RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012104
(471 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 518 bits (1336), Expect = 0.0
Identities = 271/460 (58%), Positives = 330/460 (71%), Gaps = 7/460 (1%)
Query: 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 68
L+ D E++D+I+KE RQ G+ELIASENF S AV+EALGS L NKYS G PG RY
Sbjct: 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 68
Query: 69 YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD 128
YGG E IDE+E LC+ RALQ + LDP WGVNVQPYSGSPANFA YTA++EPH RIMGLD
Sbjct: 69 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 128
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188
LP GGHLTHG+ T KKISATSI+FES+ YKVN TGYIDYD+LEE A F PKLII G
Sbjct: 129 LPDGGHLTHGFMT-DKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAG 187
Query: 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248
S Y R+ DY R R +AD+ GA L+ DMAHISGLV A +PFE+CH+VTTTTHK+LRG
Sbjct: 188 TSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRG 247
Query: 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308
RAGMIFYR+G + + +Y+ E IN AVFP LQGGPHNH I +AVALKQA T
Sbjct: 248 CRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMT 307
Query: 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCN 368
P FK Y +QV AN AL L GY +VTGG++NHL+L DLR G G + EK+ + C+
Sbjct: 308 PEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACS 367
Query: 369 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 428
I NKN GD SAL P G+R+GTPA+TSRGLLEKDF+++ F+HR + LT++IQ + G
Sbjct: 368 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGP 427
Query: 429 --LLKDFNKGL----VNNKDIEALKADVEKFASSFDMPGF 462
LK+F + L + + + AL+ +VE FA+ F +PG
Sbjct: 428 RATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPGL 467
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 506 bits (1303), Expect = e-178
Identities = 272/459 (59%), Positives = 334/459 (72%), Gaps = 6/459 (1%)
Query: 8 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNR 67
G SL DPE+ +L+++EK RQCRG+ELIASENF S A +EALGS L NKYSEG PG R
Sbjct: 4 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKR 63
Query: 68 YYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGL 127
YYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGL
Sbjct: 64 YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGL 123
Query: 128 DLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC 187
DLP GGHLTHGY + + ISATSI+FES+PYK+N TG IDY++L A FRP+LII
Sbjct: 124 DLPDGGHLTHGYMSDVKR-ISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182
Query: 188 GGSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLR 247
G SAY R DYAR R V D+ A LL DMAHISGLVAA+ +PF++ IVTTTTHK+LR
Sbjct: 183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 242
Query: 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAS 307
G R+G+IFYRKG K Y FED+INFAVFPSLQGGPHNH I A+AVALKQA
Sbjct: 243 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC 302
Query: 308 TPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLC 367
TP F+ Y+ QV NA A+ + L +GYSLV+GGT+NHLVL DLRP GL G + E++ +L
Sbjct: 303 TPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELV 362
Query: 368 NITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 427
+IT NKN GD SA+ PGG+R+G PA+TSR E DF ++ +F+ V + LE++ +
Sbjct: 363 SITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTA 422
Query: 428 KLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGF 462
K L+DF L+ + + + L+ VE+FA +F MPGF
Sbjct: 423 K-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 460
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 444 bits (1142), Expect = e-155
Identities = 183/450 (40%), Positives = 255/450 (56%), Gaps = 42/450 (9%)
Query: 9 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRY 68
++ D E+ +E+EK RQ IELIASEN+TS V++A GS LTNKY+EG PG RY
Sbjct: 4 EMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRY 63
Query: 69 YGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLD 128
YGG E++D +E L RA + F D QP+SGS ANFA YTA+LEP D ++G+
Sbjct: 64 YGGCEYVDIVEQLAIDRAKELFGADYANV----QPHSGSQANFAVYTALLEPGDTVLGM- 118
Query: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICG 188
+L HG + + G ++ + + +PY ++ +TG+IDY LE++A + +PK+II G
Sbjct: 119 -----NLAHGGHLTHGSPVNFSGKLYNIVPYGID-ATGHIDYADLEKQAKEHKPKMIIGG 172
Query: 189 GSAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRG 248
SAY D+A+ R +AD GA L DMAH++GLVAA NP + H+VTTTTHK+L G
Sbjct: 173 FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAG 232
Query: 249 PRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAST 308
PR G+I + G + K K+N AVFP QGGP H I AVALK+A
Sbjct: 233 PRGGLILAKGGSEELYK------------KLNSAVFPGGQGGPLMHVIAGKAVALKEAME 280
Query: 309 PAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCN 368
P FK Y +QV NA A+ +GY +V+GGT+NHL L DL LTG + + N
Sbjct: 281 PEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRAN 340
Query: 369 ITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG 427
ITVNKN+V D S G+R+GTPA+T RG E + +++ ++ +
Sbjct: 341 ITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVL----------- 389
Query: 428 KLLKDFNKGLVNNKDIEALKADVEKFASSF 457
+ + IE +K V + +
Sbjct: 390 -------DSINDEAVIERIKGKVLDICARY 412
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 440 bits (1133), Expect = e-153
Identities = 194/444 (43%), Positives = 257/444 (57%), Gaps = 44/444 (9%)
Query: 10 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYY 69
L DP++ IE+E++RQ IELIASENF S AV+EA GS LTNKY+EG PG RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 70 GGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDL 129
GG E++D +E L R RA Q F + QP+SG+ AN A Y VLE D ++G++L
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANV----QPHSGAQANMAVYFTVLEHGDTVLGMNL 117
Query: 130 PSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGG 189
GGHLTH G ++ + + + + Y V+ T IDYD + EKA RPKLI+
Sbjct: 118 SHGGHLTH------GSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAA 171
Query: 190 SAYPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGP 249
SAYPR D+A+FR +AD+ GA L+ DMAHI+GLVAA NP Y H VTTTTHK+LRGP
Sbjct: 172 SAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGP 231
Query: 250 RAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTP 309
R GMI + F +I+ A+FP +QGGP H I A AVA +A
Sbjct: 232 RGGMILCQ---------------EQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQD 276
Query: 310 AFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNI 369
FKAYAK+V NA L + L +G++LV+GGT+NHL+L DLRP LTG EK+ D I
Sbjct: 277 DFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGI 336
Query: 370 TVNKNAVFGDS-SALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 428
TVNKN + D S G+RIGT A+T+RG ++ ++I + +
Sbjct: 337 TVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVL------------ 384
Query: 429 LLKDFNKGLVNNKDIEALKADVEK 452
K + + + +E + V
Sbjct: 385 ------KNVGSEQALEEARQRVAA 402
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 161 bits (407), Expect = 6e-45
Identities = 48/454 (10%), Positives = 107/454 (23%), Gaps = 74/454 (16%)
Query: 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLD 93
L + + F G+ + + M G+ + G+ + + +
Sbjct: 35 FLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAESVK---------N 85
Query: 94 PTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISAT--- 150
+ + + G A +++ ++ GLD ++ ++ +
Sbjct: 86 IFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT 145
Query: 151 ----SIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIIC---------GGSAYPRDWD 197
I G D + LE + P + G +
Sbjct: 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLAN 205
Query: 198 YARFRAVADKCGALLLCDMAHISGLVAAQEAANP--------------FEYCHIVTTTTH 243
++A K ++ D A + + ++Y ++ +
Sbjct: 206 LKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAK 265
Query: 244 KSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAL 303
K P G++ + + + +G P + A+
Sbjct: 266 KDAMVPMGGLLCMKDDS------------FFDVYTECRTLCVVQEGFPTYGGLEGGAMER 313
Query: 304 KQASTPAF--KAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLT----- 356
+ A L + L + +V H D L
Sbjct: 314 LAVGLYDGMNLDWLAYRIAQVQYLVDGL--EEIGVVCQQAGGHAAFVDAGKLLPHIPADQ 371
Query: 357 ---GNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTP-----AMTSRGLLEKDFEQI 408
+L + I + F G + + + I
Sbjct: 372 FPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFI 431
Query: 409 GEFLHRAVTL-----TLEIQKEYGKLLKDFNKGL 437
E L E K+L+ F L
Sbjct: 432 IEAFKHVKENAANIKGLTFTYE-PKVLRHFTAKL 464
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 130 bits (327), Expect = 1e-33
Identities = 49/434 (11%), Positives = 111/434 (25%), Gaps = 73/434 (16%)
Query: 52 GSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANF 111
+ ++++ + G+ Y G+ ++++ + + + + + G A
Sbjct: 54 NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAK---------ELFNYDYIIPAHQGRGAEN 104
Query: 112 AAYTAVLEPHDRIMGLDLPSGGHLTHGYYT-----SGGKKISATSIYFESLPYKVNSSTG 166
+ +L+ + P H T G K + G
Sbjct: 105 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG 164
Query: 167 YIDYDKLEEKALDFRPKLIIC---------GGSAYPRDWDYARFRAVADKCGALLLCDMA 217
D KL+E I+ G + +A + G ++ D A
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224
Query: 218 HISGLVA--------------AQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPP 263
+ + ++Y +T + K G++ R +
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284
Query: 264 KKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAV 323
+ GG + A+ L++ + + Y
Sbjct: 285 TLARQRCVPM---------EGFVTYGGLAGRDMAAMVQGLEEGT---EEEYLHYRIGQVK 332
Query: 324 ALGNYLTGKGYSLVTGGTEN------HLVLWDLRPLGLTGNK-VEKLCDLCNITVNKNAV 376
LG+ L G + + ++ + + L + +
Sbjct: 333 YLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGS 392
Query: 377 F--------GDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLT-----LEIQ 423
F G+ +R+ R + I + L LE +
Sbjct: 393 FLLGRDPATGEQKHADMEFMRLTIAR---RVYTNDHMDYIADALIGLKEKFATLKGLEFE 449
Query: 424 KEYGKLLKDFNKGL 437
E +L+ F L
Sbjct: 450 YE-PPVLRHFTARL 462
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 126 bits (317), Expect = 2e-32
Identities = 55/471 (11%), Positives = 107/471 (22%), Gaps = 63/471 (13%)
Query: 34 IELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGN-------EFIDEIENLC---- 82
++ S F G K+ G ++G + +L
Sbjct: 7 LKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEG 66
Query: 83 -----RSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTH 137
A + ++ D T S AN +A++ D ++
Sbjct: 67 PAVAAEKHAARVYNADKT----YFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS 122
Query: 138 GYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPK----------LIIC 187
+GG+ + + D K+ E A P+ +I
Sbjct: 123 ALAMAGGRPV-YLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQ 181
Query: 188 GGSAYPRDWDYARFRAVADKCGALLLCDMAHISG----------LVAAQEAANPFEYCHI 237
G+ ++ + D A + + P + I
Sbjct: 182 LGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGII 241
Query: 238 VTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPSLQGGPHNHQIG 297
V + HK G ++K + Y N + + P
Sbjct: 242 VVQSVHKQQAGFSQTSQIHKKDSHIKGQ-----LRYCDHKHFNNSFNLFMSTSPFYPMYA 296
Query: 298 ALAVALKQASTPAFKAYAKQVKANA-------VALGNYLTGKGYSLVTGGTENHLVLWDL 350
AL V A + + + G+ +V G D+
Sbjct: 297 ALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDM 356
Query: 351 RPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGE 410
+ N + D P + TP + +DF
Sbjct: 357 ANNIDYWRFEKGAKWHAYEGYGDNQYYVD-----PNKFMLTTPGINPETGDYEDFGVPAT 411
Query: 411 FLHRAVTLTLEIQKE---YGKLLKDFNKGLVNNKDIEALKADVEKFASSFD 458
+ I E +L + L + + +
Sbjct: 412 IVAN-YLRDHGIIPEKSDLNSILFLMTPA-ETPAKMNNLITQLLQLQRLIE 460
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 111 bits (278), Expect = 3e-27
Identities = 57/429 (13%), Positives = 103/429 (24%), Gaps = 86/429 (20%)
Query: 59 YSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVN--VQPYSGSPANFAAYTA 116
++ M G+ Y G+E +E + +G V + G A
Sbjct: 61 WAGMMIGDEAYAGSENFYHLEKTVKEL-----------FGFKHIVPTHQGRGAENLLSQL 109
Query: 117 VLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEK 176
++P + G T + G G ID +KL
Sbjct: 110 AIKPGQYVAG---NMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATL 166
Query: 177 ALDFRPKLIIC---------GGSAYPRDWDYARFRAVADKCGALLLCDMAHIS------- 220
+ + I G + +A G + D
Sbjct: 167 IKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIK 226
Query: 221 -------GLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVY 273
+ F Y T + K G +
Sbjct: 227 EQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE-------------- 272
Query: 274 DFEDKINFAV----FPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329
+ V GG + A+A+ L++A Y + LG+ L
Sbjct: 273 EMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQY---EYIEHRVKQVRYLGDKL 329
Query: 330 TGKGYSLVTGGTENHLVLWDLRPL--------GLTGNKVEKL--------CDLCNITVNK 373
G +V T H V D R + + + ++ +
Sbjct: 330 REAGVPIVE-PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGR 388
Query: 374 NAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL----HRAVTLT-LEIQKEYGK 428
+ G++ VR+ P R + + + + + L E K
Sbjct: 389 SKETGENHRPKLETVRLTIPR---RVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYE-PK 444
Query: 429 LLKDFNKGL 437
L+ F
Sbjct: 445 QLRFFTARF 453
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 54.0 bits (128), Expect = 2e-08
Identities = 47/380 (12%), Positives = 94/380 (24%), Gaps = 46/380 (12%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
S+ T + + +A+ A G+ YG + I+E+E R
Sbjct: 5 RSDTVTKPTEEMRKAMAQAEV--------GDDVYGEDPTINELE-----RLAAETFGKEA 51
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHL-THGYYTSGGKKISATSIYF 154
V SG+ N + A + D ++ G
Sbjct: 52 ALFVP----SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKN 107
Query: 155 ESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLC 214
++ +L G + +A + G +
Sbjct: 108 GAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHI 167
Query: 215 DMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYD 274
D A I A + P G+V
Sbjct: 168 DGARIFNASIASGVPVKEYAGY-----------------ADSVMFCLSKGLCAPVGSVVV 210
Query: 275 FEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGY 334
+ + + + + A + K+ NA L L GY
Sbjct: 211 GDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGY 270
Query: 335 SLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPA 394
S+ + ++V+ L + + + + N A++ +R+ T
Sbjct: 271 SVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLAN---------AVSDTEIRLVTHK 321
Query: 395 MTSRGLLEKDFEQIGEFLHR 414
SR +E+ + +
Sbjct: 322 DVSRNDIEEALNIFEKLFRK 341
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 47.6 bits (112), Expect = 2e-06
Identities = 33/286 (11%), Positives = 74/286 (25%), Gaps = 38/286 (13%)
Query: 98 GVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESL 157
P S + +A + + + + + +H + E++
Sbjct: 131 HAIATPISTGMSISLCLSAARKKYGSNVVI----YPYASHKSPIKAVSFVGMNMRLVETV 186
Query: 158 PYKVNSSTGYIDYDKLEEK-----ALDFRPKLII-CGGSAYPRDWDYARFRAVADKCGAL 211
+ Y+ + +E L RP ++ D + +
Sbjct: 187 L---DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIP 243
Query: 212 LLCDMAHISGLVAAQEAANPF--EYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPE 269
+ + A+ E V +++ K+L P G + Y
Sbjct: 244 HIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDA--------- 294
Query: 270 GAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYL 329
+F +I+ + P + + +L + K K L +
Sbjct: 295 ----EFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS 350
Query: 330 TGKGYSLVTGGTENHLVLW----------DLRPLGLTGNKVEKLCD 365
G + + + L L +TG + K D
Sbjct: 351 KKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTD 396
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 46.7 bits (109), Expect = 3e-06
Identities = 50/382 (13%), Positives = 92/382 (24%), Gaps = 49/382 (12%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
+S+N S V +AL S YG +E +++ + + F D
Sbjct: 8 SSDNIAGASPEVAQAL----VKHSSGQAGP---YGTDELTAQVKR----KFCEIFERDVE 56
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYY--TSGGKKISATSIY 153
+G+ AN +A+ P I + G S G K+
Sbjct: 57 ----VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP 112
Query: 154 FESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLL 213
L + + + V L
Sbjct: 113 AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLH 172
Query: 214 CDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVY 273
D + + + + S + G++
Sbjct: 173 MDGSRFANALVSLG--CSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTS-------- 222
Query: 274 DFEDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKG 333
+ G + A + + A++ A A L L G G
Sbjct: 223 ---LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLG 279
Query: 334 YSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTP 393
V GGTE +++ L + + + P VR T
Sbjct: 280 GVEVLGGTEANILFCRL------DSAMIDALLKAGFGFYHD-------RWGPNVVRFVTS 326
Query: 394 AMTSRGLLEKDFEQIGEFLHRA 415
T+ +D + + + A
Sbjct: 327 FATT----AEDVDHLLNQVRLA 344
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 36.8 bits (83), Expect = 0.005
Identities = 37/377 (9%), Positives = 77/377 (20%), Gaps = 49/377 (12%)
Query: 38 ASENFT--SFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPT 95
++ +++ + G YG + + +
Sbjct: 5 VNDYSVGMHPKILDLM----ARDNMTQHAG---YGQDSHCAKA----ARLIGELLERPDA 53
Query: 96 QWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFE 155
G+ N A + L P + ++ L G + G K+
Sbjct: 54 DV---HFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDG 110
Query: 156 SLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRDWDYARFRAVADKCGALLLCD 215
L S + + + G+ Y + + + L L
Sbjct: 111 KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG 170
Query: 216 MAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDF 275
S L + + + + +
Sbjct: 171 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDAL------------ 218
Query: 276 EDKINFAVFPSLQGGPHNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYS 335
K N +G F A L L G
Sbjct: 219 --KPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIR 276
Query: 336 LVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAM 395
L N L L + +L + ++ + +R+ T
Sbjct: 277 LAWPSASNQL------FPILENTMIAELNNDFDMYT------VEPLKDGTCIMRLCTSWA 324
Query: 396 TSRGLLEKDFEQIGEFL 412
T ++ F+
Sbjct: 325 TEE-------KECHRFV 334
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 30.5 bits (67), Expect = 0.41
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 311 FKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPL 353
+ + V + AVA G+ L + TG + +W + +
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens)
[TaxId: 9606]}
Length = 187
Score = 29.1 bits (65), Expect = 0.93
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 395 MTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGL----VNNKDIEALKADV 450
+ LL+ E+I FL++ L +Y ++ N + V+ + L
Sbjct: 22 LVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQ 81
Query: 451 --EKFASSFDMPG 461
+F SF +PG
Sbjct: 82 ALRQFLWSFRLPG 94
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 28.2 bits (62), Expect = 1.5
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340
+S +Y AV LGN L + LV GG
Sbjct: 15 SSQGKKSSYQDA----AVDLGNELVSRNIDLVYGG 45
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 28.3 bits (61), Expect = 1.9
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 333 GYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGG 387
G + + + + +W++ T + + I + + AL
Sbjct: 250 GTKIASASADKTIKIWNVA----TLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 26.8 bits (59), Expect = 2.8
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 395 MTSRGLLEK-DFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEA-LKADVEK 452
RG L+K + +I +F + + ++ LL +++ +A LK V
Sbjct: 68 AGVRGYLDKLEPSKITKFENA---FLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTN 124
Query: 453 FASSF 457
F + F
Sbjct: 125 FLAGF 129
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase
{Bacteriophage T4 [TaxId: 10665]}
Length = 241
Score = 27.6 bits (60), Expect = 3.4
Identities = 6/47 (12%), Positives = 17/47 (36%)
Query: 407 QIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKF 453
+ + E G ++D + + N+ +E L + ++
Sbjct: 191 TVIHVVRPGQKSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNT 237
>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange
factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 228
Score = 27.5 bits (60), Expect = 3.5
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 13 ETVDPEI-HDLIEKEKRRQCRGIELIASE 40
TV ++ L ++E RQ EL +E
Sbjct: 5 HTVGKDVVAGLTQREIDRQEVINELFVTE 33
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain
3 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 129
Score = 26.4 bits (58), Expect = 3.6
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 394 AMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEA-LKADVEK 452
T+ L + +Q+ ++L L ++ + + + ++ EA LK +++
Sbjct: 68 TGTNGYLDSLELDQVRKYLVE---LRTYVKTNKPEFQEIISSTKTFTEEAEALLKEAIQE 124
Query: 453 FASSF 457
F
Sbjct: 125 QMERF 129
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 181
Score = 27.0 bits (59), Expect = 3.9
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 306 ASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGG 340
+ + + ++ A+ LGN L + LV GG
Sbjct: 11 SHSGHREVFSDA----AIELGNELVKRKIDLVYGG 41
>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 309
Score = 26.9 bits (59), Expect = 5.8
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 342 ENHLVLWDLRP--LGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPA 394
++++ D++ + L+ + KL D FG +S +AP +GTP
Sbjct: 133 SHNMIHRDVKAGNILLSEPGLVKLGD-----------FGSASIMAPANSFVGTPY 176
>d1m6ba1 c.10.2.5 (A:8-165) Receptor protein-tyrosine kinase Erbb-3
extracellular domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 158
Score = 26.1 bits (57), Expect = 6.4
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 326 GNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNK--------VEKLCDLCNI-TVNKNAV 376
G + +++ N LR L LT +EK LC++ T++ +
Sbjct: 81 GTQVYDGKFAIFVMLNYNTNSSHALRQLRLTQLTEILSGGVYIEKNDKLCHMDTIDWRDI 140
Query: 377 FGDSSA 382
D A
Sbjct: 141 VRDRDA 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.408
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,809,498
Number of extensions: 85602
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 26
Length of query: 471
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,185,626
Effective search space: 452909132
Effective search space used: 452909132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)