Query 012107
Match_columns 471
No_of_seqs 271 out of 1551
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 02:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1csh_A Citrate synthase; lyase 100.0 2E-121 5E-126 960.9 46.1 432 38-469 2-434 (435)
2 3hwk_A Methylcitrate synthase; 100.0 1E-102 5E-107 810.7 36.7 373 54-463 25-406 (414)
3 3msu_A Citrate synthase; helix 100.0 1E-101 5E-106 805.7 34.8 362 67-462 46-422 (427)
4 2h12_A Citrate synthase; acido 100.0 3E-101 1E-105 807.1 35.1 373 55-463 38-426 (436)
5 2ibp_A Citrate synthase; disul 100.0 2E-101 8E-106 802.9 33.6 376 61-462 9-398 (409)
6 3l96_A Citrate synthase; quate 100.0 5E-102 2E-106 809.6 23.6 365 67-462 37-415 (426)
7 2p2w_A Citrate synthase; trans 100.0 8E-100 3E-104 782.5 35.6 351 74-462 1-352 (367)
8 3tqg_A 2-methylcitrate synthas 100.0 4E-100 1E-104 785.1 32.8 354 68-462 3-363 (375)
9 2c6x_A Citrate synthase 1; tri 100.0 1.4E-99 5E-104 779.2 36.4 354 76-462 2-358 (363)
10 3o8j_A 2-methylcitrate synthas 100.0 6E-100 2E-104 789.2 33.6 365 63-462 18-392 (404)
11 1o7x_A Citrate synthase; lyase 100.0 1.5E-98 5E-103 775.3 35.2 352 77-462 6-366 (377)
12 1iom_A Citrate synthase; open 100.0 5E-98 2E-102 771.5 38.1 355 77-462 5-365 (377)
13 1vgm_A 378AA long hypothetical 100.0 1.9E-98 7E-103 774.8 34.9 352 77-462 7-367 (378)
14 1aj8_A Citrate synthase; hyper 100.0 3.2E-98 1E-102 771.4 36.2 353 77-462 3-359 (371)
15 1a59_A Citrate synthase; cold- 100.0 4.4E-98 1E-102 772.9 36.3 359 75-462 5-372 (378)
16 2ifc_A Citrate synthase; oxalo 100.0 3.2E-98 1E-102 774.8 34.4 355 75-462 7-373 (385)
17 1vgp_A 373AA long hypothetical 100.0 7.1E-98 2E-102 769.8 34.6 352 75-462 3-362 (373)
18 3tqg_A 2-methylcitrate synthas 46.7 51 0.0017 33.5 8.1 61 121-183 153-217 (375)
19 3o8j_A 2-methylcitrate synthas 37.0 98 0.0034 31.7 8.5 61 121-183 182-246 (404)
20 1a59_A Citrate synthase; cold- 36.1 1E+02 0.0035 31.2 8.4 59 122-182 154-216 (378)
21 1aj8_A Citrate synthase; hyper 36.0 92 0.0031 31.5 8.1 60 122-183 151-214 (371)
22 3hwk_A Methylcitrate synthase; 35.8 66 0.0022 33.2 7.0 60 122-183 196-259 (414)
23 2ifc_A Citrate synthase; oxalo 35.7 1.1E+02 0.0036 31.2 8.5 60 122-183 156-219 (385)
24 4ay7_A Methylcobalamin\: coenz 35.6 35 0.0012 33.6 4.8 44 330-373 302-346 (348)
25 1iom_A Citrate synthase; open 35.5 94 0.0032 31.5 8.1 60 122-183 152-215 (377)
26 2ibp_A Citrate synthase; disul 33.7 1.2E+02 0.004 31.1 8.5 60 122-183 182-245 (409)
27 1vgp_A 373AA long hypothetical 33.5 1.2E+02 0.004 30.7 8.4 60 122-183 148-211 (373)
28 1vgm_A 378AA long hypothetical 33.4 1.2E+02 0.0043 30.6 8.5 60 122-183 152-215 (378)
29 3u5c_P 40S ribosomal protein S 32.8 17 0.00058 32.1 1.7 22 98-129 15-36 (142)
30 3j20_T 30S ribosomal protein S 32.7 16 0.00055 31.8 1.5 22 98-129 6-27 (132)
31 2xzm_S RPS15E; ribosome, trans 27.4 22 0.00074 31.5 1.4 14 98-111 11-24 (144)
32 2c6x_A Citrate synthase 1; tri 25.9 1.5E+02 0.0051 29.8 7.6 60 122-183 145-208 (363)
33 2qsr_A Transcription-repair co 23.3 69 0.0024 28.8 4.1 50 127-184 29-82 (173)
34 3iz6_R 40S ribosomal protein S 21.5 20 0.00067 32.1 0.0 14 98-111 24-37 (154)
35 2eja_A URO-D, UPD, uroporphyri 20.9 98 0.0034 30.1 5.0 44 330-373 287-335 (338)
36 1o7x_A Citrate synthase; lyase 20.4 2.4E+02 0.0082 28.4 7.8 60 122-183 151-214 (377)
No 1
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=1.5e-121 Score=960.89 Aligned_cols=432 Identities=61% Similarity=1.086 Sum_probs=415.0
Q ss_pred hhHHHHHHhHCHHHHHHHHHHHHhhCCCcccceeecccccccccccccccccceecCCCCeeecCCCHHHHhhhCCCCCC
Q 012107 38 LDLHSQLKEMIPEQQERLKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRFRGLSIPECQKLLPAAKP 117 (471)
Q Consensus 38 ~~l~~~~~~~ip~~~~~~~~l~~~~g~~~~g~~t~~~~~~Glrgv~~~~t~iS~lD~~~Gi~yRGy~I~eL~~~~p~~~~ 117 (471)
++||++++++||.+++.+|+||++||++++|++|+||+++||+|+++++|+||+||+++||+||||+|+||++++|++++
T Consensus 2 ~~lk~~~~~~i~~~~~~~~~~~~~~g~~~~~~~t~~~~~~Gl~g~~~~~t~Is~id~~~Gl~YRGy~I~dLa~~~~~~~~ 81 (435)
T 1csh_A 2 TNLKDVLASLIPKEQARIKTFRQQHGNTAVGQITVDMSYGGMRGMKGLIYETSVLDPDEGIRFRGFSIPECQKLLPKAGG 81 (435)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHTTTTTCCCCCCCSEEEETTTEEEETTEEHHHHHHHSCBCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccCcCCCeeeeeeeeEEcCCCCeeECCccHHHHHhhCccccc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccC
Q 012107 118 DGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIH 197 (471)
Q Consensus 118 ~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~ 197 (471)
+.+++||||+||||+|+|||++|+++|+++|.+++.+|++|.++|+++|+++|||++|+++|++|+++++|+++|+++.+
T Consensus 82 ~~~~~feev~yLLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~v~aL~~~~~f~~~~~~~~~ 161 (435)
T 1csh_A 82 GEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIN 161 (435)
T ss_dssp CCSBCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCC
T ss_pred CCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCccCChHHHHHHHHHHHhhcccccccccccCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCC-cccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhccCCCCCC
Q 012107 198 KSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDG-KIIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNV 276 (471)
Q Consensus 198 k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~-~~~~p~~~l~~~~n~~~ml~~~~~~~~~~l~~~LvL~aDHeg~n~ 276 (471)
+.+||++.++++++|||++|+|+|++||++++++ .+++|++++||++||++||+++++.++++||++|||||||||+|+
T Consensus 162 ~~~~~~~~~~~a~~LiAk~p~iaa~~yr~~~~~~~~~i~p~~~ls~a~nfl~ml~~p~~~~~~~ld~~LiLhADHeg~N~ 241 (435)
T 1csh_A 162 RTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDPQFTELMRLYLTIHSDHEGGNV 241 (435)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCCTTSCHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCCSCSH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHHHccCCCCCch
Confidence 6778999999999999999999999999998765 578999999999999999999999999999999999999966999
Q ss_pred chhHHHHhhccCCChHHHHHHHHhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCC
Q 012107 277 SAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVL 356 (471)
Q Consensus 277 St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vy 356 (471)
||||+|+++||++|+|+|++|||++|+||+||||||+|++||.++.++||++.+++++++||++.+++|++|||||||||
T Consensus 242 STftaRvvaSt~ad~ysavaagi~aL~GplHGGAne~v~~ml~~i~~~ig~~~~~~~~~~~v~~~l~~g~~i~GfGHrVy 321 (435)
T 1csh_A 242 SAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVL 321 (435)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTCCCTTBCCSSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhccCCcccChHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCceecCCcccc
Confidence 99999999999999999999999999999999999999999999988888766789999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhhCCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhh
Q 012107 357 RKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSL 436 (471)
Q Consensus 357 k~~DPRa~~l~~~a~~~~~~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~ 436 (471)
|+.|||+++|+++++++.+++|+++++.+||+++++++.++++.|++|||||||+|+++++||||+.++||+||++||++
T Consensus 322 k~~DPRa~~L~~~a~~l~~~~~~~~~a~~le~~a~~~l~~~~~~k~l~pNVDf~sg~i~~~lGipp~~~ft~lFaisR~~ 401 (435)
T 1csh_A 322 RKTDPRYTCQREFALKHLPSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRAL 401 (435)
T ss_dssp CSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHcCCChhhcccchhhhhhhH
Confidence 99999999999999999888999999999999999988888999999999999999999999995459999999999999
Q ss_pred hHHHHHHHHHHcCCCccCCCccchhHHHHHhhh
Q 012107 437 GICSQLIWDRALGLPLERPKSVTLDWIEKNCKK 469 (471)
Q Consensus 437 GwlAH~ieq~~~~~pI~RP~s~~~~~~~~~~~~ 469 (471)
||+||++||+.++.||+||+|+|+++++++|+.
T Consensus 402 Gw~AH~~Eq~~~~~~I~RP~~~y~~~~~~~~~~ 434 (435)
T 1csh_A 402 GVLAQLIWSRALGFPLERPKSMSTAGLEKLSAG 434 (435)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCcCcHHHhhHHHHHHhcC
Confidence 999999999999988999999999999999863
No 2
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.3e-102 Score=810.72 Aligned_cols=373 Identities=21% Similarity=0.292 Sum_probs=329.8
Q ss_pred HHHHHHHhhCCCcccceeecc---cccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 012107 54 RLKKVKSELGKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (471)
Q Consensus 54 ~~~~l~~~~g~~~~g~~t~~~---~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (471)
.++..|++||.+++++.|+|+ +.+||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~d~~~~~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~I~dLa~~~---------~fEevayL 95 (414)
T 3hwk_A 25 PLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARC---------SFEQVAFL 95 (414)
T ss_dssp -----------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHH
T ss_pred eHHHHHHhhCCcccCCccccCCCCCCCCCCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHH
Confidence 467889999999999999999 88999999999999999999999 699999999999986 59999999
Q ss_pred HHhCCCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHH
Q 012107 130 LLTGKVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDS 209 (471)
Q Consensus 130 Ll~G~lPt~~ql~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~a 209 (471)
||+|+|||++|+++|+++|.+++.||+++.++|++||+++|||++|+++|++|+++++.. .+ |+..++++
T Consensus 96 Ll~G~LPt~~el~~f~~~l~~~~~lp~~v~~~i~~~p~~~hPM~~l~~~vsaL~~~~~~~---------~~-~~~~~~~a 165 (414)
T 3hwk_A 96 LWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE---------DD-AAANRAKA 165 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTT---------TC-GGGHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCCcc---------cC-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998764321 12 89999999
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhcc
Q 012107 210 LNLIARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASA 287 (471)
Q Consensus 210 l~LiA~~p~i~a~iyr~~~~~~~~~~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt 287 (471)
++|||++|+|+|++||++.+ ..+++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||
T Consensus 166 ~rLiAk~pti~a~~yr~~~g-~~~~~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~NaST~taRvvaSt 243 (414)
T 3hwk_A 166 MRMMAVLPTIVAIDMRRRRG-LPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHG-FNASTFAARVVTST 243 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhc
Confidence 99999999999999998754 3588999999999999999976 78899999999999999999 89999999999999
Q ss_pred CCChHHHHHHHHhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHH
Q 012107 288 LSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQR 367 (471)
Q Consensus 288 ~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~ 367 (471)
++|+|+|++|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+
T Consensus 244 ~ad~ysavaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~L~ 316 (414)
T 3hwk_A 244 QSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEI----G---DPANAREWLRAKLARKEKIMGFGHRVYRHGDSRVPTMK 316 (414)
T ss_dssp TCCHHHHHHHHHHHHTSTTTTHHHHHHHHHHHHH----C---SGGGHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCccCChHHHHHHHHHHh----C---CchHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHH
Confidence 9999999999999999999999999999999887 5 56899999999999999999999999999999999999
Q ss_pred HHHHhh---CCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHH
Q 012107 368 EFALKH---LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIW 444 (471)
Q Consensus 368 ~~a~~~---~~~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ie 444 (471)
++++++ .+++++++++.+||+++.+ .|+++||||||+|+++++||||. ++||+||++||++||+||++|
T Consensus 317 ~~a~~l~~~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~E 388 (414)
T 3hwk_A 317 RALERVGTVRDGQRWLDIYQVLAAEMAS-------ATGILPNLDFPTGPAYYLMGFDI-ASFTPIFVMSRITGWTAHIME 388 (414)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HHCCCBCTHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH-------hcCCCCchHHHHHHHHHHhCCCH-HHHHHHHHHHhHHHHHHHHHH
Confidence 999864 5678999999999999864 27999999999999999999995 999999999999999999999
Q ss_pred HHHcCCCccCCCccchhHH
Q 012107 445 DRALGLPLERPKSVTLDWI 463 (471)
Q Consensus 445 q~~~~~pI~RP~s~~~~~~ 463 (471)
|+..+ +|+||+++|+|.-
T Consensus 389 q~~~~-riiRPr~~Y~G~~ 406 (414)
T 3hwk_A 389 QATAN-ALIRPLSAYCGHE 406 (414)
T ss_dssp HHHSC-CCCCCEEEECSCC
T ss_pred HHhcC-CCcCCCceeeCCC
Confidence 99877 7999999999853
No 3
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=1.4e-101 Score=805.74 Aligned_cols=362 Identities=28% Similarity=0.419 Sum_probs=329.5
Q ss_pred ccceeecccccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 012107 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (471)
Q Consensus 67 ~g~~t~~~~~~Glrgv~~~~t~iS~lD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~ 145 (471)
.|.+|+|+ ||.|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+
T Consensus 46 ~G~~t~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 113 (427)
T 3msu_A 46 HGIFTYDP---GFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQKS---------NYRTLCYALIYGELPTDEQVKSFR 113 (427)
T ss_dssp GTEEEECT---TCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCCEeeCC---CcCCceEEEEEeeEEeCCCCEEEECCeEHHHHhccC---------CHHHHHHHHHcCcCCCHHHHHHHH
Confidence 47999997 999999999999999999995 99999999999985 599999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHH
Q 012107 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ 225 (471)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr 225 (471)
++|.+++.||+++.+++++||+++|||++|+++|++|++++ .+ ...|+..++++++||||+|+|+|++||
T Consensus 114 ~~l~~~~~lp~~~~~~i~~~p~~~hPM~~L~~~v~aL~~~~-------~~---~~~~~~~~~~a~rLiAk~pti~a~~yr 183 (427)
T 3msu_A 114 QEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEH-------IH---NGQKESQDEVAKNIVAKIATIAAMAYR 183 (427)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHH-------HH---TTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhc-------cC---CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997642 22 234899999999999999999999999
Q ss_pred HHhcCCcccCCCCCCCHHHHHHhhhcC------CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHH
Q 012107 226 RIYKDGKIIPKDDSLDYGGNFSHMLGF------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAAL 299 (471)
Q Consensus 226 ~~~~~~~~~~p~~~l~~~~n~~~ml~~------~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl 299 (471)
++.|. ++++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|++|||++|+|+|++|||
T Consensus 184 ~~~G~-~~~~p~~~ls~a~NfL~ml~~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysavaAgi 261 (427)
T 3msu_A 184 HNHGK-KFLEPKMEYGYAENFLYMMFADDESYKPDELHIKAMDTIFMLHADHE-QNASTSTVRLSGSTGNSPYAAIIAGI 261 (427)
T ss_dssp HHTTC-CCCCCCTTSCHHHHHHHHHHCSSTTCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHcCC-CCCCCCCccCHHHHHHHHHhcccccCCCCHHHHHHHHHHHhhccCCC-CChhHHHHHHHHccCCCHHHHHHHHH
Confidence 87654 478999999999999999965 48889999999999999999 99999999999999999999999999
Q ss_pred hcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCchHHHHHHHHHhh----
Q 012107 300 NGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKH---- 373 (471)
Q Consensus 300 ~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~--~IpGfGH~vyk~~DPRa~~l~~~a~~~---- 373 (471)
++|+||+||||||+|++||++| + +++++++||++.+++|+ +||||||||||+.|||+++|+++|+++
T Consensus 262 ~aL~GPlHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~~i~GFGHrVYk~~DPRa~~Lk~~a~~l~~~~ 334 (427)
T 3msu_A 262 TALWGPAHGGANEAVLKMLSEI----G---STENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAMKKNCEEILAKL 334 (427)
T ss_dssp HHHTSHHHHCHHHHHHHHHHHH----C---STTHHHHHHHHHHTC-----CCSBCCSSSSSCCHHHHHHHHHTHHHHHHG
T ss_pred HHccCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHh
Confidence 9999999999999999999887 5 46799999999999999 999999999999999999999999875
Q ss_pred -CCCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcC-CC
Q 012107 374 -LPDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALG-LP 451 (471)
Q Consensus 374 -~~~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~-~p 451 (471)
.+++|+++++.+||+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+.++ .+
T Consensus 335 g~~~~~~~~la~~le~~a~~--d~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~AH~~Eq~~~p~~r 411 (427)
T 3msu_A 335 GHSDNPLLTVAKKLEEIALQ--DEFFIERKLFSNVDFYSGIILKAMGIPE-DMFTAIFALARTSGWISQWIEMVNDPAQK 411 (427)
T ss_dssp GGCSSHHHHHHHHHHHHHC--------CCCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHHhh--cccccccCCCCChHHHHHHHHHHcCCCc-cccceehhHHhHHHHHHHHHHHHhCCCCc
Confidence 2379999999999999976 6788899999999999999999999995 99999999999999999999999873 57
Q ss_pred ccCCCccchhH
Q 012107 452 LERPKSVTLDW 462 (471)
Q Consensus 452 I~RP~s~~~~~ 462 (471)
|+||+|+|+|.
T Consensus 412 I~RPr~~Y~G~ 422 (427)
T 3msu_A 412 IGRPRQLYTGA 422 (427)
T ss_dssp CCCCEEEECSC
T ss_pred eeCCCceecCC
Confidence 99999999985
No 4
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=2.9e-101 Score=807.15 Aligned_cols=373 Identities=27% Similarity=0.425 Sum_probs=338.7
Q ss_pred HHHHHHhhCCCcccceeecccccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhC
Q 012107 55 LKKVKSELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTG 133 (471)
Q Consensus 55 ~~~l~~~~g~~~~g~~t~~~~~~Glrgv~~~~t~iS~lD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G 133 (471)
+++|+++.| .+|+| +||+|+.+++|+||+||+++|+ +||||+|+||++++ +||||+||||+|
T Consensus 38 ~~~l~~~~g-----~~t~~---~Gl~g~~~~~S~Is~idg~~G~L~YRGy~I~dLa~~~---------~feEvayLLl~G 100 (436)
T 2h12_A 38 IRKLPAQLG-----VFTFD---PGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENA---------SYEEVIYLLLNG 100 (436)
T ss_dssp CTTHHHHHS-----CEEEC---TTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHS
T ss_pred ehhhcccCC-----cEeeC---CccCCCeeeeeeceEEeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcC
Confidence 556766644 88998 6999999999999999999995 99999999999996 499999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHH
Q 012107 134 KVPSKEQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLI 213 (471)
Q Consensus 134 ~lPt~~ql~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~Li 213 (471)
+|||++|+++|+++|.+++.+|+++.++++++|+++|||++|+++|++|++++ ++..... .++..++++++||
T Consensus 101 ~LPt~~el~~f~~~l~~~~~lp~~v~~~~~~~p~~~hPM~~l~~~v~aL~~~~------~~~~~~~-~~~~~~~~a~rLi 173 (436)
T 2h12_A 101 ELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFY------PDANDIA-IPANRDLAAMRLI 173 (436)
T ss_dssp SCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGC------C---------CCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC------cccccCC-CHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999753 2222222 3478899999999
Q ss_pred hhhhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhc
Q 012107 214 ARVPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVAS 286 (471)
Q Consensus 214 A~~p~i~a~iyr~~~~~~~~~~p~~~l~~~~n~~~ml~~-------~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaS 286 (471)
|++|+|+|++||+..++ .+++|++++||++||++|+.+ +++..+++||++|||||||| +|+||||+|++||
T Consensus 174 Ak~ptiaa~~yr~~~g~-~~~~p~~~ls~a~nfl~ml~g~~~~~~~~~~~~~~~ld~~LiLhADHe-~NaSTftaRvvaS 251 (436)
T 2h12_A 174 AKIPTIAAWAYKYTQGE-AFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHE-QNASTSTVRLAGS 251 (436)
T ss_dssp HHHHHHHHHHHHHHHTC-CCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCCCCCCHHHHHHHHhcCCCCccCCCCHHHHHHHHhhheeecCCC-CchHHHHHHHHHh
Confidence 99999999999987765 478999999999999999964 68899999999999999998 8999999999999
Q ss_pred cCCChHHHHHHHHhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCC--CcccccCCCCCCCCCchHH
Q 012107 287 ALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSG--KVVPGFGHGVLRKTDPRYT 364 (471)
Q Consensus 287 t~sd~y~avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g--~~IpGfGH~vyk~~DPRa~ 364 (471)
|++|+|+|++|||++|+||+||||||+|++||.+| | +++++++||++.++++ ++||||||||||+.|||++
T Consensus 252 t~ad~ysaiaAgi~aL~GPlHGGAne~v~~ml~ei----~---~~~~v~~~i~~~l~~~~g~~imGFGHrVYk~~DPRa~ 324 (436)
T 2h12_A 252 TGANPFACIAAGIAALWGPAHGGANEAVLKMLARI----G---KKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAK 324 (436)
T ss_dssp TTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHH----C---SGGGHHHHHHHHHCTTSCCCCTTBCCSSCSSCCHHHH
T ss_pred cCccHHHHHHHHHHhcCCCccCCHHHHHHHHHHHh----c---CchHHHHHHHHHHhccCCCcccCCCccccCCCCCcHH
Confidence 99999999999999999999999999999999987 5 5789999999999955 9999999999999999999
Q ss_pred HHHHHHHhh---CC--CChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHH
Q 012107 365 CQREFALKH---LP--DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGIC 439 (471)
Q Consensus 365 ~l~~~a~~~---~~--~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~Gwl 439 (471)
+|+++|+++ .+ ++|+++++.+||+++.+ .++++.|++|||||||+|+++++||||. ++||+||++||++||+
T Consensus 325 iLk~~a~~l~~~~g~~~~~~~~la~~lE~~al~--~~~~~~k~l~pNVDfysg~i~~~lGiP~-~~ft~lFaisR~~GW~ 401 (436)
T 2h12_A 325 IMQQTCHEVLTELGIKDDPLLDLAVELEKIALS--DDYFVQRKLYPNVDFYSGIILKAMGIPT-SMFTVLFAVARTTGWV 401 (436)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--SHHHHHTTCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh--hhhccccCCCcChHHHHHHHHHHhCCCh-hhhhhhhhhhccccHH
Confidence 999999987 34 78999999999999844 4466789999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHcC-CCccCCCccchhHH
Q 012107 440 SQLIWDRALG-LPLERPKSVTLDWI 463 (471)
Q Consensus 440 AH~ieq~~~~-~pI~RP~s~~~~~~ 463 (471)
||++||+.++ .+|+||+++|+|.-
T Consensus 402 AH~~Eq~~~~~~kI~RPr~~Y~G~~ 426 (436)
T 2h12_A 402 SQWKEMIEEPGQRISRPRQLYIGAP 426 (436)
T ss_dssp HHHHHHHHSTTCCCCCCEEEECSCC
T ss_pred HHHHHHHhCCCCceecccccccCCC
Confidence 9999999987 57999999999863
No 5
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=100.00 E-value=2.2e-101 Score=802.91 Aligned_cols=376 Identities=28% Similarity=0.404 Sum_probs=353.8
Q ss_pred hhCCCcccceeecccccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHH
Q 012107 61 ELGKAQLGNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKE 139 (471)
Q Consensus 61 ~~g~~~~g~~t~~~~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ 139 (471)
+||.++++.+|++ +.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++
T Consensus 9 ~~~~~~~~~~~~~-~~~Gl~gv~~~~t~Is~idg~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~ 78 (409)
T 2ibp_A 9 KTTGKILQSPCGP-IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS---------TYEEVSYLILYGRLPTKR 78 (409)
T ss_dssp EESSCEECCTTSC-EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHH
T ss_pred CCCCcccCcCCCC-CCCCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHH
Confidence 7899999999998 77999999999999999999999 699999999999996 599999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhH----HHhhhccCCCCCCcchHHHHHHHHhh
Q 012107 140 QVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQ----EAYEKGIHKSKYWEPTYEDSLNLIAR 215 (471)
Q Consensus 140 ql~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~----~~y~~~~~k~~~~e~~~e~al~LiA~ 215 (471)
|+++|+++|.+++.+|+++.++++.+|++ |||++|+++|++|+++++++ ++|..|.+|.++|+..++++++|||+
T Consensus 79 el~~f~~~l~~~~~lp~~~~~~~~~~p~~-hPM~~l~~~v~aL~~~~~~~~~~~~~~~~g~~k~~~~~~~~~~a~~Lia~ 157 (409)
T 2ibp_A 79 ELEDYINRMKKYRELHPATVEVIRNLAKA-HPMFALEAAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRIAEKLVAK 157 (409)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHhCCcc-CchHHHHHHHHHHhccCccccchhhhhhcccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999987765 56888888888899999999999999
Q ss_pred hhHHHHHHHHHHhcCCcccCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHH
Q 012107 216 VPVVAAYVYQRIYKDGKIIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYL 293 (471)
Q Consensus 216 ~p~i~a~iyr~~~~~~~~~~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~ 293 (471)
+|+|+|++||+.+++ ++++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+
T Consensus 158 ~p~i~a~~y~~~~g~-~~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg-~naST~aaRv~aSt~ad~~s 235 (409)
T 2ibp_A 158 MPTIVAYHYRFSRGL-EVVRPRDDLGHAANFLYMMFGREPDPLASRGIDLYLILHADHE-VPASTFAAHVVASTLSDLYS 235 (409)
T ss_dssp HHHHHHHHHHHHTTC-CCCCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHcCC-CcccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHhhcCCcHHH
Confidence 999999999998754 478899999999999999976 78999999999999999998 89999999999999999999
Q ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhC-CCcccccCCCCCCCCCchHHHHHHHHHh
Q 012107 294 SFAAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNS-GKVVPGFGHGVLRKTDPRYTCQREFALK 372 (471)
Q Consensus 294 avaAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~-g~~IpGfGH~vyk~~DPRa~~l~~~a~~ 372 (471)
|++|||++|+||+||||||+|++||.++ + +++++++||++.+++ |++||||||||||+.|||+++|++++++
T Consensus 236 avaagi~aL~GplHGGAne~v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~ 308 (409)
T 2ibp_A 236 SVAAAIAALKGPLHGGANEMAVRNYLEI----G---TPAKAKEIVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRD 308 (409)
T ss_dssp HHHHHHHHHTSTTTSCHHHHHHHHHHHH----C---CGGGHHHHHHHHTSTTCCCCTTBCCSSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCccCCchHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcCcCCCccccCCCCCchHHHHHHHHH
Confidence 9999999999999999999999999887 5 578999999999999 9999999999999999999999999998
Q ss_pred hC---CCC-hHHHHHHHHHHhh--hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHH
Q 012107 373 HL---PDD-PLFQLVSKLFEVV--PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDR 446 (471)
Q Consensus 373 ~~---~~~-~~~~la~~le~~~--~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~ 446 (471)
+. +++ ++++++.+||+++ ++++ +.|+++||||||+|+++++||||. ++||+||++||++||+||++||+
T Consensus 309 l~~~~~~~g~~~~~a~~le~~~l~~~~~----~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~ 383 (409)
T 2ibp_A 309 YVAKFGDPQNLFAIASAIEQEVLSHPYF----QQRKLYPNVDFWSGIAFYYMGIPY-EYFTPIFAMSRVVGWVAHVLEYW 383 (409)
T ss_dssp HHHHHCCTTCHHHHHHHHHHHHHHCHHH----HHTTCCBCGGGTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhCCChHHHHHHHHHHHHHccchhh----hhcCCCCChHHHHHHHHHHhCCCH-HhhhhHHHHhccccHHHHHHHHH
Confidence 73 454 9999999999999 6655 348999999999999999999996 99999999999999999999999
Q ss_pred HcCCCccCCCccchhH
Q 012107 447 ALGLPLERPKSVTLDW 462 (471)
Q Consensus 447 ~~~~pI~RP~s~~~~~ 462 (471)
.++ +|+||+++|+|.
T Consensus 384 ~~~-~i~RP~~~Y~G~ 398 (409)
T 2ibp_A 384 ENN-RIFRPRACYIGP 398 (409)
T ss_dssp GGC-CCCCCEEEECSC
T ss_pred hcC-CccCchhhccCC
Confidence 988 699999999986
No 6
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri allostery, oxaloacetate, acetylcoa, NADH, allosteric enzyme transferase; 1.90A {Escherichia coli} SCOP: a.103.1.1 PDB: 3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A* 1owc_A 4e6y_A
Probab=100.00 E-value=5e-102 Score=809.56 Aligned_cols=365 Identities=26% Similarity=0.419 Sum_probs=336.3
Q ss_pred ccceeecccccccccccccccccceecCCCCe-eecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHH
Q 012107 67 LGNITVDMVIGGMRGMTGLLWETSLLDPDEGI-RFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLS 145 (471)
Q Consensus 67 ~g~~t~~~~~~Glrgv~~~~t~iS~lD~~~Gi-~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~ 145 (471)
.|.+|+|+ ||.|+.+++|+||+||+++|+ +||||+|+||+++. +||||+||||+|+|||++|+++|+
T Consensus 37 ~g~~~~d~---Gl~~~~~~~s~is~iDg~~G~L~YRGy~I~dLa~~~---------~feevayLLl~G~LPt~~el~~f~ 104 (426)
T 3l96_A 37 KGVFTFDP---GFTSTTSCESKITFIDGDEGILLHRGFPIDQLATDS---------NYLEVCYILLNGEKPTQEQYDEFK 104 (426)
T ss_dssp HTCCEECT---TSSSEEEEEESSEEEEGGGTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred CCcEEeCC---CCCCceEEeEEeEEEECCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHCCcCCCHHHHHHHH
Confidence 47999997 999999999999999999995 99999999999985 599999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHH
Q 012107 146 KELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQ 225 (471)
Q Consensus 146 ~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr 225 (471)
++|.+++.||+++.+++++||+++|||++|+++|++|+++ |+++.+. ..+++.++++++||||+|+|+|++||
T Consensus 105 ~~l~~~~~lp~~~~~~~~~~p~~~hPM~~l~~~vsaL~~~------~~~~~~~-~~~~~~~~~a~rLiAk~pti~a~~yr 177 (426)
T 3l96_A 105 TTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAF------YHDSLDV-NNPRHREIAAFRLLSKMPTMAAMCYK 177 (426)
T ss_dssp HHHHHTCSCCHHHHHHHTTSCTTSCHHHHHHHHHTTGGGT------CGGGCCT-TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhh------CcccccC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864 3333221 23678889999999999999999999
Q ss_pred HHhcCCcccCCCCCCCHHHHHHhhhcC-------CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHH
Q 012107 226 RIYKDGKIIPKDDSLDYGGNFSHMLGF-------DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAA 298 (471)
Q Consensus 226 ~~~~~~~~~~p~~~l~~~~n~~~ml~~-------~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAg 298 (471)
++.|. .+++|++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++||
T Consensus 178 ~~~G~-~~~~p~~~ls~a~nfl~ml~g~~~~~~~p~~~~~~~ld~~LiLhADHe-~N~ST~taRvvaSt~ad~ysaiaAg 255 (426)
T 3l96_A 178 YSIGQ-PFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHE-QNASTSTVRTAGSSGANPFACIAAG 255 (426)
T ss_dssp HHHTC-CCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCS-SCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHCCC-CCCCCCCCCCHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHhhcccCC-CCchHHHHHHHhccCCcHHHHHHHH
Confidence 88754 478999999999999999964 47889999999999999999 8999999999999999999999999
Q ss_pred HhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCC--cccccCCCCCCCCCchHHHHHHHHHhhC--
Q 012107 299 LNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGK--VVPGFGHGVLRKTDPRYTCQREFALKHL-- 374 (471)
Q Consensus 299 l~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~--~IpGfGH~vyk~~DPRa~~l~~~a~~~~-- 374 (471)
|++|+||+||||||+|++||+++ + +++++++||++.+++|+ +||||||||||+.|||+++|+++|++++
T Consensus 256 i~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~~~I~GfGHrVyk~~DPRa~~l~~~a~~l~~~ 328 (426)
T 3l96_A 256 IASLWGPAHGGANEAALKMLEEI----G---KKENIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKE 328 (426)
T ss_dssp HHHHHTTTTSSHHHHHHHHHHHC----C---SSSSTTTTSGGGCCSSCCTGGGTBCCSSCSSCCTTHHHHHHHHHHHHHH
T ss_pred HHhccCCccCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhCCCCcCcCCCCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999876 5 45789999999999999 9999999999999999999999998753
Q ss_pred -C-CChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCc
Q 012107 375 -P-DDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPL 452 (471)
Q Consensus 375 -~-~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI 452 (471)
+ ++++++++.+||+++.+ +++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+.||
T Consensus 329 ~g~~~~~~~~a~~le~~~~~--~~~~~~k~l~pNVDfysg~i~~~lGip~-~~ft~lFaisR~~Gw~AH~~Eq~~~~~~I 405 (426)
T 3l96_A 329 LGTKDDLLEVAMELENIALN--DPYFIEKKLYPNVDFYSGIILKAMGIPS-SMFTVIFAMARTVGWIAHWSEMHSDGMKI 405 (426)
T ss_dssp TCSCCSSTTHHHHHHHHHHH--CHHHHHHTCCBCHHHHHHHHHHHTTCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hCCCCHHHHHHHHHHHHHhh--cccccccCCCCchHHHHHHHHHHcCCCc-ccchhhhHHHHHHHHHHHHHHHHhcCCCc
Confidence 2 78999999999999976 4666779999999999999999999996 99999999999999999999999976789
Q ss_pred cCCCccchhH
Q 012107 453 ERPKSVTLDW 462 (471)
Q Consensus 453 ~RP~s~~~~~ 462 (471)
+||+|+|+|.
T Consensus 406 ~RPr~~Y~G~ 415 (426)
T 3l96_A 406 ARPRQLYTGY 415 (426)
T ss_dssp CCCEEEECSC
T ss_pred cCCcceecCC
Confidence 9999999985
No 7
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=7.7e-100 Score=782.52 Aligned_cols=351 Identities=26% Similarity=0.396 Sum_probs=325.3
Q ss_pred ccccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 012107 74 MVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (471)
Q Consensus 74 ~~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~ 152 (471)
++.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++
T Consensus 1 ~~~~Gl~g~~~~~T~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LLl~G~lPt~~el~~f~~~l~~~~ 71 (367)
T 2p2w_A 1 MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKS---------TFEETAYFLWYGKLPTKSELEEFKRKMADYR 71 (367)
T ss_dssp CCCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCcCCCCeeeeeeCeEEECCCCEEEECCeeHHHHHcCC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 355899999999999999999999 799999999999996 5999999999999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 012107 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (471)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~ 232 (471)
.+|+++.++|+.+|+++|||++|+++|++|+++ |++ |+..++++++|||++|+|+|++||++.++ +
T Consensus 72 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~-------~~~~~~~a~~lia~~p~i~a~~y~~~~g~-~ 137 (367)
T 2p2w_A 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSM------DGN-------DEDLREKAIRVASVFPTILAYYYRYSKGK-E 137 (367)
T ss_dssp CCCHHHHHHHTTSCSCCCHHHHHHHHHSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCccCCChHHHHHHHHHHHhcc------CCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C
Confidence 999999999999999999999999999999874 221 78899999999999999999999998754 4
Q ss_pred ccCCCCCCCHHHHHHhhhcCCchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchH
Q 012107 233 IIPKDDSLDYGGNFSHMLGFDDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (471)
Q Consensus 233 ~~~p~~~l~~~~n~~~ml~~~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e 312 (471)
+++|++++||++||++|+++..+..+++||++|||||||| +|+||||+||++||++|+|+|++|||++|+||+||||||
T Consensus 138 ~i~p~~~l~~a~nfl~ml~~~~~~~~~~ld~~LvL~ADHg-~NaSTftaRvvaSt~ad~ysavaagi~aL~GPlHGGAne 216 (367)
T 2p2w_A 138 LIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQD-INASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASE 216 (367)
T ss_dssp CCCCCTTSCHHHHHHHHHHSCCCTTHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHH
T ss_pred CCCCCCCCCHHHHHHHHhcCCChHHHHHHHHHHhHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHHccCCccCChHH
Confidence 7889999999999999998744888999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 012107 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (471)
Q Consensus 313 ~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~~~~~~~~la~~le~~~~~ 392 (471)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++.+++++++++.+||+++.+
T Consensus 217 ~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~ 289 (367)
T 2p2w_A 217 KVPPMLEEI----G---SEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVS 289 (367)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHcCCccccCCccccCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999887 5 568999999999999999999999999999999999999999986678999999999998643
Q ss_pred hHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 393 ~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
++ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||+++|+|.
T Consensus 290 ----~~-~k~l~pNVDf~sg~v~~~lGip~-~~~t~lFai~R~~Gw~AH~~Eq~~~~-~iiRP~~~Y~G~ 352 (367)
T 2p2w_A 290 ----NK-IKNIYPNVDLYSSVLFEELGFPR-NMFTALFATARVVGWTAHVIEYVSDN-KLIRPTSEYVGP 352 (367)
T ss_dssp ----TT-GGGCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCCCCCCSC
T ss_pred ----Hh-ccCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhccccHHHHHHHHHhcC-CccCccccccCC
Confidence 44 68999999999999999999996 99999999999999999999999887 699999999985
No 8
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=100.00 E-value=4.1e-100 Score=785.07 Aligned_cols=354 Identities=24% Similarity=0.376 Sum_probs=319.0
Q ss_pred cceeecccccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHH
Q 012107 68 GNITVDMVIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSK 146 (471)
Q Consensus 68 g~~t~~~~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~ 146 (471)
|-.|+| .||+|+.+++|+||+||+++| |+||||+|+||++++ +||||+||||+|+|||++|+++|++
T Consensus 3 ~~~~~~---~Gl~gv~~~~t~Is~idg~~g~L~YRGy~I~dLa~~~---------~feev~yLLl~G~lPt~~el~~f~~ 70 (375)
T 3tqg_A 3 AMTKTA---KGLRGQSAGETSIATVGKEGHGLTYRGYRIEDLAANA---------TFEEVAYLLLKNKLPTKSELDAYTK 70 (375)
T ss_dssp ----------------CCEESSEEECTTSCCEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred CCcccC---CccCCCeEeeeeceEEeCCCCEEEECCeeHHHHHhcC---------CHHHHHHHHHcCcCcCHHHHHHHHH
Confidence 345555 499999999999999999887 699999999999985 5999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHH
Q 012107 147 ELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQR 226 (471)
Q Consensus 147 ~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~ 226 (471)
+|.+++.||+++.++|++||+++|||++|+++|++|++++++. .|+..++++++||||+|+|+|++||+
T Consensus 71 ~l~~~~~lp~~~~~~~~~~p~~~hpM~~l~~~v~aL~~~~~~~-----------~~~~~~~~a~~LiAk~p~i~a~~yr~ 139 (375)
T 3tqg_A 71 KLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPEN-----------GFENEQNIADRLVAIFPAIQCYWYHY 139 (375)
T ss_dssp HHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC-----------SGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCCCC-----------ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754321 27889999999999999999999998
Q ss_pred HhcCCcccCCCCC-CCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhccc
Q 012107 227 IYKDGKIIPKDDS-LDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLA 303 (471)
Q Consensus 227 ~~~~~~~~~p~~~-l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~ 303 (471)
+.++ .++.|+++ +||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+
T Consensus 140 ~~g~-~~i~p~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe-~n~St~tarvvaSt~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 140 SHHG-KRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHE-FNASTFAARVCSATLSDIYSAVTAAIATLR 217 (375)
T ss_dssp HHHC-CCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred hcCC-CCcCCCCccccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCHHHHHHHHHHccCCCHHHHHHHHHHhcc
Confidence 7654 57888886 9999999999976 78999999999999999999 899999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhC---CCChHH
Q 012107 304 GPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLF 380 (471)
Q Consensus 304 GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~---~~~~~~ 380 (471)
||+||||||+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. ++++++
T Consensus 218 GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~~~~~~~i~GfGHrVyk~~DPRa~~l~~~a~~l~~~~~~~~~~ 290 (375)
T 3tqg_A 218 GPLHGGANEAAMDLIMLY----K---TPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLF 290 (375)
T ss_dssp SHHHHCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHTTTSTTTHHH
T ss_pred CcccCCHHHHHHHHHHHh----c---ChhHHHHHHHHHHhcCCCccCCCCCCCCCCCccHHHHHHHHHHHHHhcCCCHHH
Confidence 999999999999999875 5 578999999999999999999999999999999999999999973 568999
Q ss_pred HHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccch
Q 012107 381 QLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTL 460 (471)
Q Consensus 381 ~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~ 460 (471)
+++.+||+++.+ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||++.|+
T Consensus 291 ~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFa~sR~~Gw~AH~~Eq~~~~-~iiRP~~~Y~ 361 (375)
T 3tqg_A 291 DISDAIENTMQD-------EKKLFPNLDFYSATAYHFLNIPT-KLFTPIFVMSRVTGWCAHIFEQRKDN-RIIRPNADYI 361 (375)
T ss_dssp HHHHHHHHHHHH-------HHCCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEEC
T ss_pred HHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHHHHHHHhcC-CCCCCcceec
Confidence 999999999854 37999999999999999999996 99999999999999999999999988 6899999999
Q ss_pred hH
Q 012107 461 DW 462 (471)
Q Consensus 461 ~~ 462 (471)
|.
T Consensus 362 G~ 363 (375)
T 3tqg_A 362 GP 363 (375)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 9
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-99 Score=779.20 Aligned_cols=354 Identities=23% Similarity=0.341 Sum_probs=333.0
Q ss_pred ccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCC
Q 012107 76 IGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATV 154 (471)
Q Consensus 76 ~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~l 154 (471)
.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+
T Consensus 2 ~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~l 72 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNH---------SFEEAAYLILFGKLPSTEELQVFKDKLAAERNL 72 (363)
T ss_dssp CGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHS---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSC
T ss_pred CCcCCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCC
Confidence 4799999999999999999999 699999999999986 599999999999999999999999999999999
Q ss_pred cHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 012107 155 PDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (471)
Q Consensus 155 p~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~~ 234 (471)
|+++.++++.+|+++|||++|+++|++|++ + . . .|+..++++++|||++|+|+|++||++.++ +++
T Consensus 73 p~~~~~~~~~~p~~~hpM~~l~~~v~~l~~-~-~----------~-~~~~~~~~a~~Lia~~p~i~a~~~~~~~g~-~~i 138 (363)
T 2c6x_A 73 PEHIERLIQSLPNNMDDMSVLRTVVSALGE-N-T----------Y-TFHPKTEEAIRLIAITPSIIAYRKRWTRGE-QAI 138 (363)
T ss_dssp CHHHHHHHHHSCSSSCHHHHHHHHHHHHCC-S-S----------C-CSSCCHHHHHHHHHHHHHHHHHHHHHHTTC-CCC
T ss_pred CHHHHHHHHhCcccCCchHHHHHHHHhhcC-C-C----------C-ChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc
Confidence 999999999999999999999999999986 1 0 0 178899999999999999999999988754 478
Q ss_pred CCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchH
Q 012107 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (471)
Q Consensus 235 ~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e 312 (471)
+|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 139 ~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne 217 (363)
T 2c6x_A 139 APSSQYGHVENYYYMLTGEQPSEAKKKALETYMILATEHG-MNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPS 217 (363)
T ss_dssp CCCTTSCSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCCH
T ss_pred CCCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHhcCccHHHHHHHHHHHcccCccCCchH
Confidence 899999999999999976 78999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 012107 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (471)
Q Consensus 313 ~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~~~~~~~~la~~le~~~~~ 392 (471)
+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++++++++++++.+||+++.+
T Consensus 218 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~a~~le~~~~~ 290 (363)
T 2c6x_A 218 AVTKMLEDI----G---EKEHAEAYLKEKLEKGERLMGFGHRVYKTKDPRAEALRQKAEEVAGNDRDLDLALHVEAEAIR 290 (363)
T ss_dssp HHHHHHHTC----C---SSTTHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----C---ChhhHHHHHHHHHHcCCcccCCCCcccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999875 5 467899999999999999999999999999999999999999987789999999999999976
Q ss_pred hHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 393 ~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
...+|++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+.++ +|+||+++|+|.
T Consensus 291 ~~g~yf~~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 358 (363)
T 2c6x_A 291 LLEIYKPGRKLYTNVEFYAAAVMRAIDFDD-ELFTPTFSASRMVGWCAHVLEQAENN-MIFRPSAQYTGA 358 (363)
T ss_dssp HHHHHSCSSCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHTTTC-CCCCCEEEECSC
T ss_pred hhccccccCCCCcChHHHHHHHHHHhCCCh-hhhhhhhHHhccccHHHHHHHHHHcC-CccCCccccCCC
Confidence 333788899999999999999999999996 99999999999999999999999998 899999999985
No 10
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=100.00 E-value=6.1e-100 Score=789.24 Aligned_cols=365 Identities=24% Similarity=0.337 Sum_probs=317.9
Q ss_pred CCCcccceeecc---cccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCH
Q 012107 63 GKAQLGNITVDM---VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSK 138 (471)
Q Consensus 63 g~~~~g~~t~~~---~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~ 138 (471)
|.+++.+.|+++ +..||+|+.+++|+||+||+++| |+||||+|+||+++. +||||+||||+|+|||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~Gl~gv~~~~T~Is~idg~~g~L~YRGy~I~dLa~~~---------~fEevayLLl~G~LPt~ 88 (404)
T 3o8j_A 18 DTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHC---------EFEEVAHLLIHGKLPTR 88 (404)
T ss_dssp -----------------------CCCEESSEEECC-CCCEEETTEEHHHHHHHC---------CHHHHHHHHHTSSCCCH
T ss_pred CcchhhcCcccCCCCCCCCCCCceEeeeeceeeeCCCCEEEECCeEHHHHHhcC---------CHHHHHHHHHcCcCCCH
Confidence 445555666665 56899999999999999999888 699999999999985 59999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhH
Q 012107 139 EQVDGLSKELRDRATVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPV 218 (471)
Q Consensus 139 ~ql~~f~~~l~~~~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~ 218 (471)
+|+++|+++|.+++.||+++.+++++||+++|||++|+++|++|++++++. ++..++..++++++||||+|+
T Consensus 89 ~el~~f~~~l~~~~~lp~~~~~~~~~~p~~~hPM~~L~~~vsaL~~~~~~~--------~d~~~~~~~~~a~rLiAk~pt 160 (404)
T 3o8j_A 89 DELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEK--------EGHTVSGARDIADKLLASLSS 160 (404)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHHSCCC--------TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHhCCCCCChHHHHHHHHHHHHhcCccc--------ccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754332 122356788999999999999
Q ss_pred HHHHHHHHHhcCCcccC-CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHH
Q 012107 219 VAAYVYQRIYKDGKIIP-KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSF 295 (471)
Q Consensus 219 i~a~iyr~~~~~~~~~~-p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~av 295 (471)
|+|++||.+.++ +++. |++++||++||++||++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|+
T Consensus 161 i~a~~yr~~~g~-~~i~~~~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe-~N~St~taRvvaSt~ad~ysav 238 (404)
T 3o8j_A 161 ILLYWYHYSHNG-ERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHE-FNASTFTSRVIAGTGSDVYSAI 238 (404)
T ss_dssp HHHHHHHHHHHC-CCCCCCCCCSSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-SSHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCC-CChHHHHHHHHHhcCCCHHHHH
Confidence 999999987655 4554 56899999999999976 78899999999999999999 8999999999999999999999
Q ss_pred HHHHhcccccccccchHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhC-
Q 012107 296 AAALNGLAGPLHGLANQEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL- 374 (471)
Q Consensus 296 aAgl~aL~GplHGgA~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~- 374 (471)
+|||++|+||+||||||+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++|+++.
T Consensus 239 aagi~aL~GplHGGAne~v~~ml~~i----~---~~~~~~~~v~~~l~~~~~I~GFGHrVyk~~DPRa~~l~~~a~~l~~ 311 (404)
T 3o8j_A 239 IGAIGALRGPKHGGANEVSLEIQQRY----E---TPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSE 311 (404)
T ss_dssp HHHHHHHTSTTTTCHHHHHHHHHTTC----S---SHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcCCHHHHHHHHHHHh----c---CchhHHHHHHHHHhcCCcccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999765 5 578999999999999999999999999999999999999999874
Q ss_pred --CCChHHHHHHHHHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCc
Q 012107 375 --PDDPLFQLVSKLFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPL 452 (471)
Q Consensus 375 --~~~~~~~la~~le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI 452 (471)
+++++++++.+||+++.+ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|
T Consensus 312 ~~g~~~~~~~a~~le~~~~~-------~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-ri 382 (404)
T 3o8j_A 312 EGGSLKMYHIADRLETVMWE-------TKKMFPNLDWFSAVSYNMMGVPT-EMFTPLFVIARVTGWAAHIIEQRQDN-KI 382 (404)
T ss_dssp HHSCCHHHHHHHHHHHHHHH-------HHCCCBCTTTHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHSC-CC
T ss_pred hcCCcHHHHHHHHHHHHHHH-------hcCCCcChHHHHHHHHHHcCCCh-HhHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 468999999999999843 47999999999999999999995 99999999999999999999999988 68
Q ss_pred cCCCccchhH
Q 012107 453 ERPKSVTLDW 462 (471)
Q Consensus 453 ~RP~s~~~~~ 462 (471)
+||+++|+|.
T Consensus 383 iRPr~~Y~G~ 392 (404)
T 3o8j_A 383 IRPSANYTGP 392 (404)
T ss_dssp CCCCEEECSC
T ss_pred CCCcceecCC
Confidence 9999999986
No 11
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=1.5e-98 Score=775.32 Aligned_cols=352 Identities=27% Similarity=0.404 Sum_probs=330.0
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012107 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 6 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~feeva~LL~~G~lPt~~el~~f~~~l~~~~~lp 76 (377)
T 1o7x_A 6 KGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYG---------SYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVP 76 (377)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEECCccHHHHHcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccCCC
Confidence 699999999999999999999 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 012107 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~~~ 235 (471)
+++.++++.+|+++|||++|+++|++|+++ |++. + .|+..++++++|||++|+|+|++||++.++ ++++
T Consensus 77 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~--~--~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 145 (377)
T 1o7x_A 77 QEVLDTIYLMPKEADAIGLLEVGTAALASI------DKNF--K--WKENDKEKAISIIAKMATLVANVYRRKEGN-KPRI 145 (377)
T ss_dssp HHHHHHHHHSCTTSCHHHHHHHHHHHHHHH------CCCC--C--SSSSHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCcccCCcHHHHHHHHHHHhhc------CCCc--C--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCC
Confidence 999999999999999999999999999874 2222 1 389999999999999999999999988754 4788
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchHH
Q 012107 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (471)
Q Consensus 236 p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~ 313 (471)
|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 146 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~ad~~savaagi~aL~GplHGGAne~ 224 (377)
T 1o7x_A 146 PEPSDSFAKSFLLASFAREPTTDEINAMDKALILYTDHE-VPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEE 224 (377)
T ss_dssp CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CChHHHHHHHHHhcCCcHHHHHHHHHHhcCCCCCCChHHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCchHHHHHHHHHhhC---CC-ChHHHHHHHHHH
Q 012107 314 VLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PD-DPLFQLVSKLFE 388 (471)
Q Consensus 314 v~~~l~~i~~~ig~~~~~~~i~~~v~~~l-~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~---~~-~~~~~la~~le~ 388 (471)
|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. ++ +++++++.+||+
T Consensus 225 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~l~~~~~~~~~~~~~a~~le~ 297 (377)
T 1o7x_A 225 AFKQFIEI----G---DPNRVQNWFNDKVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADARRYFEIAQKLEE 297 (377)
T ss_dssp HHHHHHHH----C---SGGGHHHHHHHHTTTTCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----C---ChhHHHHHHHHHHHhcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999887 5 5789999999999 99999999999999999999999999999983 45 789999999999
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHc-CCCccCCCccchhH
Q 012107 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 462 (471)
Q Consensus 389 ~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 462 (471)
++.+++ +.||++||||||+|+++++||||. ++||++|++||++||+||++||+.+ + +|+||+++|+|.
T Consensus 298 ~~~~~~----~~k~l~pNVD~~sg~v~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 366 (377)
T 1o7x_A 298 LGIKQF----SSKGIYPNTDFYSGIVFYALGFPV-YMFTALFALSRTLGWLAHIIEYVEEQH-RLIRPRALYVGP 366 (377)
T ss_dssp HHHHHH----TTTTCCBCTTTTHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSC
T ss_pred HHHHHH----hhcCCCCChHHHHHHHHHHhCCCh-hhhhhHHHHhhhccHHHHHHHHHhccC-CccCCcccccCC
Confidence 997644 568999999999999999999996 9999999999999999999999999 6 899999999986
No 12
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=5e-98 Score=771.46 Aligned_cols=355 Identities=26% Similarity=0.391 Sum_probs=330.3
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012107 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|..++.+|
T Consensus 5 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~lp 75 (377)
T 1iom_A 5 RGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKS---------SFEETTFLLLHGRLPRRQELEEFSAALARRRALP 75 (377)
T ss_dssp GGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCC
T ss_pred cccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCCC
Confidence 799999999999999999999 699999999999996 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 012107 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~~~ 235 (471)
+++.++|+.+|+++|||++|+++|++|+++++ +. .+.+|+..++++++|||++|+|+|++||++.++ ++++
T Consensus 76 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 146 (377)
T 1iom_A 76 AHLLESFKRYPVSAHPMSFLRTAVSEFGMLDP-------TE-GDISREALYEKGLDLIAKFATIVAANKRLKEGK-EPIP 146 (377)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCT-------TT-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCCcCCCchhHHHHHHHHHhccCC-------Cc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCC
Confidence 99999999999999999999999999987532 11 133689999999999999999999999998754 4788
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchHH
Q 012107 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (471)
Q Consensus 236 p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~ 313 (471)
|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 147 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~ 225 (377)
T 1iom_A 147 PREDLSHAANFLYMANGVEPSPEQARLMDAALILHAEHG-FNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEA 225 (377)
T ss_dssp CCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHH
T ss_pred CCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHcccCccCChhHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhh---CCCChHHHHHHHHHHhh
Q 012107 314 VLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKH---LPDDPLFQLVSKLFEVV 390 (471)
Q Consensus 314 v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~---~~~~~~~~la~~le~~~ 390 (471)
|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ .+++++++++.+||+++
T Consensus 226 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~a~~le~~~ 298 (377)
T 1iom_A 226 VMRMIQEI----G---TPERAREWVREKLAKKERIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEEA 298 (377)
T ss_dssp HHHHHHHH----C---SHHHHHHHHHHHHHTTCCCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHh----c---CchhHHHHHHHHHHCCCcccCCCCcccCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999887 5 57899999999999999999999999999999999999999987 36789999999999998
Q ss_pred hhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 391 PPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 391 ~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
.+ +++ .|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+.+|+||+++|+|.
T Consensus 299 ~~---~~~-~k~l~pNVD~~sg~i~~~lG~p~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~~~i~RP~~~Y~G~ 365 (377)
T 1iom_A 299 GK---VLN-PRGIYPNVDFYSGVVYSDLGFSL-EFFTPIFAVARISGWVGHILEYQELDNRLLRPGAKYVGE 365 (377)
T ss_dssp HH---HHT-TTTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSC
T ss_pred HH---Hhc-cCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhhcCCcccccccccCC
Confidence 54 244 78999999999999999999996 999999999999999999999999334899999999985
No 13
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.9e-98 Score=774.77 Aligned_cols=352 Identities=23% Similarity=0.339 Sum_probs=329.4
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012107 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 7 ~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp 77 (378)
T 1vgm_A 7 RGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYA---------SYEELIHLMLYGELPNRQQLNQIKGIINESFEVP 77 (378)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CccCCCeeeeeeceEEECCCCeEEEcCeeHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHccCCC
Confidence 699999999999999999999 699999999999986 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcccC
Q 012107 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKIIP 235 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~~~ 235 (471)
+++.++++.+|+++|||++|+++|++|+++ |++.. + |+..++++++|||++|+|+|++||++.++ ++++
T Consensus 78 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i~ 146 (378)
T 1vgm_A 78 EQVISTIFSMPRNCDAIGMMETAFGILASI------YDPKW---N-RATNKELAVQIIAKTATITANIYRAKEGL-KPKI 146 (378)
T ss_dssp HHHHHHHTTSCTTSCHHHHHHHHHHHHHHH------HCCCC---C-TTTHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCC
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHhcc------CCccC---C-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCC
Confidence 999999999999999999999999999873 32221 2 89999999999999999999999988754 4788
Q ss_pred CCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchHH
Q 012107 236 KDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQE 313 (471)
Q Consensus 236 p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e~ 313 (471)
|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||+
T Consensus 147 p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aaRv~aSt~~d~~savaagi~aL~GplHGGAne~ 225 (378)
T 1vgm_A 147 PEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHE-VPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEE 225 (378)
T ss_dssp CCCCSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCChHHH
Confidence 99999999999999976 78999999999999999998 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCchHHHHHHHHHhhC---C-CChHHHHHHHHHH
Q 012107 314 VLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---P-DDPLFQLVSKLFE 388 (471)
Q Consensus 314 v~~~l~~i~~~ig~~~~~~~i~~~v~~~l-~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~---~-~~~~~~la~~le~ 388 (471)
|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++. + ++++++++.+||+
T Consensus 226 v~~ml~ei----~---~~~~~~~~v~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~le~ 298 (378)
T 1vgm_A 226 AFKQFVEI----G---SVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYEIAERIEK 298 (378)
T ss_dssp HHHHHHHH----C---SGGGHHHHHHHHTTTSCCCCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----C---CHhHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999887 5 5689999999999 99999999999999999999999999999873 4 5789999999999
Q ss_pred hhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHc-CCCccCCCccchhH
Q 012107 389 VVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 462 (471)
Q Consensus 389 ~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 462 (471)
++.+++ +.|+++||||||+|+++++||||. ++||++|++||++||+||++||+.+ + +|+||+++|+|.
T Consensus 299 ~~~~~~----~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 367 (378)
T 1vgm_A 299 LGVDTF----GSKHIYPNTDFYSGIVFYALGFPI-YMFTSLFALSRVLGWLAHIIEYVEEQH-RLIRPRALYIGP 367 (378)
T ss_dssp HHHHHH----GGGTCCBCTTTTHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHHSC-CCCCCEEEECSC
T ss_pred HHHHHH----hhCCCCCChHHHHHHHHHHhCCCH-HhhhHHHHHHhhccHHHHHHHHHhccC-CccCcccccCCC
Confidence 997644 568999999999999999999996 9999999999999999999999999 6 899999999986
No 14
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=3.2e-98 Score=771.43 Aligned_cols=353 Identities=26% Similarity=0.371 Sum_probs=330.5
Q ss_pred cccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCCCc
Q 012107 77 GGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRATVP 155 (471)
Q Consensus 77 ~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~lp 155 (471)
+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.+|
T Consensus 3 ~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~lp 73 (371)
T 1aj8_A 3 KGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRGLP 73 (371)
T ss_dssp GGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCC
T ss_pred CCcCCCeeeeeeCeEEECCCCEEEEcCccHHHHHccC---------CHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCCC
Confidence 799999999999999999999 699999999999996 5999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCC-CCcchHHHHHHHHhhhhHHHHHHHHHHhcCCccc
Q 012107 156 DYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSK-YWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKII 234 (471)
Q Consensus 156 ~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~-~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~~ 234 (471)
+++.++++.+|+++|||++|+++|++|+++++ +. .+. +|+..++++++|||++|+|+|++||++.++ +++
T Consensus 74 ~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~i 144 (371)
T 1aj8_A 74 KEVIEIMEALPKNTHPMGALRTIISYLGNIDD-------SG-DIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGL-EYV 144 (371)
T ss_dssp HHHHHHHHHSCTTCCHHHHHHHHHHHHHHHST-------TT-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHhccCC-------cc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCC
Confidence 99999999999999999999999999987421 22 222 689999999999999999999999998754 478
Q ss_pred CCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccchH
Q 012107 235 PKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLANQ 312 (471)
Q Consensus 235 ~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~e 312 (471)
+|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||||
T Consensus 145 ~p~~~ls~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAne 223 (371)
T 1aj8_A 145 PPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAEHE-INASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVE 223 (371)
T ss_dssp CCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHH
T ss_pred CCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCC-CChhHHHHHHHhhcCCcHHHHHHHHHHHcCCCccCCchH
Confidence 899999999999999976 78999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhCCCChHHHHHHHHHHhhhh
Q 012107 313 EVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHLPDDPLFQLVSKLFEVVPP 392 (471)
Q Consensus 313 ~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~~~~~~~~la~~le~~~~~ 392 (471)
+|++||.++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++ +++++++++.+||+++.
T Consensus 224 ~v~~~l~~i----~---~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~~~~~-~~~~~~~~a~~le~~~~- 294 (371)
T 1aj8_A 224 EAIKQFMEI----G---SPEKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKL-GDKKLFEIAERLERLVE- 294 (371)
T ss_dssp HHHHHHHHH----C---SGGGHHHHHHHHHHHTCCCTTBCCSSCSSCCHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHh----c---CchhHHHHHHHHHHcCCeeecCCccccCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHHHHH-
Confidence 999999887 5 56899999999999999999999999999999999999999998 67899999999999874
Q ss_pred hHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 393 ILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 393 ~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
++++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||+++|+|.
T Consensus 295 ---~~~~~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~i~R~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 359 (371)
T 1aj8_A 295 ---EYLSKKGISINVDYWSGLVFYGMKIPI-ELYTTIFAMGRIAGWTAHLAEYVSHN-RIIRPRLQYVGE 359 (371)
T ss_dssp ---HHTTTTTCCBCTTTTHHHHHHTTTCCG-GGHHHHHHHHHHHHHHHHHHHHHTTC-CCCCCEEEECSC
T ss_pred ---HhccCCCCCCChHHHHHHHHHHcCCCH-HhhhhHHHHhccccHHHHHHHHHhcC-CccCchhhccCC
Confidence 456779999999999999999999996 99999999999999999999999988 699999999985
No 15
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=4.4e-98 Score=772.93 Aligned_cols=359 Identities=25% Similarity=0.339 Sum_probs=330.1
Q ss_pred cccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012107 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~ 153 (471)
+.+||+|+++++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 5 ~~~Gl~gv~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~---------~fEeva~LLl~G~lP~~~el~~f~~~l~~~~~ 75 (378)
T 1a59_A 5 IHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERSHRK 75 (378)
T ss_dssp CCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCS
T ss_pred CCCccCCCeeeeeeceEEECCCCeEEEcCccHHHHHhcC---------CHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 44799999999999999999999 799999999999996 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 012107 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (471)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~ 233 (471)
+|+++.++++.+|+++|||++|+++|++|+++++ +. .+.+|+..++++++|||++|+|+|++||+.+++ ++
T Consensus 76 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~~-------~~-~~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 146 (378)
T 1a59_A 76 LDENVKGAIDLLSTACHPMDVARTAVSVLGANHA-------RA-QDSSPEANLEKAMSLLATFPSVVAYDQRRRRGE-EL 146 (378)
T ss_dssp CCHHHHHHHTTSCTTSCHHHHHHHHHHHHHHTCT-------TT-TCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCCcHHHHHHHHHHHHhcCC-------Cc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence 9999999999999999999999999999987532 11 133689999999999999999999999998754 47
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccch
Q 012107 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (471)
Q Consensus 234 ~~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~ 311 (471)
++|++++||++||++|+++ +++.++++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 147 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGAn 225 (378)
T 1a59_A 147 IEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHS-FNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGAN 225 (378)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCC-CCchHHHHHHHhhcCCcHHHHHHHHHHHccCCccCCch
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhC---CCChHHHHHHH
Q 012107 312 QEVLLWIKSVVDECGENVT---TEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDDPLFQLVSK 385 (471)
Q Consensus 312 e~v~~~l~~i~~~ig~~~~---~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~---~~~~~~~la~~ 385 (471)
|+|++||.++.+. |++.+ ++++++||++.+++|++||||||||||+.|||+++|+++++++. +++++++++.+
T Consensus 226 e~v~~~l~~i~~~-~~~~~~~~~~~~~~~v~~~l~~~~~i~GfGHrvyk~~DPRa~~l~~~a~~~~~~~~~~~~~~~a~~ 304 (378)
T 1a59_A 226 EAVMHTFEEIGIR-KDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMIKHYDRPEMLGLYNG 304 (378)
T ss_dssp HHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHTTCCCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCccccchHHHHHHHHHHHHhCCCeeeCCCCcccCCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999987432 22111 27899999999999999999999999999999999999999873 67899999999
Q ss_pred HHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 386 le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
||+++.+ .||++||||||+|+++++||||. ++||+||++||++||+||++||+..+ +|+||+++|+|.
T Consensus 305 le~~~~~-------~k~l~pNVD~~sg~i~~~lGip~-~~~t~lF~isR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 372 (378)
T 1a59_A 305 LEAAMEE-------AKQIKPNLDYPAGPTYNLMGFDT-EMFTPLFIAARITGWTAHIMEQVADN-ALIRPLSEYNGP 372 (378)
T ss_dssp HHHHHHH-------HHCCCBCTHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHHHTC-CCCCCCCCCCSC
T ss_pred HHHHHHH-------HhCCCCChHHHHHHHHHHhCCCh-hhcchhhhhhcchhHHHHHHHHHhcC-CCcCchhhccCC
Confidence 9999854 27999999999999999999995 99999999999999999999999988 699999999985
No 16
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=3.2e-98 Score=774.76 Aligned_cols=355 Identities=23% Similarity=0.346 Sum_probs=331.4
Q ss_pred cccccccccccccccceecCCCC-eeecCCCHHHHhh-hCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC
Q 012107 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQK-LLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA 152 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~-~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~ 152 (471)
+.+||+|+.+++|+||+||+++| ++||||+|+||++ +. +||||+||||+|+|||++|+++|+++|.+++
T Consensus 7 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~dLa~~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~ 77 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGA---------QDEEIQYLFLYGNLPTEQELRKYKETVQKGY 77 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHGGG
T ss_pred CCCCcCCCeeeeeeCeEEECCCCEEEECCccHHHHHhcCC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHcc
Confidence 44799999999999999999999 6999999999999 64 5999999999999999999999999999999
Q ss_pred CCcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCc
Q 012107 153 TVPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGK 232 (471)
Q Consensus 153 ~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~ 232 (471)
.+|+++.++++.+|+++|||++|+++|++|+++ |++. +++|+..++++++|||++|+|+|++||++.++ +
T Consensus 78 ~lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~------~~~~---~~~~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~ 147 (385)
T 2ifc_A 78 KIPDFVINAIRQLPRESDAVAMQMAAVAAMAAS------ETKF---KWNKDTDRDVAAEMIGRMSAITVNVYRHIMNM-P 147 (385)
T ss_dssp CCCHHHHHHHHTSCTTSCHHHHHHHHHHHHHHH------CTTC---CCCTTTHHHHHHHHHHHHHHHHHHHHHHHTTC-C
T ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHHHHHhc------CCcc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 999999999999999999999999999999874 2322 24799999999999999999999999988754 4
Q ss_pred ccCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccc
Q 012107 233 IIPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLA 310 (471)
Q Consensus 233 ~~~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA 310 (471)
+++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+||||
T Consensus 148 ~i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~St~aarv~aSt~~d~~savaagi~aL~GplHGGA 226 (385)
T 2ifc_A 148 AELPKPSDSYAESFLNAAFGRKATKEEIDAMNTALILYTDHE-VPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGA 226 (385)
T ss_dssp CCCCCCCSCHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCS-SCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSSH
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCC-ccHHHHHHHHHHhcCCcHHHHHHHHHHHccCCccCCh
Confidence 78899999999999999976 78999999999999999998 8999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-hCCCcccccCCCCCCCCCchHHHHHHHHHhh----CCCChHHHHHHH
Q 012107 311 NQEVLLWIKSVVDECGENVTTEQLKDYVWKTL-NSGKVVPGFGHGVLRKTDPRYTCQREFALKH----LPDDPLFQLVSK 385 (471)
Q Consensus 311 ~e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l-~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~----~~~~~~~~la~~ 385 (471)
||+|++||+++ + +++++++||++.+ ++|++||||||||||+.|||+++|+++++++ .+++++++++.+
T Consensus 227 ne~v~~ml~ei----~---~~~~~~~~i~~~l~~~~~~i~GfGHrvyk~~DPRa~~L~~~a~~l~~~~~~~~~~~~~a~~ 299 (385)
T 2ifc_A 227 AEAAIAQFDEI----K---DPAMVEKWFNDNIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKPEVHKVYEIATK 299 (385)
T ss_dssp HHHHHHHHHHH----C---SGGGHHHHHHHHTTTSSSCCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----C---CHHHHHHHHHHHHHhcCCcccCCCCcccCCCCCchHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 99999999887 5 5689999999999 9999999999999999999999999999998 346899999999
Q ss_pred HHHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCcc--ccchhhhhhhhhhhHHHHHHHHHHc-CCCccCCCccchhH
Q 012107 386 LFEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEA--RYYTVLFGVSRSLGICSQLIWDRAL-GLPLERPKSVTLDW 462 (471)
Q Consensus 386 le~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~--~~~t~lF~vsR~~GwlAH~ieq~~~-~~pI~RP~s~~~~~ 462 (471)
||+++.+++ +.|+++||||||+|+++++|||| . ++||++|++||++||+||++||+.+ + +|+||+++|+|.
T Consensus 300 le~~~~~~~----~~k~l~pNVD~~sg~v~~~lGip-~~~~~~t~lF~isR~~Gw~AH~~Eq~~~~~-~i~RP~~~Y~G~ 373 (385)
T 2ifc_A 300 LEDFGIKAF----GSKGIYPNTDYFSGIVYMSIGFP-LRNNIYTALFALSRVTGWQAHFIEYVEEQQ-RLIRPRAVYVGP 373 (385)
T ss_dssp HHHHHHHHH----GGGTCCBCTTTTHHHHHHHHTCC-SGGGHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCEEEECSC
T ss_pred HHHHHHHHH----hhcCCCCChHHHHHHHHHHcCCC-cchhhhhhHHHHhhcccHHHHHHHHHhccC-CccCcccccCCC
Confidence 999997644 46899999999999999999998 6 8999999999999999999999999 7 899999999986
No 17
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.1e-98 Score=769.78 Aligned_cols=352 Identities=27% Similarity=0.411 Sum_probs=328.3
Q ss_pred cccccccccccccccceecCCCC-eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC
Q 012107 75 VIGGMRGMTGLLWETSLLDPDEG-IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT 153 (471)
Q Consensus 75 ~~~Glrgv~~~~t~iS~lD~~~G-i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~ 153 (471)
+.+||+|+.+++|+||+||+++| ++||||+|+||++++ +||||+||||+|+|||++|+++|+++|.+++.
T Consensus 3 ~~~Gl~g~~~~~t~Is~id~~~G~L~YRGy~i~~La~~~---------~fEeva~LLl~G~lPt~~el~~f~~~l~~~~~ 73 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFS---------NFEEVSYLILYGKLPNREELNWFQEKLREERY 73 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHC---------CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCC
T ss_pred CCCccCCCeeeeeeCeEEECCCCEEEEcCeeHHHHHccC---------CHHHHHHHHHCCCCcCHHHHHHHHHHHHHccC
Confidence 34799999999999999999999 699999999999996 59999999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCCCCChHHHHHHHHHHhcccchhHHHhhhccCCCCCCcchHHHHHHHHhhhhHHHHHHHHHHhcCCcc
Q 012107 154 VPDYVYKAIDALPVTAHPMTQFASGVMALQVQSEFQEAYEKGIHKSKYWEPTYEDSLNLIARVPVVAAYVYQRIYKDGKI 233 (471)
Q Consensus 154 lp~~v~~~i~~lP~~~hPM~~l~~avsal~~~s~f~~~y~~~~~k~~~~e~~~e~al~LiA~~p~i~a~iyr~~~~~~~~ 233 (471)
+|+++.++|+.+|+++|||++|+++|++|++++ . . + |+..++++++|||++|+|+|++||+.+++ ++
T Consensus 74 lp~~~~~~~~~~p~~~hpM~~l~~~v~~l~~~~-------~-~---~-~~~~~~~a~~Lia~~p~i~a~~y~~~~g~-~~ 140 (373)
T 1vgp_A 74 LPDFIIKFLREVRKDAQPMDILRTAVSLLGIED-------S-K---N-DERTDIKGIKLISKFPTIVANYARLRKGL-DI 140 (373)
T ss_dssp CCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHC-------C-C---C-SSCHHHHHHHHHHHHHHHHHHHHHHHTTC-CC
T ss_pred CCHHHHHHHHhCCCCCChHHHHHHHHHHHhccC-------C-C---C-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 999999999999999999999999999998632 1 1 2 88999999999999999999999988754 47
Q ss_pred cCCCCCCCHHHHHHhhhcC--CchHHHHHHHHHHHHhccCCCCCCchhHHHHhhccCCChHHHHHHHHhcccccccccch
Q 012107 234 IPKDDSLDYGGNFSHMLGF--DDPKMLELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALNGLAGPLHGLAN 311 (471)
Q Consensus 234 ~~p~~~l~~~~n~~~ml~~--~~~~~~~~l~~~LvL~aDHeg~n~St~aarvvaSt~sd~y~avaAgl~aL~GplHGgA~ 311 (471)
++|++++||++||++|+++ +++..+++||++|||||||| +|+||||+|+++||++|+|+|++|||++|+||+|||||
T Consensus 141 i~p~~~ls~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg-~n~ST~aaRv~aSt~ad~~savaagi~aL~GplHGGAn 219 (373)
T 1vgp_A 141 IEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHE-MNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGAN 219 (373)
T ss_dssp CCCCTTSCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCS-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCC-CchHHHHHHHHHhcCccHHHHHHHHHHhcCCCCcCCHH
Confidence 8899999999999999976 78999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhCCCcccccCCCCCCCCCchHHHHHHHHHhhC---CCC--hHHHHHHHH
Q 012107 312 QEVLLWIKSVVDECGENVTTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDPRYTCQREFALKHL---PDD--PLFQLVSKL 386 (471)
Q Consensus 312 e~v~~~l~~i~~~ig~~~~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DPRa~~l~~~a~~~~---~~~--~~~~la~~l 386 (471)
|+|++||+++ + +++++++||++.+++|++||||||||||+.|||+++|+++++++. +++ ++++++.+|
T Consensus 220 e~v~~ml~~i----~---~~~~~~~~i~~~l~~~~~i~GfGHrvyk~~DPRa~~L~~~~~~l~~~~~~~~~~~~~~a~~l 292 (373)
T 1vgp_A 220 YEALKMFKEI----G---SPEKVNDYILNRLSNKQRIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKV 292 (373)
T ss_dssp CHHHHHHHHS----C---SSSSHHHHHHHHHHTTCCCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----c---CchhHHHHHHHHHHcCCcccCCCccccCCCCCchHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 9999999876 5 467899999999999999999999999999999999999999873 555 899999999
Q ss_pred HHhhhhhHHhcCCCCCCCCchhhHHHHHHhccCCCccccchhhhhhhhhhhHHHHHHHHHHcCCCccCCCccchhH
Q 012107 387 FEVVPPILTKLGKVKNPWPNVDAHSGVLLNHFGLAEARYYTVLFGVSRSLGICSQLIWDRALGLPLERPKSVTLDW 462 (471)
Q Consensus 387 e~~~~~~l~~~~k~k~l~pNVD~~sg~l~~~lGlp~~~~~t~lF~vsR~~GwlAH~ieq~~~~~pI~RP~s~~~~~ 462 (471)
|+++.+ +++.|+++||||||+|+++++||||. ++||++|++||++||+||++||+..+ +|+||+++|+|.
T Consensus 293 e~~~~~----~~~~k~l~pNVDf~sg~i~~~lGip~-~~~t~lFaisR~~Gw~AH~~Eq~~~~-~i~RP~~~Y~G~ 362 (373)
T 1vgp_A 293 EEIGIK----YLGPKGIYPNVDFFSSIVFYSLGFEP-DFFPAVFASARVVGWVAHIMEYIKDN-KIIRPKAYYKGE 362 (373)
T ss_dssp HHHHHH----HHGGGTCCBCHHHHHHHHHHHTTCCG-GGHHHHHHHHHHHHHHHHHHHHGGGC-CCCCCCCCCCSC
T ss_pred HHHHHH----hcccCCCCCChHHHHHHHHHHcCCCH-HhhhhhHHhhccccHHHHHHHHHhcC-CCcCccccccCC
Confidence 999743 44678999999999999999999996 99999999999999999999999988 699999999985
No 18
>3tqg_A 2-methylcitrate synthase; energy metabolism, transferase; 2.30A {Coxiella burnetii} SCOP: a.103.1.0
Probab=46.66 E-value=51 Score=33.48 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhCC--CcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRAT--VPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~~--lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
-++-+.+|++|+|+.|++.+.+.|..-|.-+.+ +.. ....++.+- .++|-..+++|+.+|.
T Consensus 153 ls~a~nfl~ml~g~~p~~~~~~~ld~~Lil~ADHe~n~St~tarvvaSt--~ad~ysavaagi~aL~ 217 (375)
T 3tqg_A 153 LTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSAT--LSDIYSAVTAAIATLR 217 (375)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcc--CCCHHHHHHHHHHhcc
Confidence 468899999999999999999999998765542 333 444555554 4789999999999984
No 19
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=37.02 E-value=98 Score=31.72 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 121 PLPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 121 ~~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
-++-+.||.+|+|+.|++++.+.|..-|.-+. .+.. ....++.+- .++|-..+++|+.+|.
T Consensus 182 ls~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~N~St~taRvvaSt--~ad~ysavaagi~aL~ 246 (404)
T 3o8j_A 182 DSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGT--GSDVYSAIIGAIGALR 246 (404)
T ss_dssp SSHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSSHHHHHHHHHHTT--TCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHhc--CCCHHHHHHHHHHHcc
Confidence 46779999999999999999999999886654 2333 444555554 4679999999999984
No 20
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=36.14 E-value=1e+02 Score=31.19 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHh
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMAL 182 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal 182 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+.. ....++.+ ..++|-..+.+|+++|
T Consensus 154 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL 216 (378)
T 1a59_A 154 DYSANFLWMTFGEEAAPEVVEAFNVSMILYAEHSFNASTFTARVITS--TLADLHSAVTGAIGAL 216 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHc
Confidence 4778999999999999999999998886654 2333 34444444 4588999999999999
No 21
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=36.05 E-value=92 Score=31.49 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=45.8
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+.. ....++.+ ..++|-..+.+|+.+|.
T Consensus 151 s~~~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 214 (371)
T 1aj8_A 151 SHAANFLYMLHGEEPPKEWEKAMDVALILYAEHEINASTLAVMTVGS--TLSDYYSAILAGIGALK 214 (371)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHhHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcC
Confidence 4778999999999999999999998876654 2333 34444444 45789999999999983
No 22
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=35.80 E-value=66 Score=33.15 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++.+|+|+.|++.+.+.|..-|.-+. .+.. ....++.+ ..++|-..+++|+.+|.
T Consensus 196 s~a~nfl~ml~g~~p~~~~~~~ld~~LiLhADHe~NaST~taRvvaS--t~ad~ysavaagi~aL~ 259 (414)
T 3hwk_A 196 GYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTS--TQSDIYSAVTGAIGALK 259 (414)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCCCCChHHHHHHHHHh--cCCCHHHHHHHHHHHhc
Confidence 5778999999999999999999999886554 2333 34455554 34679999999999984
No 23
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=35.72 E-value=1.1e+02 Score=31.16 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+++|+++|.
T Consensus 156 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 219 (385)
T 2ifc_A 156 SYAESFLNAAFGRKATKEEIDAMNTALILYTDHEVPASTTAGLVAVS--TLSDMYSGITAALAALK 219 (385)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHhHhcCCCccHHHHHHHHHHh--cCCcHHHHHHHHHHHcc
Confidence 4779999999999999999999999886654 24443 3344444 44689999999999984
No 24
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=35.64 E-value=35 Score=33.63 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHhCCCcccccCCCCCCCCCc-hHHHHHHHHHhh
Q 012107 330 TTEQLKDYVWKTLNSGKVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (471)
Q Consensus 330 ~~~~i~~~v~~~l~~g~~IpGfGH~vyk~~DP-Ra~~l~~~a~~~ 373 (471)
+++++++.+.+.++.|.-|.+-||-+...++| ..+++.+.++++
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~env~a~v~av~ey 346 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLENVKALVAARDEF 346 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998888 577777777765
No 25
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=35.52 E-value=94 Score=31.48 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+.. ....++.+ ..++|-..+++|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (377)
T 1iom_A 152 SHAANFLYMANGVEPSPEQARLMDAALILHAEHGFNASTFTAIAAFS--TETDLYSAITAAVASLK 215 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCCchHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 4778999999999999999999998876654 2343 34444444 45789999999999983
No 26
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C transferase; 1.60A {Pyrobaculum aerophilum}
Probab=33.66 E-value=1.2e+02 Score=31.13 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++|+|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+++|+.+|.
T Consensus 182 s~a~nfl~ml~g~~p~~~~~~~ld~~LvL~ADHg~naST~aaRv~aS--t~ad~~savaagi~aL~ 245 (409)
T 2ibp_A 182 GHAANFLYMMFGREPDPLASRGIDLYLILHADHEVPASTFAAHVVAS--TLSDLYSSVAAAIAALK 245 (409)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHhh--cCCcHHHHHHHHHHHcc
Confidence 4778999999999999999999999886654 23433 3444444 44789999999999994
No 27
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=33.54 E-value=1.2e+02 Score=30.69 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcH--HHHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPD--YVYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~--~v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+.. ....++.+ ..++|-..+++|+.+|.
T Consensus 148 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~ST~aaRv~aS--t~ad~~savaagi~aL~ 211 (373)
T 1vgp_A 148 SHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVAS--TFSDLYSSIVAGISALK 211 (373)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCccHHHHHHHHHHhcC
Confidence 4778999999999999999999999886654 2333 34444444 45789999999999993
No 28
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=33.36 E-value=1.2e+02 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+.+|+++|.
T Consensus 152 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~~d~~savaagi~aL~ 215 (378)
T 1vgm_A 152 SYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASS--TLSDMYSCIVAALAALK 215 (378)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCchHHHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 5778999999999999999999999886654 24443 3344444 44689999999999984
No 29
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=32.80 E-value=17 Score=32.11 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.3
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 012107 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (471)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (471)
..|||++++||.+. +.|+++=|
T Consensus 15 FtyrG~~ld~Ll~m----------s~e~l~~L 36 (142)
T 3u5c_P 15 HSYRGVDLEKLLEM----------STEDFVKL 36 (142)
T ss_dssp CBSSSCBHHHHHTT----------CHHHHHHH
T ss_pred EEEccccHHHHHcC----------CHHHHHHH
Confidence 48999999999987 37887766
No 30
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.72 E-value=16 Score=31.84 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.2
Q ss_pred eeecCCCHHHHhhhCCCCCCCCCCCHHHHHHH
Q 012107 98 IRFRGLSIPECQKLLPAAKPDGEPLPEGLLWL 129 (471)
Q Consensus 98 i~yRGy~I~eL~~~~p~~~~~~~~~~Eev~~L 129 (471)
..|||++++||.+. +.||++=|
T Consensus 6 ftyrG~~ld~L~~m----------s~~~l~~L 27 (132)
T 3j20_T 6 FRYRGYTLEQLMNM----------SLEELARL 27 (132)
T ss_dssp CCSSSSCHHHHHHH----------HHHHHHHH
T ss_pred EEEcCCcHHHHHcC----------CHHHHHHH
Confidence 47999999999997 37787665
No 31
>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S
Probab=27.38 E-value=22 Score=31.51 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.5
Q ss_pred eeecCCCHHHHhhh
Q 012107 98 IRFRGLSIPECQKL 111 (471)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (471)
..|||++++||.+.
T Consensus 11 ftyrG~~l~~L~~~ 24 (144)
T 2xzm_S 11 FTFRGKGLEELTAL 24 (144)
T ss_dssp CCCCTTCHHHHHHH
T ss_pred eeecCCcHHHHHhh
Confidence 48999999999993
No 32
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=25.92 E-value=1.5e+02 Score=29.81 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.++++++|+.|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+.+|+.+|.
T Consensus 145 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~aDHg~n~St~aarv~aS--t~~d~~savaagi~aL~ 208 (363)
T 2c6x_A 145 GHVENYYYMLTGEQPSEAKKKALETYMILATEHGMNASTFSARVTLS--TESDLVSAVTAALGTMK 208 (363)
T ss_dssp CSHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHT--TTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHh--cCccHHHHHHHHHHHcc
Confidence 4668899999999999999999998875443 24443 3344444 45689999999999984
No 33
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=23.35 E-value=69 Score=28.77 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=35.5
Q ss_pred HHHHHhCC---CCCHHHHHHHHHHHHhh-CCCcHHHHHHHHcCCCCCChHHHHHHHHHHhcc
Q 012107 127 LWLLLTGK---VPSKEQVDGLSKELRDR-ATVPDYVYKAIDALPVTAHPMTQFASGVMALQV 184 (471)
Q Consensus 127 ~~LLl~G~---lPt~~ql~~f~~~l~~~-~~lp~~v~~~i~~lP~~~hPM~~l~~avsal~~ 184 (471)
.-|-+|-+ +-|.+|++++..||..| +.+|+.|.++++. ..|+.....++-
T Consensus 29 ~RL~lYkria~~~~~eel~~l~~EL~DRFG~lP~~v~~Ll~v--------~~lK~~a~~lgI 82 (173)
T 2qsr_A 29 HKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEI--------GLVKSYLDKVFV 82 (173)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSCCHHHHHHHHH--------HHHHHHHHHTTE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCcHHHHHHHHH--------HHHHHHHHHCCC
Confidence 34444443 46899999999999887 6899999999873 345555555543
No 34
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=21.50 E-value=20 Score=32.07 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=0.0
Q ss_pred eeecCCCHHHHhhh
Q 012107 98 IRFRGLSIPECQKL 111 (471)
Q Consensus 98 i~yRGy~I~eL~~~ 111 (471)
..|||++++||.+.
T Consensus 24 FtYrG~~ld~Ll~m 37 (154)
T 3iz6_R 24 YSYRGVDLDALLDM 37 (154)
T ss_dssp --------------
T ss_pred EEEecCcHHHHHhC
Confidence 48999999999987
No 35
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=20.93 E-value=98 Score=30.12 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHhC-C---CcccccCCCCCCCCCc-hHHHHHHHHHhh
Q 012107 330 TTEQLKDYVWKTLNS-G---KVVPGFGHGVLRKTDP-RYTCQREFALKH 373 (471)
Q Consensus 330 ~~~~i~~~v~~~l~~-g---~~IpGfGH~vyk~~DP-Ra~~l~~~a~~~ 373 (471)
+++++++.+.+.++. | +-|.+.||-+...++| ....+.+.++++
T Consensus 287 t~e~i~~~v~~~l~~~g~~~g~I~~~g~gi~~~~p~en~~a~v~~v~~~ 335 (338)
T 2eja_A 287 SEEVIEEKTLGLLRRIPVKTRYVFNLGHGLAPDMELEKVKYLVDLVKSF 335 (338)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSEEBCBSSCCCTTSCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCCCeEEeCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 688999999998875 3 5799999999887777 566677777664
No 36
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=20.43 E-value=2.4e+02 Score=28.44 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=45.3
Q ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHhhC--CCcHH--HHHHHHcCCCCCChHHHHHHHHHHhc
Q 012107 122 LPEGLLWLLLTGKVPSKEQVDGLSKELRDRA--TVPDY--VYKAIDALPVTAHPMTQFASGVMALQ 183 (471)
Q Consensus 122 ~~Eev~~LLl~G~lPt~~ql~~f~~~l~~~~--~lp~~--v~~~i~~lP~~~hPM~~l~~avsal~ 183 (471)
++-+.+..+|+|+-|++.+.+.|..-|.-+. .+... ...++.+ ..++|-..+++|+++|.
T Consensus 151 s~a~nfl~ml~g~~p~~~~~~~ld~~Lvl~ADHg~n~St~aaRv~aS--t~ad~~savaagi~aL~ 214 (377)
T 1o7x_A 151 SFAKSFLLASFAREPTTDEINAMDKALILYTDHEVPASTTAALVAAS--TLSDMYSSLTAALAALK 214 (377)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHH--TTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHh--cCCcHHHHHHHHHHhcC
Confidence 4678899999999999999999998886554 24433 3444444 34689999999999984
Done!