Query 012105
Match_columns 471
No_of_seqs 51 out of 53
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 21:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kw0_A Cysteine peptidase; str 99.0 1.2E-08 4E-13 95.3 15.6 157 209-453 37-204 (214)
2 2if6_A Hypothetical protein YI 98.8 1.9E-08 6.6E-13 90.5 10.1 101 208-325 1-101 (186)
3 4h4j_A Hypothetical protein; P 47.0 31 0.0011 33.1 6.1 72 209-299 168-239 (240)
4 2jyx_A Lipoprotein SPR; soluti 38.0 33 0.0011 29.3 4.4 52 206-282 62-114 (136)
5 2im9_A Hypothetical protein; s 32.2 82 0.0028 31.8 6.7 80 210-300 239-322 (333)
6 2p1g_A Putative xylanase; stru 25.9 1.2E+02 0.0043 29.3 6.5 56 210-282 170-226 (249)
7 3gt2_A Putative uncharacterize 20.7 42 0.0014 28.9 1.9 22 416-437 53-74 (142)
8 3jxo_A TRKA-N domain protein; 18.3 1E+02 0.0035 23.3 3.5 28 209-239 58-85 (86)
9 3nek_A Nitrogen repressor-like 18.0 47 0.0016 32.0 1.8 58 384-447 59-121 (238)
10 3j21_U 50S ribosomal protein L 16.3 44 0.0015 29.3 1.0 16 293-308 26-41 (121)
No 1
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=98.97 E-value=1.2e-08 Score=95.31 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=110.2
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHhHhcc-
Q 012105 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD- 287 (471)
Q Consensus 209 ~~dIhsGDfL~iskirgr~dG~d~li~W~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd- 287 (471)
.+++++||.|.+. |+ +.++.+|+++|++..+|.+|.+.+ +++++|+|+.. ..+|+..|+++|.+. ++.
T Consensus 37 ~~~l~~GDlif~~---~~-~~~s~~I~~~T~s~~sHvgI~~~~-~~~~~vieA~~-----~~GV~~~~L~~fl~~-~~~~ 105 (214)
T 3kw0_A 37 INVLKTGDIFLCS---GN-YLVSKLIKKVSESMFSHTGIIVKW-GEHTLIMESVE-----DDGVRIVPLEHYIKN-YENS 105 (214)
T ss_dssp TTTCCTTCEEEEE---EC-SHHHHHHHHHTTSSCCEEEEEEEE-TTEEEEEEEET-----TTEEEEEETHHHHHC-GGGS
T ss_pred HhhCCCCCEEEEe---CC-CcHHHHHHHhcCCCCcEEEEEEec-CCceEEEEecC-----CCCEEEecHHHHHHH-hhcc
Confidence 4799999999995 34 778999999999999999999987 78999999953 357999999999751 211
Q ss_pred --CCCCceEeec--------CChhHHhhcchhHHHHHHHhhcCCcceeeeeeEEEeecCCCCCCCCcChhHHHHHHHHhh
Q 012105 288 --DSNPQIALLP--------LHPDVRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTMADNYPPPLDAHLVVSVMSMWT 357 (471)
Q Consensus 288 --~a~~~ValLP--------L~pe~RakFN~TAAwef~~~~eG~PYGYhN~iFsWIDT~~dNyPppLda~~v~~v~s~~~ 357 (471)
..+-.+++.. |.++.++ ++.+|+++..|+||.+.+. +.+..
T Consensus 106 ~~~y~~~i~V~Rl~~~~~v~lt~~~~~-----~l~~~a~~~lGkpYd~~~~------------------------~~l~~ 156 (214)
T 3kw0_A 106 NNRYNGSLFIARHELLQNVNDDSEMIR-----NLIKVGFSLLNSGYDKNEI------------------------AQIVA 156 (214)
T ss_dssp SSCCSEEEEEEEEGGGTTSCTTSHHHH-----HHHHHHHHHCCSCCCHHHH------------------------HHHHH
T ss_pred cccccCceEEEEeccccccCCCHHHHH-----HHHHHHHHhcCCCCCcHHH------------------------HHHHH
Confidence 2223577754 5555554 5899999999999984321 11111
Q ss_pred hcChhHHHHHHHHHHhhhcCCCCCChhhhHHHHHHcCCChhhhccccccCcceecCCCcchHHHHHHHHHHhcCCCCCCc
Q 012105 358 RVQPAYAANMWNEALNKRLGTEDLDLHGILDEIEKRGISFDQLLTIPEQDEWVYSDGKSTTCVAFILEMYKEAGVFGPIS 437 (471)
Q Consensus 358 ~~~P~~a~~mwneALNKRLGT~gL~l~ei~~ea~krgisf~~LlaiPEqD~W~YsDG~S~vCsafV~~myKAAGlFg~l~ 437 (471)
|. ..|+.+ -.+...+.||-||+.+|+++|+--.
T Consensus 157 -----------------r~---------------~~~~~~-------------~~~~~~~~CSelv~~a~~~~g~~~~-- 189 (214)
T 3kw0_A 157 -----------------RI---------------GLGIGR-------------HEDNNEYICSEFVNECFKKIGVEFL-- 189 (214)
T ss_dssp -----------------HH---------------HHTCCC-------------CSSCCCCCHHHHHHHHHHTTTCCCC--
T ss_pred -----------------hh---------------hhcccc-------------cCCCCcEEeHHHHHHHHHHcCCCcc--
Confidence 10 001110 1366778999999999999998542
Q ss_pred Cceeeccccchhhhhh
Q 012105 438 NSIQVTEFTVSIKLFG 453 (471)
Q Consensus 438 ~sIq~tEFT~kD~~~~ 453 (471)
.-+..-+||.|+.-.
T Consensus 190 -~~~~~~v~P~dl~~s 204 (214)
T 3kw0_A 190 -TDSEGFIFPEHIAAD 204 (214)
T ss_dssp ------CCCHHHHHHC
T ss_pred -CCCCCEEecHHHhCC
Confidence 235677999998754
No 2
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=98.80 E-value=1.9e-08 Score=90.47 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHhHhcc
Q 012105 208 NPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKD 287 (471)
Q Consensus 208 ~~~dIhsGDfL~iskirgr~dG~d~li~W~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd 287 (471)
+++++|+||.|... |+ +.+..+|+.+|++..+|.+|.+.+ +|+.+|+|+.. +++..+.++|.. .
T Consensus 1 ~~~~l~~GDlvf~~---~~-~~~s~~I~~~t~~~~sHvgI~~~~-~~~~~viea~~-------gV~~~~l~~f~~----~ 64 (186)
T 2if6_A 1 SLWQPQTGDIIFQI---SR-SSQSKAIQLATHSDYSHTGMLVMR-NKKPYVFEAVG-------PVKYTPLKQWIA----H 64 (186)
T ss_dssp --CCCCTTCEEEEC---CC-STTHHHHHHHHTSSCCEEEEEEEE-TTEEEEEEESS-------SEEEEEHHHHHH----T
T ss_pred CcccCCCCCEEEEE---cC-CchHHHHHHHcCCCCceEEEEEEe-CCcEEEEEeCC-------CeEEEEHHHHHh----h
Confidence 46789999998764 33 568899999999999999999985 78899999972 599999999965 2
Q ss_pred CCCCceEeecCChhHHhhcchhHHHHHHHhhcCCccee
Q 012105 288 DSNPQIALLPLHPDVRAKFNSTAAWEYARSMSGKPYGY 325 (471)
Q Consensus 288 ~a~~~ValLPL~pe~RakFN~TAAwef~~~~eG~PYGY 325 (471)
..+-++++.+++.++.. -...+|.+++++..|+||.|
T Consensus 65 ~~~~~~~v~Rl~~~ls~-~~~~~~~~~a~~~~G~pY~~ 101 (186)
T 2if6_A 65 GEKGKYVVRRVEGGLSV-EQQQKLAQTAKRYLGKPYDF 101 (186)
T ss_dssp SGGGCEEEEEETTCCCH-HHHHHHHHHHGGGTTCCBCT
T ss_pred ccCCcEEEEEeCCCCCH-HHHHHHHHHHHHHcCCcCCc
Confidence 21236888888753211 12346788999999999997
No 3
>4h4j_A Hypothetical protein; PF07313 family protein, DUF 1460, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.15A {Bacteroides uniformis}
Probab=47.05 E-value=31 Score=33.08 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=49.4
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHhHhccC
Q 012105 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDD 288 (471)
Q Consensus 209 ~~dIhsGDfL~iskirgr~dG~d~li~W~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~kd~ 288 (471)
.+.||+||.++|.+= - .|--..|.-++.|. +|+|+...--. ..++-+|...|..||.. .+.
T Consensus 168 ~~~l~~GDiIai~t~---~----------~GLDvsH~Giai~~-~~~l~l~hASS--~~~~vvv~d~pl~~Yl~---~~~ 228 (240)
T 4h4j_A 168 LPWIKDGDIIAITTN---T----------PGLDVAHMGIAFYA-DNKLLLVHASS--TDKKVVVSKVPLSQMLK---DNN 228 (240)
T ss_dssp CTTSCTTCEEEEEEC---S----------TTCSEEEEEEEEEE-TTEEEEEEEET--TTTEEEECSSCHHHHHH---HCT
T ss_pred HhhCCCCcEEEEEec---C----------CCceEEEEEEEEEE-CCeEEEEEcCC--CCCceEEcCccHHHHHh---hCC
Confidence 367999999999863 1 35566899999996 88899987322 22344566789999974 233
Q ss_pred CCCceEeecCC
Q 012105 289 SNPQIALLPLH 299 (471)
Q Consensus 289 a~~~ValLPL~ 299 (471)
+.+-|.++..+
T Consensus 229 ~~~GI~V~R~k 239 (240)
T 4h4j_A 229 KWTGIRVLRMK 239 (240)
T ss_dssp TEEEEEEEEEC
T ss_pred CCCCeEEEEeC
Confidence 44456666543
No 4
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=38.00 E-value=33 Score=29.34 Aligned_cols=52 Identities=12% Similarity=0.447 Sum_probs=33.1
Q ss_pred cCCCCCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhH-HHH
Q 012105 206 TINPEDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDE-WWE 282 (471)
Q Consensus 206 ~i~~~dIhsGDfL~iskirgr~dG~d~li~W~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pwee-W~~ 282 (471)
.++.+++++||.|... +|...+|..|.+= +|+ ++++... .+|+..+.++ ||.
T Consensus 62 ~v~~~~l~pGDLvff~----------------~~~~~~HVgIy~G--~g~--~IHa~~~-----~gV~i~~l~~~yw~ 114 (136)
T 2jyx_A 62 SVSRSNLRTGDLVLFR----------------AGSTGRHVGIYIG--NNQ--FVHASTS-----SGVIISSMNEPYWK 114 (136)
T ss_dssp ECCTTTCCTTEEEEEE----------------CSSSSEEEEEEEE--TTE--EEEEETT-----TEEEEEETTSHHHH
T ss_pred EcchHhCCCCCEEEEC----------------CCCCCCEEEEEEc--CCE--EEEECCC-----CCEEEEECCchHhH
Confidence 5677899999998765 2234789998883 564 4554332 2356666654 554
No 5
>2im9_A Hypothetical protein; structural genomics, PSI-2, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.67A {Legionella pneumophila subsp} SCOP: d.3.1.13
Probab=32.17 E-value=82 Score=31.84 Aligned_cols=80 Identities=14% Similarity=0.224 Sum_probs=50.2
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHh-hcCcCccceeEEeecCCCcEEEEecCCCCcccccceeecchhHHHHhHh--c
Q 012105 210 EDVHSGDFLAVSKIRGRWGGFETLEKW-VTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIVVIPWDEWWELAL--K 286 (471)
Q Consensus 210 ~dIhsGDfL~iskirgr~dG~d~li~W-~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq~~pweeW~~~~~--k 286 (471)
+.|++||.|+|.+= .| .|.++ ++|--..|+-++.|. +|+|+..---.. .+ .|..-|..|+..... +
T Consensus 239 ~~I~~GDII~I~t~--~~----~l~~~ig~GLDVsHvGiai~~-~g~l~lrhASS~---~~-kVVd~pL~~Yl~~~~~~~ 307 (333)
T 2im9_A 239 SQIPNGAVIEIIRP--NW----DLRQQIGTELDISHLGFAIWI-NNELFFRQASSQ---YG-KVVDVSLIDYLDKARSSP 307 (333)
T ss_dssp TTSCTTCEEEEEEE--EE----CCHHHHSSCEEEEEEEEEEEE-TTEEEEEEEETT---TT-EEEEEEHHHHHHHHTTCS
T ss_pred hhCCCCCEEEEEec--Cc----cccccccCCCcceEEEEEEEE-CCeEEEEecCCC---CC-eEEeccHHHHHhhcccCC
Confidence 78999999999962 11 11122 246677899999997 789998753333 22 455888999986311 2
Q ss_pred cCCCCc-eEeecCCh
Q 012105 287 DDSNPQ-IALLPLHP 300 (471)
Q Consensus 287 d~a~~~-ValLPL~p 300 (471)
...|.. +.++|++|
T Consensus 308 s~~GI~V~r~~p~~~ 322 (333)
T 2im9_A 308 TIKGINIQVVLPEKP 322 (333)
T ss_dssp SCCEEEEEEECCSSC
T ss_pred CccceEEEEecCCCc
Confidence 222333 23456665
No 6
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Bacteroides fragilis}
Probab=25.88 E-value=1.2e+02 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=40.4
Q ss_pred CCCCCCCEEEEEeecccCCchhhHHHhhcCcCccceeEEeecCCCcEEEEecCCCCccccccee-ecchhHHHH
Q 012105 210 EDVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDKEGNLWVGESGHENEKGEEIIV-VIPWDEWWE 282 (471)
Q Consensus 210 ~dIhsGDfL~iskirgr~dG~d~li~W~tGa~aGHtav~Lrd~dGeL~v~ES~~~~~~~~~~Iq-~~pweeW~~ 282 (471)
+.|++||.|+|..= ..|--..|+-++.|. +|+|+..-.-..- +++|- ..|..|++.
T Consensus 170 ~~l~~GDiI~i~t~-------------~~GLDVsHvGi~i~~-~~~l~f~hASs~~---~kVv~s~~~l~~Y~~ 226 (249)
T 2p1g_A 170 PWIKNGDIIALTTN-------------TPGLDVSHMGIAIYI-KGQLHLLHASSKE---GKVVVGKTALSQMLK 226 (249)
T ss_dssp TTSCTTCEEEEEEC-------------STTCSEEEEEEEEEE-TTEEEEEEEETTT---TEEEECSSCHHHHHH
T ss_pred hcCCCCCEEEEEeC-------------CCCCceeEEEEEEEE-CCeEEEEEcCCCC---CeEEECCcCHHHHHh
Confidence 77999999999853 145567899999997 8999988543332 23333 359999975
No 7
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=20.68 E-value=42 Score=28.90 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHhcCCCCCCc
Q 012105 416 STTCVAFILEMYKEAGVFGPIS 437 (471)
Q Consensus 416 S~vCsafV~~myKAAGlFg~l~ 437 (471)
..-||.||..+|+++|+-=|-+
T Consensus 53 g~DCSGlv~~~~~~~Gi~lpr~ 74 (142)
T 3gt2_A 53 GFDASGLMQYAYAGAGIKLPRS 74 (142)
T ss_dssp EBCHHHHHHHHHHTTTCCCCSS
T ss_pred cEEcHHHHHHHHHHcCCCCCCC
Confidence 3679999999999999765543
No 8
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=18.34 E-value=1e+02 Score=23.27 Aligned_cols=28 Identities=32% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCCCCCCCEEEEEeecccCCchhhHHHhhcC
Q 012105 209 PEDVHSGDFLAVSKIRGRWGGFETLEKWVTG 239 (471)
Q Consensus 209 ~~dIhsGDfL~iskirgr~dG~d~li~W~tG 239 (471)
..-|++||.|.|. |+-+.++.+.+..+|
T Consensus 58 ~~~l~~GD~l~v~---g~~~~~~~~~~~~~~ 85 (86)
T 3jxo_A 58 DTEILSGDKLYVI---VSAEAKETVEETLLG 85 (86)
T ss_dssp TCBCCTTCEEEEE---EETTTHHHHHHHHC-
T ss_pred CCEECCCCEEEEE---ECHHHHHHHHHHHcC
Confidence 5679999999987 455777888776654
No 9
>3nek_A Nitrogen repressor-like protein MJ0159; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Methanocaldococcus jannaschii}
Probab=17.96 E-value=47 Score=32.05 Aligned_cols=58 Identities=24% Similarity=0.441 Sum_probs=47.4
Q ss_pred hhhHHHHHHcCCChhhhccccccCcceecCCCcchHHHHHHHHHHhcCC-----CCCCcCceeeccccc
Q 012105 384 HGILDEIEKRGISFDQLLTIPEQDEWVYSDGKSTTCVAFILEMYKEAGV-----FGPISNSIQVTEFTV 447 (471)
Q Consensus 384 ~ei~~ea~krgisf~~LlaiPEqD~W~YsDG~S~vCsafV~~myKAAGl-----Fg~l~~sIq~tEFT~ 447 (471)
-++++++.+.|+++..++.|-|.++=+ |-.|+||.=+-+++-..|+ ||-+ +|+.+..|
T Consensus 59 l~i~~~v~~~g~~is~~v~i~~~~~~i---gI~TvCSiTiDGvLlk~GIpv~p~yGGl---lei~~~~p 121 (238)
T 3nek_A 59 FDILKEAYKKGLGISDRFGIVEENDRI---KIQTICAVTLDGIFLRNSVPLIPKYGGI---LEITEDKE 121 (238)
T ss_dssp HHHHHHHHHTTCSSSSEEEEEECSSEE---EEEEECTHHHHHHHHHTTCCEEEEEEEE---EEECSSCE
T ss_pred HHHHHHHHHcCCcccCceEEecCCCeE---EEEEeeeeEEhhhHHhCCCCccCccceE---EEEECCCC
Confidence 478899999999999999999988754 7789999999999999997 4544 56555444
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=16.30 E-value=44 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=13.0
Q ss_pred eEeecCChhHHhhcch
Q 012105 293 IALLPLHPDVRAKFNS 308 (471)
Q Consensus 293 ValLPL~pe~RakFN~ 308 (471)
+---||++|+|+|||-
T Consensus 26 ~msa~LSkeLR~ky~~ 41 (121)
T 3j21_U 26 LMSAPLSRELREKYKV 41 (121)
T ss_dssp GSEEEBCHHHHHHTCC
T ss_pred hhcCcCCHHHHHHhCC
Confidence 4456999999999974
Done!