confidence 4444554 67888999863 4667899999999999 999999999999999875321 0 0 0011233
Q ss_pred eeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhC-CEEEEeccccchhhccccCC
Q 012104 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCG-ALLLCDMAHISGLVAAQEAA 229 (471)
Q Consensus 153 ~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g-~~livD~a~~~glv~~g~~~ 229 (471)
.+++.++.+ |++++++.+++ ++++|++. +||+|...|+++|+++|+++| +++++|++|..+.. .
T Consensus 131 -~~v~~v~~~------d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~-----~ 197 (403)
T 3cog_A 131 -LKISFVDCS------KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYF-----Q 197 (403)
T ss_dssp -CEEEEECTT------SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTT-----C
T ss_pred -CEEEEECCC------CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccccc-----C
Confidence 344444322 89999998864 78888754 789999999999999999999 99999999985431 2
Q ss_pred CCCC-CccEEEeCCCCcCCCCC---eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHH
Q 012104 230 NPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (471)
Q Consensus 230 ~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~ 305 (471)
.|+. ++|+++.|+||++.||. +|+++++++ ++.+++.....++. ++++.....+...+++
T Consensus 198 ~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~--------------~l~~~l~~~~~~~g-~~~~~~~~~~~~~~l~- 261 (403)
T 3cog_A 198 RPLALGADISMYSATKYMNGHSDVVMGLVSVNCE--------------SLHNRLRFLQNSLG-AVPSPIDCYLCNRGLK- 261 (403)
T ss_dssp CTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCH--------------HHHHHHHHHHHHHC-CCCCHHHHHHHHHHHT-
T ss_pred CccccCCeEEEEcChhhccCCCCCeEEEEEECcH--------------HHHHHHHHHHHhcC-CCCCHHHHHHHHhhhh-
Confidence 3444 68999999999988774 699998653 45555543222111 1222222222222332
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHcCC---------------ceEeeCC--CCCeeEEEEccCCCCCHHHHHHHHhhcC
Q 012104 306 ASTPAFKAYAKQVKANAVALGNYLTGKG---------------YSLVTGG--TENHLVLWDLRPLGLTGNKVEKLCDLCN 368 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~na~~l~~~L~~~g---------------~~i~~~~--~~~~~~~v~~~~~~~~~~~~~~~L~~~g 368 (471)
.+....++..+|+..+.+.|++.. +.+.... ....++.+.+.. ...++.+.|++.|
T Consensus 262 ----~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~---~~~~~~~~l~~~~ 334 (403)
T 3cog_A 262 ----TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKG---TLQHAEIFLKNLK 334 (403)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS---CHHHHHHHHHHCS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecC---CHHHHHHHHHhCC
Confidence 234456667778888888887652 2111100 013345556542 2356788888889
Q ss_pred eEecc---CC------cCCCCC------------CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHH
Q 012104 369 ITVNK---NA------VFGDSS------------ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAV 416 (471)
Q Consensus 369 I~v~~---~~------~p~~~~------------~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l 416 (471)
|.+.. +. .|.... ...++.+||++... ..+++++.+.++|.+++
T Consensus 335 i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e----~~~d~i~~l~~al~~~~ 399 (403)
T 3cog_A 335 LFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLE----DEEDLLEDLDQALKAAH 399 (403)
T ss_dssp SSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHHC
T ss_pred cceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCC----CHHHHHHHHHHHHHHhh
Confidence 85432 21 222110 11257899998653 34778888877776654
No 189
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.86 E-value=8e-21 Score=191.48 Aligned_cols=325 Identities=15% Similarity=0.138 Sum_probs=196.8
Q ss_pred cCCeeEecCC----C---CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc---C---CCCCCC
Q 012104 31 CRGIELIASE----N---FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF---H---LDPTQW 97 (471)
Q Consensus 31 ~~~i~li~s~----n---~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf---g---~~~~~~ 97 (471)
.+.|+|..+. + ..+|.+.+++...+.+....+|.. ......++ +.+++++ + ++.+.
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~lr----~~la~~~~~~~~~~~~~~~- 94 (396)
T 2q7w_A 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLG------IDGIPEFG----RCTQELLFGKGSALINDKR- 94 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCC------TTCCHHHH----HHHHHHHHCTTCHHHHTTC-
T ss_pred CCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCC------CCCCHHHH----HHHHHHHhcCCCCcccccc-
Confidence 3568887665 1 346899999877664322223311 11122333 3344444 2 12221
Q ss_pred ceee-ecCChHHHHHHHHHHh--cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHH
Q 012104 98 GVNV-QPYSGSPANFAAYTAV--LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKL 173 (471)
Q Consensus 98 ~~~v-~~~sGt~A~~~~~~al--l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~l 173 (471)
+.+ +++||++|+.+++.++ +.|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|++++
T Consensus 95 -v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~d~~~l 162 (396)
T 2q7w_A 95 -ARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKS---------VFNSAGL--EVREYAYYDAENHTLDFDAL 162 (396)
T ss_dssp -EEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHH---------HHHHTTC--EEEEEECEETTTTEECHHHH
T ss_pred -EEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHH---------HHHHcCC--ceEEEecccCCCCCcCHHHH
Confidence 322 2677788999988765 5799999999999887642 1223343 444555432 4578999999
Q ss_pred HHHhhhCC--CcEEEE-c-CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccc--cCC--CCCC---CccEEE
Q 012104 174 EEKALDFR--PKLIIC-G-GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQ--EAA--NPFE---YCHIVT 239 (471)
Q Consensus 174 e~~~~~~~--pklIi~-~-~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g--~~~--~p~~---~aDiv~ 239 (471)
++.+.+.+ ++++++ + +||+|..++. ++|+++|+++|++|++|++|. ++...+ ... ..+. ..++++
T Consensus 163 ~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (396)
T 2q7w_A 163 INSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQ-GFARGLEEDAEGLRAFAAMHKELIVA 241 (396)
T ss_dssp HHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TSSSCHHHHTHHHHHHHHHCSCEEEE
T ss_pred HHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccc-cccCCccchhHHHHHHHhcCCcEEEE
Confidence 99987543 455654 3 7889988765 467889999999999999987 444432 111 1111 134889
Q ss_pred eCCCCcC--CCCCeEEEEe--eCC-CCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHh-----ccH
Q 012104 240 TTTHKSL--RGPRAGMIFY--RKG-PKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQA-----STP 309 (471)
Q Consensus 240 ~s~~K~l--~GprgG~i~~--~~~-~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~-----~~~ 309 (471)
+|+||++ +|.|.|++++ +++ . +. .+.+.+....... .++++....++...+++.. ...
T Consensus 242 ~s~sK~~~~~G~riG~~~~~~~~~~~---------~~--~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~~~l~~~~~~ 309 (396)
T 2q7w_A 242 SSYSXNFGLYNERVGACTLVAADSET---------VD--RAFSQMKAAIRAN-YSNPPAHGASVVATILSNDALRAIWEQ 309 (396)
T ss_dssp EECTTTTTCGGGCCEEEEEECSSHHH---------HH--HHHHHHHHHHHTT-TSSCCHHHHHHHHHHHTSHHHHHHHHH
T ss_pred EeccccccccccccceEEEEcCCHHH---------HH--HHHHHHHHHHhhc-cCCCCcHHHHHHHHHhcChhhHHHHHH
Confidence 9999995 5778899986 321 0 00 1333333211111 2233444444444444321 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCC
Q 012104 310 AFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 310 ~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~ 385 (471)
++++..+++.++++.+.+.|++.| +++.. +..+.++|+++ +...+.+.|+++||.+.+
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gv~v~~------------ 371 (396)
T 2q7w_A 310 ELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFSGL-----TKEQVLRLREEFGVYAVA------------ 371 (396)
T ss_dssp HHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEECCC-----CHHHHHHHHHHHCEECCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEecC-----CHHHHHHHHHhcCeeecC------------
Confidence 456667777888899999998876 66543 23355566644 346678888899999853
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
++||+++.. ++++++++.+.|.++
T Consensus 372 -~~Ris~~~~-----~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 -SGRVNVAGM-----TPDNMAPLCEAIVAV 395 (396)
T ss_dssp -TCEEEGGGC-----CTTTHHHHHHHHHHH
T ss_pred -CceEEEeec-----CHHHHHHHHHHHHhc
Confidence 379998532 367898888888765
No 190
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.86 E-value=1.6e-20 Score=193.79 Aligned_cols=333 Identities=13% Similarity=0.107 Sum_probs=195.1
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCC----
Q 012104 45 FAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP---- 120 (471)
Q Consensus 45 ~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~p---- 120 (471)
+.|++++...+... ...|+......+++ +++++++|.+. .+.++||++|+.+++.++++|
T Consensus 53 ~~v~~a~~~~l~~~-------~~~y~~~~~~~~l~----~~la~~~~~~~-----v~~t~~gt~A~~~al~~~~~~~~~~ 116 (467)
T 2oqx_A 53 GAVTQSMQAAMMRG-------DEAYSGSRSYYALA----ESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_dssp SCCCHHHHHHTTSC-------CCCSSSCHHHHHHH----HHHHHHHCCSE-----EEEEC--CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-------cceeccCchhHHHH----HHHHHHhCcCc-----EEEcCCcHHHHHHHHHHHhcccccc
Confidence 77777776665321 11233334444444 56788888753 355778999999999999888
Q ss_pred -C----CEEEEeCCCCCCc-ccccccccCCccceeccceeEEEeeeec---CCCCCCCHHHHHHHhhh---CCCcEEEEc
Q 012104 121 -H----DRIMGLDLPSGGH-LTHGYYTSGGKKISATSIYFESLPYKVN---SSTGYIDYDKLEEKALD---FRPKLIICG 188 (471)
Q Consensus 121 -G----D~Vl~~~~~~~g~-~s~~~~~~~g~~~~~~g~~~~~~~~~v~---~~~~~iD~~~le~~~~~---~~pklIi~~ 188 (471)
| |+|++. ..|+.. ..+.. ..|.. ...+. ....++.+ +.++.+|+++|++++.+ .++++|++.
T Consensus 117 ~G~~~~d~Ii~~-~~h~~t~~~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~ 190 (467)
T 2oqx_A 117 KGLDRSKMVAFS-NYFFDTTQGHSQ--INGCT-VRNVY--IKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190 (467)
T ss_dssp HCCCTTTCEEEE-SSCCHHHHHHHH--HTTCE-EEECB--CTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEE
T ss_pred CCCCccceEEec-ccccccchhhhh--ccCcc-eeecc--ccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEe
Confidence 9 997765 344210 00000 00000 01110 00011111 13467999999999975 367877754
Q ss_pred --CCCC-Ccccc---HHHHHHHHHHhCCEEEEeccccc-hhh--------ccccCCCCC-----CCccEEEeCCCCcCCC
Q 012104 189 --GSAY-PRDWD---YARFRAVADKCGALLLCDMAHIS-GLV--------AAQEAANPF-----EYCHIVTTTTHKSLRG 248 (471)
Q Consensus 189 --~s~~-g~~~d---~~~i~~ia~~~g~~livD~a~~~-glv--------~~g~~~~p~-----~~aDiv~~s~~K~l~G 248 (471)
+|++ |.+.+ +++|+++|+++|++||+|++|.. +.. ..|.....+ .++|++++|+||++..
T Consensus 191 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~ 270 (467)
T 2oqx_A 191 ITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMV 270 (467)
T ss_dssp SSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCC
T ss_pred ccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCC
Confidence 4565 66554 67889999999999999998875 332 222211111 2478889999999876
Q ss_pred CCeEEEEeeCC-CCCCCCCCCCCcccchHhhhhhcC--CCCC--CCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 012104 249 PRAGMIFYRKG-PKPPKKGQPEGAVYDFEDKINFAV--FPSL--QGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323 (471)
Q Consensus 249 prgG~i~~~~~-~~~~~~~~~~i~~~~l~~~i~~~~--~~~~--~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~ 323 (471)
|.||+++++++ +. ++..++.... ..+. .++.....+++++.++..... ++..++..++++
T Consensus 271 ~~Gg~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~ 335 (467)
T 2oqx_A 271 PMGGLLCMKDDSFF------------DVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQ 335 (467)
T ss_dssp SSCEEEEECSGGGH------------HHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred CCceEEEecChhHH------------HHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHH
Confidence 76888888762 10 1222332211 1111 122233333344444333322 134455677888
Q ss_pred HHHHHHHcCCceEeeCCCCCeeEEEEccC--CCCC-----HHHHHHHH-hhcCeEeccCCc--CCC------CCCCCCCe
Q 012104 324 ALGNYLTGKGYSLVTGGTENHLVLWDLRP--LGLT-----GNKVEKLC-DLCNITVNKNAV--FGD------SSALAPGG 387 (471)
Q Consensus 324 ~l~~~L~~~g~~i~~~~~~~~~~~v~~~~--~~~~-----~~~~~~~L-~~~gI~v~~~~~--p~~------~~~~~~~~ 387 (471)
++.+.|++.|++++ +...+++|+++.. .+++ ...+.+.| .++||.+.++.. .+. ..+...+.
T Consensus 336 ~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~ 413 (467)
T 2oqx_A 336 YLVDGLEEIGVVCQ--QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAEL 413 (467)
T ss_dssp HHHHHHHHTTCCEE--EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred HHHHHHHHCCCeee--cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCe
Confidence 99999988888775 3456678888742 2333 34456666 899999987431 111 01112378
Q ss_pred eEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 388 VRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 388 iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+||+++..+ .++++++++.+.|.++++..
T Consensus 414 iRl~~~~~~---~t~e~i~~~~~~l~~~l~~~ 442 (467)
T 2oqx_A 414 LRLTIPRAT---YTQTHMDFIIEAFKHVKENA 442 (467)
T ss_dssp EEECCCTTT---SCHHHHHHHHHHHHHHHHSG
T ss_pred EEEEecCCC---CCHHHHHHHHHHHHHHHhhh
Confidence 999985430 34899999999999887653
No 191
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.86 E-value=2.2e-19 Score=183.22 Aligned_cols=324 Identities=14% Similarity=0.038 Sum_probs=199.9
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc---C
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL---E 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all---~ 119 (471)
.+|.|++++...+..... ++..+|. .+. .+++ +++++++++++.+ -.+.++||++|+.+++.++. +
T Consensus 60 ~~p~v~~a~~~~~~~~~~--~~~~~~~--~~~---~~~l-~~~la~~~~~~~~---~v~~~~ggtea~~~ai~~~~~~~~ 128 (429)
T 1s0a_A 60 NHPQLNAAMKSQIDAMSH--VMFGGIT--HAP---AIEL-CRKLVAMTPQPLE---CVFLADSGSVAVEVAMKMALQYWQ 128 (429)
T ss_dssp SCHHHHHHHHHHHHHCSC--CCCSSEE--CHH---HHHH-HHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--ccccccC--CHH---HHHH-HHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHhc
Confidence 479999999887754321 1111111 122 2223 3568888986553 23557788999999988653 3
Q ss_pred ----CCCEEEEeCCCCCCcccccccccCCcc--c--eec--cceeEEEeeeec---CCCCCCCHHHHHHHhhh--CCCcE
Q 012104 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKK--I--SAT--SIYFESLPYKVN---SSTGYIDYDKLEEKALD--FRPKL 184 (471)
Q Consensus 120 ----pGD~Vl~~~~~~~g~~s~~~~~~~g~~--~--~~~--g~~~~~~~~~v~---~~~~~iD~~~le~~~~~--~~pkl 184 (471)
|||+|++.++.|.+...... ...|.. . ... ......++++.. ...+.+|+++|++++++ .++++
T Consensus 129 ~~g~~~~~vi~~~~~yh~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~ 207 (429)
T 1s0a_A 129 AKGEARQRFLTFRNGYHGDTFGAM-SVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAA 207 (429)
T ss_dssp HHTCCCCEEEEETTCCCCSSHHHH-TTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEE
T ss_pred ccCCCCCeEEEECCCCCCCchhhh-hhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEE
Confidence 79999999988865421000 000000 0 000 001233333211 01236899999999874 35678
Q ss_pred EEEcC---CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccC-C-CCCC-CccEEEeCCCCcCCC--CCeE
Q 012104 185 IICGG---SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEA-A-NPFE-YCHIVTTTTHKSLRG--PRAG 252 (471)
Q Consensus 185 Ii~~~---s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~-~-~p~~-~aDiv~~s~~K~l~G--prgG 252 (471)
|++++ |++|...+ +++|+++|+++|++||+|++|. |+...|.. . ..+. ..|+++ ++|+|.| .|.|
T Consensus 208 vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~l~~G~~~iG 284 (429)
T 1s0a_A 208 VIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-GFGRTGKLFACEHAEIAPDILC--LGKALTGGTMTLS 284 (429)
T ss_dssp EEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGGTSSSCCE
T ss_pred EEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-CCcccchHHHhhhcCCCCCEEE--ecccccCCCccce
Confidence 88874 46887777 8999999999999999999996 54322221 1 1112 457775 5599876 5789
Q ss_pred EEEeeCCCCCCCCCCCCCcccchHhhhhhcC-----CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 012104 253 MIFYRKGPKPPKKGQPEGAVYDFEDKINFAV-----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGN 327 (471)
Q Consensus 253 ~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~-----~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~ 327 (471)
++++++ ++.+.+.... ..+.. +++...+++..++++.+.+ .++.+++.++.++|.+
T Consensus 285 ~~~~~~---------------~~~~~l~~~~~~~~~~~~t~-~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~ 345 (429)
T 1s0a_A 285 ATLTTR---------------EVAETISNGEAGCFMHGPTF-MGNPLACAAANASLAILES---GDWQQQVADIEVQLRE 345 (429)
T ss_dssp EEEECH---------------HHHHHHHTSTTSSCSCCCTT-TTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHH
T ss_pred EEEeCH---------------HHHHHhhcCCCcccccCCCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHH
Confidence 999876 4555554320 11112 2344445555566765433 2455677778888999
Q ss_pred HHHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHH
Q 012104 328 YLTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEK 403 (471)
Q Consensus 328 ~L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~ 403 (471)
.|++. ++..+.+ . ..++++++.. +.+..++.+.|.++||.+.+. .+.+||+++..+ +++
T Consensus 346 ~L~~l~~~~~~~~~~~-~-g~~~~~~~~~-~~~~~~l~~~l~~~Gi~v~~~----------~~~iRis~~~~~----t~e 408 (429)
T 1s0a_A 346 QLAPARDAEMVADVRV-L-GAIGVVETTH-PVNMAALQKFFVEQGVWIRPF----------GKLIYLMPPYII----LPQ 408 (429)
T ss_dssp HHGGGGGCTTEEEEEE-E-TTEEEEEESS-CBCHHHHHHHHHHTTEECCCB----------TTEEEECCCTTC----CHH
T ss_pred HHHHHhcCCCEEEEEE-e-eEEEEEEECC-cccHHHHHHHHHHCCCEEecc----------CCEEEEECCCCC----CHH
Confidence 88774 3332222 2 3367788753 356778888888899999652 268999976554 489
Q ss_pred HHHHHHHHHHHHHH
Q 012104 404 DFEQIGEFLHRAVT 417 (471)
Q Consensus 404 d~~~l~~~i~~~l~ 417 (471)
|++++.+.|.++++
T Consensus 409 ~i~~~~~~l~~~~~ 422 (429)
T 1s0a_A 409 QLQRLTAAVNRAVQ 422 (429)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 192
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.86 E-value=6e-20 Score=185.66 Aligned_cols=320 Identities=16% Similarity=0.109 Sum_probs=200.7
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.+.+++...+..... + +.+ | ..+...++ ++++++++|.+. .+.++||++|+.+++.+++.
T Consensus 56 ~~p~v~~a~~~~~~~~~~--~-~~~-~-~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~~a~~~al~~~~~~~~ 121 (406)
T 4adb_A 56 AHPELREALNEQASKFWH--T-GNG-Y-TNEPVLRL----AKKLIDATFADR-----VFFCNSGAEANEAALKLARKFAH 121 (406)
T ss_dssp TCHHHHHHHHHHHTTCSC--C-CTT-S-CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccc--c-cCC-c-CCHHHHHH----HHHHHhhCCCCe-----EEEeCcHHHHHHHHHHHHHHHHH
Confidence 378999999887754321 1 111 2 22333333 467888998763 45678899999999998865
Q ss_pred ----CC-CEEEEeCCCCCCcccccccccCCccce---eccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc-CC
Q 012104 120 ----PH-DRIMGLDLPSGGHLTHGYYTSGGKKIS---ATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG-GS 190 (471)
Q Consensus 120 ----pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~---~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~-~s 190 (471)
+| |+|++.++.|.++..... ...+.... +......+..+ ...|+++|++++. .++++|++. .+
T Consensus 122 ~~~~~g~~~vi~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~l~~~l~-~~~~~v~~~p~n 193 (406)
T 4adb_A 122 DRYGSHKSGIVAFKNAFHGRTLFTV-SAGGQPAYSQDFAPLPADIRHA------AYNDINSASALID-DSTCAVIVEPIQ 193 (406)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHHHH-HHSSCGGGTGGGCSCCSSEEEE------CTTCHHHHHTTCS-TTEEEEEECSEE
T ss_pred hcCCCCCcEEEEECCCcCCCcHHHh-hccCCccccccCCCCCCCceEe------CCCcHHHHHHHhc-CCeEEEEEeCCc
Confidence 66 999999999876532110 00000000 00000011111 1258999999886 578888876 56
Q ss_pred CCCccc-----cHHHHHHHHHHhCCEEEEeccccchhhccccCCC--CCC-CccEEEeCCCCcCC-CCCeEEEEeeCCCC
Q 012104 191 AYPRDW-----DYARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PFE-YCHIVTTTTHKSLR-GPRAGMIFYRKGPK 261 (471)
Q Consensus 191 ~~g~~~-----d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~--p~~-~aDiv~~s~~K~l~-GprgG~i~~~~~~~ 261 (471)
++|..+ ++++|+++|+++|++||+|++|. |+...|.... .+. ..|+++ +||++. |.|+|++++++
T Consensus 194 p~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r~G~~~~~~--- 267 (406)
T 4adb_A 194 GEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLLT--TAKALGGGFPVGALLATE--- 267 (406)
T ss_dssp TTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEEEECH---
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEEE--echhhcCCCCeEEEEEcH---
Confidence 677554 67899999999999999999997 6644333210 111 357774 589974 55889998887
Q ss_pred CCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcCC--ceEeeC
Q 012104 262 PPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG--YSLVTG 339 (471)
Q Consensus 262 ~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~g--~~i~~~ 339 (471)
++.+.+......+..+ ++....++...+++.+.. +++.+++.++++++.+.|++.+ +.+...
T Consensus 268 ------------~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 331 (406)
T 4adb_A 268 ------------ECARVMTVGTHGTTYG-GNPLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSE 331 (406)
T ss_dssp ------------HHHHTCCTTSSCCSST-TCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred ------------HHHhhhccCCcCCCCC-CCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 5555554432222222 334444455556665543 4667777888888888887652 111111
Q ss_pred -CCCCeeEEEEccCC-CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 340 -GTENHLVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 340 -~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
.....++++.+... ..+..++.+.|.+.||.+.++ ..+.+||+++..+ ++++++++.+.|.++++
T Consensus 332 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---------~~~~iRi~~~~~~----~~e~i~~~~~~l~~~l~ 398 (406)
T 4adb_A 332 VRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA---------GGNVVRFAPALNV----SEEEVTTGLDRFAAACE 398 (406)
T ss_dssp EEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES---------STTEEEECCCTTC----CHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec---------CCCeEEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence 11234667776532 125778888888889999763 1478999765443 48999999999998886
Q ss_pred HH
Q 012104 418 LT 419 (471)
Q Consensus 418 ~~ 419 (471)
..
T Consensus 399 ~~ 400 (406)
T 4adb_A 399 HF 400 (406)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 193
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.85 E-value=4.8e-20 Score=186.06 Aligned_cols=308 Identities=15% Similarity=0.117 Sum_probs=195.8
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.+++++...+.+. .. .+ +.| ..+....+ ++++++++|.+. .+.++||++|+.+++.++..
T Consensus 57 ~~~~v~~a~~~~~~~~-~~--~~-~~~-~~~~~~~l----~~~la~~~g~~~-----v~~~~gg~~a~~~al~~~~~~~~ 122 (397)
T 2ord_A 57 SHPRLVEAIKDQAEKL-IH--CS-NLF-WNRPQMEL----AELLSKNTFGGK-----VFFANTGTEANEAAIKIARKYGK 122 (397)
T ss_dssp TCHHHHHHHHHHHHHC-SC--CC-TTS-EEHHHHHH----HHHHHHTTTSCE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cc--Cc-ccc-CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799999998877542 21 11 122 22333333 367888888542 35678899999999988763
Q ss_pred ---C-CCEEEEeCCCCCCcccccccccCCccceeccce-----e-----EEEeeeecCCCCCCCHHHHHHHhhhCCCcEE
Q 012104 120 ---P-HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----F-----ESLPYKVNSSTGYIDYDKLEEKALDFRPKLI 185 (471)
Q Consensus 120 ---p-GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~-----~-----~~~~~~v~~~~~~iD~~~le~~~~~~~pklI 185 (471)
| +|.|++.++.|.+.... .+...|.. + .++.++ ..|+++|++.+. .++++|
T Consensus 123 ~~~~~~~~vi~~~~~yh~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~l~~~l~-~~~~~v 187 (397)
T 2ord_A 123 KKSEKKYRILSAHNSFHGRTLG--------SLTATGQPKYQKPFEPLVPGFEYFE------FNNVEDLRRKMS-EDVCAV 187 (397)
T ss_dssp HHCTTCCEEEEEBTCCCCSSHH--------HHHHSBCHHHHGGGCSCCTTEEEEC------TTCHHHHHHHCC-TTEEEE
T ss_pred cCCCCCceEEEEcCCcCCCchh--------hhhccCChhhccccCCCCCCeeEec------CCCHHHHHHHhh-cCeEEE
Confidence 5 47899998887553210 11122211 0 022222 248999999886 478888
Q ss_pred EEc--CCCCCc-c---ccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-CccEEEeCCCCcCC-CCCeEEE
Q 012104 186 ICG--GSAYPR-D---WDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGMI 254 (471)
Q Consensus 186 i~~--~s~~g~-~---~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~aDiv~~s~~K~l~-GprgG~i 254 (471)
++. +||+|. . .++++|+++|+++|++|++|++|. |+...|.. .++ . .+|++ |++|++. |.|.|++
T Consensus 188 ~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~r~G~~ 263 (397)
T 2ord_A 188 FLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKL-FAYQKYGVVPDVL--TTAKGLGGGVPIGAV 263 (397)
T ss_dssp EECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-SHHHHHTCCCSEE--EECGGGGTTSCCEEE
T ss_pred EEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccc-hhhhhhCCCCCee--eeccccCCCcCeEEE
Confidence 865 678898 3 467889999999999999999996 76544431 111 2 36877 5579975 4578999
Q ss_pred EeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC--
Q 012104 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-- 332 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-- 332 (471)
+++++ +. .+......... +++...+++...+++.... ++..+++.++++++.+.|++.
T Consensus 264 ~~~~~---------------~~-~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 323 (397)
T 2ord_A 264 IVNER---------------AN-VLEPGDHGTTF-GGNPLACRAGVTVIKELTK---EGFLEEVEEKGNYLMKKLQEMKE 323 (397)
T ss_dssp EECST---------------TC-CCCTTSSCCSS-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchH---------------hc-ccCCCCcCCCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 88874 22 23221111112 2334444455556665543 356677778888888888765
Q ss_pred CceEee-CCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHH
Q 012104 333 GYSLVT-GGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEF 411 (471)
Q Consensus 333 g~~i~~-~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~ 411 (471)
++.++. ......++++++.. ..+..++.+.|.++||.+.++ .++.+||+++.. .++++++++.+.
T Consensus 324 ~~~~~~~~~~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~---------~~~~iRis~~~~----~~~e~i~~~~~~ 389 (397)
T 2ord_A 324 EYDVVADVRGMGLMIGIQFRE-EVSNREVATKCFENKLLVVPA---------GNNTIRFLPPLT----VEYGEIDLAVET 389 (397)
T ss_dssp HCTTEEEEEEETTEEEEEECT-TSCHHHHHHHHHHTTEECEEE---------TTTEEEECCCTT----CCHHHHHHHHHH
T ss_pred hCCceEEEEEEeEEEEEEECC-hHHHHHHHHHHHHCCCEEccC---------CCCEEEEECCcC----CCHHHHHHHHHH
Confidence 343211 01123466777753 346778888888899999764 146899997543 348999999999
Q ss_pred HHHHHH
Q 012104 412 LHRAVT 417 (471)
Q Consensus 412 i~~~l~ 417 (471)
|.++++
T Consensus 390 l~~~l~ 395 (397)
T 2ord_A 390 LKKVLQ 395 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
No 194
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=1.2e-19 Score=182.77 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=182.6
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++.+++++|.+. .|.++||++|+..++.++++|||+|++.++.|++.... + . ......| .+++.++.
T Consensus 58 ~~~la~~~~~~~-----~i~~~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~-~-~---~~~~~~g--~~~~~~~~- 124 (386)
T 1cs1_A 58 QRALAELEGGAG-----AVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRL-F-D---SLAKRGC--YRVLFVDQ- 124 (386)
T ss_dssp HHHHHHHHTCSE-----EEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH-H-H---HHHTTTS--CEEEEECT-
T ss_pred HHHHHHHhCCCc-----EEEeCCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHH-H-H---HHHHhcC--CEEEEeCC-
Confidence 467888999862 45668999999999999999999999999988763210 0 0 0001223 34444432
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEE
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVT 239 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~ 239 (471)
.|++++++.+.+ ++++|++. +|++|...|+++|+++|+++|+++++|++|..+.. ..++. ++|+++
T Consensus 125 -----~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~-----~~~~~~~~di~~ 193 (386)
T 1cs1_A 125 -----GDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-----QNPLALGADLVL 193 (386)
T ss_dssp -----TCHHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-----CCGGGGTCSEEE
T ss_pred -----CCHHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCccccCceEEE
Confidence 389999999874 78888754 67899999999999999999999999999974432 12334 689999
Q ss_pred eCCCCcCCCCC---eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHH
Q 012104 240 TTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAK 316 (471)
Q Consensus 240 ~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~ 316 (471)
+|+||++.||. +|+++++++ ++.+.+....... .++++....++...+++ .+....+
T Consensus 194 ~s~sK~~~~~~~~~~G~~~~~~~--------------~l~~~l~~~~~~~-~~~~~~~~~~~~~~~l~-----~~~~~~~ 253 (386)
T 1cs1_A 194 HSCTKYLNGHSDVVAGVVIAKDP--------------DVVTELAWWANNI-GVTGGAFDSYLLLRGLR-----TLVPRME 253 (386)
T ss_dssp EETTTTTTCSSCCCCEEEEESSH--------------HHHHHHHHHHHHH-TCBCCHHHHHHHHHHHT-----THHHHHH
T ss_pred EcCcccccCCCCceeEEEEeCcH--------------HHHHHHHHHHHhc-CCCCCHHHHHHHHhccc-----HHHHHHH
Confidence 99999986654 399988763 3444444322111 12223222222222222 2445566
Q ss_pred HHHHHHHHHHHHHHcCC-ceEe-eCC---------------CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCC----
Q 012104 317 QVKANAVALGNYLTGKG-YSLV-TGG---------------TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNA---- 375 (471)
Q Consensus 317 ~~~~na~~l~~~L~~~g-~~i~-~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~---- 375 (471)
+..++++.+.+.|++.+ +.-+ ... ....++.+.+.. ..+.+.+.|.+.||.+....
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~g~~ 330 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLFTLAESLGGV 330 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS---CHHHHHHHHHTCSSSEEBSCCCSS
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC---CHHHHHHHHHhCCcceEcccCCCc
Confidence 77888889999888763 3211 111 113455566542 25678889999999886421
Q ss_pred -----cCCC---C-C--------CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 376 -----VFGD---S-S--------ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 376 -----~p~~---~-~--------~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
.|.. . . ...++.+||+++.. .++++++++.++|.++
T Consensus 331 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~----~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 331 ESLISHAATMTHAGMAPEARAAAGISETLLRISTGIE----DGEDLIADLENGFRAA 383 (386)
T ss_dssp SCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccCCHHHHHhcCCCCCeEEEEEccC----CHHHHHHHHHHHHHHh
Confidence 1100 0 0 01247999998652 4578888888887664
No 195
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.85 E-value=9.7e-21 Score=190.81 Aligned_cols=322 Identities=14% Similarity=0.140 Sum_probs=196.8
Q ss_pred cCCeeEecCC----C---CCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc-CC--CCCCCcee
Q 012104 31 CRGIELIASE----N---FTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-HL--DPTQWGVN 100 (471)
Q Consensus 31 ~~~i~li~s~----n---~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf-g~--~~~~~~~~ 100 (471)
.+.|+|..+. + ..++.+.+++...+.+....+|+.. .....++ +.+++++ +. +.+. +.
T Consensus 26 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~------~g~~~lr----~~la~~~~~~~~~~~~--v~ 93 (394)
T 2ay1_A 26 QGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGL------SGEPEFQ----KAMGELILGDGLKSET--TA 93 (394)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCS------SCCHHHH----HHHHHHHHGGGCCGGG--EE
T ss_pred ccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCC------CCcHHHH----HHHHHHHhCCCCCccc--EE
Confidence 3568887665 2 3468999998776643212233221 1122333 3344443 43 3321 22
Q ss_pred e-ecCChHHHHHHHHHHhc--CCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecC-CCCCCCHHHHHHH
Q 012104 101 V-QPYSGSPANFAAYTAVL--EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNS-STGYIDYDKLEEK 176 (471)
Q Consensus 101 v-~~~sGt~A~~~~~~all--~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~-~~~~iD~~~le~~ 176 (471)
+ ++.||++|+.+++.++. .|||+|++.+|.|.++.. .+...|. +++.+++++ +++.+|++++++.
T Consensus 94 ~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~---------~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~ 162 (394)
T 2ay1_A 94 TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVS---------IMNFMGL--PVQTYRYFDAETRGVDFEGMKAD 162 (394)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHH---------HHHHHTC--CEEEEECEETTTTEECHHHHHHH
T ss_pred EEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHH---------HHHHcCC--ceEEEecccccCCccCHHHHHHH
Confidence 1 26677889999988774 499999999998876532 1223343 444455432 4578999999999
Q ss_pred hhhCC--CcEEEEc--CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccc--cC-C-CCCC--Cc-cEEEeCC
Q 012104 177 ALDFR--PKLIICG--GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQ--EA-A-NPFE--YC-HIVTTTT 242 (471)
Q Consensus 177 ~~~~~--pklIi~~--~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g--~~-~-~p~~--~a-Div~~s~ 242 (471)
+.+.+ ++++++. +||+|..++. ++|+++|+++|+++++|++|. ++...+ .. + ..+. +. .++++|+
T Consensus 163 l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 241 (394)
T 2ay1_A 163 LAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQ-GFGDGLEEDAAGTRLIASRIPEVLIAASC 241 (394)
T ss_dssp HHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCT-TSSSCHHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCcc-ccccCcccchHHHHHHhhcCCCEEEEEec
Confidence 87542 4555533 7889988865 467889999999999999997 443321 00 1 1121 22 3779999
Q ss_pred CCcC--CCCCeEEEEe--eCCCCCCCCCCCCCcccch----HhhhhhcCCCCCCCCCcHHHHHHHHHHHHHh-----ccH
Q 012104 243 HKSL--RGPRAGMIFY--RKGPKPPKKGQPEGAVYDF----EDKINFAVFPSLQGGPHNHQIGALAVALKQA-----STP 309 (471)
Q Consensus 243 ~K~l--~GprgG~i~~--~~~~~~~~~~~~~i~~~~l----~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~-----~~~ 309 (471)
||++ +|.|.|++++ +++ ++ .+.+........ ++++....++...+++.. ...
T Consensus 242 sK~~~~~G~riG~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~l~~~~~~ 306 (394)
T 2ay1_A 242 SKNFGIYRERTGCLLALCADA--------------ATRELAQGAMAFLNRQTY-SFPPFHGAKIVSTVLTTPELRADWMA 306 (394)
T ss_dssp TTTTTCGGGCEEEEEEECSSH--------------HHHHHHHHHHHHHHHTTT-SSCCCHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCCCcCcCCccceEEEEeCCH--------------HHHHHHHHHHHHHHhhhc-CCCChHHHHHHHHHhcChHHHHHHHH
Confidence 9996 5778899987 321 22 222221111122 222333334444445432 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCC
Q 012104 310 AFKAYAKQVKANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 310 ~~~~~~~~~~~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~ 385 (471)
+.++..+++.++++.+.+.|++.| +++.. +..+.++|+++ +.+.+.+.|+++||.+.+
T Consensus 307 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~~l~~~gi~v~~------------ 368 (394)
T 2ay1_A 307 ELEAVRSGMLRLREQLAGELRDLSGSDRFGFVA-EHRGMFSRLGA-----TPEQVKRIKEEFGIYMVG------------ 368 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHH-HCCSSEEECCC-----CHHHHHHHHHHHCEECCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEc-CCceEEEeeCC-----CHHHHHHHHHhCCEEecC------------
Confidence 456677778888888988888764 66543 23345567654 346678889999999853
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
++||+++. .++++++++.+.|.++
T Consensus 369 -~~Ris~~~-----~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 369 -DSRINIAG-----LNDNTIPILARAIIEV 392 (394)
T ss_dssp -TCEEEGGG-----CCTTTHHHHHHHHHHH
T ss_pred -CCeEEeec-----CCHhhHHHHHHHHHHc
Confidence 37999752 3468899998888764
No 196
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.85 E-value=1.3e-19 Score=184.57 Aligned_cols=322 Identities=14% Similarity=0.006 Sum_probs=196.5
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHH---HhcC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYT---AVLE 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~---all~ 119 (471)
.+|.|++++...+... . .....|+ ..+...++ ++.++++++.+..+ -.+.++||++|+.+++. ++++
T Consensus 58 ~~~~v~~a~~~~~~~~-~--~~~~~~~-~~~~~~~l----~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~~ 127 (426)
T 1sff_A 58 LHPKVVAAVEAQLKKL-S--HTCFQVL-AYEPYLEL----CEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAATK 127 (426)
T ss_dssp TCHHHHHHHHHHTTTC-S--CCCTTTE-ECHHHHHH----HHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC-C--Ccccccc-CCHHHHHH----HHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhhC
Confidence 5789999998776432 1 1111122 22333333 46678888322211 23557788899999988 6778
Q ss_pred CCCEEEEeCCCCCCcccccccccCCccceeccc-------------eeEEEeeeecC--CCCCCCHHHHHHHhhh----C
Q 012104 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI-------------YFESLPYKVNS--STGYIDYDKLEEKALD----F 180 (471)
Q Consensus 120 pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~-------------~~~~~~~~v~~--~~~~iD~~~le~~~~~----~ 180 (471)
+| +|++.+|.|.+..... +...|. .+..++++.+. .++.+|+++|++.+++ .
T Consensus 128 ~~-~vi~~~p~y~~~~~~~--------~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 198 (426)
T 1sff_A 128 RS-GTIAFSGAYHGRTHYT--------LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPE 198 (426)
T ss_dssp CC-EEEEETTCCCCSSHHH--------HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGG
T ss_pred CC-eEEEECCCcCCCchHh--------hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCC
Confidence 87 8999999886543110 111111 12223332110 1234799999998864 4
Q ss_pred CCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCC
Q 012104 181 RPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPR 250 (471)
Q Consensus 181 ~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-Gpr 250 (471)
++++|++. ++++|...+ +++|+++|+++|++||+|++|. |+...|... .... .+|++ |+||++. |.|
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~~~Glr 275 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSIAGGFP 275 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGGGTSSC
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccccCCCc
Confidence 67888875 344786667 8899999999999999999998 765444211 1112 35666 6679964 456
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLT 330 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~ 330 (471)
.|++++++ ++.+.+......... +++...+++...+++.+.. .++.+++.++.+.+.+.|+
T Consensus 276 iG~~~~~~---------------~~~~~l~~~~~~~~~-~~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~ 336 (426)
T 1sff_A 276 LAGVTGRA---------------EVMDAVAPGGLGGTY-AGNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLL 336 (426)
T ss_dssp CEEEEEEH---------------HHHTTSCTTSBCCSS-SSCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcH---------------HHHhhhccCCcCcCC-CCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 79999987 444444322111222 2334444455556665432 2455667777788888776
Q ss_pred cCC--ce---EeeCCCCCeeEEEEccC-------CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCc
Q 012104 331 GKG--YS---LVTGGTENHLVLWDLRP-------LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSR 398 (471)
Q Consensus 331 ~~g--~~---i~~~~~~~~~~~v~~~~-------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~ 398 (471)
+.+ +. .+. +. +.++|+++.. .+.+..++.+.|.++||.+.++.. ..+.+||+++..+
T Consensus 337 ~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-------~~~~iRi~~~~~~-- 405 (426)
T 1sff_A 337 AIAEKHPEIGDVR-GL-GAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP-------YYNVLRILVPLTI-- 405 (426)
T ss_dssp HHHHTCTTEEEEE-EE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEEST-------TSCEEEECCCTTC--
T ss_pred HHHHhCCCeEEEE-EE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCC-------CCCEEEEECCccC--
Confidence 532 22 222 22 4577888742 123456677778788999987532 1478999875433
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 012104 399 GLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 399 g~~~~d~~~l~~~i~~~l~~ 418 (471)
++++++++.+.|.++++.
T Consensus 406 --~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 406 --EDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHH
Confidence 489999999999887753
No 197
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.85 E-value=1.2e-19 Score=184.70 Aligned_cols=330 Identities=14% Similarity=0.067 Sum_probs=195.4
Q ss_pred CeeEecCC--CCC----cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCC-CCCCceeeecCC
Q 012104 33 GIELIASE--NFT----SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD-PTQWGVNVQPYS 105 (471)
Q Consensus 33 ~i~li~s~--n~~----s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~-~~~~~~~v~~~s 105 (471)
.|++.++. +.+ +|.|++++...+..... +...+|. .+.. +++ .+++++++|.+ .+ -.+.++|
T Consensus 44 ~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~--~~~~~~~--~~~~---~~l-~~~la~~~~~~~~~---~v~~~~g 112 (419)
T 2eo5_A 44 YLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAH--AAANDFY--NIPQ---LEL-AKKLVTYSPGNFQK---KVFFSNS 112 (419)
T ss_dssp EEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCC--CSCSCSC--CHHH---HHH-HHHHHHHSSCSSCE---EEEEESS
T ss_pred EEEccCChhhhccCCCCCHHHHHHHHHHHhhCcc--ccccccC--CHHH---HHH-HHHHHHhCCCCcCC---EEEEeCc
Confidence 35555554 333 69999999887743211 1111221 1222 223 35788899976 32 2355677
Q ss_pred hHHHHHHHHHHhcC-CCCEEEEeCCCCCCcccccccccCCcc-ceeccc---eeEEEeeeecCCCCC-------------
Q 012104 106 GSPANFAAYTAVLE-PHDRIMGLDLPSGGHLTHGYYTSGGKK-ISATSI---YFESLPYKVNSSTGY------------- 167 (471)
Q Consensus 106 Gt~A~~~~~~all~-pGD~Vl~~~~~~~g~~s~~~~~~~g~~-~~~~g~---~~~~~~~~v~~~~~~------------- 167 (471)
|++|+.+++.++.. +||+|++.+|.|.|.... .....|.. ....+. ...++.++.+ +++.
T Consensus 113 g~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~g~~~~~~~~~ 190 (419)
T 2eo5_A 113 GTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFG-SISLTASKAVQRSIVGPFMPGVIHVPYP-NPYRNPWHINGYENPSE 190 (419)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHH-HHHHCCSCGGGGCSSCCCCTTEEEECCC-CSSSCTTCCCTTTCHHH
T ss_pred hHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHh-hHhhcCCccccccccCCCCCCCEEECCC-ccccccccccccccchh
Confidence 88999999987654 499999999988654310 00000000 000000 0122333333 2221
Q ss_pred ---CCHHHHH-HHhhh----CCCcEEEEcC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-CC-
Q 012104 168 ---IDYDKLE-EKALD----FRPKLIICGG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NP- 231 (471)
Q Consensus 168 ---iD~~~le-~~~~~----~~pklIi~~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p- 231 (471)
+|+++|+ +.+.+ .++++|++++ +++|...+ +++|+++|+++|++||+|++|. |+...|... ..
T Consensus 191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~~g~~g~~~~~~~ 269 (419)
T 2eo5_A 191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-GLGRTGKLFAIEN 269 (419)
T ss_dssp HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGG
T ss_pred hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCcchhhHHh
Confidence 4789999 88864 3567888873 35686666 8999999999999999999997 553333211 11
Q ss_pred CC-CccEEEeCCCCcCC-C-CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhcc
Q 012104 232 FE-YCHIVTTTTHKSLR-G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308 (471)
Q Consensus 232 ~~-~aDiv~~s~~K~l~-G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~ 308 (471)
+. ..|++ |++|++. | .|.|+++++++ +. .+ .....+..+ .+...+++...+++..
T Consensus 270 ~~~~~d~~--t~sK~~~~G~~riG~~~~~~~---------------~~-~~-~~~~~~t~~-~n~~~~~aa~aal~~~-- 327 (419)
T 2eo5_A 270 FNTVPDVI--TLAKALGGGIMPIGATIFRKD---------------LD-FK-PGMHSNTFG-GNALACAIGSKVIDIV-- 327 (419)
T ss_dssp GTCCCSEE--EECGGGGTTTSCCEEEEEEGG---------------GC-CC-------CCC-CCHHHHHHHHHHHHHH--
T ss_pred cCCCCCEE--EecccccCCccceEEEEEchH---------------hh-cC-CcccCCCCC-CCHHHHHHHHHHHHHH--
Confidence 12 45666 4669975 4 67799999874 33 33 111112222 2334444554566543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCee
Q 012104 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGV 388 (471)
Q Consensus 309 ~~~~~~~~~~~~na~~l~~~L~~~g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~i 388 (471)
++..+++.++.++|.+.|++. +..+. +. ..++++++.+.+.... +.+.|.++||.+.+.. .+.+
T Consensus 328 ---~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~-g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~---------~~~l 391 (419)
T 2eo5_A 328 ---KDLLPHVNEIGKIFAEELQGL-ADDVR-GI-GLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG---------RSAI 391 (419)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTTS-SSEEE-EE-TTEEEEECSCHHHHHH-HHHHHHHTTEECEEET---------TTEE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHh-hhheE-ee-eEEEEEEEecCccHHH-HHHHHHHCCCEEecCC---------CCEE
Confidence 226677888889999999876 33322 22 3466778742111244 7677778999997631 3689
Q ss_pred EEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 389 RIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 389 Rig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
||+++..+ ++++++++.+.|.++++.
T Consensus 392 Ris~~~~~----t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 392 RVIPPLVI----SEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp EECCCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCC----CHHHHHHHHHHHHHHHHh
Confidence 99875444 489999999999887653
No 198
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=5.2e-20 Score=185.90 Aligned_cols=282 Identities=16% Similarity=0.142 Sum_probs=176.3
Q ss_pred HHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeec
Q 012104 83 RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVN 162 (471)
Q Consensus 83 ~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~ 162 (471)
++++++++|.+. .+.++||++|+.+++. +++|||+|++.++.|++.+.. + . ..+...| .+++.++++
T Consensus 61 r~~la~~~g~~~-----~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~-~-~---~~~~~~G--~~v~~v~~~ 127 (393)
T 1n8p_A 61 ERAVAALENAQY-----GLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRY-F-T---KVANAHG--VETSFTNDL 127 (393)
T ss_dssp HHHHHHHTTCSE-----EEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHH-H-H---HTSTTTC--SCCEEESSH
T ss_pred HHHHHHHhCCCc-----EEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHH-H-H---HHHHHcC--cEEEEeCCC
Confidence 467889999873 4667899999999999 999999999999988754320 0 0 0011223 344444332
Q ss_pred CCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHh----CCEEEEeccccchhhccccCCCCCC-Cc
Q 012104 163 SSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKC----GALLLCDMAHISGLVAAQEAANPFE-YC 235 (471)
Q Consensus 163 ~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~----g~~livD~a~~~glv~~g~~~~p~~-~a 235 (471)
| ++++++++ .++++|++. +|++|..+|+++|+++|+++ |+++++|++|..+.. ..++. ++
T Consensus 128 ------d-~~l~~~i~-~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~-----~~~~~~~~ 194 (393)
T 1n8p_A 128 ------L-NDLPQLIK-ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-----SNPLNFGA 194 (393)
T ss_dssp ------H-HHHHHHSC-SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-----CCGGGGTC
T ss_pred ------h-HHHHHhcc-cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCcccccc-----CCHHHcCC
Confidence 7 88998886 368888865 68899999999999999999 999999999985532 13344 68
Q ss_pred cEEEeCCCCcCCCC--Ce-EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCC-CCCCCCcHHHHHHHHHHHHHhccHHH
Q 012104 236 HIVTTTTHKSLRGP--RA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFP-SLQGGPHNHQIGALAVALKQASTPAF 311 (471)
Q Consensus 236 Div~~s~~K~l~Gp--rg-G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~-~~~g~p~~~~iaa~a~al~~~~~~~~ 311 (471)
|++++|+||++.++ |. |+++++++ ++.+.+.....+ +. ++.....++...+++ .+
T Consensus 195 di~~~S~sK~~g~~G~rigG~~~~~~~--------------~~~~~l~~~~~~~g~--~~~~~~~~~~~~~l~-----~~ 253 (393)
T 1n8p_A 195 DIVVHSATKYINGHSDVVLGVLATNNK--------------PLYERLQFLQNAIGA--IPSPFDAWLTHRGLK-----TL 253 (393)
T ss_dssp SEEEEETTTTTTCSSCCCCEEEEESCH--------------HHHHHHHHHHHHHCC--CCCHHHHHHHHHHHT-----TH
T ss_pred eEEEEECcccccCCCCceeEEEEeCCH--------------HHHHHHHHHHHhcCC--CCCHHHHHHHHhccc-----hH
Confidence 99999999997543 23 99888532 455544432111 11 122222222222222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC--ce-EeeCC--------------C--C-CeeEEEEccCCCCCHHHHHHHHhhcCeEe
Q 012104 312 KAYAKQVKANAVALGNYLTGKG--YS-LVTGG--------------T--E-NHLVLWDLRPLGLTGNKVEKLCDLCNITV 371 (471)
Q Consensus 312 ~~~~~~~~~na~~l~~~L~~~g--~~-i~~~~--------------~--~-~~~~~v~~~~~~~~~~~~~~~L~~~gI~v 371 (471)
....++..+|++.+.+.|++.+ +. +..++ . . .+++++.+.....+...+...|+..+|.+
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~ 333 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAE 333 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECC
Confidence 4566777888999999998763 32 21111 0 2 45677777531012223334444445555
Q ss_pred ccCC------cCCCCC----------C--CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 372 NKNA------VFGDSS----------A--LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 372 ~~~~------~p~~~~----------~--~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
+.+. .|.... . ...+.||||+...+ ++++++.+.++|.++
T Consensus 334 s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~----~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 334 SLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIED----TDDLLEDIKQALKQA 391 (393)
T ss_dssp CCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSC----HHHHHHHHHHHHHHH
T ss_pred CCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCC----HHHHHHHHHHHHHHh
Confidence 5442 122110 1 12478999986544 478888888887654
No 199
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.85 E-value=1.5e-19 Score=184.21 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=193.8
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.+.+++...+.. +. +.+..| ..+...++ ++++++++|.+. .+.++||++|+.+++.++..
T Consensus 74 ~~p~v~~ai~~~~~~-~~--~~~~~~--~~~~~~~l----~~~la~~~g~~~-----v~~~~ggteA~~~al~~~~~~~~ 139 (420)
T 2pb2_A 74 CHPALVEALKSQGET-LW--HTSNVF--TNEPALRL----GRKLIDATFAER-----VLFMNSGTEANETAFKLARHYAC 139 (420)
T ss_dssp TCHHHHHHHHHHHTT-CC--CCCTTS--CCHHHHHH----HHHHHHHSSCSE-----EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-cc--cccCcc--CCHHHHHH----HHHHHhhCCCCe-----EEEeCCHHHHHHHHHHHHHHHhh
Confidence 479999999887743 22 111122 12333333 367788888543 35678899999999998865
Q ss_pred ----CC-CEEEEeCCCCCCcccccccccCCccceeccce-----e-----EEEeeeecCCCCCCCHHHHHHHhhhCCCcE
Q 012104 120 ----PH-DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-----F-----ESLPYKVNSSTGYIDYDKLEEKALDFRPKL 184 (471)
Q Consensus 120 ----pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~-----~-----~~~~~~v~~~~~~iD~~~le~~~~~~~pkl 184 (471)
|| ++|++.++.|.+.... .+...|.. + .+..++ ..|+++|++++. .++++
T Consensus 140 ~~~~~g~~~vi~~~~~yh~~~~~--------~~~~~g~~~~~~~~~p~~~~~~~~~------~~d~~~le~~i~-~~~~~ 204 (420)
T 2pb2_A 140 VRHSPFKTKIIAFHNAFHGRSLF--------TVSVGGQPKYSDGFGPKPADIIHVP------FNDLHAVKAVMD-DHTCA 204 (420)
T ss_dssp HHTCTTCCEEEEETTCCCCSSHH--------HHHHSSCHHHHTTSSSCCSCEEEEC------TTCHHHHHHHCC-TTEEE
T ss_pred hccCCCCCEEEEEeCCcCCcCHH--------HHHhcCCccccccCCCCCCCeEEec------CCCHHHHHHHhc-cCceE
Confidence 78 5999999888654311 01112211 0 112221 248999999987 47888
Q ss_pred EEEc--CCCCCc----cccHHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCeEEE
Q 012104 185 IICG--GSAYPR----DWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMI 254 (471)
Q Consensus 185 Ii~~--~s~~g~----~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-GprgG~i 254 (471)
|++. +++.|. ..++++|+++|+++|++||+|++|. |+...|... ..+. ..|+++ ++|++. |.|.|++
T Consensus 205 vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~diit--~sK~l~~G~~iG~~ 281 (420)
T 2pb2_A 205 VVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDILT--SAKALGGGFPVSAM 281 (420)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSCCEEE
T ss_pred EEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeEE--ecccccCCCceEEE
Confidence 8876 334453 2467899999999999999999995 765444311 0112 468774 679975 4578999
Q ss_pred EeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC--
Q 012104 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK-- 332 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~-- 332 (471)
++++ ++.+.+.........+ ++....++...+++.+.. +++.+++.++.++|.+.|++.
T Consensus 282 ~~~~---------------~l~~~l~~~~~~~t~~-~~~~~~aa~~a~L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 342 (420)
T 2pb2_A 282 LTTQ---------------EIASAFHVGSHGSTYG-GNPLACAVAGAAFDIINT---PEVLQGIHTKRQQFVQHLQAIDE 342 (420)
T ss_dssp EECH---------------HHHTTCC----CCEEC-CCHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEhH---------------HHHHhhcCCCcCcccC-cCHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh
Confidence 8876 4444443211111122 233344444456766544 356677778888888888764
Q ss_pred CceEee--CCCCCeeEEEEccCC-CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 333 GYSLVT--GGTENHLVLWDLRPL-GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 333 g~~i~~--~~~~~~~~~v~~~~~-~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
++..+. .+ ...++++++... +.+..++.+.|.++||.+.++. ++.+||+++.. .+++|++++.
T Consensus 343 ~~~~~~~~~~-~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~---------~~~iRl~~~~~----~t~eei~~~~ 408 (420)
T 2pb2_A 343 QFDIFSDIRG-MGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG---------ADVMRFAPSLV----VEEADIHEGM 408 (420)
T ss_dssp HHCCEEEEEE-ETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS---------TTEEEECCCTT----CCHHHHHHHH
T ss_pred cCCCeEEEEe-cceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC---------CCEEEEECCCC----CCHHHHHHHH
Confidence 333211 12 244667777532 1256778888888999997641 46899997543 3489999999
Q ss_pred HHHHHHHHH
Q 012104 410 EFLHRAVTL 418 (471)
Q Consensus 410 ~~i~~~l~~ 418 (471)
+.|.++++.
T Consensus 409 ~~l~~~l~~ 417 (420)
T 2pb2_A 409 QRFAQAVGK 417 (420)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 200
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.84 E-value=1.8e-19 Score=185.13 Aligned_cols=320 Identities=13% Similarity=0.007 Sum_probs=196.6
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCC-CCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRY-YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~-~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~-- 119 (471)
.+|.|++++...+.+.. ..++ .+..+...++ +++++++++.+.+ -.+.++||++|+.+++.++..
T Consensus 67 ~~~~v~~a~~~~~~~~~-----~~~~~~~~~~~~~~l----~~~la~~~~~~~~---~v~~~~ggsea~~~al~~~~~~~ 134 (449)
T 3a8u_X 67 TRKEIQEAVAKQLSTLD-----YSPGFQYGHPLSFQL----AEKITDLTPGNLN---HVFFTDSGSECALTAVKMVRAYW 134 (449)
T ss_dssp SCHHHHHHHHHHTTTCS-----CCCSSSCCCHHHHHH----HHHHHTTSSTTEE---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCC-----CccccccCCHHHHHH----HHHHHHhCCCCCC---EEEEcCcHHHHHHHHHHHHHHHH
Confidence 37999999988774421 1122 1112222223 3677888876543 245577899999999988764
Q ss_pred ------CCCEEEEeCCCCCCcccccccccCCccceecc------------ceeEEEeeeecCC-C-CCCC--------HH
Q 012104 120 ------PHDRIMGLDLPSGGHLTHGYYTSGGKKISATS------------IYFESLPYKVNSS-T-GYID--------YD 171 (471)
Q Consensus 120 ------pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g------------~~~~~~~~~v~~~-~-~~iD--------~~ 171 (471)
+||+|++.++.|.|..... +...+ ..+..++++.... . ..+| ++
T Consensus 135 ~~~g~~~~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~ 206 (449)
T 3a8u_X 135 RLKGQATKTKMIGRARGYHGVNIAG--------TSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALAD 206 (449)
T ss_dssp HHTTCTTCCEEEEETTCCCCSSHHH--------HHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHH
T ss_pred HhcCCCCCCEEEEECCCcCCCChhh--------hhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHH
Confidence 7899999999886643110 11111 1123333221100 0 1256 99
Q ss_pred HHHHHhhh---CCCcEEEEcC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-CccEE
Q 012104 172 KLEEKALD---FRPKLIICGG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIV 238 (471)
Q Consensus 172 ~le~~~~~---~~pklIi~~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~aDiv 238 (471)
+|++++++ .++++|++++ +++|...+ +++|+++|+++|++||+|++|. |+...|.. ..+ . ..|++
T Consensus 207 ~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~-~~~~~~~~~~di~ 284 (449)
T 3a8u_X 207 ELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVIT-GFGRTGSM-FGADSFGVTPDLM 284 (449)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-SHHHHHTCCCSEE
T ss_pred HHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEecccc-CccccCcc-hhhhhcCCCCCEE
Confidence 99999874 3567888873 45788788 9999999999999999999996 43222221 111 1 35777
Q ss_pred EeCCCCcCCC--CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcC--------CCCCCCCCcHHHHHHHHHHHHHhcc
Q 012104 239 TTTTHKSLRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV--------FPSLQGGPHNHQIGALAVALKQAST 308 (471)
Q Consensus 239 ~~s~~K~l~G--prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~--------~~~~~g~p~~~~iaa~a~al~~~~~ 308 (471)
|++|++.| .|.|++++++ ++.+.+.... ..+...+.+...+++...+++.+..
T Consensus 285 --s~sK~l~~G~~~~G~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~ 347 (449)
T 3a8u_X 285 --CIAKQVTNGAIPMGAVIAST---------------EIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK 347 (449)
T ss_dssp --EECGGGGTTSSCCEEEEEEH---------------HHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH
T ss_pred --EEcccccCCCCceEEEEECH---------------HHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh
Confidence 55699865 6788888876 4555554321 1111112233444444456655432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-ceEeeC-CCCCeeEEEEccCCCC----CHHHHHHHHhhcCeEeccCCcCCCCCC
Q 012104 309 PAFKAYAKQVKANAVALGNYLTGKG-YSLVTG-GTENHLVLWDLRPLGL----TGNKVEKLCDLCNITVNKNAVFGDSSA 382 (471)
Q Consensus 309 ~~~~~~~~~~~~na~~l~~~L~~~g-~~i~~~-~~~~~~~~v~~~~~~~----~~~~~~~~L~~~gI~v~~~~~p~~~~~ 382 (471)
.++.+++.++.+++.+.|++.+ +.++.. .....++++++..... +..++.+.|.++||.+.++
T Consensus 348 ---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------- 416 (449)
T 3a8u_X 348 ---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFG-------- 416 (449)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEE--------
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecC--------
Confidence 2466777888888999988753 332210 1224567888754211 2235777777889999763
Q ss_pred CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 383 LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 383 ~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+.+||+++..+ ++++++++.+.|.++++.
T Consensus 417 --g~~iRis~~~~~----t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 417 --GDTLQFGPTFNS----KPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp --TTEEEECCCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCcC----CHHHHHHHHHHHHHHHHH
Confidence 168999975443 489999999999887753
No 201
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.84 E-value=1.6e-19 Score=183.08 Aligned_cols=352 Identities=14% Similarity=0.108 Sum_probs=205.6
Q ss_pred ccccChH-HHHHHHHHHHhc-cCCeeEecC----C---CCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHH
Q 012104 12 LETVDPE-IHDLIEKEKRRQ-CRGIELIAS----E---NFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLC 82 (471)
Q Consensus 12 ~~~~d~~-~~~~~~~e~~~~-~~~i~li~s----~---n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~ 82 (471)
+...+|+ ++.+.+. .+.. ...|+|..+ + ..+.|.|++|....+.+....+|... ....++.+.+
T Consensus 24 v~~~p~d~i~~l~~~-~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~------~G~p~lr~ai 96 (420)
T 4h51_A 24 IQAQAPDVIFDLAKR-AAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPI------SGYQPFIDEA 96 (420)
T ss_dssp CCCCCCCHHHHHHHH-HHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCT------TCCHHHHHHH
T ss_pred CCCCCCChHHHHHHH-HhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCc------CChHHHHHHH
Confidence 4444443 4555443 3333 346888765 2 24568999997666544433334321 2222333322
Q ss_pred HHHHHHhcCCCCCC-CceeeecCChHHHHHHHHH----HhcCCCCEEEEeCCCCCCcccccccccCCccceeccce-eEE
Q 012104 83 RSRALQTFHLDPTQ-WGVNVQPYSGSPANFAAYT----AVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIY-FES 156 (471)
Q Consensus 83 ~~~~~~lfg~~~~~-~~~~v~~~sGt~A~~~~~~----all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~-~~~ 156 (471)
.+. +||-.... ..+.+++.+||.|+..++. ++++|||+|++++|.|+.|.. .+...|.. +..
T Consensus 97 a~~---~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~---------i~~~aG~~~V~~ 164 (420)
T 4h51_A 97 VKI---IYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYG---------VVKAAGWKNICT 164 (420)
T ss_dssp HHH---HHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHH---------HHHHTTCCCEEE
T ss_pred HHH---hcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHH---------HHHHcCCeEEEe
Confidence 222 34533211 1134667788877765544 346899999999999988742 12234432 222
Q ss_pred EeeeecCCCCCCCHHHHHHHhhhCCC--cEEEEc--CCCCCccccH---HHHHHHHHHhCCEEEEeccccchhhccccCC
Q 012104 157 LPYKVNSSTGYIDYDKLEEKALDFRP--KLIICG--GSAYPRDWDY---ARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (471)
Q Consensus 157 ~~~~v~~~~~~iD~~~le~~~~~~~p--klIi~~--~s~~g~~~d~---~~i~~ia~~~g~~livD~a~~~glv~~g~~~ 229 (471)
.++ .+++++.+|.+.+.+.+....+ ++++.+ +||+|..++. ++|.++|+++++++++|++|. |+.+++...
T Consensus 165 ~~~-~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~-~~~~~~~~~ 242 (420)
T 4h51_A 165 YAY-YDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQ-GYASGSLDT 242 (420)
T ss_dssp EEC-EEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCT-TTTTSCHHH
T ss_pred ecc-ccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhh-hhccCCccc
Confidence 222 3446678999999888765433 455544 7999998865 566788999999999999997 776654322
Q ss_pred CCC------CCcc--EEEeCCCCc--CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHH
Q 012104 230 NPF------EYCH--IVTTTTHKS--LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGAL 299 (471)
Q Consensus 230 ~p~------~~aD--iv~~s~~K~--l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~ 299 (471)
.++ +..+ +++.|++|+ ++|+|.|++++..+.... . ..+...+........ +.|..+.....
T Consensus 243 ~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~------~--~~~~~~l~~~~r~~~-s~~p~~~a~~~ 313 (420)
T 4h51_A 243 DAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTK------R--ADVKSVMDSLIREEY-TCPPAHGARLA 313 (420)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHH------H--HHHHHHHHHHHHTTT-SSCCHHHHHHH
T ss_pred chHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHH------H--HHHHHHHHHhhhccc-CcchHHHHHHH
Confidence 221 1112 788999997 789999999887641000 0 001111221111222 33444433333
Q ss_pred HHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHcCCce----EeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeE
Q 012104 300 AVALKQ-----ASTPAFKAYAKQVKANAVALGNYLTGKGYS----LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNIT 370 (471)
Q Consensus 300 a~al~~-----~~~~~~~~~~~~~~~na~~l~~~L~~~g~~----i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~ 370 (471)
+..+.. ....+.+.+.+++.++++.|.+.|++.|.. .+.. ..+.+.|+ |++.+++ ++|+++||.
T Consensus 314 ~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~-q~GmF~~~-----gls~e~v-~~L~e~~Vy 386 (420)
T 4h51_A 314 HLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVIN-QIGMFSFL-----GLSKAQC-EYCQNHNIF 386 (420)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-CCSSEEEC-----CCCHHHH-HHHHHTTEE
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecC-CCceEEec-----CcCHHHH-HHHHhCCEE
Confidence 333321 111234566777778888899999887632 2221 23445443 4566666 568899998
Q ss_pred eccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 371 VNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 371 v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+.+ + -||++. |++++.++++++.|+++++.
T Consensus 387 ~~~------------~-gRis~A-----gl~~~ni~~~a~aI~~vvr~ 416 (420)
T 4h51_A 387 ITV------------S-GRANMA-----GLTHETALMLAQTINDAVRN 416 (420)
T ss_dssp CCT------------T-CEEEGG-----GCCHHHHHHHHHHHHHHHC-
T ss_pred EcC------------C-CEEEec-----cCCHHHHHHHHHHHHHHHHH
Confidence 743 1 299984 35689999999999999875
No 202
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.84 E-value=1.1e-18 Score=178.05 Aligned_cols=325 Identities=13% Similarity=0.056 Sum_probs=182.5
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL----- 118 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all----- 118 (471)
+|.|++++...+.+. ..++ ..++ ..+....+ .++++++++.+.+ -.+.++||++|+..++.+++
T Consensus 47 ~p~v~~a~~~~~~~~-~~~~-~~~~--~~~~~~~l----~~~la~~~~~~~~---~v~~~~gg~ea~~~al~~~~~~~~~ 115 (430)
T 3i4j_A 47 RAEVGERMAAQAARL-PFVH-GSQF--SSDVLEEY----AGRLARFVGLPTF---RFWAVSGGSEATESAVKLARQYHVE 115 (430)
T ss_dssp CHHHHHHHHHHHHHC-CCCC-TTTC--EEHHHHHH----HHHHHHHTTCTTC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-cccc-cccc--CCHHHHHH----HHHHHHhCCCCCC---EEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 899999988776442 1111 1111 11222222 3567888887654 23557789999999998886
Q ss_pred ---CCCCEEEEeCCCCCCcccccccccCCccceecccee------------EEEeeeecCCC---CCCCHHHHHHHhhh-
Q 012104 119 ---EPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF------------ESLPYKVNSST---GYIDYDKLEEKALD- 179 (471)
Q Consensus 119 ---~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~------------~~~~~~v~~~~---~~iD~~~le~~~~~- 179 (471)
.+||.|++.++.|.|+.. +. ....+... .+..++.+ +. +..|+++|++++++
T Consensus 116 ~g~~~~~~vi~~~~~yhg~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~le~~l~~~ 186 (430)
T 3i4j_A 116 RGEPGRFKVITRVPSYHGASL-GS-------LAASGMGARRELYTPLMRPEAWPKLPKP-DPARNGAEDAEGLRALLERE 186 (430)
T ss_dssp TTCTTCCEEEEETTC---------------------------------CGGGSCEECCC-CTTSCHHHHHTHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCcCCCCc-cc-------ccccCccccccccCCcCCCCCceEcCCC-cccchhhHHHHHHHHHHHhc
Confidence 457999999998866532 10 11111100 11111111 11 23477899998874
Q ss_pred --CCCcEEEEc--CC-CCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCC--CC-C-CccEEEeCCCCcC
Q 012104 180 --FRPKLIICG--GS-AYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PF-E-YCHIVTTTTHKSL 246 (471)
Q Consensus 180 --~~pklIi~~--~s-~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~--p~-~-~aDiv~~s~~K~l 246 (471)
.++++|+++ ++ +.|...+ +++|+++|+++|++||+|++|. |+...|.... .+ . ..|+++ ++|++
T Consensus 187 ~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~~~~g~~~~~~~~~~~~~di~t--~sK~l 263 (430)
T 3i4j_A 187 GPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-GMGRCGSPLALSRWSGVTPDIAV--LGKGL 263 (430)
T ss_dssp CGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTTCCCSEEE--ECGGG
T ss_pred CCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhhhhhcCCCCcEEE--Ecccc
Confidence 345677776 34 5565555 8999999999999999999997 6544332211 11 1 246665 55997
Q ss_pred C-C-CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc----CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 012104 247 R-G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA----VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (471)
Q Consensus 247 ~-G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~----~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~ 320 (471)
. | .|.|++++++ ++.+.+... ......+ .+...+++..++++.... +++.+++.+
T Consensus 264 ~~G~~r~G~~~~~~---------------~i~~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~ 324 (430)
T 3i4j_A 264 AAGYAPLAGLLAAP---------------QVYETVMGGSGAFMHGFTYA-GHPVSVAAGLSVLDIVER---EDLTGAAKE 324 (430)
T ss_dssp TTTSSCCEEEEECH---------------HHHHHHHHTTCBCCCCCTTT-TCHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred cCCccccEEEEECH---------------HHHHHHhccCCcccccCCCC-CCHHHHHHHHHHHHHHHc---ccHHHHHHH
Confidence 5 4 7779999877 566655542 1112222 233333343445654322 345556666
Q ss_pred HHHHHHHHHHcC-----CceEeeCCCCCeeEEEEccCC--------CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCe
Q 012104 321 NAVALGNYLTGK-----GYSLVTGGTENHLVLWDLRPL--------GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 387 (471)
Q Consensus 321 na~~l~~~L~~~-----g~~i~~~~~~~~~~~v~~~~~--------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~ 387 (471)
+.+++++.|++. ++..+. +. ..++++++... .....++.+.|.+.||.+.+...+.. +...+.
T Consensus 325 ~~~~~~~~l~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--~~~~~~ 400 (430)
T 3i4j_A 325 RGAQLLAGLQALQARFPQMMQVR-GT-GLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP--NGRGDH 400 (430)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEE-EE-TTEEEEEEC------------CHHHHHHHHHHTTEECC-------------CE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEE-EE-EEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC--CCCCCE
Confidence 666666666542 333332 22 33566665421 11235677888899999987532221 123468
Q ss_pred eEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 388 VRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 388 iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
+||+++... ++++++++.+.|.++++.
T Consensus 401 iRi~~~~~~----t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 401 LLLGPPLSI----TAAEVDGLLALLAGALED 427 (430)
T ss_dssp EEECCCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 999876544 379999999999888764
No 203
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.83 E-value=7.2e-19 Score=177.30 Aligned_cols=250 Identities=15% Similarity=0.095 Sum_probs=163.1
Q ss_pred chhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceecc
Q 012104 72 NEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATS 151 (471)
Q Consensus 72 ~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g 151 (471)
+.....+| +++++++|.+. .+.++||++|+.+++.++++|||+|++.++.|++...... ..+...|
T Consensus 58 ~~~~~~l~----~~la~~~g~~~-----~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~-----~~~~~~g 123 (389)
T 3acz_A 58 NPTVEQFE----EMVCSIEGAAG-----SAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFT-----HWLPRFG 123 (389)
T ss_dssp CHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHH-----HHHHHTT
T ss_pred ChHHHHHH----HHHHHHhCCCe-----EEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHH-----HHHHHcC
Confidence 34444554 67888999873 4667899999999999999999999999998876432100 0011233
Q ss_pred ceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCC
Q 012104 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAA 229 (471)
Q Consensus 152 ~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~ 229 (471)
.+++.++ ..|++++++.+++ ++++|++. +||+|...|+++|+++|+++|+++++|++|..+.. .
T Consensus 124 --~~~~~v~------~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~-----~ 189 (389)
T 3acz_A 124 --IEVDLID------TSDVEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCF-----L 189 (389)
T ss_dssp --CEEEEEC------TTCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----C
T ss_pred --CEEEEEC------CCCHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----c
Confidence 3444443 2589999998864 68888754 68899999999999999999999999999975532 1
Q ss_pred CCCC-CccEEEeCCCCcCCCCC---eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHH
Q 012104 230 NPFE-YCHIVTTTTHKSLRGPR---AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQ 305 (471)
Q Consensus 230 ~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~ 305 (471)
.|+. ++|+++.|+||++.||. +|+++++++ ++.+++.....+. .+++.....++...+++
T Consensus 190 ~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~--------------~~~~~l~~~~~~~-g~~~~~~~~~~~~~~l~- 253 (389)
T 3acz_A 190 KPLELGADIALHSVSKYINGHGDVIGGVSSAKTA--------------EDIATIKFYRKDA-GSLMAPMDAFLCARGMK- 253 (389)
T ss_dssp CGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSH--------------HHHHHHHHHHHHH-CCCCCHHHHHHHHHHHT-
T ss_pred CccccCCeEEEECChhhccCCCCceeEEEEECcH--------------HHHHHHHHHHHhc-CCCCCHHHHHHHHcCcc-
Confidence 2344 68999999999987763 499988872 2444443322110 11122222111112232
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHcCC-ce-EeeCC---------------CCCeeEEEEccCCCCCHHHHHHHHhhcC
Q 012104 306 ASTPAFKAYAKQVKANAVALGNYLTGKG-YS-LVTGG---------------TENHLVLWDLRPLGLTGNKVEKLCDLCN 368 (471)
Q Consensus 306 ~~~~~~~~~~~~~~~na~~l~~~L~~~g-~~-i~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~L~~~g 368 (471)
.+....++..+|++.+.+.|++.+ +. +...+ ....++.+.+. + .+++.+.|++.|
T Consensus 254 ----~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~--~--~~~~~~~l~~~~ 325 (389)
T 3acz_A 254 ----TLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK--S--FEAAKKLMEHLK 325 (389)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES--S--HHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC--C--HHHHHHHHHhCC
Confidence 234456677788899999888753 11 11111 01335556653 2 567889999999
Q ss_pred eEecc
Q 012104 369 ITVNK 373 (471)
Q Consensus 369 I~v~~ 373 (471)
|.+..
T Consensus 326 i~~~~ 330 (389)
T 3acz_A 326 VCTLA 330 (389)
T ss_dssp SSEEB
T ss_pred CcEEC
Confidence 87765
No 204
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.83 E-value=1.3e-19 Score=186.57 Aligned_cols=280 Identities=17% Similarity=0.141 Sum_probs=174.8
Q ss_pred HHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeee
Q 012104 82 CRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKV 161 (471)
Q Consensus 82 ~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v 161 (471)
.++++++++|.+. .+.++||++|+.+++. +++|||+|++.++.|+++.... . ..+...| .+++.++.
T Consensus 138 l~~~la~~~g~~~-----~i~~~sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~--~---~~~~~~G--~~v~~v~~ 204 (464)
T 1ibj_A 138 LESLLAKLDKADR-----AFCFTSGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLL--S---QVVPRSG--VVVKRVNT 204 (464)
T ss_dssp HHHHHHHHHTCSE-----EEEESSHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHH--H---HTSGGGT--CEEEEECT
T ss_pred HHHHHHHHhCCCe-----EEEECCHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHH--H---HHHHHcC--CEEEEeCC
Confidence 3467888999763 3567899999988775 8899999999999987653100 0 0011233 34444432
Q ss_pred cCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEE
Q 012104 162 NSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIV 238 (471)
Q Consensus 162 ~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv 238 (471)
.|++++++.+. .++++|++. +||+|..+|+++|+++|+++|+++++|++|..|.. ..++. ++|++
T Consensus 205 ------~d~~~l~~~i~-~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~-----~~~~~~~~div 272 (464)
T 1ibj_A 205 ------TKLDEVAAAIG-PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-----SRPLELGADIV 272 (464)
T ss_dssp ------TSHHHHHHHCC-SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-----CCGGGTTCSEE
T ss_pred ------CCHHHHHHHhc-cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCEEE
Confidence 28999999886 478888865 68899999999999999999999999999976532 23333 68999
Q ss_pred EeCCCCcCCCC---CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCC-CCCCCCCcHHHHHHHHHHHHHhccHHHHHH
Q 012104 239 TTTTHKSLRGP---RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVF-PSLQGGPHNHQIGALAVALKQASTPAFKAY 314 (471)
Q Consensus 239 ~~s~~K~l~Gp---rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~-~~~~g~p~~~~iaa~a~al~~~~~~~~~~~ 314 (471)
++|+||++.|| ++|+++++++ ++.+.+..... .+ ++.+.....+...+++. ....
T Consensus 273 ~~S~sK~~~g~~Gl~~G~l~~~~~--------------~l~~~l~~~~~~~g--~~~~~~~~~a~~~al~~-----~~~r 331 (464)
T 1ibj_A 273 MHSATKFIAGHSDVMAGVLAVKGE--------------KLAKEVYFLQNSEG--SGLAPFDCWLCLRGIKT-----MALR 331 (464)
T ss_dssp EEETTTTTTCSSCCCCEEEEECSH--------------HHHHHHHHHHHHTT--CBCCHHHHHHHHHHHTT-----HHHH
T ss_pred EECCcccccCCCCCcEEEEEEChH--------------HHHHHHHHHHHhcC--CCCCHHHHHHHHhchhh-----HHHH
Confidence 99999998765 6699998863 45554443211 11 12222222222223321 2223
Q ss_pred HHHHHHHHHHHHHHHHcCC---------------ceEeeCCC--CCeeEEEEccCCCCC-HHHHHHHHhhcCeEeccCCc
Q 012104 315 AKQVKANAVALGNYLTGKG---------------YSLVTGGT--ENHLVLWDLRPLGLT-GNKVEKLCDLCNITVNKNAV 376 (471)
Q Consensus 315 ~~~~~~na~~l~~~L~~~g---------------~~i~~~~~--~~~~~~v~~~~~~~~-~~~~~~~L~~~gI~v~~~~~ 376 (471)
.++...++..+.+.|++.+ +++..... ...++++++. +.+ ...+.+.|...||.++.+..
T Consensus 332 ~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~--~~~~~~~~~~~L~~~gi~v~~G~~ 409 (464)
T 1ibj_A 332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG--SVALSKHLVETTKYFSIAVSFGSV 409 (464)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS--CHHHHHHHHHHCSSSEECSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC--CHHHHHHHHHhcCcceEeecCCCC
Confidence 3444556666666666532 22221111 1346777773 221 22456667778898887641
Q ss_pred ------CC-----CC-----C--CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 377 ------FG-----DS-----S--ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 377 ------p~-----~~-----~--~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
|. .. . ...++.+||++.. +|++++.+.|.+++.
T Consensus 410 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--------edi~~li~~L~~al~ 460 (464)
T 1ibj_A 410 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--------EDVDDLISDLDIAFK 460 (464)
T ss_dssp SCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--------SCHHHHHHHHHHHHH
T ss_pred ceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--------CCHHHHHHHHHHHHh
Confidence 11 00 0 0124689999732 578888888877764
No 205
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.82 E-value=1.4e-18 Score=177.44 Aligned_cols=328 Identities=14% Similarity=0.052 Sum_probs=193.0
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--CC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~p 120 (471)
.+|.|++++...+.... +....|. .+...++ .++++++++.+.+ -.+.++||++|+.+++.++. ..
T Consensus 60 ~~p~v~~a~~~~~~~~~---~~~~~~~--~~~~~~l----~~~la~~~~~~~~---~v~~~~gg~ea~~~a~~~~~~~~~ 127 (433)
T 1zod_A 60 CHPEIVSVIGEYAGKLD---HLFSEML--SRPVVDL----ATRLANITPPGLD---RALLLSTGAESNEAAIRMAKLVTG 127 (433)
T ss_dssp TCHHHHHHHHHHHHHCC---CCCTTCC--CHHHHHH----HHHHHHHSCTTCC---EEEEESCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCc---ccccccC--CHHHHHH----HHHHHHhCCCCcC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 37999999988774421 1111111 1222222 3567888887543 23556789999999988653 34
Q ss_pred CCEEEEeCCCCCCcccccccccCCc----cceeccceeEEEeeeecC---------CCCCCCHHHHHHHhhh---CCCcE
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGK----KISATSIYFESLPYKVNS---------STGYIDYDKLEEKALD---FRPKL 184 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~----~~~~~g~~~~~~~~~v~~---------~~~~iD~~~le~~~~~---~~pkl 184 (471)
+|+|++.++.|.|.... .....+. .......++..++++... +.+.+|+++|++.+++ .++++
T Consensus 128 ~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~ 206 (433)
T 1zod_A 128 KYEIVGFAQSWHGMTGA-AASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAA 206 (433)
T ss_dssp CCEEEEETTCCCCSSHH-HHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEE
T ss_pred CCeEEEECCCcCCCChh-HHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEE
Confidence 68999999988654310 0000000 000000122333322100 0112579999998874 45678
Q ss_pred EEEcC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-CccEEEeCCCCcCC-CCCeEE
Q 012104 185 IICGG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GPRAGM 253 (471)
Q Consensus 185 Ii~~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~aDiv~~s~~K~l~-GprgG~ 253 (471)
|++++ +++|...+ +++|+++|+++|++||+|++|. |+...|.. ..+ . ..|++ |++|++. |.|.|+
T Consensus 207 vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~~g~~g~~-~~~~~~~~~~di~--s~sK~~~~G~~ig~ 282 (433)
T 1zod_A 207 FIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-GVGRTGTM-FACQRDGVTPDIL--TLSKTLGAGLPLAA 282 (433)
T ss_dssp EEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECHHHHTTSSCEE
T ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcCchH-hHHhhcCCCCCEE--EecccccCCCCeeE
Confidence 88873 56786666 8999999999999999999997 55332321 111 1 34665 5669964 567899
Q ss_pred EEeeCCCCCCCCCCCCCcccchHhhhhhcCCC--CCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 254 IFYRKGPKPPKKGQPEGAVYDFEDKINFAVFP--SLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 254 i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~--~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
+++++ ++.+.+....+. +..++ +....++..++++.+.+ .++.+++.++.+++.+.|++
T Consensus 283 ~~~~~---------------~~~~~~~~~~~~~~~t~~~-~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~ 343 (433)
T 1zod_A 283 IVTSA---------------AIEERAHELGYLFYTTHVS-DPLPAAVGLRVLDVVQR---DGLVARANVMGDRLRRGLLD 343 (433)
T ss_dssp EEECH---------------HHHHHHHHTTCCCCCTTTT-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEhH---------------HHHHhhccCCCCCCCCCCc-CHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHH
Confidence 99887 555555542211 22222 33334444456655432 23456666777777777765
Q ss_pred C----C-ceEeeCCCCCeeEEEEccCC-------CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcC
Q 012104 332 K----G-YSLVTGGTENHLVLWDLRPL-------GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRG 399 (471)
Q Consensus 332 ~----g-~~i~~~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g 399 (471)
. + +..+. +. ..++++++... ..+..++.+.|.++||.+.++..++ ..+.+||+++..+
T Consensus 344 l~~~~~~~~~~~-~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~-----~~~~lRi~~~~~~--- 413 (433)
T 1zod_A 344 LMERFDCIGDVR-GR-GLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPG-----MGGVFRIAPPLTV--- 413 (433)
T ss_dssp HHHHCTTEEEEE-EE-TTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCTT-----SCCEEEECCCTTC---
T ss_pred HHHhCCCeEEEE-EE-EEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCCC-----CCCEEEEECCcCC---
Confidence 3 2 22222 22 34567776421 1235667777778999998754221 1378999875444
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 012104 400 LLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 400 ~~~~d~~~l~~~i~~~l~ 417 (471)
++++++++.+.|.++++
T Consensus 414 -t~~~i~~~l~~l~~~l~ 430 (433)
T 1zod_A 414 -SEDEIDLGLSLLGQAIE 430 (433)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 48999999999988765
No 206
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.82 E-value=1.5e-18 Score=177.65 Aligned_cols=321 Identities=17% Similarity=0.106 Sum_probs=189.8
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh--cCC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEP 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al--l~p 120 (471)
.+|.|++++...+... . .+...+ +..+...+ .+++++++++....+ -.+.++||++|+..++.++ ..+
T Consensus 60 ~~p~v~~a~~~~~~~~-~-~~~~~~--~~~~~~~~----l~~~la~~~~~~~~~--~v~~~~ggsea~~~al~~~~~~~~ 129 (439)
T 3dxv_A 60 GHPAIVAAVSAAAANP-A-GATILS--ASNAPAVT----LAERLLASFPGEGTH--KIWFGHSGSDANEAAYRAIVKATG 129 (439)
T ss_dssp SCHHHHHHHHHHHHSC-S-CSCSSS--SEEHHHHH----HHHHHHHTTTCTTTE--EEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhc-c-Cccccc--cCCHHHHH----HHHHHHHhCCCCCCC--EEEEeCCHHHHHHHHHHHHHHHhC
Confidence 4799999988776443 1 221111 11222222 346788888544311 2466789999999999875 346
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceecccee------------EEEeeeecCCCCCC-----CHHHHHHHhh---hC
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYF------------ESLPYKVNSSTGYI-----DYDKLEEKAL---DF 180 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~------------~~~~~~v~~~~~~i-----D~~~le~~~~---~~ 180 (471)
++.|++.++.|.|..... +...+... .+..++.+ ..+.. |+++|+++++ ..
T Consensus 130 ~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~ 200 (439)
T 3dxv_A 130 RSGVIAFAGAYHGCTVGS--------MAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTEKLAAVPAG 200 (439)
T ss_dssp CCEEEEETTCCCCSSHHH--------HCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHHHHHTSCTT
T ss_pred CCEEEEECCCCCCCcHHH--------HhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHHHHHhcCCC
Confidence 788888888775543211 11111100 01111111 11112 7999999984 34
Q ss_pred CCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C-CccEEEeCCCCcCC-CC
Q 012104 181 RPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E-YCHIVTTTTHKSLR-GP 249 (471)
Q Consensus 181 ~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~-~aDiv~~s~~K~l~-Gp 249 (471)
++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|.. ..+ . ..|++ |++|++. |.
T Consensus 201 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~-~~~~~~~~~~di~--s~sK~~~~G~ 276 (439)
T 3dxv_A 201 SIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRL-HCFEHEGFVPDIL--VLGKGLGGGL 276 (439)
T ss_dssp CEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSS-SGGGGTTCCCSEE--EECGGGGTTS
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchh-hHHHhcCCCCCEE--EEcchhcCCc
Confidence 56777766 455677777 9999999999999999999997 65333321 111 1 35676 6679964 56
Q ss_pred CeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 012104 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329 (471)
Q Consensus 250 rgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L 329 (471)
|.|++++++ ++.+.+......+.. ++...+++...+++.... +++.+++.++.+++++.|
T Consensus 277 riG~~~~~~---------------~~~~~~~~~~~~~t~--~~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~~~l 336 (439)
T 3dxv_A 277 PLSAVIAPA---------------EILDCASAFAMQTLH--GNPISAAAGLAVLETIDR---DDLPAMAERKGRLLRDGL 336 (439)
T ss_dssp CCEEEEEEH---------------HHHTSCSSSSCCTTT--TCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECH---------------HHHhhhcCCCcCCCc--ccHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 889999987 455444433222222 233333333345554322 345566666777777776
Q ss_pred HcC----C-ceEeeCCCCCeeEEEEcc-------CCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCC
Q 012104 330 TGK----G-YSLVTGGTENHLVLWDLR-------PLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTS 397 (471)
Q Consensus 330 ~~~----g-~~i~~~~~~~~~~~v~~~-------~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~ 397 (471)
.+. + +..+. +. ..++++++. +.+.+..++.+.|.+.||.+.++. ...+.+||+++..+
T Consensus 337 ~~~~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~iRi~~~~~~- 406 (439)
T 3dxv_A 337 SELAKRHPLIGDIR-GR-GLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVG-------MNGNVLEFTPPLTI- 406 (439)
T ss_dssp HHHHHHCTTEEEEE-EE-TTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEES-------TTSCEEEECCCTTC-
T ss_pred HHHHHhCCCeEEEE-EE-EEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecC-------CCCCEEEEECCCCC-
Confidence 653 2 22222 22 335566552 112234567777778899997652 12478999875543
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH
Q 012104 398 RGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 398 ~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
++++++++.+.|.++++..
T Consensus 407 ---t~e~i~~~l~~l~~~l~~~ 425 (439)
T 3dxv_A 407 ---TETDIHKALDLLDRAFSEL 425 (439)
T ss_dssp ---CHHHHHHHHHHHHHHHHTG
T ss_pred ---CHHHHHHHHHHHHHHHHHH
Confidence 4899999999999888653
No 207
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.82 E-value=6.8e-19 Score=179.37 Aligned_cols=190 Identities=18% Similarity=0.148 Sum_probs=128.9
Q ss_pred eEecCCCCCcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHH
Q 012104 35 ELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAY 114 (471)
Q Consensus 35 ~li~s~n~~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~ 114 (471)
++..+.++..+.+.++... +.+. ..|+...|+ +......+| +++++++|.+. .+.++||+.|+.+++
T Consensus 24 pi~~~~~~~~~~~~~~~~~-~~~~-~~~~~y~~~--~~~~~~~l~----~~la~~~g~~~-----~v~~~sGt~A~~~~l 90 (421)
T 2ctz_A 24 PIYPTTSYVFKSPEHAANL-FALK-EFGNIYSRI--MNPTVDVLE----KRLAALEGGKA-----ALATASGHAAQFLAL 90 (421)
T ss_dssp CBCCCSCBCCSCHHHHHHH-HTTT-TGGGSCBTT--BCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHHHH
T ss_pred CeeccceeeeCCHHHHHHh-hccc-cCCCcccCC--CChHHHHHH----HHHHHHhCCCc-----eEEecCHHHHHHHHH
Confidence 4555667765555444322 2111 123333333 223444444 67888999874 366789999999999
Q ss_pred HHhcCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEee-eecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCC
Q 012104 115 TAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPY-KVNSSTGYIDYDKLEEKALDFRPKLIICG--GSA 191 (471)
Q Consensus 115 ~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~-~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~ 191 (471)
.++++|||+|++..+.|++...... ......| .+++.+ +. .|++++++.+.+ ++++|++. +|+
T Consensus 91 ~~~~~~gd~vi~~~~~~~~~~~~~~-----~~~~~~g--~~~~~~~~~------~d~~~l~~~i~~-~~~~v~~~~~~n~ 156 (421)
T 2ctz_A 91 TTLAQAGDNIVSTPNLYGGTFNQFK-----VTLKRLG--IEVRFTSRE------ERPEEFLALTDE-KTRAWWVESIGNP 156 (421)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHH-----THHHHTT--CEEEECCTT------CCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred HHHhCCCCEEEEeCCCchHHHHHHH-----HHHHHcC--CEEEEECCC------CCHHHHHHhhcc-CCeEEEEECCCCC
Confidence 9999999999999998876532100 0011223 344444 32 289999999874 78888755 678
Q ss_pred CCccccHHHHHHHHHHhCCEEEEeccc-cchhhccccCCCCCC-CccEEEeCCCCcCCCCC---eEEEEe
Q 012104 192 YPRDWDYARFRAVADKCGALLLCDMAH-ISGLVAAQEAANPFE-YCHIVTTTTHKSLRGPR---AGMIFY 256 (471)
Q Consensus 192 ~g~~~d~~~i~~ia~~~g~~livD~a~-~~glv~~g~~~~p~~-~aDiv~~s~~K~l~Gpr---gG~i~~ 256 (471)
+|...|+++|+++|+++|+++++|++| +.|.. ..++. ++|++++|+||++.||. ||+++.
T Consensus 157 ~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-----~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 157 ALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-----LRPLAWGAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-----CCGGGGTCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECCccccccc-----CCccccCCeEEEECCcccccCCCCcEEEEEEe
Confidence 999999999999999999999999999 76631 12344 68999999999987754 445554
No 208
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.82 E-value=5e-18 Score=171.15 Aligned_cols=325 Identities=14% Similarity=0.105 Sum_probs=194.3
Q ss_pred CeeEecC--CCC---CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 33 GIELIAS--ENF---TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 33 ~i~li~s--~n~---~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
.|++.++ .+. .+|.|++++...+.... .++ .++ ..+....+ ++++++++|.+. .+.++||+
T Consensus 38 ~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~--~~~--~~~~~~~l----~~~la~~~~~~~-----v~~~~gg~ 103 (395)
T 3nx3_A 38 YLDFSSGIGVCALGYNHAKFNAKIKAQVDKLL-HTS--NLY--YNENIAAA----AKNLAKASALER-----VFFTNSGT 103 (395)
T ss_dssp EEESSHHHHTCTTCBSCHHHHHHHHHHHTTCS-CCC--TTS--BCHHHHHH----HHHHHHHHTCSE-----EEEESSHH
T ss_pred EEECCCcHHhccCCCCCHHHHHHHHHHHHhcc-ccc--ccc--CCHHHHHH----HHHHHHhcCCCe-----EEEeCCHH
Confidence 4555544 333 37999999987764321 121 111 12333333 367778888442 46678999
Q ss_pred HHHHHHHHHhc-------CCCCEEEEeCCCCCCcccccccccCCccceec---cceeEEEeeeecCCCCCCCHHHHHHHh
Q 012104 108 PANFAAYTAVL-------EPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT---SIYFESLPYKVNSSTGYIDYDKLEEKA 177 (471)
Q Consensus 108 ~A~~~~~~all-------~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~---g~~~~~~~~~v~~~~~~iD~~~le~~~ 177 (471)
+|+.+++.++. .+||+|++.++.|.|...... ...+...... ....++..++ ..|+++|++++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~l~~~l 176 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGAL-SLTANEKYQKPFKPLISGVKFAK------YNDISSVEKLV 176 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHH-TTCCCHHHHGGGCSCCSCEEEEC------TTCHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHH-hhcCCcccccccCCCCCCcEEeC------CCCHHHHHHhc
Confidence 99999998775 468999999998866531100 0000000000 0001111111 23899999988
Q ss_pred hhCCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-
Q 012104 178 LDFRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR- 247 (471)
Q Consensus 178 ~~~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~- 247 (471)
+ .++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|... .... ..|+++ ++|++.
T Consensus 177 ~-~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~d~~t--~sK~~~~ 252 (395)
T 3nx3_A 177 N-EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC-GMGRSGKFFAYEHAQILPDIMT--SAKALGC 252 (395)
T ss_dssp C-TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--ECGGGTT
T ss_pred c-CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCcCCcchhHHhcCCCCCEEE--ecccccC
Confidence 6 467777765 455666666 8999999999999999999997 553322211 1111 346665 459863
Q ss_pred CCCeEEEEeeCCCCCCCCCCCCCcccch-HhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 012104 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDF-EDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALG 326 (471)
Q Consensus 248 GprgG~i~~~~~~~~~~~~~~~i~~~~l-~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~ 326 (471)
|+|.|++++++ ++ .+.+......+.++. +....++...+++.... +++.++..++.++++
T Consensus 253 G~~~G~~~~~~---------------~~~~~~~~~~~~~~~~~~-~~~~~~aa~aal~~~~~---~~~~~~~~~~~~~~~ 313 (395)
T 3nx3_A 253 GLSVGAFVINQ---------------KVASNSLEAGDHGSTYGG-NPLVCAGVNAVFEIFKE---EKILENVNKLTPYLE 313 (395)
T ss_dssp TSCCEEEEECH---------------HHHHHHSCTTCCSSCBSC-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHH
T ss_pred CCceEEEEEch---------------hhhhhhcCCcccCCCCCC-CHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Confidence 56889998887 45 555544322222222 33333444445654322 244555566666666
Q ss_pred HHHHc----CC-ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCC
Q 012104 327 NYLTG----KG-YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLL 401 (471)
Q Consensus 327 ~~L~~----~g-~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~ 401 (471)
+.|.+ .+ +..+. ....++++++.. ..+..++.+.|.+.||.+.++. .+.+||+++..+ +
T Consensus 314 ~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~---------~~~iRi~~~~~~----t 377 (395)
T 3nx3_A 314 QSLDELINEFDFCKKRK--GLGFMQGLSLDK-SVKVAKVIQKCQENALLLISCG---------ENDLRFLPPLIL----Q 377 (395)
T ss_dssp HHHHHHHHHCTTEEEEE--EETTEEEEEECT-TSCHHHHHHHHHHTTEECEEET---------TTEEEECCCTTC----C
T ss_pred HHHHHHHHhCCCeEEEE--eEEEEEEEEeCC-cchHHHHHHHHHHCCCEEecCC---------CCEEEEECCCCC----C
Confidence 66654 22 22222 123466777754 2367788888889999997641 478999876554 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 012104 402 EKDFEQIGEFLHRAVT 417 (471)
Q Consensus 402 ~~d~~~l~~~i~~~l~ 417 (471)
+++++++.+.|.++++
T Consensus 378 ~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 378 KEHIDEMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999988775
No 209
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.82 E-value=4.2e-19 Score=179.55 Aligned_cols=213 Identities=16% Similarity=0.147 Sum_probs=143.8
Q ss_pred cchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCCCCEEEEeCCCCCCcccccccccCCcc-cee
Q 012104 71 GNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKK-ISA 149 (471)
Q Consensus 71 g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~pGD~Vl~~~~~~~g~~s~~~~~~~g~~-~~~ 149 (471)
++.....+| +++++++|.+. .+.++||++|+.+ +.++++|||+|++.++.|++...... .. +..
T Consensus 65 ~~p~~~~l~----~~la~l~g~~~-----~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~-----~~~~~~ 129 (400)
T 3nmy_A 65 HNPTRFAYE----RCVAALEGGTR-----AFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFE-----RVRRRT 129 (400)
T ss_dssp CCHHHHHHH----HHHHHHHTCSE-----EEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHH-----HTHHHH
T ss_pred CCHHHHHHH----HHHHHHhCCCC-----EEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHH-----HhhHhh
Confidence 445555665 56888999764 4667899999988 57789999999999999875432100 00 011
Q ss_pred ccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEc--CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhcccc
Q 012104 150 TSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG--GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQE 227 (471)
Q Consensus 150 ~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~--~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~ 227 (471)
.| .+++.++. .|++++++.+.+ ++++|++. +||+|...|+++|+++|+++|+++++|++|..+...
T Consensus 130 ~g--~~~~~v~~------~d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~--- 197 (400)
T 3nmy_A 130 AG--LDFSFVDL------TDPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ--- 197 (400)
T ss_dssp HC--CEEEEECT------TSHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC---
T ss_pred cC--eEEEEECC------CCHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC---
Confidence 23 34444432 289999999864 78888754 788999999999999999999999999999755432
Q ss_pred CCCCCC-CccEEEeCCCCcCCCC---CeE-EEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHH
Q 012104 228 AANPFE-YCHIVTTTTHKSLRGP---RAG-MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA 302 (471)
Q Consensus 228 ~~~p~~-~aDiv~~s~~K~l~Gp---rgG-~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~a 302 (471)
.|+. ++|+++.|+||++.|| .|| ++++.++ ++.+++....... ..+++... ++ .+
T Consensus 198 --~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~--------------~~~~~l~~~~~~~-g~~~~~~~-a~--~~ 257 (400)
T 3nmy_A 198 --RPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNA--------------ELAEQMAFLQNSI-GGVQGPFD-SF--LA 257 (400)
T ss_dssp --CGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCH--------------HHHHHHHHHHHHH-CCBCCHHH-HH--HH
T ss_pred --ChhhcCCcEEEecCccccCCCCCcceeEEEEeCCH--------------HHHHHHHHHHHhc-CCCCCHHH-HH--HH
Confidence 3444 6899999999999876 467 6666553 4555443321110 11112211 11 12
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHcC
Q 012104 303 LKQASTPAFKAYAKQVKANAVALGNYLTGK 332 (471)
Q Consensus 303 l~~~~~~~~~~~~~~~~~na~~l~~~L~~~ 332 (471)
++.+. .+....++..+|++.+.+.|++.
T Consensus 258 l~~l~--~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 258 LRGLK--TLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp HHHHT--THHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHh--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 33222 34566778899999999999876
No 210
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.81 E-value=4.2e-18 Score=175.30 Aligned_cols=323 Identities=12% Similarity=-0.008 Sum_probs=195.6
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.|.+|+...+... ..... .+|. .+...+ .+++++++++.+.+ -.+.++||++|+.+++..+..
T Consensus 92 ~~p~v~~A~~~~~~~~-~~~~~-~~~~--~~~~~~----L~e~la~~~~~~~~---~v~~~~sGseA~~~Alk~a~~~~~ 160 (457)
T 3tfu_A 92 GHPALDQALTTQLRVM-NHVMF-GGLT--HEPAAR----LAKLLVDITPAGLD---TVFFSDSGSVSVEVAAKMALQYWR 160 (457)
T ss_dssp TCHHHHHHHHHHHHHC-SCCCS-SSEE--CHHHHH----HHHHHHHHSSTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCccc-cccC--CHHHHH----HHHHHHHhCCCCcC---EEEEeCcHHHHHHHHHHHHHHHHH
Confidence 3799999988777442 11110 1111 122222 24678888875443 245578999999999988764
Q ss_pred ----CC-CEEEEeCCCCCCcccccccccCC-c---cceec--cceeEEEeeeecCCCCCCCHHHHHHHhhh--CCCcEEE
Q 012104 120 ----PH-DRIMGLDLPSGGHLTHGYYTSGG-K---KISAT--SIYFESLPYKVNSSTGYIDYDKLEEKALD--FRPKLII 186 (471)
Q Consensus 120 ----pG-D~Vl~~~~~~~g~~s~~~~~~~g-~---~~~~~--g~~~~~~~~~v~~~~~~iD~~~le~~~~~--~~pklIi 186 (471)
|| ++|++.++.|.|... +.....+ . ...+. ......++++.+ .....|+++|++++.+ .++++|+
T Consensus 161 ~~g~~g~~~ii~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~d~~~le~~l~~~~~~~aavi 238 (457)
T 3tfu_A 161 GRGLPGKRRLMTWRGGYHGDTF-LAMSICDPHGGMHSLWTDVLAAQVFAPQVPR-DYDPAYSAAFEAQLAQHAGELAAVV 238 (457)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-HHHTTSCCC----------CCCCEEECCCCS-SCCHHHHHHHHHHHHHHGGGEEEEE
T ss_pred hcCCCCCceEEEEcCCcCCccH-HhhcccCCcccccccccCCCCCceEecCCCc-ccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 66 489998888765421 1000000 0 00000 011222232221 1123588999998874 3567777
Q ss_pred EcC---CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC----CccEEEeCCCCcCCC--CCeEE
Q 012104 187 CGG---SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----YCHIVTTTTHKSLRG--PRAGM 253 (471)
Q Consensus 187 ~~~---s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~----~aDiv~~s~~K~l~G--prgG~ 253 (471)
+.+ ++.|...+ +++|+++|+++|++||+|++|. |+...|.. ..++ ..|++ |++|+|.| +|.|+
T Consensus 239 ~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~gr~G~~-~a~~~~~~~pdii--t~sK~l~gG~~~lG~ 314 (457)
T 3tfu_A 239 VEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT-GFGRTGAL-FAADHAGVSPDIM--CVGKALTGGYLSLAA 314 (457)
T ss_dssp ECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEE--EECGGGGTTSSCCEE
T ss_pred EeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc-CCccccch-hHhHhcCCCceEE--EEChhhhCCCcceEE
Confidence 765 56776665 8999999999999999999986 65433321 1111 35777 55699987 68999
Q ss_pred EEeeCCCCCCCCCCCCCcccchHhhhhh---c--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 012104 254 IFYRKGPKPPKKGQPEGAVYDFEDKINF---A--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 254 i~~~~~~~~~~~~~~~i~~~~l~~~i~~---~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~ 328 (471)
+++++ ++.+.+.. . ...+.+++ +....++..++++.+.. +.+.+++.++.+++++.
T Consensus 315 v~~~~---------------~i~~~~~~~~~~~~~~~~t~~~-n~~a~aaa~aaL~~~~~---~~~~~~~~~~~~~l~~~ 375 (457)
T 3tfu_A 315 TLCTA---------------DVAHTISAGAAGALMHGPTFMA-NPLACAVSVASVELLLG---QDWRTRITELAAGLTAG 375 (457)
T ss_dssp EEEEH---------------HHHHHHHHSSSCSCCCCCTTTT-CHHHHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHH
T ss_pred EEEcH---------------HHHHHhhccCCCceeEecCCCc-CHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHH
Confidence 99987 55555531 1 11112222 33333333345665433 24566777788888888
Q ss_pred HHcC----CceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHH
Q 012104 329 LTGK----GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKD 404 (471)
Q Consensus 329 L~~~----g~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d 404 (471)
|++. ++..+.+ ...++++++.. ..+..++.+.|.+.||.+.+. .+.+||..+... +++|
T Consensus 376 L~~l~~~~~v~~vr~--~G~~~~i~l~~-~~~~~~~~~~l~~~Gv~v~~~----------~~~lRi~p~~~~----t~ee 438 (457)
T 3tfu_A 376 LDTARALPAVTDVRV--CGAIGVIECDR-PVDLAVATPAALDRGVWLRPF----------RNLVYAMPPYIC----TPAE 438 (457)
T ss_dssp HGGGGGSTTEEEEEE--CSSCEEEEESS-CCCHHHHHHHHHHTTEECCCB----------TTEEEECCCTTC----CHHH
T ss_pred HHHHhcCCCeeeeec--CCeEEEEEECC-cccHHHHHHHHHHCCeEEEec----------CCEEEEECCCCC----CHHH
Confidence 8764 2322221 23466777754 346778888888889999752 268999875543 4899
Q ss_pred HHHHHHHHHHHHHH
Q 012104 405 FEQIGEFLHRAVTL 418 (471)
Q Consensus 405 ~~~l~~~i~~~l~~ 418 (471)
++++.+.|.++++.
T Consensus 439 i~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 439 ITQITSAMVEVARL 452 (457)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 211
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.80 E-value=2.3e-17 Score=169.91 Aligned_cols=328 Identities=13% Similarity=0.003 Sum_probs=187.0
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~---- 119 (471)
+|.|++++...+.+.. ..++..++ ..+...++ .++++++++.+.+ -.+.++||++|+.+++.++..
T Consensus 69 ~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~l----a~~l~~~~~~~~~---~v~~~~gGseA~~~al~~~~~~~~~ 138 (460)
T 3gju_A 69 RQKIADAIATQAKNLA-YYHAYVGH--GTEASITL----AKMIIDRAPKGMS---RVYFGLSGSDANETNIKLIWYYNNV 138 (460)
T ss_dssp CHHHHHHHHHHHHHHS-CCCCCTTC--CCHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-cccccccc--CCHHHHHH----HHHHHhhCCCCcC---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 6999999887764421 11211111 11222222 3667777765443 235578899999999988863
Q ss_pred ----CCCEEEEeCCCCCCcccccccccCCccc-----eeccceeEEEeeee--cCCCCCCC--------HHHHHHHhhh-
Q 012104 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKKI-----SATSIYFESLPYKV--NSSTGYID--------YDKLEEKALD- 179 (471)
Q Consensus 120 ----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~-----~~~g~~~~~~~~~v--~~~~~~iD--------~~~le~~~~~- 179 (471)
++|+|++.++.|.|+.. +.....|... ......+..++++. ...+..+| +++|++++.+
T Consensus 139 ~g~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~ 217 (460)
T 3gju_A 139 LGRPEKKKIISRWRGYHGSGV-MTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE 217 (460)
T ss_dssp TTCTTCCEEEEETTCCCCSSH-HHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcCCCCH-HHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc
Confidence 56999999998866431 1000000000 00011123333221 10111233 6889988864
Q ss_pred --CCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-CC-CC-CccEEEeCCCCcCCC
Q 012104 180 --FRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NP-FE-YCHIVTTTTHKSLRG 248 (471)
Q Consensus 180 --~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p-~~-~aDiv~~s~~K~l~G 248 (471)
.++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|... .. +. ..|+++ ++|+|.|
T Consensus 218 ~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pdi~t--~sK~l~g 294 (460)
T 3gju_A 218 GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-GFGRLGTMFGSDHYGIKPDLIT--IAKGLTS 294 (460)
T ss_dssp CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEE--ECGGGTT
T ss_pred CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeee--eehhhcC
Confidence 345778877 344555555 8999999999999999999997 653333211 00 11 356775 4599877
Q ss_pred --CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhh------c-CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 012104 249 --PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF------A-VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (471)
Q Consensus 249 --prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~------~-~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~ 319 (471)
+|.|++++++ ++.+.+.. . ...+..++ +....++..++++.+.. +++.+++.
T Consensus 295 G~~~lg~v~~~~---------------~i~~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~ 355 (460)
T 3gju_A 295 AYAPLSGVIVAD---------------RVWQVLVQGSDKLGSLGHGWTYSA-HPICVAAGVANLELIDE---MDLVTNAG 355 (460)
T ss_dssp TSSCCEEEEEEH---------------HHHHHHHHHHHHHCSCSCCCTTTT-CHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred CCCCeEEEEECH---------------HHHHHHhcccccccccccCCCCCC-CHHHHHHHHHHHHHHHh---ccHHHHHH
Confidence 6889999987 55555532 1 11122222 33333444446664422 23445555
Q ss_pred HHHHHHHHHH----HcCC-ceEeeCCCCCeeEEEEccCCCC----------CHHHHHHHHhhcCeEeccCCcCCCCCCCC
Q 012104 320 ANAVALGNYL----TGKG-YSLVTGGTENHLVLWDLRPLGL----------TGNKVEKLCDLCNITVNKNAVFGDSSALA 384 (471)
Q Consensus 320 ~na~~l~~~L----~~~g-~~i~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~ 384 (471)
++.+++++.| .+.+ +..+. +. ..++++++..... ...++.+.|.+.||.+.+.. .
T Consensus 356 ~~~~~~~~~l~~~l~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~ 425 (460)
T 3gju_A 356 ETGAYFRAELAKAVGGHKNVGEVR-GD-GMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------Q 425 (460)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEE-EE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------S
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEe-ee-eEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------C
Confidence 5555555555 3333 22222 22 2355666542210 14567788888899987642 1
Q ss_pred CCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 385 PGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 385 ~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+.+||+.+... ++++++++.+.|.++++.
T Consensus 426 ~~~iRi~~~~~~----t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 426 GDILGFAPPLCL----TREQADIVVSKTADAVKS 455 (460)
T ss_dssp SCEEEECCCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 378999876544 479999999999988764
No 212
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.80 E-value=2.2e-17 Score=169.44 Aligned_cols=319 Identities=13% Similarity=0.030 Sum_probs=181.3
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.|.+++...+... ..++ ..+ +..+....+ .++++++++...+ -.+.++||++|+.+++.++..
T Consensus 61 ~~p~v~~A~~~~~~~~-~~~~-~~~--~~~~~~~~l----a~~l~~~~~~~~~---~v~~~~sGseA~~~al~~~~~~~~ 129 (448)
T 3dod_A 61 RKKELDDAIKKQLGKI-AHST-LLG--MTNVPATQL----AETLIDISPKKLT---RVFYSDSGAEAMEIALKMAFQYWK 129 (448)
T ss_dssp SCHHHHHHHHHHHTTC-SCCC-CSS--SEEHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-cCcc-ccc--cCCHHHHHH----HHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 3799999998777432 1111 111 112222222 3677788864432 245678899999999988865
Q ss_pred -CC----CEEEEeCCCCCCcccccccccCCccceeccce----------eEEEeeeecCCCCC-----------CCHHHH
Q 012104 120 -PH----DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY----------FESLPYKVNSSTGY-----------IDYDKL 173 (471)
Q Consensus 120 -pG----D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~----------~~~~~~~v~~~~~~-----------iD~~~l 173 (471)
+| |+|++.++.|.|+.. +. +...+.. ..+..++.+ ..+. .|+++|
T Consensus 130 ~~G~~~~~~vi~~~~~yhg~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~l 200 (448)
T 3dod_A 130 NIGKPEKQKFIAMKNGYHGDTI-GA-------VSVGSIELFHHVYGPLMFESYKAPIP-YVYRSESGDPDECRDQCLREL 200 (448)
T ss_dssp HTTCTTCCEEEEEC-------------------------------------CEEECCC-CCTTSSSCCHHHHHHHHHHHH
T ss_pred hhCCCCCCEEEEECCCCCCccH-HH-------HHhcCCccccccccCCCCCceEeCCC-ccccCCccchhhhhHHHHHHH
Confidence 55 999999998865432 11 1111110 011111111 1111 258999
Q ss_pred HHHhhh--CCCcEEEEcC---CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-CC-CC-CccEEEeC
Q 012104 174 EEKALD--FRPKLIICGG---SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NP-FE-YCHIVTTT 241 (471)
Q Consensus 174 e~~~~~--~~pklIi~~~---s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p-~~-~aDiv~~s 241 (471)
++++.. .++++|++.+ ++.|...+ +++|+++|+++|++||+|++|. |+...|... .. +. ..|+++
T Consensus 201 e~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t-- 277 (448)
T 3dod_A 201 AQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-GFGRTGKMFACEHENVQPDLMA-- 277 (448)
T ss_dssp HHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEE--
T ss_pred HHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-CCCcccchhhhhhcCCCCCEEE--
Confidence 998872 3456777663 56665655 8999999999999999999997 654333221 11 11 356765
Q ss_pred CCCcCC-C-CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhh-------cCCCCCCCCCcHHHHHHHHHHHHHhccHHHH
Q 012104 242 THKSLR-G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF-------AVFPSLQGGPHNHQIGALAVALKQASTPAFK 312 (471)
Q Consensus 242 ~~K~l~-G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~-------~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~ 312 (471)
++|++. | .+.|++++++ ++.+.+.. ....+..++ +...+++..++++.+.. +
T Consensus 278 ~sK~l~~G~~~ig~v~~~~---------------~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~ 338 (448)
T 3dod_A 278 AGKGITGGYLPIAVTFATE---------------DIYKAFYDDYENLKTFFHGHSYTG-NQLGCAVALENLALFES---E 338 (448)
T ss_dssp ECGGGGTTSSCCEEEEEEH---------------HHHHTTCSCGGGCCCCCCCCTTTT-CHHHHHHHHHHHHHHHH---T
T ss_pred ecccccCCcCceEEEEECH---------------HHHHHhhhccccCCcccccCCCCc-CHHHHHHHHHHHHHHhc---c
Confidence 459974 4 3889999887 45555543 111122222 33333444446654422 2
Q ss_pred HHHHHHHHHHHHHHHHHHc---CC-ceEeeCCCCCeeEEEEccCCCCC----------HHHHHHHHhhcCeEeccCCcCC
Q 012104 313 AYAKQVKANAVALGNYLTG---KG-YSLVTGGTENHLVLWDLRPLGLT----------GNKVEKLCDLCNITVNKNAVFG 378 (471)
Q Consensus 313 ~~~~~~~~na~~l~~~L~~---~g-~~i~~~~~~~~~~~v~~~~~~~~----------~~~~~~~L~~~gI~v~~~~~p~ 378 (471)
++.+++.++.+++++.|.+ .+ +..+. + ...++++++.....+ ..++.+.|.+.||.+.++
T Consensus 339 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~---- 412 (448)
T 3dod_A 339 NIVEQVAEKSKKLHFLLQDLHALPHVGDIR-Q-LGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL---- 412 (448)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSTTEEEEE-E-ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-e-eeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc----
Confidence 3455666666666666654 22 22211 1 233567776432111 356777788889999653
Q ss_pred CCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 379 DSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 379 ~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+.+||+.+... ++++++++.+.|.+++...
T Consensus 413 ------~~~iRi~~~~~~----t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 413 ------GDVIAFLPPLAS----TAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp ------TTEEEECCCTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred ------CCEEEEECCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 268999865443 4899999999999887643
No 213
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.80 E-value=7.9e-18 Score=172.91 Aligned_cols=315 Identities=11% Similarity=0.028 Sum_probs=187.2
Q ss_pred CcHHHH-H-HHhh---hhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcC-CCCCCCceeeecCChHHHHHHHHHH
Q 012104 43 TSFAVI-E-ALGS---ALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFH-LDPTQWGVNVQPYSGSPANFAAYTA 116 (471)
Q Consensus 43 ~s~~v~-~-a~~~---~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg-~~~~~~~~~v~~~sGt~A~~~~~~a 116 (471)
.+|.|+ + |+.. .+.... +.+.+| ..+...++ .++++++++ .+.+ -.+.++||++|+.+++..
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~~~---~~~~~~--~~~~~~~l----a~~la~~~~~~~~~---~v~~~~~gseA~~~aik~ 138 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAALNK---PSNSDV--YSVAMARF----VETFARVLGDPALP---HLFFVEGGALAVENALKA 138 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHTCC---CCTTTC--CCHHHHHH----HHHHHHHHCCTTCC---EEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcC---CCCccc--CCHHHHHH----HHHHHHhcCCCCCC---EEEEeCchHHHHHHHHHH
Confidence 479999 8 8877 443321 111122 12222222 356778886 3332 245577899999998875
Q ss_pred hc---C----------C-CCEEEEeCCCCCCcccccccccCCccceeccc------ee-----EEEeeeecCC-CC----
Q 012104 117 VL---E----------P-HDRIMGLDLPSGGHLTHGYYTSGGKKISATSI------YF-----ESLPYKVNSS-TG---- 166 (471)
Q Consensus 117 ll---~----------p-GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~------~~-----~~~~~~v~~~-~~---- 166 (471)
+. + | ||+|+++++.|.|+.. +. +...+. .+ .++.++.+.. ..
T Consensus 139 a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 210 (449)
T 2cjg_A 139 AFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSG-YT-------LSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAM 210 (449)
T ss_dssp HHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSST-TG-------GGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHH
T ss_pred HHHHhcccccccccccCCCCEEEEECCCcCCccc-ch-------hhhcCCchhhcccCCCCCCCcEEEcCCCchhhcccc
Confidence 42 2 2 9999999998866532 11 111111 01 2233332210 01
Q ss_pred ----CCCHHHHHHHhhh--CCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCC--CC
Q 012104 167 ----YIDYDKLEEKALD--FRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PF 232 (471)
Q Consensus 167 ----~iD~~~le~~~~~--~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~--p~ 232 (471)
..|+++|++++.+ .++++|+++ ++++|...+ +++|+++|+++|++||+|++|. |+...|.... .+
T Consensus 211 ~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~ 289 (449)
T 2cjg_A 211 AALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQL 289 (449)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHH
T ss_pred chhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeeccc
Confidence 2566779988863 357888887 356786666 8899999999999999999998 6544333111 01
Q ss_pred C-CccEEEeCCCCcCCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhh-----hcCCCCCCCCCcHHHHHHHHHHHHHh
Q 012104 233 E-YCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKIN-----FAVFPSLQGGPHNHQIGALAVALKQA 306 (471)
Q Consensus 233 ~-~aDiv~~s~~K~l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~-----~~~~~~~~g~p~~~~iaa~a~al~~~ 306 (471)
. ..|+++ ++|++ +.|+++++++ +.+.+. .....+..+ ++...+++..++++.+
T Consensus 290 ~~~~di~t--~sK~l---~iG~~~~~~~---------------~~~~l~~~~~~~~~~~~t~~-~n~~~~~aa~aal~~~ 348 (449)
T 2cjg_A 290 DVAPDIVA--FGKKT---QVCGVMAGRR---------------VDEVADNVFAVPSRLNSTWG-GNLTDMVRARRILEVI 348 (449)
T ss_dssp TCCCSEEE--ECGGG---SSEEEEECGG---------------GGGSTTCTTTSTTSSCCSSS-SCHHHHHHHHHHHHHH
T ss_pred CCCceEEE--ecCcc---cEEEEEECHH---------------HhhhhhhcccCCcccccCCC-CCHHHHHHHHHHHHHH
Confidence 1 357775 55998 5778878763 333211 111112222 2333444444567654
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcC-----C-ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCC
Q 012104 307 STPAFKAYAKQVKANAVALGNYLTGK-----G-YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDS 380 (471)
Q Consensus 307 ~~~~~~~~~~~~~~na~~l~~~L~~~-----g-~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~ 380 (471)
.+ +++.+++.++.++|.+.|++. + +..+. +. ..++++++... .+..++.+.|.++||.+.++
T Consensus 349 ~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~~-g~~~~~~~~~~-~~~~~~~~~l~~~Gv~v~~~------ 416 (449)
T 2cjg_A 349 EA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPR-GR-GLMCAFSLPTT-ADRDELIRQLWQRAVIVLPA------ 416 (449)
T ss_dssp HH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-EE-TTEEEEECSSH-HHHHHHHHHHHHTTEECEEE------
T ss_pred Hh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-ec-cEEEEEEECCh-HHHHHHHHHHHHCCeEEecC------
Confidence 33 245567777888888888753 2 33332 22 33566777531 13456777777899999763
Q ss_pred CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 381 SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 381 ~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
..+.+||+++..+ ++++++++.+.|.++++.
T Consensus 417 ---g~~~iRi~~~~~~----t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 417 ---GADTVRFRPPLTV----STAEIDAAIAAVRSALPV 447 (449)
T ss_dssp ---TTTEEEECCCTTC----CHHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 1378999875444 489999999999887753
No 214
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.79 E-value=1.2e-18 Score=175.73 Aligned_cols=255 Identities=13% Similarity=0.053 Sum_probs=165.3
Q ss_pred eeecCCh-HHHHHHHHHHhcCCCC----EEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHH
Q 012104 100 NVQPYSG-SPANFAAYTAVLEPHD----RIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLE 174 (471)
Q Consensus 100 ~v~~~sG-t~A~~~~~~all~pGD----~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le 174 (471)
+|..++| ++|+.+++.++++||| +|++.+|.|.++.. .+...|. +++.+++|.+. ++
T Consensus 93 ~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~---------~~~~~g~--~~~~~~~d~~~--l~----- 154 (391)
T 3bwn_A 93 YIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVE---------ETTYVRS--GMYKWEGDAWG--FD----- 154 (391)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHH---------HHHTTCB--TTEEEEEESTT--CC-----
T ss_pred eEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHH---------HHHHcCC--eEEEecCCHHH--cC-----
Confidence 3445555 4799999999999999 99999999987642 1223343 34455556332 22
Q ss_pred HHhhhCCCcEEE-Ec-CCCCCccccHHHHHHHHHH-hC--CEEEEeccccchhhccccCCCCCC---CccEEEeCCCCc-
Q 012104 175 EKALDFRPKLII-CG-GSAYPRDWDYARFRAVADK-CG--ALLLCDMAHISGLVAAQEAANPFE---YCHIVTTTTHKS- 245 (471)
Q Consensus 175 ~~~~~~~pklIi-~~-~s~~g~~~d~~~i~~ia~~-~g--~~livD~a~~~glv~~g~~~~p~~---~aDiv~~s~~K~- 245 (471)
..++|+|+ ++ +||+|..++ +| |++ ++ ++||+|++|..+ . ..++. ..+|+++|+||+
T Consensus 155 ----~~~~k~v~l~~p~NPtG~~~~--~l---~~~~~~~~~~ii~De~y~~~-----~-~~~l~~~~~~~i~~~S~SK~~ 219 (391)
T 3bwn_A 155 ----KKGPYIELVTSPNNPDGTIRE--TV---VNRPDDDEAKVIHDFAYYWP-----H-YTPITRRQDHDIMLFTFSKIT 219 (391)
T ss_dssp ----CCSCEEEEEESSCTTTCCCCC--CC---C-----CCCEEEEECTTCST-----T-TSCCCCCBCCSEEEEEHHHHH
T ss_pred ----CCCCEEEEECCCCCCCchhHH--HH---HHHhhcCCCEEEEeCCCCCC-----C-CCccccCCCCeEEEEechhhc
Confidence 14688886 44 789999886 44 434 55 999999999621 1 12332 456999999999
Q ss_pred -CCCCCeEEEEe-eCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc---------cHHHHHH
Q 012104 246 -LRGPRAGMIFY-RKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS---------TPAFKAY 314 (471)
Q Consensus 246 -l~GprgG~i~~-~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~---------~~~~~~~ 314 (471)
++|.|.||+++ ++ ++.+.+........ .+++.....+.+.+++... ...+++.
T Consensus 220 g~~GlRiG~~~~~~~---------------~l~~~l~~~~~~~~-~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~ 283 (391)
T 3bwn_A 220 GHAGSRIGWALVKDK---------------EVAKKMVEYIIVNS-IGVSKESQVRTAKILNVLKETCKSESESENFFKYG 283 (391)
T ss_dssp SCGGGCEEEEEECCH---------------HHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHH
T ss_pred CCCccceEEEEecCH---------------HHHHHHHHHhcccc-cCCCHHHHHHHHHHHhCcchhccccccHHHHHHHH
Confidence 47889999987 54 45554443221111 1233333444445565431 2356777
Q ss_pred HHHHHHHHHHHHHHHHcC-CceEeeC-C-----------CCCeeEEEEccCCCCCHHHHHHHHhhcCeEeccCCcCCCCC
Q 012104 315 AKQVKANAVALGNYLTGK-GYSLVTG-G-----------TENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSS 381 (471)
Q Consensus 315 ~~~~~~na~~l~~~L~~~-g~~i~~~-~-----------~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~~~~p~~~~ 381 (471)
.+.+.++.+.+.+.|++. |+++... + ....++|+++.. .+.+.+.|+++||.+.++..++.
T Consensus 284 ~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~----~~~~~~~l~~~gV~v~pg~~fg~-- 357 (391)
T 3bwn_A 284 REMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE----ETDLVSELRRHKVMSRAGERCGS-- 357 (391)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESS----SCCHHHHHHHTTEECEEGGGGTC--
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCc----HHHHHHHHHHCCEEEccCCCCCC--
Confidence 888888999999999987 6655321 1 112367888753 23577888999999999876652
Q ss_pred CCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 382 ALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 382 ~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
..+++||++. + ++++++++.+.|.++++
T Consensus 358 --~~~~iRis~~--~----~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 358 --DKKHVRVSML--S----REDVFNVFLERLANMKL 385 (391)
T ss_dssp --CTTEEEEESC--S----CHHHHHHHHHHHHSCC-
T ss_pred --CCCEEEEEec--C----CHHHHHHHHHHHHHHHH
Confidence 2578999984 2 47889999988877654
No 215
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.79 E-value=5.7e-17 Score=165.55 Aligned_cols=315 Identities=11% Similarity=0.045 Sum_probs=183.7
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--C
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--P 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--p 120 (471)
.+|.|.+++...+.+....+++. +...+ + .++++++++ ..+ -.+.++||++|+.+++..+.. +
T Consensus 72 ~~p~v~~a~~~~~~~~~~~~~~~-------~~~~~---l-~~~la~~~~-~~~---~v~~~~sGsea~~~ai~~a~~~~~ 136 (434)
T 3l44_A 72 AHPHITKAITTAAENGVLYGTPT-------ALEVK---F-AKMLKEAMP-ALD---KVRFVNSGTEAVMTTIRVARAYTG 136 (434)
T ss_dssp TCHHHHHHHHHHHHHCSCCSSCC-------HHHHH---H-HHHHHHHCT-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcCCCCCC-------HHHHH---H-HHHHHHhCC-CCC---EEEEeCchHHHHHHHHHHHHHhhC
Confidence 37999999988775532222221 22222 2 356777776 322 245678899999999987754 7
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCC-------C----CCCCHHHHHHHhhh--CCCcEEEE
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSS-------T----GYIDYDKLEEKALD--FRPKLIIC 187 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~-------~----~~iD~~~le~~~~~--~~pklIi~ 187 (471)
+|+|++.++.|.|+... .+...+........+.... + ...|+++|++++.+ .++++|++
T Consensus 137 ~~~vi~~~~~yhg~~~~--------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ 208 (434)
T 3l44_A 137 RTKIMKFAGCYHGHSDL--------VLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILV 208 (434)
T ss_dssp CCEEEEETTCCCCSSGG--------GGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCEEEEEcCccCCCcHH--------HHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEE
Confidence 89999999888664321 1111221110000000000 0 01289999998874 24567777
Q ss_pred cC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcC-CCCCeEEEEee
Q 012104 188 GG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSL-RGPRAGMIFYR 257 (471)
Q Consensus 188 ~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l-~GprgG~i~~~ 257 (471)
++ ++.|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|+++ ++|++ +|+|.|+++++
T Consensus 209 ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~~~ 284 (434)
T 3l44_A 209 EPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF-RFMYGGAQDLLGVTPDLTA--LGKVIGGGLPIGAYGGK 284 (434)
T ss_dssp CSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT-TSSSSCHHHHHTCCCSEEE--EEGGGGTTSSCEEEEEC
T ss_pred cCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce-eccccHHHHHcCCCCCeee--hhhhhcCCcCeeeEEEc
Confidence 63 34566666 8999999999999999999996 66 333211 0011 346665 55986 45688999887
Q ss_pred CCCCCCCCCCCCCcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc----
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG---- 331 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~---- 331 (471)
+ ++.+.+... .+.+...+++...+++..++++.+.. +++.+++.++.+++++.|++
T Consensus 285 ~---------------~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 346 (434)
T 3l44_A 285 K---------------EIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ---EGLYEKLDELGATLEKGILEQAAK 346 (434)
T ss_dssp H---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 455444431 11111112333344444456665543 34556666677777776655
Q ss_pred CCceEeeCCCCCeeEEEEccCCCC------------CHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcC
Q 012104 332 KGYSLVTGGTENHLVLWDLRPLGL------------TGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRG 399 (471)
Q Consensus 332 ~g~~i~~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g 399 (471)
.++.....+ ...++++.+....+ ...++.+.|.+.||.+.++. ...+|+++ .
T Consensus 347 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~rl~~--~---- 410 (434)
T 3l44_A 347 HNIDITLNR-LKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK---------YEAWFLTT--E---- 410 (434)
T ss_dssp TTCCEEEEE-ETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSST---------TCCEECCT--T----
T ss_pred CCCCEEEEe-eccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecC---------CCcEEEec--c----
Confidence 343211112 23355666532221 12456777888899997641 24688853 2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 012104 400 LLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 400 ~~~~d~~~l~~~i~~~l~~ 418 (471)
.++++++++.+.|.+++..
T Consensus 411 ~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 411 HTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 3589999999999988764
No 216
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.79 E-value=6.7e-17 Score=166.01 Aligned_cols=328 Identities=13% Similarity=0.034 Sum_probs=189.2
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL----- 118 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all----- 118 (471)
+|.|.+++...+.... +... ....+...+ ..++++++++.+.+ .+.++||++|+.+++.++.
T Consensus 67 ~p~v~~A~~~~~~~~~---~~~~--~~~~~~~~~----la~~l~~~~~~~~~----v~~~~ggseA~~~al~~~~~~~~~ 133 (452)
T 3n5m_A 67 RKELAEAAYKQLQTLS---YFPM--SQSHEPAIK----LAEKLNEWLGGEYV----IFFSNSGSEANETAFKIARQYYAQ 133 (452)
T ss_dssp CHHHHHHHHHHHTTCC---CCCT--TSEEHHHHH----HHHHHHHHHTSCEE----EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcC---Cccc--ccCCHHHHH----HHHHHHHhCCCCce----EEEeCchHHHHHHHHHHHHHHHHh
Confidence 6999999987774321 1111 111222222 23667788876542 3557889999999999887
Q ss_pred C---CCCEEEEeCCCCCCcccccccccCCcccee-----ccceeEEEeeeecCCCCCCC---------HHHHHHHhh---
Q 012104 119 E---PHDRIMGLDLPSGGHLTHGYYTSGGKKISA-----TSIYFESLPYKVNSSTGYID---------YDKLEEKAL--- 178 (471)
Q Consensus 119 ~---pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~-----~g~~~~~~~~~v~~~~~~iD---------~~~le~~~~--- 178 (471)
. ++|+|++.++.|.|+.. +.....|..... .......++.+.......-| +++|+++++
T Consensus 134 ~g~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~ 212 (452)
T 3n5m_A 134 KGEPHRYKFMSRYRGYHGNTM-ATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWEL 212 (452)
T ss_dssp TTCTTCCEEEEETTCCCCSSH-HHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCCcCCCCH-HHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcC
Confidence 5 88999999998866431 100000000000 00011111111000001112 899999887
Q ss_pred hCCCcEEEEc---CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-CC-CC-CccEEEeCCCCcCC-
Q 012104 179 DFRPKLIICG---GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NP-FE-YCHIVTTTTHKSLR- 247 (471)
Q Consensus 179 ~~~pklIi~~---~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p-~~-~aDiv~~s~~K~l~- 247 (471)
..++++|++. +| +|...+ +++|+++|+++|++||+|++|. |+...|... .. .. ..|+++ ++|++.
T Consensus 213 ~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t--~sK~l~~ 288 (452)
T 3n5m_A 213 SETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVIC-GFGRTGKAFGFMNYDVKPDIIT--MAKGITS 288 (452)
T ss_dssp GGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEE--ECGGGGT
T ss_pred CCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcccccchhhhcCCCCCEEe--ecccccC
Confidence 2356777776 35 787776 8999999999999999999997 654333211 11 11 356775 559853
Q ss_pred C-CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhh----cC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 012104 248 G-PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF----AV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (471)
Q Consensus 248 G-prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~----~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~ 320 (471)
| +|.|++++++ ++.+.+.. .. ..+..++ +...+++..++++.+.. +++.+++.+
T Consensus 289 G~~~ig~~~~~~---------------~i~~~~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~ 349 (452)
T 3n5m_A 289 AYLPLSATAVKR---------------EIYEAFKGKGEYEFFRHINTFGG-NPAACALALKNLEIIEN---ENLIERSAQ 349 (452)
T ss_dssp TSSCCEEEEEEH---------------HHHGGGCSSSTTCSCCCCCSSTT-CHHHHHHHHHHHHHHHH---TTHHHHHHH
T ss_pred CCcceEEEEECH---------------HHHHHHhhccCCCCccccCCCCC-CHHHHHHHHHHHHHHHh---ccHHHHHHH
Confidence 5 6779999887 55555532 11 1122222 33333333345654422 345566667
Q ss_pred HHHHHHHHHHcC----C-ceEeeCCCCCeeEEEEccCCC-----CC---HHHHHHHHhhcCeEeccCCcCCCCCCCCCCe
Q 012104 321 NAVALGNYLTGK----G-YSLVTGGTENHLVLWDLRPLG-----LT---GNKVEKLCDLCNITVNKNAVFGDSSALAPGG 387 (471)
Q Consensus 321 na~~l~~~L~~~----g-~~i~~~~~~~~~~~v~~~~~~-----~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~ 387 (471)
+.+++++.|++. + +..+. +.+ .++++++.... .+ ..++.+.|.+.||.+.+...|. +...+.
T Consensus 350 ~~~~l~~~L~~~~~~~~~~~~~~-~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---~~~~~~ 424 (452)
T 3n5m_A 350 MGSLLLEQLKEEIGEHPLVGDIR-GKG-LLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---AGYNNI 424 (452)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEE-ESS-SCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---TTCCCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE-EEE-EEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---CCCCCE
Confidence 777777777543 2 22222 222 34455552211 11 2356777888999998865432 123579
Q ss_pred eEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 388 VRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 388 iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+||+++..+ ++++++++.+.|.++++
T Consensus 425 iRi~~~~~~----t~e~i~~~l~~l~~~l~ 450 (452)
T 3n5m_A 425 LTLAPPLVI----SSEEIAFVIGTLKTAME 450 (452)
T ss_dssp EEECCCTTC----CHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCC----CHHHHHHHHHHHHHHHH
Confidence 999876554 48999999999988764
No 217
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.79 E-value=5.7e-17 Score=165.22 Aligned_cols=307 Identities=13% Similarity=0.027 Sum_probs=181.7
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh--cCC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEP 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al--l~p 120 (471)
.+|.|.+++...+......++ ..+...+ ..++++++++ +.+ -.+.++||++|+.+++... ...
T Consensus 69 ~~p~v~~a~~~~~~~~~~~~~-------~~~~~~~----la~~l~~~~~-~~~---~v~~~~ggsea~~~al~~a~~~~~ 133 (427)
T 3fq8_A 69 AHPEVIEALKVAMEKGTSFGA-------PCALENV----LAEMVNDAVP-SIE---MVRFVNSGTEACMAVLRIMRAYTG 133 (427)
T ss_dssp TCHHHHHHHHHHHTTCSCCSS-------CCHHHHH----HHHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCcCC-------CCHHHHH----HHHHHHHhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 489999999877643211111 1122222 2356778886 332 2466788999999988433 234
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceeccceeE-----------------EEeeeecCCCCCCCHHHHHHHhhhC--C
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE-----------------SLPYKVNSSTGYIDYDKLEEKALDF--R 181 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~-----------------~~~~~v~~~~~~iD~~~le~~~~~~--~ 181 (471)
+++|++.++.|.|..... ....+.... ++.++ .-|+++|+++++++ +
T Consensus 134 ~~~vi~~~~~yhg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~ 199 (427)
T 3fq8_A 134 RDKIIKFEGCYHGHADMF--------LVKAGSGVATLGLPSSPGVPKKTTANTLTTP------YNDLEAVKALFAENPGE 199 (427)
T ss_dssp CCEEEEEETCCCCSCGGG--------CSSCCTHHHHHTCCSCSSSCHHHHTTEEEEE------TTCHHHHHHHHHHSTTT
T ss_pred CCEEEEECCCcCCCCHHH--------HHhcCCcccccCCCCCCCCCCcccCceeecC------CCCHHHHHHHHHhCCCC
Confidence 588999988876543211 111111100 11111 12899999999764 5
Q ss_pred CcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCe
Q 012104 182 PKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRA 251 (471)
Q Consensus 182 pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-Gprg 251 (471)
+++|++. +++.|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++++ +|++. |.|.
T Consensus 200 ~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t~--sK~~~~G~~~ 275 (427)
T 3fq8_A 200 IAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLTTL--GKIIGGGLPV 275 (427)
T ss_dssp EEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEEEE--CGGGGTTSSC
T ss_pred EEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChhhh--hhhhhCCcce
Confidence 6788876 345677777 9999999999999999999997 76 333211 0111 3466654 59974 5688
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhc---CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFA---VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNY 328 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~---~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~ 328 (471)
|++++++ ++.+.+... ...+.. +++...+++...+++.+.. +++.+++.++.+++++.
T Consensus 276 G~~~~~~---------------~~~~~~~~~~~~~~~~t~-~~~~~~~aa~~aal~~~~~---~~~~~~~~~~~~~~~~~ 336 (427)
T 3fq8_A 276 GAYGGKR---------------EIMQLVAPAGPMYQAGTL-SGNPLAMTAGIKTLELLRQ---PGTYEYLDQITKRLSDG 336 (427)
T ss_dssp EEEEECH---------------HHHTTBTTTSSBCCCCTT-TTCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHH
T ss_pred EEEEEcH---------------HHHHhhccCCCccccCCC-CcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHH
Confidence 9998876 455444431 111111 2234444444456665543 24556666666676666
Q ss_pred HHcC----CceEeeCCCCCeeEEEEccCCCCC------------HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEec
Q 012104 329 LTGK----GYSLVTGGTENHLVLWDLRPLGLT------------GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGT 392 (471)
Q Consensus 329 L~~~----g~~i~~~~~~~~~~~v~~~~~~~~------------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~ 392 (471)
|++. ++..... ....++++++...... ..++.+.|.+.||.+.++. ...+|++
T Consensus 337 l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~---------~~r~~~~- 405 (427)
T 3fq8_A 337 LLAIAQETGHAACGG-QVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ---------FEAGFTS- 405 (427)
T ss_dssp HHHHHHHTTCCCEEE-EETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------TSCEECC-
T ss_pred HHHHHHhCCCCeEEE-EeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCC---------CCCEEee-
Confidence 6542 3322111 1234667776543222 3467777888999997642 1234443
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 393 PAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 393 ~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
.. .++++++++.+.|.++++
T Consensus 406 -~~----~t~e~i~~~l~~l~~~l~ 425 (427)
T 3fq8_A 406 -LA----HTEEDIDATLAAARTVMS 425 (427)
T ss_dssp -TT----CCHHHHHHHHHHHHHHHH
T ss_pred -Cc----CCHHHHHHHHHHHHHHHH
Confidence 23 358999999999988775
No 218
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.79 E-value=9.6e-18 Score=167.33 Aligned_cols=309 Identities=12% Similarity=0.081 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcCC---C-CEEEEeCCCCCCcccccccccCCccceeccc
Q 012104 77 EIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEP---H-DRIMGLDLPSGGHLTHGYYTSGGKKISATSI 152 (471)
Q Consensus 77 ~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~p---G-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~ 152 (471)
.-|.++.++++++ |.+... ..+.+.++|.++++++.+.+++ | |.|+++...|.+.+ +.+.+.|.
T Consensus 117 ltn~l~ld~L~~~-G~~~~~--~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~---------kAliL~Gl 184 (501)
T 3hl2_A 117 ITNSLVLDIIKLA-GVHTVA--NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF---------KSMITAGF 184 (501)
T ss_dssp HHHHHHHHHHHHT-TCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH---------HHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCCCCC--cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHH---------HHHHHcCC
Confidence 4466788888877 988632 2333445566777777777764 4 99999885543332 23445665
Q ss_pred eeEEEeeeecCCCCCCCHHHHHHHhhhCCCc--EEEEc-CCCC-C-ccccHHHHHHHHHHhCCEEEEeccccchhhcccc
Q 012104 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPK--LIICG-GSAY-P-RDWDYARFRAVADKCGALLLCDMAHISGLVAAQE 227 (471)
Q Consensus 153 ~~~~~~~~v~~~~~~iD~~~le~~~~~~~pk--lIi~~-~s~~-g-~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~ 227 (471)
....++-.++++...+|+++++++++++.++ ++++. .+.| | ...|+++|+++|+++|+++++|+||++.+.+...
T Consensus 185 ~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~ 264 (501)
T 3hl2_A 185 EPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMH 264 (501)
T ss_dssp EEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHH
T ss_pred eEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhh
Confidence 5554444445556789999999999876433 33333 4444 3 4479999999999999999999999865533221
Q ss_pred CC-CCCC-C-ccEEEeCCCCcCCCCCeE-EEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHH
Q 012104 228 AA-NPFE-Y-CHIVTTTTHKSLRGPRAG-MIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAL 303 (471)
Q Consensus 228 ~~-~p~~-~-aDiv~~s~~K~l~GprgG-~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al 303 (471)
.| +.+. + +|+++.|+||++..|-|| +++++++ ++.+++.. .+|+.+++ ...+.+.+++
T Consensus 265 lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~--------------e~l~~~~~-~yPGr~S~---Spsldl~~tL 326 (501)
T 3hl2_A 265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFND--------------SFIQEISK-MYPGRASA---SPSLDVLITL 326 (501)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCH--------------HHHHHHHH-TSCSCBCS---HHHHHHHHHH
T ss_pred hHHHHHhcCCCcEEEecccccceeecCceEEEeCCH--------------HHHHHHHH-hCCCCCCC---cHHHHHHHHH
Confidence 11 2233 4 999999999998788665 4445653 55555543 45665532 2233344556
Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHcC----CceEeeCCCCCee-EEEEccCCC----CCHHHHHHHHhhcCeE----
Q 012104 304 KQASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENHL-VLWDLRPLG----LTGNKVEKLCDLCNIT---- 370 (471)
Q Consensus 304 ~~~~~~~~~~~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~~-~~v~~~~~~----~~~~~~~~~L~~~gI~---- 370 (471)
..+...+|++..++..+++++|++.|++. |-+++. ...|.+ +-+.+...+ -+..++-..|-.++|.
T Consensus 327 L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~-~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rv 405 (501)
T 3hl2_A 327 LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLH-TPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV 405 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCC-CTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcC-CCCCceeEEEecccccccccccHHHHHHHHHhcCCCccee
Confidence 66666789999999999999999999873 656652 222333 344554321 1234555666566554
Q ss_pred eccCC----------cCCCC-CCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Q 012104 371 VNKNA----------VFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL 420 (471)
Q Consensus 371 v~~~~----------~p~~~-~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~ 420 (471)
|.++. -+|.. ..+...++-+. +..|++.+|++.+.+.|++++....
T Consensus 406 v~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a----~aiG~~~~~v~~~~~~l~~~~~~~~ 462 (501)
T 3hl2_A 406 VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAA----SAIGMKMQDVDLFIKRLDRCLKAVR 462 (501)
T ss_dssp ECTTCCEEETTEEESSTTTTSSCCSSCEEEEE----CCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCceEECCeeecCcccCCCCCCchHHHHH----HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 22221 11211 22223455543 3568999999999999999997654
No 219
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.79 E-value=9.3e-18 Score=171.49 Aligned_cols=315 Identities=17% Similarity=0.079 Sum_probs=186.2
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc-CCCCCCCceeeecCChHHHHHHHHHHh--cC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-HLDPTQWGVNVQPYSGSPANFAAYTAV--LE 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf-g~~~~~~~~~v~~~sGt~A~~~~~~al--l~ 119 (471)
.+|.|.+++...+.+....++ ..+...+ ..+++++++ +.+ -.+.++||++|+.+++.+. +.
T Consensus 73 ~~~~v~~a~~~~~~~~~~~~~-------~~~~~~~----l~~~la~~~~~~~-----~v~~~~sgseA~~~al~~ar~~~ 136 (434)
T 2epj_A 73 KHPRVLEAVEEALARGWLYGA-------PGEAEVL----LAEKILGYVKRGG-----MIRFVNSGTEATMTAIRLARGYT 136 (434)
T ss_dssp TCHHHHHHHHHHHHTCSCCSS-------CCHHHHH----HHHHHHHHHCTTC-----EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCC-------CCHHHHH----HHHHHHHhCCCCC-----EEEEeCCHHHHHHHHHHHHHHhh
Confidence 579999999887755221111 1122222 336677787 433 2456788999999998872 34
Q ss_pred CCCEEEEeCCCCCCcccccccccCCccc------eeccce----eEEEeeeecCCCCCCCHHHHHHHhhh--CCCcEEEE
Q 012104 120 PHDRIMGLDLPSGGHLTHGYYTSGGKKI------SATSIY----FESLPYKVNSSTGYIDYDKLEEKALD--FRPKLIIC 187 (471)
Q Consensus 120 pGD~Vl~~~~~~~g~~s~~~~~~~g~~~------~~~g~~----~~~~~~~v~~~~~~iD~~~le~~~~~--~~pklIi~ 187 (471)
++|.|++.++.|.|+.. +.....|... ...|.. ..++.++ ..|+++|++++++ .++++|++
T Consensus 137 ~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le~~l~~~~~~~~~vi~ 209 (434)
T 2epj_A 137 GRDLILKFDGCYHGSHD-AVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTP------YNDVEALERVFAEYGDRIAGVIV 209 (434)
T ss_dssp CCCEEEEEETCCCCSSG-GGSEECC------CEESSTTCCHHHHTTEEEEE------TTCHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCeEEEEcCCcCCCCH-HHHHhcCCCccccCCCCCCCCCCcccCceEecC------CCCHHHHHHHHHhCCCCEEEEEE
Confidence 56788888888766432 1000000000 001110 0122221 2489999999875 35778888
Q ss_pred cC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCCC-CCeEEEEee
Q 012104 188 GG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG-PRAGMIFYR 257 (471)
Q Consensus 188 ~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~G-prgG~i~~~ 257 (471)
++ +++|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++ |++|++.+ .++|+++++
T Consensus 210 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~ 285 (434)
T 2epj_A 210 EPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF-RLGLEGAQGYFNIEGDII--VLGKIIGGGFPVGAVAGS 285 (434)
T ss_dssp CSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT-TSSTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEEC
T ss_pred eCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce-eCCcchhhHHhCCCCCee--eecchhcCCcceeeeeec
Confidence 73 45788888 9999999999999999999998 76 222210 0011 35776 55699754 588999988
Q ss_pred CCCCCCCCCCCCCcccchHhhhhh-c-CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC---
Q 012104 258 KGPKPPKKGQPEGAVYDFEDKINF-A-VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK--- 332 (471)
Q Consensus 258 ~~~~~~~~~~~~i~~~~l~~~i~~-~-~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~--- 332 (471)
+ ++.+.+.. . .+.+..-+.+...+++...+++.+.+ +++.+++.++.++|.+.|++.
T Consensus 286 ~---------------~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 347 (434)
T 2epj_A 286 R---------------EVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE---EPVYSVSREAAKALEEAASEVLDR 347 (434)
T ss_dssp H---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---------------HHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHhh
Confidence 6 44444433 1 11111112233344444455655422 345667777778888877653
Q ss_pred -CceEeeCCCCCeeEEEEccCCC------------CCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcC
Q 012104 333 -GYSLVTGGTENHLVLWDLRPLG------------LTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRG 399 (471)
Q Consensus 333 -g~~i~~~~~~~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g 399 (471)
++.....+ ...++++++.... .+..++.+.|.++||.+.++. ...+|+++ .
T Consensus 348 ~~~~~~~~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~~~--~---- 411 (434)
T 2epj_A 348 TGLPYTINR-VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSN---------LEAVFTGL--P---- 411 (434)
T ss_dssp HTCCEEEEE-ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------TSCEECCT--T----
T ss_pred CCCcEEEEE-eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccC---------CCcEEEec--c----
Confidence 55321112 2346778775311 124567777888999997642 12356542 2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 012104 400 LLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 400 ~~~~d~~~l~~~i~~~l~~ 418 (471)
.++++++++.+.|.++++.
T Consensus 412 ~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 412 HQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4589999999999888764
No 220
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.78 E-value=1.8e-17 Score=170.76 Aligned_cols=326 Identities=14% Similarity=0.049 Sum_probs=187.1
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~---- 119 (471)
+|.|++|+...+.+.. .+++..++ ..+.... ..++++++++.+.+ -.+.++||++|+.+++.++.+
T Consensus 68 ~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~----la~~l~~~~~~~~~---~v~~~~ggseA~~~al~~~~~~~~~ 137 (459)
T 4a6r_A 68 RKDFAEAARRQMEELP-FYNTFFKT--THPAVVE----LSSLLAEVTPAGFD---RVFYTNSGSESVDTMIRMVRRYWDV 137 (459)
T ss_dssp CHHHHHHHHHHHHHCS-CCCTTSSS--CCHHHHH----HHHHHHHHSCTTCC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-cccccccc--CCHHHHH----HHHHHHHhCCCCCC---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 6999999988775421 12222111 1222222 23677888876543 245577899999999998875
Q ss_pred ----CCCEEEEeCCCCCCcccccccccCCccc-----eeccceeEEEeeee--cCCCCCCC--------HHHHHHHhhh-
Q 012104 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKKI-----SATSIYFESLPYKV--NSSTGYID--------YDKLEEKALD- 179 (471)
Q Consensus 120 ----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~-----~~~g~~~~~~~~~v--~~~~~~iD--------~~~le~~~~~- 179 (471)
++|+|++.++.|.|+.. +.....+... ......+..++++. +...+ +| +++|++++.+
T Consensus 138 ~g~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~ 215 (459)
T 4a6r_A 138 QGKPEKKTLIGRWNGYHGSTI-GGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEI 215 (459)
T ss_dssp TTCTTCCEEEEETTCCCCSSH-HHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcCCccH-HHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHc
Confidence 57999999998866531 1000000000 00001122233221 10112 45 7889998864
Q ss_pred --CCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-CC-CC-CccEEEeCCCCcCCC
Q 012104 180 --FRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-NP-FE-YCHIVTTTTHKSLRG 248 (471)
Q Consensus 180 --~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~p-~~-~aDiv~~s~~K~l~G 248 (471)
.++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|... .. +. ..|++++ +|+|.|
T Consensus 216 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~pdi~t~--sK~l~g 292 (459)
T 4a6r_A 216 GADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-GFGRTGEWFGHQHFGFQPDLFTA--AKGLSS 292 (459)
T ss_dssp CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGGT
T ss_pred CCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcccccchHhhcCCCCCeeeh--hhhhcC
Confidence 345677776 334555565 8999999999999999999997 654333211 00 11 3577765 599866
Q ss_pred --CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-CC--CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH
Q 012104 249 --PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-VF--PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK-ANA 322 (471)
Q Consensus 249 --prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-~~--~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~-~na 322 (471)
.|.|++++++ ++.+.+... .+ .+..++ +....++..++++.+.. +++.+++. ++.
T Consensus 293 g~~~lg~v~~~~---------------~i~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~ 353 (459)
T 4a6r_A 293 GYLPIGAVFVGK---------------RVAEGLIAGGDFNHGFTYSG-HPVCAAVAHANVAALRD---EGIVQRVKDDIG 353 (459)
T ss_dssp TSSCCEEEEECH---------------HHHHHHHHHCTTHHHHHHCS-CHHHHHHHHHHHHHHHH---TCHHHHHHHTHH
T ss_pred CCCCccceeeCH---------------HHHHHhhcCCCcccCCCCCC-CHHHHHHHHHHHHHHhc---chHHHHHHHHHH
Confidence 6889999887 455555411 00 011122 22333333345654422 23445555 555
Q ss_pred HHHHHHH----HcCC-ceEeeCCCCCeeEEEEccCCCCC----------HHHHHHHHhhcCeEeccCCcCCCCCCCCCCe
Q 012104 323 VALGNYL----TGKG-YSLVTGGTENHLVLWDLRPLGLT----------GNKVEKLCDLCNITVNKNAVFGDSSALAPGG 387 (471)
Q Consensus 323 ~~l~~~L----~~~g-~~i~~~~~~~~~~~v~~~~~~~~----------~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~ 387 (471)
+++++.| .+.+ +..+. +.. .++++++.....+ ..++.+.|.+.||.+.+. .+.
T Consensus 354 ~~~~~~l~~~l~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g~~ 421 (459)
T 4a6r_A 354 PYMQKRWRETFSRFEHVDDVR-GVG-MVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----------GDH 421 (459)
T ss_dssp HHHHHHHHHHHTTCTTEEEEE-EET-TEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----------TTE
T ss_pred HHHHHHHHHHHhcCCCeEEEE-EEE-EEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC----------CCE
Confidence 5666555 3332 33322 222 3555665421111 456777788889999763 168
Q ss_pred eEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 388 VRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 388 iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+||+.+..+ ++++++++.+.|.+++...
T Consensus 422 iRi~~~~~~----t~e~i~~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 422 IVSAPPLVM----TRAEVDEMLAVAERCLEEF 449 (459)
T ss_dssp EEECCCTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 999876554 4799999999999888654
No 221
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.78 E-value=5e-18 Score=171.54 Aligned_cols=309 Identities=9% Similarity=0.052 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC----CCCEEEEeCCCCCCcccccccccCCccceec
Q 012104 75 IDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE----PHDRIMGLDLPSGGHLTHGYYTSGGKKISAT 150 (471)
Q Consensus 75 ~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~ 150 (471)
...+|+....++.+++|.+... ..+.++++|.++.+++.+.++ +|+.|++++-.|.+.. +.+.+.
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~--~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~---------kAl~l~ 164 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCF---------KSMVTA 164 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHH---------HHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCCc--eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHH---------HHHHHc
Confidence 4467777778888999998642 223344555344444444434 3899998875443222 234456
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCC---CcEEEEcCCCCC--ccccHHHHHHHHHHhCCEEEEeccccchhhcc
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFR---PKLIICGGSAYP--RDWDYARFRAVADKCGALLLCDMAHISGLVAA 225 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~---pklIi~~~s~~g--~~~d~~~i~~ia~~~g~~livD~a~~~glv~~ 225 (471)
|.....+....+.+.+.+|++.|+++++++. +-+|+++.+.+| ...|+++|+++|+++|++++||+||++.+...
T Consensus 165 Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~ 244 (450)
T 3bc8_A 165 GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC 244 (450)
T ss_dssp TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence 6654444333333568899999999998753 234445566665 67899999999999999999999997543321
Q ss_pred ccCC-CCC--CCccEEEeCCCCcCCCCCe-EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCC-CCcHHHHHHHH
Q 012104 226 QEAA-NPF--EYCHIVTTTTHKSLRGPRA-GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQG-GPHNHQIGALA 300 (471)
Q Consensus 226 g~~~-~p~--~~aDiv~~s~~K~l~Gprg-G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g-~p~~~~iaa~a 300 (471)
...+ +.+ .++|+++.|+|||++.|-+ ++++++++ ++.+++... +++.++ +|. ..++
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~--------------~~~~~~~~~-~~g~~s~Sps----L~l~ 305 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE--------------PFIQDISKM-YPGRASASPS----LDVL 305 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCH--------------HHHHHHHHH-SCSCBCSHHH----HHHH
T ss_pred HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCH--------------HHHHHHHHH-hhcCCcccHH----HHHH
Confidence 1111 223 4799999999999989865 56665553 444445433 444332 232 2333
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC----CceEeeCCCCCe-eEEEEccCC----CCCHHHHHHHHhhcCe--
Q 012104 301 VALKQASTPAFKAYAKQVKANAVALGNYLTGK----GYSLVTGGTENH-LVLWDLRPL----GLTGNKVEKLCDLCNI-- 369 (471)
Q Consensus 301 ~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~----g~~i~~~~~~~~-~~~v~~~~~----~~~~~~~~~~L~~~gI-- 369 (471)
.++......++.+..++..++++++++.|++. |++++.. ..+. -..+++... ..|...+.-.+...|+
T Consensus 306 ~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~-~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG 384 (450)
T 3bc8_A 306 ITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQT-PHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSG 384 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCC-TTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCC-ccCCCcceeecccccccccCCCceeEEEecCCCCcc
Confidence 34444444567777788889999999988653 6766532 2121 122333211 2234444444444442
Q ss_pred -EeccC--------Cc---CCCCCC-CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 370 -TVNKN--------AV---FGDSSA-LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 370 -~v~~~--------~~---p~~~~~-~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.+.+. .. ++-... ....++=+ +++.|.+++|++++.+.|.++...
T Consensus 385 ~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~----~~sig~~~~di~~l~~~L~~~~~~ 442 (450)
T 3bc8_A 385 ARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNA----AAAIGMKMQDVDLFIKRLDKCLNI 442 (450)
T ss_dssp CEEECSCCEEEETTEEEETTTTTSSCCSSCEEEE----ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceeeecccccchhHHHHHHcCCeeecCCCCcEEE----EecCCCCHHHHHHHHHHHHHHHHH
Confidence 22100 00 010000 11233333 456788899999999999988654
No 222
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.78 E-value=2.6e-16 Score=162.70 Aligned_cols=327 Identities=12% Similarity=0.012 Sum_probs=192.5
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC---
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--- 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--- 119 (471)
.+|.|.+|+...+.. +..+++. . +..+...++ .++++++++.+.+ -.+.++||++|+..++..+.+
T Consensus 71 ~~p~v~~A~~~~l~~-~~~~~~~-~--~~~~~~~~l----a~~l~~~~~~~~~---~v~~~~sGseA~~~Aik~a~~~~~ 139 (476)
T 3i5t_A 71 GRREIVDAMAHQAMV-LPYASPW-Y--MATSPAARL----AEKIATLTPGDLN---RIFFTTGGSTAVDSALRFSEFYNN 139 (476)
T ss_dssp CCHHHHHHHHHHHHH-CCCCCTT-T--CBCHHHHHH----HHHHHTTSSTTCC---EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh-ccCcccC-c--cCCHHHHHH----HHHHHhcCCCCcC---EEEEeCchHHHHHHHHHHHHHHHH
Confidence 479999999887754 2222221 1 112332223 3678888865443 235578999999999988753
Q ss_pred -----CCCEEEEeCCCCCCcccccccccCCccce-----eccceeEEEeeeecCCCCCCC--------HHHHHHHhhh--
Q 012104 120 -----PHDRIMGLDLPSGGHLTHGYYTSGGKKIS-----ATSIYFESLPYKVNSSTGYID--------YDKLEEKALD-- 179 (471)
Q Consensus 120 -----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~-----~~g~~~~~~~~~v~~~~~~iD--------~~~le~~~~~-- 179 (471)
.+++|++.++.|.|+.. +.....|.... .....+..++++........| +++|++++.+
T Consensus 140 ~~g~~~~~~vi~~~~~yHg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~ 218 (476)
T 3i5t_A 140 VLGRPQKKRIIVRYDGYHGSTA-LTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG 218 (476)
T ss_dssp HTTCTTCCEEEEETTCCCCSSH-HHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCCCCCEEEEEcCCcCcCCh-hhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC
Confidence 36799999998866531 11000000000 000112223322110111122 7899998864
Q ss_pred -CCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--C-CCC-CccEEEeCCCCcCCC
Q 012104 180 -FRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--N-PFE-YCHIVTTTTHKSLRG 248 (471)
Q Consensus 180 -~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~-p~~-~aDiv~~s~~K~l~G 248 (471)
.++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|... . -+. ..|++++ +|+|.|
T Consensus 219 ~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~--sK~l~~ 295 (476)
T 3i5t_A 219 PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-GFGRCGEWFASEKVFGVVPDIITF--AKGVTS 295 (476)
T ss_dssp GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEE--CGGGGT
T ss_pred CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccccCceeeecccCCCcchhhh--hhhhcC
Confidence 345677776 344565454 8999999999999999999997 654334221 1 112 3578765 499865
Q ss_pred --CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-------CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 012104 249 --PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-------VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVK 319 (471)
Q Consensus 249 --prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-------~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~ 319 (471)
.+.|++++++ ++.+.+... ...+..++ +....+|..++++.+.. +++.+++.
T Consensus 296 G~~plg~v~~~~---------------~i~~~~~~~~~~~~~~~~~~t~~~-np~a~aAa~aaL~~~~~---~~~~~~~~ 356 (476)
T 3i5t_A 296 GYVPLGGLAISE---------------AVLARISGENAKGSWFTNGYTYSN-QPVACAAALANIELMER---EGIVDQAR 356 (476)
T ss_dssp TSSCCEEEEECH---------------HHHHTTSGGGCTTCEECCCCTTTT-CHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred CCcCeEEEEECH---------------HHHHHHhcCCcccccccccCCCCc-CHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 6779998877 455555432 11122223 33334444446665432 35667778
Q ss_pred HHHHHHHHHHHcCC----ceEeeCCCCCeeEEEEccCCCC----------CHHHHHHHHhhcCeEeccCCcCCCCCCCCC
Q 012104 320 ANAVALGNYLTGKG----YSLVTGGTENHLVLWDLRPLGL----------TGNKVEKLCDLCNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 320 ~na~~l~~~L~~~g----~~i~~~~~~~~~~~v~~~~~~~----------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~ 385 (471)
++.+++++.|++++ +..+. +. ..++++++..... ....+.+.|.+.||.+.+. .
T Consensus 357 ~~~~~l~~~L~~l~~~~~v~~v~-~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------g 424 (476)
T 3i5t_A 357 EMADYFAAALASLRDLPGVAETR-SV-GLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL----------G 424 (476)
T ss_dssp HHHHHHHHHHHTTTTSTTEEEEE-EE-TTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE----------T
T ss_pred HHHHHHHHHHHHHhcCCCeEEEE-ec-CceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec----------C
Confidence 88888888887642 22222 22 2355666643211 1345667777889999752 1
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
+.+||+.+..+ ++++++++.+.|.++++..
T Consensus 425 ~~iRi~p~l~~----t~e~i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 425 DLCVISPPLII----SRAQIDEMVAIMRQAITEV 454 (476)
T ss_dssp TEEEECCCTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 68999865544 4899999999999988754
No 223
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.77 E-value=3.2e-17 Score=168.48 Aligned_cols=313 Identities=12% Similarity=0.032 Sum_probs=178.4
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHH---hcC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTA---VLE 119 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~a---ll~ 119 (471)
.+|.|.+++...+......++ ...++....+++++.++ ..+ -.+.++||++|+.+++.+ +.+
T Consensus 74 ~~~~v~~a~~~~~~~~~~~~~-----------~~~~~~~la~~l~~~~~-~~~---~v~~~~gg~eA~~~al~~ar~~~~ 138 (453)
T 2cy8_A 74 GHPRVNAAIAEALSHGVQYAA-----------SHPLEVRWAERIVAAFP-SIR---KLRFTGSGTETTLLALRVARAFTG 138 (453)
T ss_dssp TCHHHHHHHHHHHTTTCSSCS-----------SCHHHHHHHHHHHHHCT-TCS---EEEEESCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCCC-----------CCHHHHHHHHHHHhhCC-CCC---EEEEeCCHHHHHHHHHHHHHHhhC
Confidence 579999999887744211111 11333344567777775 332 245578899999999887 555
Q ss_pred CCCEEEEeCCCCCCcccccccccCCcc---ceecccee----EEEeeeecCCCCCCCHHHHHHHhhh--CCCcEEEEcC-
Q 012104 120 PHDRIMGLDLPSGGHLTHGYYTSGGKK---ISATSIYF----ESLPYKVNSSTGYIDYDKLEEKALD--FRPKLIICGG- 189 (471)
Q Consensus 120 pGD~Vl~~~~~~~g~~s~~~~~~~g~~---~~~~g~~~----~~~~~~v~~~~~~iD~~~le~~~~~--~~pklIi~~~- 189 (471)
+|.|++.++.|.|+..... ...|.. ....|... .++.+ . ..|+++|++++.+ .++++|++++
T Consensus 139 -~~~vi~~~~~yhg~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~--~----~~d~~~le~~l~~~~~~~~~vi~ep~ 210 (453)
T 2cy8_A 139 -RRMILRFEGHYHGWHDFSA-SGYNSHFDGQPAPGVLPETTANTLLI--R----PDDIEGMREVFANHGSDIAAFIAEPV 210 (453)
T ss_dssp -CCEEEEECC-----------------------------CGGGEEEE--C----TTCHHHHHHHHHHHGGGEEEEEECSS
T ss_pred -CCEEEEEcCCcCCCchhhH-hhcCCccCCCcCCCCCccccCceeec--C----CCCHHHHHHHHHhcCCCEEEEEECCC
Confidence 4688888888765432100 000000 00011100 11111 1 2589999999874 3567888874
Q ss_pred -CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCeEEEEeeCCC
Q 012104 190 -SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRKGP 260 (471)
Q Consensus 190 -s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-GprgG~i~~~~~~ 260 (471)
+++|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++ |++|++. |+++|++++++
T Consensus 211 ~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~-- 284 (453)
T 2cy8_A 211 GSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF-RVGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGRE-- 284 (453)
T ss_dssp EHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECH--
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc-ccCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechH--
Confidence 34687777 8999999999999999999997 77 323210 0111 35766 5669976 56899999987
Q ss_pred CCCCCCCCCCcccchHhhhhh---c-CCCCCCCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHcC---
Q 012104 261 KPPKKGQPEGAVYDFEDKINF---A-VFPSLQGGPHNHQIGALAVALKQ-ASTPAFKAYAKQVKANAVALGNYLTGK--- 332 (471)
Q Consensus 261 ~~~~~~~~~i~~~~l~~~i~~---~-~~~~~~g~p~~~~iaa~a~al~~-~~~~~~~~~~~~~~~na~~l~~~L~~~--- 332 (471)
++.+.+.. . .+.+...+++...+++...+++. + . +++.+++.++.+++.+.|++.
T Consensus 285 -------------~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~ 347 (453)
T 2cy8_A 285 -------------DVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E---DDVCAKINDLGQFAREAMNHLFAR 347 (453)
T ss_dssp -------------HHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444432 1 01111112233344444456665 4 2 234566677777777777653
Q ss_pred -CceEeeCCCCCeeEEEEccC-----C-------------CCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecC
Q 012104 333 -GYSLVTGGTENHLVLWDLRP-----L-------------GLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTP 393 (471)
Q Consensus 333 -g~~i~~~~~~~~~~~v~~~~-----~-------------~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~ 393 (471)
++.....+. ..++|+++.. . ..+..++.+.|.++||.+.+ + +.+|+++
T Consensus 348 ~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~----~-------~~~~l~~- 414 (453)
T 2cy8_A 348 KGLNWLAYGR-FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGG----R-------GSVFLSA- 414 (453)
T ss_dssp TTCCEEEECC-TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBT----T-------TEEECCT-
T ss_pred CCCcEEEEEe-eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeC----C-------CCEEeec-
Confidence 442211222 3467888753 1 01245677777788999842 1 2366532
Q ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 394 AMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 394 ~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
. .++++++++.+.|.++++..
T Consensus 415 -~----~t~~~i~~~l~~l~~~l~~~ 435 (453)
T 2cy8_A 415 -Q----HEREHVEHLVTTFDRVLDRL 435 (453)
T ss_dssp -T----CCHHHHHHHHHHHHHHHHHH
T ss_pred -c----CCHHHHHHHHHHHHHHHHHH
Confidence 2 45899999999999887653
No 224
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.77 E-value=2.6e-17 Score=167.69 Aligned_cols=322 Identities=15% Similarity=0.057 Sum_probs=187.0
Q ss_pred CeeEecCC--CC---CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChH
Q 012104 33 GIELIASE--NF---TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGS 107 (471)
Q Consensus 33 ~i~li~s~--n~---~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt 107 (471)
.|++..+. +. .+|.|.+++...+.+....+++ .+...+ ..++++++++ ..+ -.+.++||+
T Consensus 54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~----l~~~l~~~~~-~~~---~v~~~~~g~ 118 (424)
T 2e7u_A 54 YLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAP-------SPLEVA----LAKKVKRAYP-FVD---LVRFVNSGT 118 (424)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSC-------CHHHHH----HHHHHHHHCT-TCC---EEEEESSHH
T ss_pred EEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCC-------CHHHHH----HHHHHHHhCC-CCC---EEEEeCCHH
Confidence 45665553 22 4799999998877542111111 122222 3366778885 222 235577899
Q ss_pred HHHHHHHHH---hcCCCCEEEEeCCCCCCcccccccccCCccc------eeccce----eEEEeeeecCCCCCCCHHHHH
Q 012104 108 PANFAAYTA---VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKI------SATSIY----FESLPYKVNSSTGYIDYDKLE 174 (471)
Q Consensus 108 ~A~~~~~~a---ll~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~------~~~g~~----~~~~~~~v~~~~~~iD~~~le 174 (471)
+|+.+++.. +. ++|.|++.++.|.|+... .....|... ...|.. ..++.++ ..|+++|+
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~-~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~------~~d~~~le 190 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADG-LLVEAGSGALTLGVPSSAGVPEEYAKLTLVLE------YNDPEGLR 190 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGG-GSEECCSSSCCBCEESSTTCCHHHHTTEEEEC------TTCHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHH-HHHhcCCcccccCCCCCCCCCCccCCceEeCC------CCCHHHHH
Confidence 999998885 44 458888999888664321 000000000 001110 0122221 25899999
Q ss_pred HHhhh--CCCcEEEEcC--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCC
Q 012104 175 EKALD--FRPKLIICGG--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTH 243 (471)
Q Consensus 175 ~~~~~--~~pklIi~~~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~ 243 (471)
+.+.+ .++++|++++ +++|...+ +++|+++ +++|++||+|++|. |+ ..|... ..+. ..|++ |++
T Consensus 191 ~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~di~--s~s 265 (424)
T 2e7u_A 191 EVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF-RLAFGGATELLGLKPDLV--TLG 265 (424)
T ss_dssp HHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EEC
T ss_pred HHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc-ccchhHHHHHhCCCcchh--hhh
Confidence 98864 3567888873 23687777 8999999 99999999999998 77 323210 0011 35766 667
Q ss_pred CcCC-CCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhh-c-CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 012104 244 KSLR-GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINF-A-VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (471)
Q Consensus 244 K~l~-GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~-~-~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~ 320 (471)
|++. |.++|++++++ ++.+.+.. . .+.+..-+.+...+++..++++.+.. .+++.+++.+
T Consensus 266 K~l~~G~~~G~~~~~~---------------~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~ 328 (424)
T 2e7u_A 266 KILGGGLPAAAYAGRR---------------EIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLED 328 (424)
T ss_dssp GGGGTTSSCEEEEECH---------------HHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHH
T ss_pred hhhhCCcceEEEEEcH---------------HHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 9975 45889999887 45554443 1 11111112233334444445654422 1346677777
Q ss_pred HHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCC------------CCHHHHHHHHhhcCeEeccCCcCCCCCCCC
Q 012104 321 NAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLG------------LTGNKVEKLCDLCNITVNKNAVFGDSSALA 384 (471)
Q Consensus 321 na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~ 384 (471)
+.+++.+.|++. ++.....+. ..++|+++...+ .+..++.+.|.++||.+.++.
T Consensus 329 ~~~~l~~~L~~~~~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------- 398 (424)
T 2e7u_A 329 LGARLEAGLKEVLKEKGLPHTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSN--------- 398 (424)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSS---------
T ss_pred HHHHHHHHHHHHHHhCCCceEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccC---------
Confidence 888888887653 543111122 346788875411 123457777778999997642
Q ss_pred CCeeEEecCCCCCcCCCHHHHHHHHHHHHHH
Q 012104 385 PGGVRIGTPAMTSRGLLEKDFEQIGEFLHRA 415 (471)
Q Consensus 385 ~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~ 415 (471)
...+|+++ . .++++++++.+.|.++
T Consensus 399 ~~~~~~~~--~----~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 399 FEAAFLSV--A----HREEDVEKTLEALRKA 423 (424)
T ss_dssp SSCEECCT--T----CCHHHHHHHHHHHHHH
T ss_pred CCceEeec--c----CCHHHHHHHHHHHHHh
Confidence 12366542 2 3589999999998765
No 225
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.76 E-value=1.7e-16 Score=161.94 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=183.9
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--C
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--P 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--p 120 (471)
.+|.|.+|+...+.+....++| .+...++ .++++++++ ..+ -.+.++||++|+..++..+.. +
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~-------~~~~~~l----~~~la~~~~-~~~---~v~~~~~Gsea~~~ai~~a~~~~~ 134 (429)
T 3k28_A 70 ANDRVVEALKAVAERGTSFGAP-------TEIENKL----AKLVIERVP-SIE---IVRMVNSGTEATMSALRLARGYTG 134 (429)
T ss_dssp SCHHHHHHHHHHHHHCSCCSSC-------CHHHHHH----HHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhCcCcCCC-------CHHHHHH----HHHHHHhCC-CCC---EEEEeCChHHHHHHHHHHHHHhhC
Confidence 4899999998877543221222 1222222 356777775 222 245678899999999987753 6
Q ss_pred CCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCC-------------CCCHHHHHHHhhh--CCCcEE
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTG-------------YIDYDKLEEKALD--FRPKLI 185 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~-------------~iD~~~le~~~~~--~~pklI 185 (471)
+++|++.++.|.|..... +...+.......++. ..+ .-|++++++++.+ .++++|
T Consensus 135 ~~~vi~~~~~yhg~~~~~--------~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~v 204 (429)
T 3k28_A 135 RNKILKFIGCYHGHGDSL--------LIKAGSGVATLGLPD--SPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACV 204 (429)
T ss_dssp CCEEEEEETCCCCSCGGG--------CSSCCTTC-----CC--CTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEE
T ss_pred CCEEEEECCCcCCCcHHH--------HHhcCCcccccCCCC--cCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEE
Confidence 789999998876543211 111121111111100 001 1289999998874 245677
Q ss_pred EEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCeEEEE
Q 012104 186 ICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIF 255 (471)
Q Consensus 186 i~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-GprgG~i~ 255 (471)
++. +++.|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|+++ ++|++. |+|.|+++
T Consensus 205 i~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~t--~sK~~~~G~~iG~~~ 280 (429)
T 3k28_A 205 IVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF-RVAYNCGQGYYGVTPDLTC--LGKVIGGGLPVGAYG 280 (429)
T ss_dssp EECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEEE--ECGGGGTTSCCEEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchHHHHhCCCCceeh--hhhhhcCCCCeEEEE
Confidence 776 334566677 8999999999999999999996 76 333211 0011 346665 569964 56889998
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhc--CCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC-
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFA--VFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK- 332 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~--~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~- 332 (471)
+++ ++.+.+... .+.+...+++...+++..++++... ++..+++.++.+++.+.|++.
T Consensus 281 ~~~---------------~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~ 341 (429)
T 3k28_A 281 GKA---------------EIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAA 341 (429)
T ss_dssp ECH---------------HHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EcH---------------HHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 887 454444321 1111111233344444445666543 456677777778887777653
Q ss_pred ---Cc-eEeeCCCCCeeEEEEccCCCC------------CHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCC
Q 012104 333 ---GY-SLVTGGTENHLVLWDLRPLGL------------TGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMT 396 (471)
Q Consensus 333 ---g~-~i~~~~~~~~~~~v~~~~~~~------------~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t 396 (471)
++ ..+. +. ..++++.+..... ...++.+.|.+.||.+.++. .+.+|+++ .
T Consensus 342 ~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~r~~~--~- 407 (429)
T 3k28_A 342 EKHGIPHHIN-RA-GSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ---------FEGLFLST--V- 407 (429)
T ss_dssp HHTTCCCEEE-EE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------TSCBCCCT--T-
T ss_pred hhCCCCEEEE-ee-ccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC---------CCCEEEEC--C-
Confidence 32 1111 12 2345565532211 12556777888999997631 24688753 2
Q ss_pred CcCCCHHHHHHHHHHHHHHHHH
Q 012104 397 SRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 397 ~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
.++++++++.+.|.+++..
T Consensus 408 ---~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 408 ---HSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp ---CCHHHHHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHHHHHHHHHHH
Confidence 3489999999999888753
No 226
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.76 E-value=1.2e-16 Score=165.00 Aligned_cols=319 Identities=13% Similarity=0.048 Sum_probs=190.4
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE---- 119 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~---- 119 (471)
+|.|.+|+...+.... ..+...+| ..+...++ .++++++++.+.+ -.+.++||++|+.+++..+..
T Consensus 73 ~p~v~~A~~~~~~~~~-~~~~~~~~--~~~~~~~l----ae~l~~~~~~~~~---~v~~~~sGseA~~~aik~a~~~~~~ 142 (472)
T 3hmu_A 73 RDELAEVAARQMRELP-YYNTFFKT--THVPAIAL----AQKLAELAPGDLN---HVFFAGGGSEANDTNIRMVRTYWQN 142 (472)
T ss_dssp CHHHHHHHHHHHHHCS-CCCSSSSE--ECHHHHHH----HHHHHHHSCTTEE---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-cccccccc--CCHHHHHH----HHHHHHhCCCCCC---EEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 7999999987775421 12221111 11222222 3667788865432 235577899999999988764
Q ss_pred ----CCCEEEEeCCCCCCcccccccccCCccceeccc-----------eeEEEeeee--cCCCCCCC--------HHHHH
Q 012104 120 ----PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSI-----------YFESLPYKV--NSSTGYID--------YDKLE 174 (471)
Q Consensus 120 ----pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~-----------~~~~~~~~v--~~~~~~iD--------~~~le 174 (471)
++++|++.++.|.|+.. +. +...+. .+..++++. +..++ .| +++|+
T Consensus 143 ~g~~~~~~ii~~~~~yHg~t~-~~-------~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le 213 (472)
T 3hmu_A 143 KGQPEKTVIISRKNAYHGSTV-AS-------SALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELE 213 (472)
T ss_dssp TTCTTCCEEEEETTCCCCSSH-HH-------HHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEEcCcCCCccH-Hh-------hhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHH
Confidence 57899999988865421 10 111111 122233221 10111 34 78898
Q ss_pred HHhhh---CCCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC-C-CCC-CccEEEeCC
Q 012104 175 EKALD---FRPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA-N-PFE-YCHIVTTTT 242 (471)
Q Consensus 175 ~~~~~---~~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~-~-p~~-~aDiv~~s~ 242 (471)
+++.+ .++++|++. +++.|...+ +++|+++|+++|++||+|++|. |+...|... . .+. ..|++++
T Consensus 214 ~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-gfgr~G~~~a~~~~~v~pdi~t~-- 290 (472)
T 3hmu_A 214 EAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-GFGRTGNWFGTQTMGIRPHIMTI-- 290 (472)
T ss_dssp HHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSCHHHHHTCCCSEEEE--
T ss_pred HHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-CCcccCccchhHHhCCCCceeee--
Confidence 88864 345677776 345566666 8999999999999999999997 653333211 0 011 3578765
Q ss_pred CCcCCC--CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHH
Q 012104 243 HKSLRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQV 318 (471)
Q Consensus 243 ~K~l~G--prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~ 318 (471)
+|+|.| .+.|++++++ ++.+.++... ..+..++ +....+|..++++.+.. +++.+++
T Consensus 291 sK~l~gg~~plG~v~~~~---------------~i~~~~~~~~~~~~~t~~~-np~a~aAa~aaL~~~~~---~~~~~~~ 351 (472)
T 3hmu_A 291 AKGLSSGYAPIGGSIVCD---------------EVAHVIGKDEFNHGYTYSG-HPVAAAVALENLRILEE---ENILDHV 351 (472)
T ss_dssp CGGGTTTSSCCEEEEEEH---------------HHHHHHTTSCBCCCCTTTT-CHHHHHHHHHHHHHHHH---TTHHHHH
T ss_pred chhhhcCCcceEEEEECH---------------HHHHhcccCCccccCCCCC-CHHHHHHHHHHHHHHHH---hHHHHHH
Confidence 599876 6889999887 5555553221 1112222 23333333345655422 3456667
Q ss_pred H-HHHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCCC-------C----HHHHHHHHhhcCeEeccCCcCCCCCC
Q 012104 319 K-ANAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLGL-------T----GNKVEKLCDLCNITVNKNAVFGDSSA 382 (471)
Q Consensus 319 ~-~na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~~-------~----~~~~~~~L~~~gI~v~~~~~p~~~~~ 382 (471)
. ++.+++++.|+++ ++..+. +. ..++.+++..... + ...+.+.|.+.||.+.+.
T Consensus 352 ~~~~~~~l~~~L~~l~~~~~v~~vr-~~-G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------- 421 (472)
T 3hmu_A 352 RNVAAPYLKEKWEALTDHPLVGEAK-IV-GMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV-------- 421 (472)
T ss_dssp HHTHHHHHHHHHHGGGGSTTEEEEE-EE-TTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE--------
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEE-ec-CceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec--------
Confidence 7 7778888888654 122222 22 2355566543110 0 456777788889998753
Q ss_pred CCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 383 LAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 383 ~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+.+||+.+... ++++++++.+.|.++++..
T Consensus 422 --g~~iRi~p~~~~----t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 422 --GDRMIISPPLVI----TPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp --TTEEEECCCTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCC----CHHHHHHHHHHHHHHHHHH
Confidence 168999876554 4899999999999988654
No 227
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.75 E-value=2.8e-18 Score=175.16 Aligned_cols=321 Identities=12% Similarity=0.026 Sum_probs=192.4
Q ss_pred CCeeEecCCCCC--cHHHHHHHhhhhhccCCC--CCCCCCCCCcchhHHHHHHHHHHHHHHhcC--CCCCCCceeeecCC
Q 012104 32 RGIELIASENFT--SFAVIEALGSALTNKYSE--GMPGNRYYGGNEFIDEIENLCRSRALQTFH--LDPTQWGVNVQPYS 105 (471)
Q Consensus 32 ~~i~li~s~n~~--s~~v~~a~~~~l~~~~~~--g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg--~~~~~~~~~v~~~s 105 (471)
..|+|..+++.. ++.+++++...+...-.. +|+... .|......+++...+++.+..+ ++.+ -.+.+++
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~--~G~~~~~~lr~aia~~~~~~~~~~~~~~---~iv~t~G 131 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNP--VSNFISFELEKTIKELHEVVGNAAAKDR---YIVFGVG 131 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSS--CCTTCCHHHHHHHHHHHHHHTCBCCTTC---EEEEESH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCC--CCccchHHHHHHHHHHHHHhCCcCCCCC---EEEEeCC
Confidence 457777776643 356677776555221111 133221 0211134555444444444333 3332 1233444
Q ss_pred hHHHHHHHHHHh--------cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHh
Q 012104 106 GSPANFAAYTAV--------LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKA 177 (471)
Q Consensus 106 Gt~A~~~~~~al--------l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~ 177 (471)
+++|+.+++.++ ++|||+|++.+|.|.++.. .+...|. +++.+ .+|+++|++.+
T Consensus 132 ~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~---------~~~~~g~--~~~~~-------~~d~~~l~~~~ 193 (427)
T 2hox_A 132 VTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE---------QTKYFDK--KGYVW-------AGNAANYVNVS 193 (427)
T ss_dssp HHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH---------HHHHSCB--TTEEE-------EEEGGGGTTCS
T ss_pred HHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH---------HHHHcCC--eeeee-------cCCHHHHHHhh
Confidence 567999999999 9999999999999876542 1122232 22232 35667777766
Q ss_pred hhCCCcEEEE-c-CCCCCccccHHHHHHHHHHhCCEEEEeccccchhhccccCCC--CC-CCccEEEeCCCCcC--CCCC
Q 012104 178 LDFRPKLIIC-G-GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAAN--PF-EYCHIVTTTTHKSL--RGPR 250 (471)
Q Consensus 178 ~~~~pklIi~-~-~s~~g~~~d~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~--p~-~~aDiv~~s~~K~l--~Gpr 250 (471)
.. ++|+|++ + +||+|..++ + +++ ++..+.|+++. . + .++ .+ ...+|+++|+||++ +|.|
T Consensus 194 ~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~-~----~-~~s~~~~~~~~~i~~~S~SK~~g~~G~R 259 (427)
T 2hox_A 194 NP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYY-W----P-HYTPIKYKADEDILLFTMSKFTGHSGSR 259 (427)
T ss_dssp CG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTC-S----T-TTSCCCSCBCCSEEEEEHHHHTSCGGGC
T ss_pred cC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeeccc-C----C-CCCccccCCCceEEEEeChhcCCCCCce
Confidence 53 6787764 4 789999999 4 333 56788888764 1 1 111 12 24679999999994 7889
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhc----------cHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS----------TPAFKAYAKQVKA 320 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~----------~~~~~~~~~~~~~ 320 (471)
.|+++++++ ++.+++.........+.+...+.+ .+.+|+... ...+++..+++.+
T Consensus 260 iG~~~~~~~--------------~l~~~l~~~~~~~~~~~~~~~q~a-~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (427)
T 2hox_A 260 FGWALIKDE--------------SVYNNLLNYMTKNTEGTPRETQLR-SLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRE 324 (427)
T ss_dssp CEEEEECCH--------------HHHHHHHHHHHHHTSSCCHHHHHH-HHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHH
T ss_pred EEEEEECCH--------------HHHHHHHHHHHhcCCCCCHHHHHH-HHHHhhcchhhhccccchhHHHHHHHHHHHHH
Confidence 999999532 555555443222222333333333 333554321 1234556677788
Q ss_pred HHHHHHHHHHcC-CceE--ee-----------CCCCCeeEEEEccCCCCCHHHH-HHHHhhcCeEeccCCcCCCCCCCCC
Q 012104 321 NAVALGNYLTGK-GYSL--VT-----------GGTENHLVLWDLRPLGLTGNKV-EKLCDLCNITVNKNAVFGDSSALAP 385 (471)
Q Consensus 321 na~~l~~~L~~~-g~~i--~~-----------~~~~~~~~~v~~~~~~~~~~~~-~~~L~~~gI~v~~~~~p~~~~~~~~ 385 (471)
+.+.|.+.|++. |+.+ +. .+....++|+++.. +..++ ..+++++||.+.++..++. .+
T Consensus 325 ~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~~----~~ 397 (427)
T 2hox_A 325 RWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW---EEDKDCYQTFQNGRINTQNGVGFEA----SS 397 (427)
T ss_dssp HHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS---GGGCSHHHHHHHTTEECEEGGGGTS----CT
T ss_pred HHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC---cHHHHHHHHHHHCCEEEcCCCccCC----CC
Confidence 889999999887 7765 11 12335678888853 23334 5556789999998866542 35
Q ss_pred CeeEEecCCCCCcCCCHHHHHHHHHHHHHHHH
Q 012104 386 GGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 386 ~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~ 417 (471)
+++||++. + +++++++..+.|.+++.
T Consensus 398 ~~~Ris~~--~----~~e~l~~~l~~l~~~~~ 423 (427)
T 2hox_A 398 RYVRLSLI--K----TQDDFDQLMYYLKDMVK 423 (427)
T ss_dssp TEEEEECS--S----CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEec--C----CHHHHHHHHHHHHHHHh
Confidence 79999984 2 46788888888877664
No 228
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.75 E-value=1.4e-16 Score=163.88 Aligned_cols=329 Identities=13% Similarity=0.022 Sum_probs=183.4
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--CC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~p 120 (471)
.+|.|.+++...+.... .+....+ ..+.. ++ ..++++++++.+..+ -.+.++||++|+.+++..+. ..
T Consensus 81 ~~p~v~~A~~~~~~~~~--~~~~~~~--~~~~~---~~-la~~l~~~~~~~~~~--~v~~~~sGseA~~~alk~a~~~~g 150 (453)
T 4ffc_A 81 SHPAVAAAIADQATHFT--HTCFMVT--PYEQY---VQ-VAELLNALTPGDHDK--RTALFNSGAEAVENAIKVARLATG 150 (453)
T ss_dssp TCHHHHHHHHHHHHHCS--CCTTTTS--CCHHH---HH-HHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcc--ccccCcC--CCHHH---HH-HHHHHHHhCCCCCCc--EEEEeCcHHHHHHHHHHHHHHhcC
Confidence 37999999887764421 1111111 11222 22 236778888743211 24567899999999997654 35
Q ss_pred CCEEEEeCCCCCCcccccccccCCc------cceeccceeEEEeeeecC-CCCCCC--------HHHHHHHhhhCCCcEE
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGK------KISATSIYFESLPYKVNS-STGYID--------YDKLEEKALDFRPKLI 185 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~------~~~~~g~~~~~~~~~v~~-~~~~iD--------~~~le~~~~~~~pklI 185 (471)
+++|+++++.|.|+... .....+. ........+..++++... +...++ .+.|++.+...++.+|
T Consensus 151 ~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aav 229 (453)
T 4ffc_A 151 RPAVVAFDNAYHGRTNL-TMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAI 229 (453)
T ss_dssp CCEEEEETTCCCCSSHH-HHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCEEEEEcCccCCcchH-HHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 68999999888665311 0000000 000001122333333210 111222 3556665543445677
Q ss_pred EEcC-CC-CCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC----CccEEEeCCCCcC-CCCCeEEE
Q 012104 186 ICGG-SA-YPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----YCHIVTTTTHKSL-RGPRAGMI 254 (471)
Q Consensus 186 i~~~-s~-~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~----~aDiv~~s~~K~l-~GprgG~i 254 (471)
++.+ ++ .|...+ +++|+++|+++|++||+|++|. |+...|.. ..+. ..|+++ ++|++ .|.|.|++
T Consensus 230 i~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~g~~g~~-~a~~~~~~~pdi~t--~sK~~~~G~~~G~~ 305 (453)
T 4ffc_A 230 IIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-GFARTGAW-FASEHEGIVPDIVT--MAKGIAGGMPLSAV 305 (453)
T ss_dssp EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSS-STHHHHTCCCSEEE--ECGGGGTTSSCEEE
T ss_pred EEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCccccc-chhhhcCCCcchHh--hhhhhcCCcCeEEE
Confidence 7763 33 344544 8899999999999999999996 65333321 1111 246665 55996 46788999
Q ss_pred EeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc---
Q 012104 255 FYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG--- 331 (471)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~--- 331 (471)
++++ ++.+.+......+..+++.. ..++..++++.... +++.+++.++.+++++.|++
T Consensus 306 ~~~~---------------~i~~~~~~~~~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~ 366 (453)
T 4ffc_A 306 TGRA---------------ELMDAVYAGGLGGTYGGNPV-TCAAAVAALGVMRE---LDLPARARAIEASVTSRLSALAE 366 (453)
T ss_dssp EEEH---------------HHHTTSCTTSSCCSSSSCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECH---------------HHHhhhcccCcCCCCCcCHH-HHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHHHHh
Confidence 8887 45554443322233333333 33333345654422 23455556666666666654
Q ss_pred -CC-ceEeeCCCCCeeEEEEccC------CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHH
Q 012104 332 -KG-YSLVTGGTENHLVLWDLRP------LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEK 403 (471)
Q Consensus 332 -~g-~~i~~~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~ 403 (471)
.+ +..+. +. ..++++++.. ......++.+.|.++||.+.++.. ..+.+||.++... +++
T Consensus 367 ~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~iRi~~~~~~----t~e 433 (453)
T 4ffc_A 367 EVDIIGEVR-GR-GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-------FGNVIRLLPPLVI----GDD 433 (453)
T ss_dssp HCSSEEEEE-EE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-------TSCEEEECCCTTC----CHH
T ss_pred hCCCeEEEE-ee-ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-------CCCEEEEECCCCC----CHH
Confidence 22 22222 12 3366676632 111245577788889999976421 1368999876544 479
Q ss_pred HHHHHHHHHHHHHHH
Q 012104 404 DFEQIGEFLHRAVTL 418 (471)
Q Consensus 404 d~~~l~~~i~~~l~~ 418 (471)
+++++.+.|.++++.
T Consensus 434 ~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 434 LLDEGITALSDIIRA 448 (453)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 229
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.75 E-value=1.1e-16 Score=164.41 Aligned_cols=328 Identities=10% Similarity=-0.009 Sum_probs=182.0
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhcC--CC
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE--PH 121 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all~--pG 121 (471)
+|.|.+++...+.... .+...++ ..+.. +++ .++++++++....+ -.+.++||++|+.+++..+.. .+
T Consensus 79 ~p~v~~A~~~~~~~~~--~~~~~~~--~~~~~---~~l-a~~l~~~~~~~~~~--~v~~~~sGseA~~~Alk~a~~~~g~ 148 (451)
T 3oks_A 79 APKVVEAVRSQVGDFT--HTCFMVT--PYEGY---VAV-CEQLNRLTPVRGDK--RSALFNSGSEAVENAVKIARSHTHK 148 (451)
T ss_dssp CHHHHHHHHHHHTTCS--CCTTTTS--CCHHH---HHH-HHHHHHHSSCCSSE--EEEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcc--cccCCcc--CCHHH---HHH-HHHHHHhCCcCCCC--EEEEeCcHHHHHHHHHHHHHHhcCC
Confidence 7899999887764321 1111111 11222 222 36777888643211 245678999999999977653 45
Q ss_pred CEEEEeCCCCCCcccccccccCCc------cceeccceeEEEeeeec-------CCCCC---CCHHHHHHHhhh----CC
Q 012104 122 DRIMGLDLPSGGHLTHGYYTSGGK------KISATSIYFESLPYKVN-------SSTGY---IDYDKLEEKALD----FR 181 (471)
Q Consensus 122 D~Vl~~~~~~~g~~s~~~~~~~g~------~~~~~g~~~~~~~~~v~-------~~~~~---iD~~~le~~~~~----~~ 181 (471)
++|++.++.|.|+.. +.....+. ........+..++++.. .+... .+++.+++.+.+ .+
T Consensus 149 ~~ii~~~~~yhG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (451)
T 3oks_A 149 PAVVAFDHAYHGRTN-LTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADN 227 (451)
T ss_dssp CEEEEETTCCCCSSH-HHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEcCCcCCccH-HHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCC
Confidence 899999988866532 10000000 00000112233333210 00001 134555454432 34
Q ss_pred CcEEEEcC-C-CCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcC-CCCCe
Q 012104 182 PKLIICGG-S-AYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSL-RGPRA 251 (471)
Q Consensus 182 pklIi~~~-s-~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l-~Gprg 251 (471)
+.+|++.+ + +.|...+ +++|+++|+++|++||+|++|. |+...|... ..+. ..|++ |++|++ .|+|.
T Consensus 228 ~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~i 304 (451)
T 3oks_A 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLI--VTAKGIAGGLPL 304 (451)
T ss_dssp EEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCee--eehhhhhCCcce
Confidence 56777763 2 3455555 8999999999999999999997 664433211 0111 35677 456996 46688
Q ss_pred EEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Q 012104 252 GMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG 331 (471)
Q Consensus 252 G~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~ 331 (471)
|++++++ ++.+.+......+..+++.. ..++...+++.+.. .++.+++.++.+++++.|++
T Consensus 305 G~v~~~~---------------~~~~~~~~~~~~~t~~~~~~-~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~ 365 (451)
T 3oks_A 305 SAVTGRA---------------EIMDSPHVSGLGGTYGGNPI-ACAAALATIETIES---EGLVARAQQIEKIMKDRLGR 365 (451)
T ss_dssp EEEEEEH---------------HHHTCSCTTSBCCSSSSCHH-HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECH---------------HHHhhhcCCCcCCCCCCCHH-HHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHH
Confidence 9998887 45544443222223333333 33333345654422 24555666666666666654
Q ss_pred C----C-ceEeeCCCCCeeEEEEccC------CCCCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCC
Q 012104 332 K----G-YSLVTGGTENHLVLWDLRP------LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 332 ~----g-~~i~~~~~~~~~~~v~~~~------~~~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~ 400 (471)
. + +..+. +. ..++++++.. ...+..++.+.|.++||.+.+... ..+.+||.++...
T Consensus 366 ~~~~~~~~~~~~-~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~iRi~~~~~~---- 432 (451)
T 3oks_A 366 LQAEDDRIGDVR-GR-GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGT-------YGNVVRFLPPLSI---- 432 (451)
T ss_dssp HHHHCTTEEEEE-EE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECT-------TSCEEEECCCTTC----
T ss_pred HHhhCCCeEEEE-Ee-eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCC-------CCCEEEEECCCCC----
Confidence 2 2 22222 22 3356676632 111245677888889999976421 1368999875543
Q ss_pred CHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~ 417 (471)
++++++++.+.|.++++
T Consensus 433 t~e~i~~~l~~l~~~l~ 449 (451)
T 3oks_A 433 GDDLLNEGLDVLEEVLR 449 (451)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 47999999999988775
No 230
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.75 E-value=8.5e-16 Score=156.62 Aligned_cols=315 Identities=15% Similarity=0.097 Sum_probs=179.7
Q ss_pred CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--CC
Q 012104 43 TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EP 120 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~p 120 (471)
.+|.|.+++...+.+....++|. +...++ .++++++++ ..+ -.+.++||++|+..++.... .+
T Consensus 70 ~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~l----a~~l~~~~~-~~~---~v~~~~sGsea~~~al~~a~~~~~ 134 (429)
T 4e77_A 70 NHPAIRQAVIEAVERGLSFGAPT-------EMEVKM----AQLVTDLVP-TMD---MVRMVNSGTEATMSAIRLARGYTG 134 (429)
T ss_dssp TCHHHHHHHHHHHTTCSCCSSCC-------HHHHHH----HHHHHHHST-TCS---EEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCcccCCCC-------HHHHHH----HHHHHhhCC-CCC---EEEEeCcHHHHHHHHHHHHHHhhC
Confidence 47999999988775532222221 222222 356777776 222 24667899999999887542 46
Q ss_pred CCEEEEeCCCCCCcccccccccCCcc-c-----eeccc----eeEEEeeeecCCCCCCCHHHHHHHhhhC--CCcEEEEc
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKK-I-----SATSI----YFESLPYKVNSSTGYIDYDKLEEKALDF--RPKLIICG 188 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~-~-----~~~g~----~~~~~~~~v~~~~~~iD~~~le~~~~~~--~pklIi~~ 188 (471)
++.|++.++.|.|.... .....+.. . ...+. ......+ ...|+++|+++++++ ++++|++.
T Consensus 135 ~~~ii~~~~~yhg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d~~~le~~l~~~~~~~~~vi~e 207 (429)
T 4e77_A 135 RDKIIKFEGCYHGHADC-LLVKAGSGALTLGQPNSPGVPTDFAKHTLTC------TYNDLASVRQAFEQYPQEVACIIVE 207 (429)
T ss_dssp CCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEE------CTTCHHHHHHHHHHSTTTEEEEEEC
T ss_pred CCEEEEEcCccCCCChh-hhhhcCCcccccCCCCcCCCCCccCCceeec------CCCCHHHHHHHHHhcCCCEEEEEEC
Confidence 78999988877554210 00000000 0 00000 0001111 123899999999753 45677777
Q ss_pred C--CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCC-CCCeEEEEeeC
Q 012104 189 G--SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLR-GPRAGMIFYRK 258 (471)
Q Consensus 189 ~--s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~-GprgG~i~~~~ 258 (471)
+ ++.|...+ +++|+++|+++|++||+|++|. |+ ..|... ..+. ..|++ |++|++. |.++|++++++
T Consensus 208 p~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~ 283 (429)
T 4e77_A 208 PVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLGKIIGGGMPVGAFGGRR 283 (429)
T ss_dssp SSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEEGGGGTTSCCEEEEECH
T ss_pred CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eecccccCCCCeEEEEECH
Confidence 3 23456666 8999999999999999999998 66 333211 0111 34776 5569974 56889998876
Q ss_pred CCCCCCCCCCCCcccchHhhhhhcC--CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc----C
Q 012104 259 GPKPPKKGQPEGAVYDFEDKINFAV--FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTG----K 332 (471)
Q Consensus 259 ~~~~~~~~~~~i~~~~l~~~i~~~~--~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~----~ 332 (471)
++.+.+.... +.+..-+.+...+++...+++.+.. +++.+++.++.+++++.|++ .
T Consensus 284 ---------------~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~ 345 (429)
T 4e77_A 284 ---------------EVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ---VGVYETLTELTDSLATGLRHAAKEE 345 (429)
T ss_dssp ---------------HHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------HHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444443210 1111112344444555556765533 24555666666666666654 3
Q ss_pred CceEeeCCCCCeeEEEEccCCC-------------CCHHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcC
Q 012104 333 GYSLVTGGTENHLVLWDLRPLG-------------LTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRG 399 (471)
Q Consensus 333 g~~i~~~~~~~~~~~v~~~~~~-------------~~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g 399 (471)
++.....+ ...++++.+.... ....++.+.|.+.||.+.++. ...+|+++ .
T Consensus 346 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------~~~~~~~~--~---- 409 (429)
T 4e77_A 346 NIPLVVNH-VGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSA---------FEAGFMSL--A---- 409 (429)
T ss_dssp TCCCEEEE-ETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSST---------TSCEECCT--T----
T ss_pred CCceEEEE-eeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecC---------CCCEEEec--c----
Confidence 44321112 2346677765321 012567777888899997642 13466542 2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 012104 400 LLEKDFEQIGEFLHRAVT 417 (471)
Q Consensus 400 ~~~~d~~~l~~~i~~~l~ 417 (471)
.++++++++.+.|.++++
T Consensus 410 ~t~e~i~~~l~~l~~~l~ 427 (429)
T 4e77_A 410 HSNEDIQKTVNAARRCFA 427 (429)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 358999999999988764
No 231
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.70 E-value=1.1e-15 Score=157.77 Aligned_cols=317 Identities=13% Similarity=0.097 Sum_probs=180.9
Q ss_pred CcHHHHHHHhhhhhcc-CCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc---
Q 012104 43 TSFAVIEALGSALTNK-YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--- 118 (471)
Q Consensus 43 ~s~~v~~a~~~~l~~~-~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--- 118 (471)
.+|.|.+|+...+... +..+. . ++. ....++++...++++++++...+ -.+.+.||++||.+++..+.
T Consensus 80 ~~p~v~~A~~~~~~~~~~~~~~---~-~~~-~~~~~l~~~la~~l~~~~~~~~~---~v~f~~sGseA~~~Aik~a~~~~ 151 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVSTFINRP---A-LGI-LPPENFVEKLRESLLSVAPKGMS---QLITMACGSCSNENAFKTIFMWY 151 (472)
T ss_dssp TCHHHHHHHHCGGGHHHHHCCC---C-TTT-SCBTTHHHHHHHTGGGGCCTTCC---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhccccccc---c-ccc-ccHHHHHHHHHHHHHHhCCCCcC---EEEEeCCchhHHHHHHHHHHHHh
Confidence 3799999997765321 11110 1 111 11113333333445566643332 24567899999999998763
Q ss_pred ----------------------CCC---CEEEEeCCCCCCcccccccccCCccceeccce------e-----EEEeeeec
Q 012104 119 ----------------------EPH---DRIMGLDLPSGGHLTHGYYTSGGKKISATSIY------F-----ESLPYKVN 162 (471)
Q Consensus 119 ----------------------~pG---D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~------~-----~~~~~~v~ 162 (471)
+|| ++|+++++.|.|+.. +. +...+.. . ..++++..
T Consensus 152 ~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~-~~-------~~~~g~~~~~~~~~~~~~~~~~~~p~~ 223 (472)
T 1ohv_A 152 RSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTM-GC-------LATTHSKAIHKIDIPSFDWPIAPFPRL 223 (472)
T ss_dssp HHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSH-HH-------HHHCCSCHHHHTTSCCCCCCEECCCCC
T ss_pred hhhccCcccccccccccccccccccCCCCeEEEECCCcccccH-HH-------HhcCCCccccccCCCCCCCcccCCCcc
Confidence 156 999999988766432 11 1111110 0 01122100
Q ss_pred --CCC---------CCCCHHHHHHHhhhC-----CCcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccc
Q 012104 163 --SST---------GYIDYDKLEEKALDF-----RPKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHIS 220 (471)
Q Consensus 163 --~~~---------~~iD~~~le~~~~~~-----~pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~ 220 (471)
+.. ...|+++|++++.++ ++++|++. ++++|...+ +++|+++|+++|++||+|++|.
T Consensus 224 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~- 302 (472)
T 1ohv_A 224 KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT- 302 (472)
T ss_dssp CSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-
T ss_pred cCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-
Confidence 000 023789999988752 67888876 456787777 8999999999999999999997
Q ss_pred hhhccccCCC--CCC---CccEEEeCCCCc-CCCCCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHH
Q 012104 221 GLVAAQEAAN--PFE---YCHIVTTTTHKS-LRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNH 294 (471)
Q Consensus 221 glv~~g~~~~--p~~---~aDiv~~s~~K~-l~GprgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~ 294 (471)
|+...|.... .+. ..|+++ ++|+ +. ||+++ ++ ++. .+......+..++ +..
T Consensus 303 g~g~~g~~~~~~~~gv~~~~Di~t--~sK~~l~---GG~~~-~~---------------~~~-~~~~~~~~~T~~~-~~~ 359 (472)
T 1ohv_A 303 GGGSTGKFWAHEHWGLDDPADVMT--FSKKMMT---GGFFH-KE---------------EFR-PNAPYRIFNTWLG-DPS 359 (472)
T ss_dssp TTTTTSSSSGGGGGCCSSCCSEEE--ECGGGSS---EEEEE-CG---------------GGS-CSSSSSSCCSSSS-CHH
T ss_pred CCCCCCCchhccccCCCCCCCEEE--Ecccccc---CCccC-ch---------------hhc-ccccccccCccCc-cHH
Confidence 5433332100 011 167775 4598 54 57776 44 221 1111111122222 333
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC--C----ceEeeCCCCCeeEEEEccCCCCCHHHHHHHHhhcC
Q 012104 295 QIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK--G----YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCN 368 (471)
Q Consensus 295 ~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~--g----~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~g 368 (471)
.+++..++++.+.+ .++.+++.++.++|.+.|++. + +..+. +. ..++++++.. ..+...+.+.|.++|
T Consensus 360 ~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~-~~-g~~~~~~~~~-~~~~~~~~~~l~~~G 433 (472)
T 1ohv_A 360 KNLLLAEVINIIKR---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR-GR-GTFCSFDTPD-ESIRNKLISIARNKG 433 (472)
T ss_dssp HHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE-EE-TTEEEEECSS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec-CC-ceEEEEEeCC-hhHHHHHHHHHHHCC
Confidence 44444456665432 234566777777888777653 2 22122 22 3455666642 112456777777889
Q ss_pred eEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 369 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 369 I~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
|.+.+. ..+.|||+++..+ +++|++++.+.|.+++..
T Consensus 434 v~~~~~---------g~~~iRi~~~~~~----t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 434 VMLGGC---------GDKSIRFRPTLVF----RDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp EECEEE---------TTTEEEECCCTTC----CHHHHHHHHHHHHHHHHT
T ss_pred eEEecC---------CCCEEEEECCCCC----CHHHHHHHHHHHHHHHHh
Confidence 998752 1368999876554 489999999999887753
No 232
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.53 E-value=7e-12 Score=127.74 Aligned_cols=308 Identities=19% Similarity=0.132 Sum_probs=173.0
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc--CCC
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL--EPH 121 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all--~pG 121 (471)
.|.|.+|+...+......+. .+....++ .+++++++..-. -...++|||+||..++.... ...
T Consensus 105 hp~v~~Av~~q~~~~~~~~~-------~~~~~~~l----ae~l~~~~p~~~----~v~f~~SGsEA~e~AiklAr~~tgr 169 (454)
T 4ao9_A 105 APEIRDAVIEAMQGGINLTG-------HNLLEGRL----ARLICERFPQIE----QLRFTNSGTEANLMALTAALHFTGR 169 (454)
T ss_dssp CHHHHHHHHHHHHTCSCCCS-------EESSHHHH----HHHHHHHSTTCS----EEEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhcCCCccC-------CcHHHHHH----HHHHHHhCCCCC----EEEEeCchHHHHHHHHHHHHhcccC
Confidence 69999998877754322111 12222223 356667774221 23557899999999887652 245
Q ss_pred CEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCc--EEEEc--CCCCCcccc
Q 012104 122 DRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPK--LIICG--GSAYPRDWD 197 (471)
Q Consensus 122 D~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pk--lIi~~--~s~~g~~~d 197 (471)
++|+.+.-.|.|+.. +... ........+....+ ..-|.+.+++.+.++.++ .|++. .+..|...+
T Consensus 170 ~~ii~~~~~yHG~t~-~~~~----~~~~~~~~~~~~~~------p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p 238 (454)
T 4ao9_A 170 RKIVVFSGGYHGGVL-GFGA----RPSPTTVPFDFLVL------PYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPG 238 (454)
T ss_dssp CEEEEETTCBCSTTC-BBSS----SBCTTSCCSEEEEE------CTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEEC
T ss_pred CeEEEEeCCcCCccc-cccc----cccCccCCCCcccC------CCchHHHHHHHHhhcCCceEEEEeccccCCCCccCC
Confidence 788888866655421 1100 00001111222222 135899999999876554 45544 345566655
Q ss_pred ----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC-CccEEEeCCCCcCCC-CCeEEEEeeCCCCCCCCCCCCCc
Q 012104 198 ----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE-YCHIVTTTTHKSLRG-PRAGMIFYRKGPKPPKKGQPEGA 271 (471)
Q Consensus 198 ----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~-~aDiv~~s~~K~l~G-prgG~i~~~~~~~~~~~~~~~i~ 271 (471)
+++|+++|+++|++||+|+++. |-...+-...-+. ..|+++.+ |.+.| ...|.+++++
T Consensus 239 ~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~------------- 302 (454)
T 4ao9_A 239 QPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRA------------- 302 (454)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECH-------------
T ss_pred chhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHH-------------
Confidence 7899999999999999999996 6222110000011 35888755 88754 3457777776
Q ss_pred ccchHhhhhhcC----CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC----Cc--eEeeCCC
Q 012104 272 VYDFEDKINFAV----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK----GY--SLVTGGT 341 (471)
Q Consensus 272 ~~~l~~~i~~~~----~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~----g~--~i~~~~~ 341 (471)
++.+.+.... ..++.++ +....++..++|+.+.+++ ..+++.++.++|++.|++. ++ ++- +.
T Consensus 303 --ei~~~~~~~~~~~~h~~T~~g-nPla~AAala~L~~l~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vr--g~ 374 (454)
T 4ao9_A 303 --DVMALFDPRTGPLAHSGTFNN-NVMTMAAGYAGLTKLFTPE---AAGALAERGEALRARLNALCANEGVAMQFT--GI 374 (454)
T ss_dssp --HHHGGGCTTTCSCCCCCTTTT-CHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHHHHHHHTBSCEEE--EE
T ss_pred --HHHHHHhhccCCccccCCCCC-CHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHhhCCCCEEEe--ee
Confidence 4555443211 1122222 2333344445677776643 4566667777777777653 32 221 12
Q ss_pred CCeeEEEEccCCC---------CCHH---HHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHH
Q 012104 342 ENHLVLWDLRPLG---------LTGN---KVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIG 409 (471)
Q Consensus 342 ~~~~~~v~~~~~~---------~~~~---~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~ 409 (471)
+. ++-+.+.... .+.. .+...|.++||.+.+. +.+.++++ .+++|++++.
T Consensus 375 G~-m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-----------~~~~~s~~------~T~~dId~~l 436 (454)
T 4ao9_A 375 GS-LMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-----------GFVVLSLP------LTDADIDRYV 436 (454)
T ss_dssp TT-EEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-----------CEEECCTT------CCHHHHHHHH
T ss_pred ce-EEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-----------CCEEEeCC------CCHHHHHHHH
Confidence 22 3344443211 1222 2445667889998531 23444331 4589999999
Q ss_pred HHHHHHHHHH
Q 012104 410 EFLHRAVTLT 419 (471)
Q Consensus 410 ~~i~~~l~~~ 419 (471)
+++++++...
T Consensus 437 ~al~~~l~~~ 446 (454)
T 4ao9_A 437 AAIGSFIGGH 446 (454)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 233
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.29 E-value=7.1e-16 Score=158.15 Aligned_cols=318 Identities=15% Similarity=0.070 Sum_probs=179.0
Q ss_pred CCeeEecCCCC-----CcHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhc-CCCCCCCceeeecCC
Q 012104 32 RGIELIASENF-----TSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTF-HLDPTQWGVNVQPYS 105 (471)
Q Consensus 32 ~~i~li~s~n~-----~s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lf-g~~~~~~~~~v~~~s 105 (471)
..|++..+... .+|.|.+|+...+.+....+++ ++...++ .+++++++ +.+. .+.++|
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~-------~~~~~~L----ae~L~~~~p~~~~-----v~~~nS 164 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQ-------TENEALF----AEAVCDRFPSIDL-----VRFTNS 164 (465)
Confidence 34555544431 3678888877665442211221 1222223 35677777 4432 355789
Q ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCCCCCcccccccccCCccceeccceeEEEeeeecCCCCCCCHHHHHHHhhh--CC
Q 012104 106 GSPANFAAYTAV--LEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALD--FR 181 (471)
Q Consensus 106 Gt~A~~~~~~al--l~pGD~Vl~~~~~~~g~~s~~~~~~~g~~~~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~--~~ 181 (471)
|++|+..++..+ ...+|+|+.++..|.|+.. +.. .| ....|....++.++ ..|+++|++++++ .+
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~-~~~--sg--~~~~g~~~~~~~~~------~~d~~~l~~~l~~~~~~ 233 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLL-NFA--SG--HAPTNAPYHVVLGV------YNDVEGTADLLKRHGHD 233 (465)
Confidence 999999998865 2456999999988755431 110 00 00011100112221 2478999998874 46
Q ss_pred CcEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCCC----CccEEEeCCCCcCCC-CC
Q 012104 182 PKLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPFE----YCHIVTTTTHKSLRG-PR 250 (471)
Q Consensus 182 pklIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~~----~aDiv~~s~~K~l~G-pr 250 (471)
+++|++. ++++|...+ +++|+++|+++|++||+|++|. + .. |. ...+. ..|++ |++|++.| .+
T Consensus 234 ~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~-r~-g~-~~a~~~~gv~pDi~--t~sK~lg~G~p 307 (465)
T 2yky_A 234 CAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S-RL-SG-GGAQEMLGISADLT--TLGKYIGGGMS 307 (465)
Confidence 7888865 345776666 8899999999999999999998 4 22 21 11111 24665 67799754 57
Q ss_pred eEEEEeeCCCCCCCCCCCCCcccchHhhhhh---c-C-CCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Q 012104 251 AGMIFYRKGPKPPKKGQPEGAVYDFEDKINF---A-V-FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVAL 325 (471)
Q Consensus 251 gG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~---~-~-~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l 325 (471)
.|+++++++ +.+.+.. . . ..+..+++.. ..++..++++.+.++ .+.+++.++.++|
T Consensus 308 iG~v~~~~~---------------i~~~l~~~~~g~~~~~~T~~~npl-a~aAa~aaL~~l~~~---~~~~~~~~~~~~l 368 (465)
T 2yky_A 308 FGAFGGRRD---------------LMERFDPARDGAFAHAGTFNNNIL-TMSAGHAALTQIYTR---QAASDLSASGDRF 368 (465)
Confidence 799988874 3333332 1 1 1122222222 223333456555432 4566677777777
Q ss_pred HHHHHcC--CceEee-CCCCCeeEEEEccCCCC---------C---HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEE
Q 012104 326 GNYLTGK--GYSLVT-GGTENHLVLWDLRPLGL---------T---GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRI 390 (471)
Q Consensus 326 ~~~L~~~--g~~i~~-~~~~~~~~~v~~~~~~~---------~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRi 390 (471)
++.|++. .+.+.. -.....++++.+....+ + ...+.+.|.++||.+.+.. + .. +
T Consensus 369 ~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~-~--------~~--~ 437 (465)
T 2yky_A 369 RANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRG-M--------YA--L 437 (465)
Confidence 7777664 222211 11223456666542111 1 2346667778999987642 1 01 2
Q ss_pred ecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 391 GTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 391 g~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
++ ..+++|++++.+.+.++++.
T Consensus 438 s~------~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 438 SL------EIADAGRDAFAEALADFIGE 459 (465)
Confidence 21 24578999999999887764
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.28 E-value=2.1e-09 Score=109.77 Aligned_cols=330 Identities=15% Similarity=0.060 Sum_probs=167.5
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHh--cCCC
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAV--LEPH 121 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~al--l~pG 121 (471)
.|+|.+|+...+..-. .. ..++...+. .++ + .+++.+++..+... -.+.++|||+|+..++... ....
T Consensus 82 ~p~v~~Ai~~q~~~~~-~~---~~~~~~~~~--~~~-l-ae~L~~~~p~~~~~--~v~f~~sGsEA~e~AlklAr~~t~r 151 (456)
T 4atq_A 82 DPAVVAAVQEAAAHFT-HT---CFMVTPYEG--YVA-V-TEQLNRLTPGDHAK--RTVLFNSGAEAVENAVKVARLATGR 151 (456)
T ss_dssp CHHHHHHHHHHHHHCS-CC---TTTTSCCHH--HHH-H-HHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhhcc-Cc---ccCccCcHH--HHH-H-HHHHHHhCCCCCCc--EEEEeCChHHHHHHHHHHHhhhhcC
Confidence 6899999877664321 11 011111121 222 2 25667777543211 2345689999999988643 2346
Q ss_pred CEEEEeCCCCCCcccccccccCCccce----e--ccceeEEEeeee--cCC-CCCCCHHHHHHHhh-------hCCCcEE
Q 012104 122 DRIMGLDLPSGGHLTHGYYTSGGKKIS----A--TSIYFESLPYKV--NSS-TGYIDYDKLEEKAL-------DFRPKLI 185 (471)
Q Consensus 122 D~Vl~~~~~~~g~~s~~~~~~~g~~~~----~--~g~~~~~~~~~v--~~~-~~~iD~~~le~~~~-------~~~pklI 185 (471)
.+|+...-.|.|.-. +.....+.... . ....+..++++. ... ....+.+.+++.+. ..++..|
T Consensus 152 ~~ii~~~~~yHG~t~-~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv 230 (456)
T 4atq_A 152 DAVVAFDHAYHGRTN-LTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI 230 (456)
T ss_dssp CEEEEETTCCCCSSH-HHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CeEEEEecccCCccc-cccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence 789988866655321 11000000000 0 000112222221 111 12233444433332 1234455
Q ss_pred EEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCCC-CCeEEEE
Q 012104 186 ICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG-PRAGMIF 255 (471)
Q Consensus 186 i~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~G-prgG~i~ 255 (471)
++. ....|...+ +++++++|+++|+++|+|+++. |+--.|..- .-+. ..|+++++ |.+.| ...|.++
T Consensus 231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~t-G~GRtG~~~a~e~~gv~PDivt~g--K~lggg~P~~av~ 307 (456)
T 4atq_A 231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQS-GFCRTGEWFAVDHEGVVPDIITMA--KGIAGGLPLSAIT 307 (456)
T ss_dssp EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGGTTSSCEEEE
T ss_pred EeccccCCCCccccchhhhHHHHHHHhhcCCceEeccccc-ccCCccccccccccCCCCchhhhh--hcccCcCCceeeE
Confidence 554 223343332 7899999999999999999997 653223211 0111 36898876 88754 3456677
Q ss_pred eeCCCCCCCCCCCCCcccchHhhhhhcCCCCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcC---
Q 012104 256 YRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGK--- 332 (471)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~~l~~~i~~~~~~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~na~~l~~~L~~~--- 332 (471)
+++ ++.+.+......+++++ +....++..++++.+.+++ ..+++.+..++|.+.|+++
T Consensus 308 ~~~---------------~i~~~~~~~~~~~Tf~g-npla~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~ 368 (456)
T 4atq_A 308 GRA---------------DLLDAVHPGGLGGTYGG-NPVACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAE 368 (456)
T ss_dssp EEH---------------HHHTTSCTTSSCCSSSS-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecH---------------HHHhcccccCCCCCCCC-ChHHHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHh
Confidence 776 34444433222233333 2333333334566554333 3445555555565555442
Q ss_pred -C---ceEee--CCCCCeeEEEEccCCC---CC---HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCC
Q 012104 333 -G---YSLVT--GGTENHLVLWDLRPLG---LT---GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGL 400 (471)
Q Consensus 333 -g---~~i~~--~~~~~~~~~v~~~~~~---~~---~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~ 400 (471)
. ..++. .+. ..++-+++.... .+ ...+.+.|.++|+.+.+.. + ..+.|||..|-. +
T Consensus 369 ~~~~~~~~v~~VRG~-Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g------~-~~~~irl~PpL~----i 436 (456)
T 4atq_A 369 LSAGGGSVVGDIRGR-GAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG------T-YGNVIRLLPPLV----I 436 (456)
T ss_dssp CC-----CEEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC------T-TSCEEEECCCTT----C
T ss_pred cccccCCceEEeeec-ceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC------C-CCCEEEEECCCC----C
Confidence 1 12221 111 123445553221 12 2346777888999986531 1 236799986533 4
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 012104 401 LEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 401 ~~~d~~~l~~~i~~~l~~ 418 (471)
++++++++.+.|.++|+.
T Consensus 437 t~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 437 SDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 589999999999998863
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.11 E-value=3.9e-08 Score=100.81 Aligned_cols=327 Identities=14% Similarity=0.107 Sum_probs=167.7
Q ss_pred cHHHHHHHhhhhhccCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCCceeeecCChHHHHHHHHHHhc-----
Q 012104 44 SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVL----- 118 (471)
Q Consensus 44 s~~v~~a~~~~l~~~~~~g~~~~r~~~g~~~~~~lE~~~~~~~~~lfg~~~~~~~~~v~~~sGt~A~~~~~~all----- 118 (471)
.|.|.+|+...+..-.. + ..+++. ..-..+| ++ +++.+++..+.+ -...+.|||+|+..++....
T Consensus 85 ~p~v~~Ai~~q~~~l~~--~--~~~~~~-~~~~~~~-lA-e~L~~~~p~~~~---~v~f~~sGsEA~e~AiKlAr~~~~~ 154 (473)
T 4e3q_A 85 HKGLIDAAKAQYERFPG--Y--HAFFGR-MSDQTVM-LS-EKLVEVSPFDSG---RVFYTNSGSEANDTMVKMLWFLHAA 154 (473)
T ss_dssp CHHHHHHHHHHHHHCCC--C--CCCTTE-EEHHHHH-HH-HHHHHHSSCSSC---EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccc--c--cccccc-cCHHHHH-HH-HHHHhhCCCCcc---EEEEeCchHHHHHHHHHHHHHHHHh
Confidence 68999988776643211 0 012211 1111222 33 567777754432 23457899999999887532
Q ss_pred --CCC-CEEEEeCCCCCCcccccccccCCcccee-cc---ceeEEEeeee--c-CCCCCC-------CHHHHHHHhhhCC
Q 012104 119 --EPH-DRIMGLDLPSGGHLTHGYYTSGGKKISA-TS---IYFESLPYKV--N-SSTGYI-------DYDKLEEKALDFR 181 (471)
Q Consensus 119 --~pG-D~Vl~~~~~~~g~~s~~~~~~~g~~~~~-~g---~~~~~~~~~v--~-~~~~~i-------D~~~le~~~~~~~ 181 (471)
+++ .+|+...-.|.|.- .+.....|..... .+ ..+..++.+. . .+.+.. ..+++++.+....
T Consensus 155 ~g~~~r~~ii~~~~~yHG~t-~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 233 (473)
T 4e3q_A 155 EGKPQKRKILTRWNAYHGVT-AVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREG 233 (473)
T ss_dssp TTCTTCCEEEEETTCCCCSS-HHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcceEEEeeceECCCc-cccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhC
Confidence 233 57888876654421 1110000000000 00 0011111110 0 011111 1345566665433
Q ss_pred C---cEEEEc--CCCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCC--CCCC-CccEEEeCCCCcCCC-
Q 012104 182 P---KLIICG--GSAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAA--NPFE-YCHIVTTTTHKSLRG- 248 (471)
Q Consensus 182 p---klIi~~--~s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~--~p~~-~aDiv~~s~~K~l~G- 248 (471)
+ ..|++. ....|...+ +++++++|+++|++||+|+++. |+--.|..- .-+. ..|+++.+ |.|.|
T Consensus 234 ~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~t-GfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG 310 (473)
T 4e3q_A 234 ADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC-GFGRTGNTWGCVTYDFTPDAIISS--KNLTAG 310 (473)
T ss_dssp GGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTT-SSSTTSSSCHHHHTTCCCSEEEEC--GGGGTT
T ss_pred CCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccc-cCCcccchhHHHhcCCCCChHHhc--ccccCC
Confidence 3 345544 223343332 6899999999999999999987 652222210 0011 36888765 99855
Q ss_pred -CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-----CC--CCCCCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 012104 249 -PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-----VF--PSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKA 320 (471)
Q Consensus 249 -prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-----~~--~~~~g~p~~~~iaa~a~al~~~~~~~~~~~~~~~~~ 320 (471)
...|.+++++ ++.+.+... .+ .+++++ +....++..++++.+.++ ...+++.+
T Consensus 311 ~~Pl~av~~~~---------------~i~~~~~~~~~~~~~~~hg~T~~G-npla~Aaala~L~~i~~~---~l~~~~~~ 371 (473)
T 4e3q_A 311 FFPMGAVILGP---------------ELSKRLETAIEAIEEFPHGFTASG-HPVGCAIALKAIDVVMNE---GLAENVRR 371 (473)
T ss_dssp SSCCEEEEECH---------------HHHHHHHHHHHHHSCCCCCCTTTT-CHHHHHHHHHHHHHHHHS---SHHHHHHH
T ss_pred CCCcccccccH---------------HHHHHhccccccccccccCCCCCC-Ccchhhhhhhhhhhhccc---cHHHHHHH
Confidence 3567777776 444444321 11 112222 333333333456555432 34556666
Q ss_pred HHHHHHHHHHcC----CceEeeCCCCCeeEEEEccCCC-----C-----CHHHHHHHHhhcCeEeccCCcCCCCCCCCCC
Q 012104 321 NAVALGNYLTGK----GYSLVTGGTENHLVLWDLRPLG-----L-----TGNKVEKLCDLCNITVNKNAVFGDSSALAPG 386 (471)
Q Consensus 321 na~~l~~~L~~~----g~~i~~~~~~~~~~~v~~~~~~-----~-----~~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~ 386 (471)
..++|.+.|+++ .+.-+. +.+ .++-+++.... . -...+.+.+.++|+.+.+. .+
T Consensus 372 ~g~~l~~~L~~l~~~~~v~~vR-G~G-l~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------g~ 439 (473)
T 4e3q_A 372 LAPRFEERLKHIAERPNIGEYR-GIG-FMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----------GQ 439 (473)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEE-EET-TEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----------TT
T ss_pred HHHHHHHHHHHHhcCCCeeEEe-ecc-eEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----------CC
Confidence 777777777653 221111 111 23334442111 1 1345778888999998652 25
Q ss_pred eeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHH
Q 012104 387 GVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT 419 (471)
Q Consensus 387 ~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~ 419 (471)
.+||..|-. +++++++++.+.+.++++..
T Consensus 440 ~i~l~PPL~----it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 440 SVVLCPPFI----LTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp EEEECCCTT----CCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCC----CCHHHHHHHHHHHHHHHHHH
Confidence 799875433 45899999999999888653
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.06 E-value=6.5e-09 Score=113.67 Aligned_cols=209 Identities=10% Similarity=-0.020 Sum_probs=116.8
Q ss_pred HHHHHHhhh-------CCCcEEEEcC---CCCCcccc----HHHHHHHHHHhCCEEEEeccccchhhccccCCCCC---C
Q 012104 171 DKLEEKALD-------FRPKLIICGG---SAYPRDWD----YARFRAVADKCGALLLCDMAHISGLVAAQEAANPF---E 233 (471)
Q Consensus 171 ~~le~~~~~-------~~pklIi~~~---s~~g~~~d----~~~i~~ia~~~g~~livD~a~~~glv~~g~~~~p~---~ 233 (471)
+.|++.+.+ .++..|++.+ +..|...+ +++|+++|++||++||+|++|. |+-..|... .. .
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-GfGRtG~~f-a~e~~g 654 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-GFWRLGVET-TTELLG 654 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-TTTTTSBSS-THHHHS
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-ccccCCCch-hhHhcC
Confidence 567777652 2345666553 33455443 7899999999999999999986 653333321 11 1
Q ss_pred -CccEEEeCCCCcCCC--CCeEEEEeeCCCCCCCCCCCCCcccchHhhhhhc-----C-CCCCCCCCcHHHHHHHHHHHH
Q 012104 234 -YCHIVTTTTHKSLRG--PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFA-----V-FPSLQGGPHNHQIGALAVALK 304 (471)
Q Consensus 234 -~aDiv~~s~~K~l~G--prgG~i~~~~~~~~~~~~~~~i~~~~l~~~i~~~-----~-~~~~~g~p~~~~iaa~a~al~ 304 (471)
..|++| +.|.|.| .+.|++++++ ++.+.+... . ..++++++ ....++..++|+
T Consensus 655 v~PDiit--lsK~L~gG~~Plgav~~~~---------------~i~~~~~~~~~~~~~~hg~T~~g~-Pla~Aaala~L~ 716 (831)
T 4a0g_A 655 CKPDIAC--FAKLLTGGMVPLAVTLATD---------------AVFDSFSGDSKLKALLHGHSYSAH-AMGCATAAKAIQ 716 (831)
T ss_dssp SCCSEEE--ECGGGGTTSSCCEEEEECH---------------HHHHTTCSSCGGGSCCCCCTTTTC-HHHHHHHHHHHH
T ss_pred CCCcEEE--EecccccCccCcEEEEECH---------------HHHHHHhcccccccceeecCCccc-HHHHHHHHHHHH
Confidence 357875 5699876 3568888887 344433321 1 11223333 333333334566
Q ss_pred HhccHHHHHHHHHHHHHH--------HHHHHHHHcCC-ceEeeCCCCCeeEEEEccCC-------CCCHHHHHHHHhhcC
Q 012104 305 QASTPAFKAYAKQVKANA--------VALGNYLTGKG-YSLVTGGTENHLVLWDLRPL-------GLTGNKVEKLCDLCN 368 (471)
Q Consensus 305 ~~~~~~~~~~~~~~~~na--------~~l~~~L~~~g-~~i~~~~~~~~~~~v~~~~~-------~~~~~~~~~~L~~~g 368 (471)
.+.++++ .+++.++. +.+.+.+.+.. +.-+. +. ..++.+++... ......+.+.|.++|
T Consensus 717 ~i~~~~l---~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr-g~-Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~G 791 (831)
T 4a0g_A 717 WFKDPET---NHNITSQGKTLRELWDEELVQQISSHSAVQRVV-VI-GTLFALELKADASNSGYASLYAKSLLIMLREDG 791 (831)
T ss_dssp HHHCTTT---CTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE-EE-TTEEEEEEC---------CHHHHHHHHHHHHTT
T ss_pred HHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe-ec-ccEEEEEEecCccccccchHHHHHHHHHHHHCC
Confidence 5433222 12221111 12334454442 22222 12 23445555321 012345777888899
Q ss_pred eEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHH
Q 012104 369 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 418 (471)
Q Consensus 369 I~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~ 418 (471)
|.+.+. .+.|||..+..+ ++++++++.+.|.++++.
T Consensus 792 v~v~p~----------g~~lrl~pp~~~----t~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 792 IFTRPL----------GNVIYLMCGPCT----SPEICRRLLTKLYKRLGE 827 (831)
T ss_dssp EECCCB----------TTEEEEECCTTC----CHHHHHHHHHHHHHHHTT
T ss_pred cEEEec----------CCEEEEECCCCC----CHHHHHHHHHHHHHHHHH
Confidence 999742 268999876654 489999999999988753
No 237
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=63.85 E-value=17 Score=33.39 Aligned_cols=57 Identities=11% Similarity=0.276 Sum_probs=41.5
Q ss_pred eeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCC---ccccHHHHHHHHHHhC----CEEEE
Q 012104 153 YFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP---RDWDYARFRAVADKCG----ALLLC 214 (471)
Q Consensus 153 ~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g---~~~d~~~i~~ia~~~g----~~liv 214 (471)
+++++.++. .+.++++.+.+.+++|++|.++...+. ....+.++.+.+++.| +.+++
T Consensus 157 G~eVi~LG~-----~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~viv 220 (262)
T 1xrs_B 157 MIDAYNLGS-----QVANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLC 220 (262)
T ss_dssp TEEEEECCS-----SBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred CcEEEECCC-----CCCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 678777653 478999999998899999998866665 4445667777777765 45554
No 238
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=61.03 E-value=12 Score=31.55 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=38.4
Q ss_pred ceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhC
Q 012104 152 IYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG 209 (471)
Q Consensus 152 ~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g 209 (471)
.+++++.++. ...++++.+.+.+.+|++|.++...+.....++++.+..++.|
T Consensus 45 ~G~eVi~lG~-----~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 45 AGFEVVYTGL-----RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp TTCEEECCCS-----BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCC-----CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcC
Confidence 4567766543 3688999999988999999877655555556777777777654
No 239
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=53.72 E-value=23 Score=31.02 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=43.1
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhC----CEEEEec
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG----ALLLCDM 216 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g----~~livD~ 216 (471)
..+++++.++. .+.++++.+.+.+.+|++|.++...+.....++++.+..++.| +.+++=+
T Consensus 114 ~~G~~v~~LG~-----~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 114 SGGFTVYNLGV-----DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HTTCEEEECCS-----SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEES
T ss_pred HCCCEEEECCC-----CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEC
Confidence 45577776643 4778999999988899999888655555556777777777754 6666543
No 240
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=52.02 E-value=18 Score=29.47 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=38.1
Q ss_pred cceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhC
Q 012104 151 SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCG 209 (471)
Q Consensus 151 g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g 209 (471)
..+++++.++.+ ..++++.+.+.+.+|++|.++.+.+......+++.+..++.|
T Consensus 29 ~~G~~Vi~lG~~-----~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 29 NAGFNVVNIGVL-----SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp HTTCEEEEEEEE-----ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred HCCCEEEECCCC-----CCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 456788877643 678999998988899999877555544445666666666643
No 241
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=45.02 E-value=1.5e+02 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.308 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++.. ++-++|.. .+..||+.+|.+| ++--++++..+....+..+ .+-......++.
T Consensus 78 i~~IekAI~~-dLglnP~~--------dG~~Iri~iP~lT-----eErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk 143 (184)
T 1ge9_A 78 VPAIEKAIRE-ELNLNPTV--------QGNVIRVTLPPLT-----EERRRELVRLLHKITEEARVRVRNVRREAKEMIEE 143 (184)
T ss_dssp HHHHHHHHHH-HHCSCCEE--------ETTEEEEECCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCCccc--------CCCEEEEeCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888887 88777642 2368999999887 3444444444444333322 111222333333
Q ss_pred hhccCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNKGLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
..+ + ++.+.....++|.+++.+|
T Consensus 144 ~~k-i-seD~~k~~e~~iQkltd~~ 166 (184)
T 1ge9_A 144 LEG-I-SEDEKKRALERLQKLTDKY 166 (184)
T ss_dssp STT-C-CHHHHHHHHHHHHHHHHHH
T ss_pred hcC-C-ChhHHHHHHHHHHHHHHHH
Confidence 322 2 4445666777777776544
No 242
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=43.91 E-value=30 Score=30.54 Aligned_cols=61 Identities=7% Similarity=-0.011 Sum_probs=43.7
Q ss_pred ccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEE--cCCCCCccccHHHHHHHHHHhC----CEEEEe
Q 012104 150 TSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC--GGSAYPRDWDYARFRAVADKCG----ALLLCD 215 (471)
Q Consensus 150 ~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~--~~s~~g~~~d~~~i~~ia~~~g----~~livD 215 (471)
...+++++.++. .+.++++-+.+.+++|++|.+ +...+.....++++.+..++.| +.+++=
T Consensus 117 ~~~G~~Vi~LG~-----~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 117 GANGFQIVDLGV-----DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHTSCEEEECCS-----SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHCCCeEEEcCC-----CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 345678887754 367899988888899999988 6555555556788877777765 455543
No 243
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=41.59 E-value=1.4e+02 Score=26.21 Aligned_cols=88 Identities=18% Similarity=0.301 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++.+.++-++|.. .+..|||.+|.+| ++--+.++..+.......+ .+-..+...++.
T Consensus 99 i~~IekAI~~S~LglnP~~--------dG~~Iri~iP~LT-----eErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk 165 (209)
T 4gfq_A 99 IGDIEKAILKADLGLNPSN--------DGTVIRIAFPALT-----EERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKK 165 (209)
T ss_dssp HHHHHHHHHHHTSSCCCEE--------CSSCEEEECCBCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCc--------CCCceeeeCCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888877642 2357999999887 3444444444444333222 111222233333
Q ss_pred hhc-cCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNK-GLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
+.+ .-.++.+.....++|.+++.+|
T Consensus 166 ~~K~~~isEDe~k~~e~eiQklTd~~ 191 (209)
T 4gfq_A 166 LEKAGEITEDDLRGYTEDIQKETDKY 191 (209)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 321 1123344566666777766544
No 244
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=39.40 E-value=1.8e+02 Score=24.91 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++...++-++|.. .+..|||.+|.+|. +--++++..+.......+ .+-......++.
T Consensus 75 i~~IekAI~~SdLglnP~~--------dG~~Iri~iP~lTe-----ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk 141 (185)
T 1wqg_A 75 LRAIETAIRNSDLGVNPTN--------DGALIRVAVPQLTE-----ERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHR 141 (185)
T ss_dssp HHHHHHHHHHSTTCCCCEE--------CSSCEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccc--------CCCEEEEeCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887642 23579999998873 444444444433332221 111122233333
Q ss_pred hhc-cCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNK-GLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
..+ ...++.+.....++|.+++.+|
T Consensus 142 ~~K~~~iseD~~k~~e~~iQkltd~~ 167 (185)
T 1wqg_A 142 IRKEGEAGEDEVGRAEKDLDKTTHQY 167 (185)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 221 1123445566667777776544
No 245
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=38.66 E-value=1.6e+02 Score=25.23 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++...++-++|.. .+..|||.+|.+|. +--+.++..+.......+ .+-......++.
T Consensus 75 i~~IekAI~~SdLglnP~~--------dG~~Iri~iP~lTe-----ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk 141 (185)
T 1ise_A 75 SPAVEKAIMASDLGLNPNS--------AGSDIRVPLPPLTE-----ERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKA 141 (185)
T ss_dssp HHHHHHHHHTTCTTCCCEE--------SSSEEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccc--------CCCEEEEeCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888777642 24689999998873 444444444433332221 111122233333
Q ss_pred hhc-cCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNK-GLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
+.+ ...++.+.....++|.+++.+|
T Consensus 142 ~~K~~~iseD~~k~~e~~iQkltd~~ 167 (185)
T 1ise_A 142 LLKDKEISEDDDRRSQDDVQKLTDAA 167 (185)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 321 1123445566677777776544
No 246
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=37.75 E-value=53 Score=24.88 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=10.3
Q ss_pred hhhCCCcEEEEcCC
Q 012104 177 ALDFRPKLIICGGS 190 (471)
Q Consensus 177 ~~~~~pklIi~~~s 190 (471)
++.++|++|+++..
T Consensus 74 ~~~~~P~vV~vd~~ 87 (96)
T 1vc3_B 74 ARNLKPTVVLVDER 87 (96)
T ss_dssp HTTCCCEEEEECTT
T ss_pred HhcCCCEEEEECCC
Confidence 44688999988743
No 247
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=37.33 E-value=56 Score=24.79 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=9.7
Q ss_pred hhCCCcEEEEcCC
Q 012104 178 LDFRPKLIICGGS 190 (471)
Q Consensus 178 ~~~~pklIi~~~s 190 (471)
+.++|++|+++..
T Consensus 73 ~~~~P~vV~vd~~ 85 (97)
T 1uhe_A 73 NAHKPSIVLVDEK 85 (97)
T ss_dssp HHCCCEEEEECTT
T ss_pred hcCCCEEEEECCC
Confidence 4588999988743
No 248
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=36.63 E-value=2e+02 Score=24.59 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++...++-++|.. .+..|||.+|.+|. +--+.++..+.......+ .+-......++.
T Consensus 75 i~~IekAI~~SdLglnP~~--------dG~~Iri~iP~lTe-----ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk 141 (185)
T 1dd5_A 75 LSLIEKAINASDLGLNPIN--------DGNVIRLVFPSPTT-----EQREKWVKKAKEIVEEGKIAIRNIRREILKKIKE 141 (185)
T ss_dssp HHHHHHHHHHSSSCCCCEE--------CSSCEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccc--------CCCEEEEeCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888887642 23579999998873 444444444433332221 111122233333
Q ss_pred hhc-cCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNK-GLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
+.+ ...++.+.....++|.+++.+|
T Consensus 142 ~~K~~~iseD~~k~~e~~iQkltd~~ 167 (185)
T 1dd5_A 142 DQKEGLIPEDDAKRLENEIQKLTDEF 167 (185)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 321 1123445566667777776544
No 249
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=36.55 E-value=2e+02 Score=24.58 Aligned_cols=88 Identities=16% Similarity=0.219 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 012104 357 GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL----EIQKEYGKLLKD 432 (471)
Q Consensus 357 ~~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~~g~~~~d~~~l~~~i~~~l~~~~----~~~~~~~~~~~~ 432 (471)
-..+++++...++-++|.. .+..|||.+|.+|. +--+.++..+.......+ .+-......++.
T Consensus 75 i~~IekAI~~SdLglnP~~--------dG~~Iri~iP~lTe-----ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk 141 (185)
T 1is1_A 75 TQKVEKAIMMSDLGLNPMS--------AGTIIRVPLPPLTE-----ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKA 141 (185)
T ss_dssp HHHHHHHHHHTTSSCCCEE--------ETTEEEEECCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCccc--------CCCEEEEeCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887642 23689999998873 444444444433332221 111122233333
Q ss_pred hhc-cCCChHHHHHHHHHHHHHHhcC
Q 012104 433 FNK-GLVNNKDIEALKADVEKFASSF 457 (471)
Q Consensus 433 ~~~-~~~~~~~~~~~~~~v~~~~~~~ 457 (471)
..+ ...++.+.....++|.+++.+|
T Consensus 142 ~~K~~~iseD~~k~~e~~iQkltd~~ 167 (185)
T 1is1_A 142 LLKDKEISEDEDRKAQEEIQKLTDVA 167 (185)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCChhHHHHHHHHHHHHHHHH
Confidence 321 1123445566677777776544
No 250
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=34.60 E-value=63 Score=24.72 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=9.1
Q ss_pred hhCCCcEEEEcC
Q 012104 178 LDFRPKLIICGG 189 (471)
Q Consensus 178 ~~~~pklIi~~~ 189 (471)
+.++|++|+++.
T Consensus 74 ~~~~P~vv~vd~ 85 (102)
T 3plx_B 74 KTFKPKVVFVDE 85 (102)
T ss_dssp HHCCCEEEEECT
T ss_pred hcCCCEEEEECC
Confidence 358899998874
No 251
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=33.50 E-value=56 Score=29.62 Aligned_cols=77 Identities=8% Similarity=0.080 Sum_probs=49.2
Q ss_pred CCEEEEeCCCCCCcccccccccCCccc---eeccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCCcccc
Q 012104 121 HDRIMGLDLPSGGHLTHGYYTSGGKKI---SATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWD 197 (471)
Q Consensus 121 GD~Vl~~~~~~~g~~s~~~~~~~g~~~---~~~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g~~~d 197 (471)
+-+|++..+.--.|-- | ..+ .+...+++++.++.+ +.++++.+.+.+.+|++|.++...++....
T Consensus 123 ~~~vlla~~~gd~Hdi-G------~~iva~~L~~~G~~Vi~LG~~-----vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~ 190 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDI-G------KNIVTALLRANGYNVVDLGRD-----VPAEEVLAAVQKEKPIMLTGTALMTTTMYA 190 (258)
T ss_dssp SCEEEEEECTTCCCCH-H------HHHHHHHHHHTTCEEEEEEEE-----CCSHHHHHHHHHHCCSEEEEECCCTTTTTH
T ss_pred CCeEEEEeCCCCccHH-H------HHHHHHHHHHCCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEEeeccCCHHH
Confidence 4577776665444421 1 111 123456788777654 567888888888899999888655555556
Q ss_pred HHHHHHHHHHhC
Q 012104 198 YARFRAVADKCG 209 (471)
Q Consensus 198 ~~~i~~ia~~~g 209 (471)
++++.+..++.|
T Consensus 191 ~~~~i~~l~~~~ 202 (258)
T 2i2x_B 191 FKEVNDMLLENG 202 (258)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhcC
Confidence 777777676654
No 252
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=33.08 E-value=57 Score=23.78 Aligned_cols=45 Identities=11% Similarity=-0.034 Sum_probs=32.0
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEec
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDM 216 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~ 216 (471)
..+..+.++..+.++|++..+..+. -...+..+|++++++++.-.
T Consensus 16 ~~~v~kai~~gkaklViiA~D~~~~--~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRGSVKEVVVAKDADPI--LTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTTCEEEEEEETTSCHH--HHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcCCeeEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEEC
Confidence 4667777877778888866544432 35678899999999877533
No 253
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=32.66 E-value=30 Score=33.61 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=40.2
Q ss_pred CCC-CCHHHHHHHhhh----CCCcEEEE--cCCCCCc----cccHHHHHHHHHHhCCEEEEeccccch
Q 012104 165 TGY-IDYDKLEEKALD----FRPKLIIC--GGSAYPR----DWDYARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 165 ~~~-iD~~~le~~~~~----~~pklIi~--~~s~~g~----~~d~~~i~~ia~~~g~~livD~a~~~g 221 (471)
+|. -++++++..+.. .++++++| |.+.|+. ..|+..|..+.+..+++|++|.+|+.|
T Consensus 256 ~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~lpV~~D~th~~G 323 (385)
T 3nvt_A 256 RGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHLPVMVDVTHSTG 323 (385)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEEEHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCCCEEEcCCCCCC
Confidence 455 788888776542 35677774 4444432 468888888888889999999999754
No 254
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=30.05 E-value=28 Score=25.73 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCEEEEecc
Q 012104 198 YARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 198 ~~~i~~ia~~~g~~livD~a 217 (471)
-.+|+++|+++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 47899999999999999974
No 255
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=28.95 E-value=1.1e+02 Score=24.11 Aligned_cols=50 Identities=10% Similarity=0.191 Sum_probs=33.7
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCcccc-HHHHHHHHHHhCCEEE-Eeccccch
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWD-YARFRAVADKCGALLL-CDMAHISG 221 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d-~~~i~~ia~~~g~~li-vD~a~~~g 221 (471)
..+..+.++..+.++|++..+..+. + ...|..+|+++|++++ ++.-..+|
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~~--~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWPA--DVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSCT--THHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH--HHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 4566777777788999876544332 3 5678899999999874 44333334
No 256
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=28.36 E-value=99 Score=32.13 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=42.1
Q ss_pred ccceeEEEeeeecCCCCCCCHHHHHHHhhhCCCcEEEEcCCCCC---ccccHHHHHHHHHHhCC
Q 012104 150 TSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYP---RDWDYARFRAVADKCGA 210 (471)
Q Consensus 150 ~g~~~~~~~~~v~~~~~~iD~~~le~~~~~~~pklIi~~~s~~g---~~~d~~~i~~ia~~~g~ 210 (471)
...+++++.++++ +.++++-+.+.+++|++|.++...++ ....++++.+.+++.|.
T Consensus 631 E~aGFEVIDLGvd-----VPpEeIVeAA~EedADVVGLSsLLTt~dihL~~MkevIelLrE~Gl 689 (763)
T 3kp1_A 631 EKYGVEVHYLGTS-----VPVEKLVDAAIELKADAILASTIISHDDIHYKNMKRIHELAVEKGI 689 (763)
T ss_dssp GGGTCEEEECCSS-----BCHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHTTC
T ss_pred HhCCCEEEECCCC-----CCHHHHHHHHHHcCCCEEEEeccccCchhhHHHHHHHHHHHHhcCC
Confidence 4456888877543 67899999999999999988866555 34456788888888764
No 257
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=27.74 E-value=1e+02 Score=24.33 Aligned_cols=46 Identities=7% Similarity=0.202 Sum_probs=28.3
Q ss_pred CCHHHHHHHhhh--------CCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEE
Q 012104 168 IDYDKLEEKALD--------FRPKLIICGGSAYPRDWDYARFRAVADKCGALLL 213 (471)
Q Consensus 168 iD~~~le~~~~~--------~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~li 213 (471)
.|++.+.+.+.+ ++-.-|+++-+......|+.+|.++++++|..++
T Consensus 25 ~d~~~l~~~L~~ki~~aP~FF~~aPVVlDl~~l~~~~dl~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 25 AEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRII 78 (120)
T ss_dssp CCHHHHHHHHHHHHHHSHHHHTTCEEEEEEEECCSSCCHHHHHHHHHTTTCEEE
T ss_pred CCHHHHHHHHHHHHHhChHhhCCCcEEEEccccCChHHHHHHHHHHHHcCCEEE
Confidence 577777766542 1112333331111134789999999999999885
No 258
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=27.69 E-value=2e+02 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCeEeccCCcCCCCCCCCCCeeEEecCCCCC
Q 012104 358 NKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTS 397 (471)
Q Consensus 358 ~~~~~~L~~~gI~v~~~~~p~~~~~~~~~~iRig~~~~t~ 397 (471)
..+++++...++-++|.. .+..|||.+|.+|.
T Consensus 77 ~~IekAI~~SdLglnP~~--------dG~~Iri~iP~lTe 108 (185)
T 1eh1_A 77 KAIEKAIRDSDLGLNPSN--------KGDALYINIPPLTE 108 (185)
T ss_dssp HHHHHHHSSSTTCCCEEE--------ETTEEEEECCCCCT
T ss_pred HHHHHHHHHcCCCCCccc--------CCCEEEEeCCCCCH
Confidence 346788877788777642 23689999999875
No 259
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=26.72 E-value=1.2e+02 Score=23.16 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=35.5
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEE--Eeccccchh
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL--CDMAHISGL 222 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~li--vD~a~~~gl 222 (471)
.++..+.++..+.++|++..+..+. -.+++..+|++++++++ ++....+|.
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~~--~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPTV--RKSEIEYYASLAQISIHHFVGSNVELGT 79 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCHH--HHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH--HHHHHHHHHHHcCCcEEEecCCHHHHHH
Confidence 5677788877788988876443332 26788889999999988 344444554
No 260
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=26.10 E-value=39 Score=33.48 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCCCccccHHHHHHHHHHhCCEEEEecccc
Q 012104 190 SAYPRDWDYARFRAVADKCGALLLCDMAHI 219 (471)
Q Consensus 190 s~~g~~~d~~~i~~ia~~~g~~livD~a~~ 219 (471)
+.+|...+++++.+-|++.|+.||+|.+.-
T Consensus 71 ~~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 100 (496)
T 4gqr_A 71 TRSGNEDEFRNMVTRCNNVGVRIYVDAVIN 100 (496)
T ss_dssp BTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 457888899999999999999999999753
No 261
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=25.74 E-value=1e+02 Score=23.27 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=30.9
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEE
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~liv 214 (471)
.+++.+.++..+.++|++..+..+. -.+.|..+|++++++++.
T Consensus 23 ~~~v~kai~~gka~lViiA~D~~~~--~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 23 EEQVVKAVQNGQVTLVILSSDAGIH--TKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH--HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcEEEEeCCCCHH--HHHHHHHHHHHcCCCEEE
Confidence 5677888887788888865443332 257788899999987653
No 262
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=25.45 E-value=58 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred CCCC-CHHHHHHHhh----hCCCcEEEE---c--C-CCCCccccHHHHHHHHHHhCCEEEEeccccch
Q 012104 165 TGYI-DYDKLEEKAL----DFRPKLIIC---G--G-SAYPRDWDYARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 165 ~~~i-D~~~le~~~~----~~~pklIi~---~--~-s~~g~~~d~~~i~~ia~~~g~~livD~a~~~g 221 (471)
+|.- ++++++..+. ..++++++| . + +++....|+..|..+.+..++++++|..|..|
T Consensus 220 ~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~lpVi~dssHs~G 287 (350)
T 1vr6_A 220 RGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGG 287 (350)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhCCCEEEeCCCCCc
Confidence 4553 7777776654 235788887 2 2 22245578888888888789999999999865
No 263
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=25.37 E-value=67 Score=29.71 Aligned_cols=41 Identities=27% Similarity=0.540 Sum_probs=29.7
Q ss_pred CCCcEEEEc-CCCCCcc---ccHHHHHHHHHHh-CCEEEEeccccc
Q 012104 180 FRPKLIICG-GSAYPRD---WDYARFRAVADKC-GALLLCDMAHIS 220 (471)
Q Consensus 180 ~~pklIi~~-~s~~g~~---~d~~~i~~ia~~~-g~~livD~a~~~ 220 (471)
-++++++|. .+.|++. .|+..|..+.+.. |++|++|..|..
T Consensus 161 Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~ 206 (285)
T 3sz8_A 161 GNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSL 206 (285)
T ss_dssp TCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTC
T ss_pred CCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCcc
Confidence 467888864 3334432 5888888887777 799999999973
No 264
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=24.87 E-value=1.3e+02 Score=23.84 Aligned_cols=51 Identities=8% Similarity=-0.120 Sum_probs=36.5
Q ss_pred CCCHHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEeccc
Q 012104 167 YIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMAH 218 (471)
Q Consensus 167 ~iD~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a~ 218 (471)
.++.++++.++. .+|.++++|.-..+....-+++++..++.|+-+-+-.+.
T Consensus 48 ~l~~~~l~~ll~-~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 48 GVQPADVKEVVE-KGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp CCCHHHHHHHHT-TCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred HCCHHHHHHHhh-CCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 488999999876 579999987444555423467778888899877665543
No 265
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=24.60 E-value=40 Score=25.51 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCEEEEecc
Q 012104 198 YARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 198 ~~~i~~ia~~~g~~livD~a 217 (471)
-.+|+++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 29 ALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHcCCCEEECHH
Confidence 47899999999999999974
No 266
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=24.58 E-value=39 Score=25.77 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEEecc
Q 012104 181 RPKLIICGGSAYPRDWDYARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 181 ~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~livD~a 217 (471)
-|+++.-|. -.--.+|+++|+++|++++.|..
T Consensus 32 aP~VvAKG~-----~~~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 32 APWIIAMGV-----NLRAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp SCEEEEEEE-----HHHHHHHHHHHHHHTCCEEECHH
T ss_pred CCEEEEEeC-----cHHHHHHHHHHHHcCCeEEECHH
Confidence 367665432 12247899999999999999975
No 267
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=24.06 E-value=1.1e+02 Score=23.08 Aligned_cols=43 Identities=12% Similarity=0.038 Sum_probs=30.9
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEE
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~liv 214 (471)
.+++.+.++..+.++|++-.+..+. -.+.|...|++++++++.
T Consensus 24 ~~~v~kai~~gka~lViiA~D~~~~--~~~~i~~~c~~~~vp~~~ 66 (101)
T 3v7q_A 24 EDLVIKEIRNARAKLVLLTEDASSN--TAKKVTDKCNYYKVPYKK 66 (101)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSCHH--HHHHHHHHHHHTTCCEEE
T ss_pred hhhhHHHHhcCceeEEEEecccccc--chhhhcccccccCCCeee
Confidence 5777888887788888865443332 357788899999987654
No 268
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.79 E-value=41 Score=25.69 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCEEEEecc
Q 012104 198 YARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 198 ~~~i~~ia~~~g~~livD~a 217 (471)
-.+|+++|+++|++++.|..
T Consensus 29 A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 29 ALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHcCCCeecCHH
Confidence 47899999999999999974
No 269
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=22.90 E-value=1.1e+02 Score=24.86 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=10.2
Q ss_pred hhhCCCcEEEEcCC
Q 012104 177 ALDFRPKLIICGGS 190 (471)
Q Consensus 177 ~~~~~pklIi~~~s 190 (471)
++.++|++|+++..
T Consensus 115 ~~~~~P~VV~vd~~ 128 (143)
T 1pqh_A 115 ARTWRPNVAYFEGD 128 (143)
T ss_dssp HTTCCCEEEEEETT
T ss_pred hccCCCeEEEECCC
Confidence 35588999988743
No 270
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.88 E-value=1.3e+02 Score=22.62 Aligned_cols=50 Identities=18% Similarity=0.007 Sum_probs=32.9
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEE-E-eccccch
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL-C-DMAHISG 221 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~li-v-D~a~~~g 221 (471)
.+++.+.++..+.++|++-.+. + ..-.+.|..+|++++++++ . +....+|
T Consensus 20 ~~~v~kai~~gka~lViiA~D~-~-~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 20 SNETIRLAKTGGAKLIIVAKNA-P-KEIKDDIYYYAKLSDIPVYEFEGTSVELG 71 (99)
T ss_dssp HHHHHHHHHHTCCSEEEEECCC-C-HHHHHHHHHHHHHTTCCEEEECCCSCGGG
T ss_pred HHHHHHHHHcCCccEEEEeCCC-C-HHHHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 5677778877788888865442 2 1225678889999999864 3 4433344
No 271
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=22.60 E-value=59 Score=31.51 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHhh---h-CCCcEEEEc-CCCCC---ccccHHHHHHHHHHh-CCEEEEeccccch-hhccccCCCCCC-
Q 012104 165 TGYIDYDKLEEKAL---D-FRPKLIICG-GSAYP---RDWDYARFRAVADKC-GALLLCDMAHISG-LVAAQEAANPFE- 233 (471)
Q Consensus 165 ~~~iD~~~le~~~~---~-~~pklIi~~-~s~~g---~~~d~~~i~~ia~~~-g~~livD~a~~~g-lv~~g~~~~p~~- 233 (471)
+|.-++++++.++. . .++++++|. .+.|+ ...|+..|..+.+.+ +++| .|..|..| .... ...+.
T Consensus 165 tGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpV-G~SdHt~G~~~~~---~AAvAl 240 (385)
T 1vli_A 165 TAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVI-GFSDHSEHPTEAP---CAAVRL 240 (385)
T ss_dssp CTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEE-EEEECCSSSSHHH---HHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCE-EeCCCCCCchHHH---HHHHHc
Confidence 45557788776653 2 235777753 44454 345788898898998 8887 68889877 3210 00011
Q ss_pred CccEE--EeCCCCcCCCCCeEE
Q 012104 234 YCHIV--TTTTHKSLRGPRAGM 253 (471)
Q Consensus 234 ~aDiv--~~s~~K~l~GprgG~ 253 (471)
+||++ =++..|++.||.+..
T Consensus 241 GA~iIEkHftldra~~G~D~~~ 262 (385)
T 1vli_A 241 GAKLIEKHFTIDKNLPGADHSF 262 (385)
T ss_dssp TCSEEEEEBCSCTTSSCSSCTT
T ss_pred CCCEEEeCCCccccCCCCchhh
Confidence 67765 567889888876543
No 272
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=22.60 E-value=1.3e+02 Score=26.25 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=29.6
Q ss_pred CCCcEEEEc-C-CCCCccccHHHHHHHHHHhCCEEEE
Q 012104 180 FRPKLIICG-G-SAYPRDWDYARFRAVADKCGALLLC 214 (471)
Q Consensus 180 ~~pklIi~~-~-s~~g~~~d~~~i~~ia~~~g~~liv 214 (471)
.+|-.|+|. - +..|.....+++.++|++||..++.
T Consensus 158 l~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 158 LQPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp SCSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 578888876 3 6778889999999999999998874
No 273
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=21.71 E-value=1.1e+02 Score=27.81 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=39.0
Q ss_pred CCC-CCHHHHHHHhhh----CCCcEEEEc-----CCCCC-ccccHHHHHHHHHHhCCEEEEeccccch
Q 012104 165 TGY-IDYDKLEEKALD----FRPKLIICG-----GSAYP-RDWDYARFRAVADKCGALLLCDMAHISG 221 (471)
Q Consensus 165 ~~~-iD~~~le~~~~~----~~pklIi~~-----~s~~g-~~~d~~~i~~ia~~~g~~livD~a~~~g 221 (471)
++. .+++++...+.. .+++++++- .++|+ ...|+..+..+.+..+.+|+.|..|+.|
T Consensus 137 ~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g 204 (262)
T 1zco_A 137 RGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAG 204 (262)
T ss_dssp CCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTC
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCC
Confidence 344 378888777632 246777643 23443 3357788888887779999999999855
No 274
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=21.70 E-value=1.7e+02 Score=22.28 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=35.5
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEE--eccccchh
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC--DMAHISGL 222 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~liv--D~a~~~gl 222 (471)
.++..+.++..+.++|++-.+..+. -.+++..+|++++++++. +....+|.
T Consensus 27 ~~~v~kai~~gkaklVilA~D~~~~--~~~~i~~~c~~~~ip~~~~~~s~~eLG~ 79 (105)
T 3u5e_c 27 YKSTVKSLRQGKSKLIIIAANTPVL--RKSELEYYAMLSKTKVYYFQGGNNELGT 79 (105)
T ss_dssp HHHHHHHHHTTCCSEEEECTTSCHH--HHHHHHHHHHHHTCEEEECSSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEeCCCHHHHHH
Confidence 5677788887788988876443222 257888999999999983 44444453
No 275
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=21.16 E-value=1.6e+02 Score=22.68 Aligned_cols=51 Identities=12% Similarity=-0.010 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEE-E-eccccchh
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL-C-DMAHISGL 222 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~li-v-D~a~~~gl 222 (471)
.+++.+.++..+.++|++..+. +. .-...|..+|++++++++ + +....+|.
T Consensus 26 ~~~v~kai~~gka~lViiA~D~-~~-~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~ 78 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNI-PK-DLEEDVKYYAKLSNIPVYQHKITSLELGA 78 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTC-BH-HHHHHHHHHHHHTTCCEEECCSCHHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCC-CH-HHHHHHHHHHHHcCCCEEEEcCCHHHHHH
Confidence 5667777877778888876544 21 225677889999998854 3 44333443
No 276
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=20.79 E-value=1.7e+02 Score=25.71 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=28.7
Q ss_pred CCCcEEEEc-CCCCCccccHHHHHHHHHHhCCEEEE
Q 012104 180 FRPKLIICG-GSAYPRDWDYARFRAVADKCGALLLC 214 (471)
Q Consensus 180 ~~pklIi~~-~s~~g~~~d~~~i~~ia~~~g~~liv 214 (471)
..|-.|+|. .+.-|.....+++.++|++||+.++.
T Consensus 166 l~Pa~vicEi~~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 166 FKPAGVLCELTNDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCSCEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEEeCCCCCccCHHHHHHHHHHcCCCEEE
Confidence 578888876 45567788999999999999998864
No 277
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=20.39 E-value=1.4e+02 Score=26.43 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCCcEEEEc-CCCCCccccHHHHHHHHHHhCCEEEE
Q 012104 180 FRPKLIICG-GSAYPRDWDYARFRAVADKCGALLLC 214 (471)
Q Consensus 180 ~~pklIi~~-~s~~g~~~d~~~i~~ia~~~g~~liv 214 (471)
.+|-.|+|. -+.-|.....+++.++|++||+.++.
T Consensus 177 l~Pa~VicEi~~ddG~mar~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 177 LVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLS 212 (227)
T ss_dssp SCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEEEEeCCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 578888876 45568888999999999999998874
No 278
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=20.38 E-value=1.5e+02 Score=22.25 Aligned_cols=51 Identities=20% Similarity=-0.053 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCCCcEEEEcCCCCCccccHHHHHHHHHHhCCEEEE--eccccchh
Q 012104 170 YDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC--DMAHISGL 222 (471)
Q Consensus 170 ~~~le~~~~~~~pklIi~~~s~~g~~~d~~~i~~ia~~~g~~liv--D~a~~~gl 222 (471)
.+++.+.++..+.++|++..+. + ..-...|..+|++++++++. +....+|.
T Consensus 21 ~~~v~kai~~gka~lViiA~D~-~-~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~ 73 (101)
T 1w41_A 21 ARKSIQYAKMGGAKLIIVARNA-R-PDIKEDIEYYARLSGIPVYEFEGTSVELGT 73 (101)
T ss_dssp HHHHHHHHHHTCCSEEEEETTS-C-HHHHHHHHHHHHHHTCCEEEESSCHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEeCCC-C-HHHHHHHHHHHHhcCCCEEEecCCHHHHHH
Confidence 4667777877778888865442 2 12256778899999988553 44444453
No 279
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=20.21 E-value=1.6e+02 Score=24.31 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=34.9
Q ss_pred HHHHHhhhCCCcEEEEcCCCCCc---cccHHHHHHHHHHhCCEEEEecc
Q 012104 172 KLEEKALDFRPKLIICGGSAYPR---DWDYARFRAVADKCGALLLCDMA 217 (471)
Q Consensus 172 ~le~~~~~~~pklIi~~~s~~g~---~~d~~~i~~ia~~~g~~livD~a 217 (471)
++-+++.+.+..+|+....|.+. ..|...|++.|..++++++.-.+
T Consensus 73 ~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~la 121 (152)
T 1b93_A 73 QVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVATNVA 121 (152)
T ss_dssp HHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEESSHH
T ss_pred hHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEeCHH
Confidence 56677777788988866554332 35778999999999999997654
Done!